Query FD01543135_04309 Protein RhsD
Match_columns 133
No_of_seqs 116 out of 218
Neff 4.93883
Searched_HMMs 86581
Date Tue Feb 27 22:37:48 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4296882.hhr -oa3m ../results/4296882.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4G6V_E Adhesin/hemolysin; tRNa 99.8 4.2E-17 4.8E-22 116.9 15.7 131 3-133 39-169 (176)
2 PF18451.5 ; CdiA_C ; Contact-d 99.3 1.2E-10 1.4E-15 71.3 9.8 35 91-126 37-71 (77)
3 4PQ1_A Putative electron trans 89.3 4.7 5.4E-05 27.1 6.6 70 64-133 48-138 (158)
4 2LRT_A Uncharacterized protein 86.0 7.7 8.9E-05 26.8 6.2 70 64-133 42-127 (152)
5 4HDE_A SCO1/SenC family lipopr 85.6 14 0.00016 24.9 7.8 70 64-133 36-147 (170)
6 PF19096.4 ; DUF5784 ; Family o 84.9 18 0.0002 32.9 9.1 110 16-126 182-307 (327)
7 7BGS_A Holliday junction resol 84.1 29 0.00034 27.8 9.3 75 22-96 2-83 (163)
8 2RLI_A SCO2 protein homolog, m 82.9 19 0.00022 24.3 7.0 70 64-133 33-143 (171)
9 2LS5_A Uncharacterized protein 82.5 20 0.00023 24.3 6.9 70 64-133 37-128 (159)
10 3GL3_B Putative Thiol:disulfid 82.2 16 0.00018 24.7 6.3 70 64-133 32-119 (152)
11 PF20207.2 ; DUF6568 ; Family o 81.2 23 0.00026 24.2 7.3 69 64-133 59-135 (159)
12 2B7K_C SCO1 protein; Metalloch 80.4 27 0.00031 24.7 7.2 70 64-133 48-158 (200)
13 1XZO_A Hypothetical protein yp 78.9 28 0.00032 23.8 7.7 70 64-133 40-149 (174)
14 2B1K_A Thiol:disulfide interch 77.8 30 0.00035 23.6 7.3 66 64-133 55-139 (168)
15 2LUS_A Thioredoxion; Cr-TRP16, 77.6 28 0.00032 23.1 6.3 70 64-133 33-122 (143)
16 4FYU_C Thioredoxin; five paral 76.8 28 0.00032 22.6 6.2 70 64-133 31-121 (145)
17 4WBJ_A Blr1131 protein; copper 75.7 32 0.00037 22.9 6.6 70 64-133 37-144 (164)
18 4WBJ_B Blr1131 protein; copper 75.7 32 0.00037 22.9 6.6 70 64-133 37-144 (164)
19 PF08534.14 ; Redoxin ; Redoxin 75.7 15 0.00017 24.0 4.5 68 64-133 34-119 (135)
20 3ERW_C Sporulation thiol-disul 74.7 21 0.00024 23.5 5.0 70 64-133 41-128 (145)
21 1GEF_D HOLLIDAY JUNCTION RESOL 72.0 20 0.00023 25.5 4.8 35 23-60 2-36 (123)
22 1KNG_A THIOL:DISULFIDE INTERCH 72.0 34 0.00039 23.1 5.7 70 64-133 46-131 (156)
23 6GXG_A Tryparedoxin; Covalent 71.7 32 0.00037 22.9 5.5 70 64-133 38-126 (145)
24 1OB8_B HOLLIDAY-JUNCTION RESOL 71.2 24 0.00028 26.0 5.2 37 24-60 4-42 (135)
25 3OR5_A Thiol:disulfide interch 70.0 39 0.00045 23.0 5.6 70 64-133 38-130 (165)
26 PF18743.5 ; AHJR-like ; REase_ 69.8 61 0.0007 23.5 10.9 96 19-114 2-120 (125)
27 3IA1_B Thio-disulfide isomeras 69.7 49 0.00056 22.5 6.1 70 64-133 34-123 (154)
28 2LJA_A Putative thiol-disulfid 69.5 37 0.00042 23.1 5.4 70 64-133 37-122 (152)
29 4TKD_C Holliday junction resol 69.5 23 0.00027 26.0 4.8 42 19-60 1-45 (141)
30 1JFU_B THIOL:DISULFIDE INTERCH 69.2 50 0.00058 23.0 6.2 70 64-133 64-157 (186)
31 2FY6_A Peptide methionine sulf 68.9 9.2 0.00011 25.0 2.3 70 64-133 30-120 (143)
32 3LWA_A Secreted thiol-disulfid 68.0 45 0.00052 23.9 5.8 68 64-133 66-160 (183)
33 7FC2_A Glutathione peroxidase 67.8 63 0.00073 24.3 6.8 69 64-133 68-195 (221)
34 3EWL_A uncharacterized conserv 67.5 51 0.00059 21.7 6.7 70 64-133 31-123 (142)
35 2B1L_B Thiol:disulfide interch 67.1 48 0.00056 21.3 5.5 69 64-133 16-100 (129)
36 1Z5Y_E Thiol:disulfide interch 66.5 59 0.00068 22.0 6.3 69 64-133 30-114 (149)
37 3F9U_B Putative exported cytoc 64.2 31 0.00035 23.6 4.2 69 64-133 54-144 (172)
38 2F9S_A Thiol-disulfide oxidore 63.5 28 0.00032 24.2 4.0 70 64-133 33-117 (151)
39 4K9Z_A Putative thiol-disulfid 63.2 53 0.00062 22.7 5.3 70 64-133 54-138 (168)
40 3FKF_D thiol-disulfide oxidore 62.8 66 0.00076 21.3 5.9 70 64-133 40-128 (148)
41 3GHF_A Septum site-determining 62.6 91 0.001 22.9 6.9 64 54-117 4-75 (120)
42 4GRF_A Putative thiol-disulfid 62.5 39 0.00045 22.5 4.4 70 64-133 36-123 (152)
43 7AOO_C Plasmoredoxin; Malaria, 62.4 82 0.00095 22.3 6.3 70 64-133 52-136 (179)
44 4NMU_B Thiol-disulfide oxidore 62.0 70 0.0008 21.3 6.4 70 64-133 39-126 (147)
45 PF08923.14 ; MAPKK1_Int ; Mito 61.7 13 0.00015 25.6 2.0 27 107-133 2-30 (120)
46 PF05209.17 ; MinC_N ; Septum f 61.0 66 0.00076 20.7 5.8 46 72-117 17-71 (73)
47 PF01870.22 ; Hjc ; Archaeal ho 61.0 65 0.00076 20.7 7.5 64 30-96 3-73 (87)
48 3CMI_A Peroxiredoxin HYR1; Thi 60.4 85 0.00099 21.8 7.9 70 64-133 36-147 (171)
49 2JU5_A Thioredoxin Disulfide I 59.9 89 0.001 21.9 7.2 70 64-133 51-130 (154)
50 3HJH_A Transcription-repair-co 59.5 26 0.0003 30.7 3.9 41 31-75 139-179 (483)
51 3EUR_A uncharacterized protein 59.1 80 0.00092 21.1 6.4 70 64-133 35-127 (142)
52 PF18225.5 ; AbfS_sensor ; Sens 58.5 36 0.00041 22.5 3.7 29 105-133 6-34 (65)
53 3P7X_C Probable thiol peroxida 58.0 44 0.00051 23.2 4.2 70 64-133 50-142 (166)
54 6N5U_A Protein SCO1 homolog 1, 57.3 88 0.001 21.0 6.4 70 64-133 37-145 (170)
55 PF21482.1 ; GLD3_KH3 ; GLD-3, 57.2 50 0.00058 23.8 4.2 40 94-133 5-47 (68)
56 3FW2_C thiol-disulfide oxidore 56.2 90 0.001 20.8 6.2 70 64-133 37-130 (150)
57 7K58_G Dynein light chain road 56.1 29 0.00034 22.5 2.9 28 104-133 3-30 (96)
58 2GGT_A SCO1 protein homolog, m 55.6 93 0.0011 20.8 7.2 70 64-133 30-140 (164)
59 4FO5_A thioredoxin-like protei 55.0 97 0.0011 20.8 6.7 70 64-133 36-127 (143)
60 5UM7_B Thioredoxin signature p 54.5 92 0.0011 21.6 5.3 69 64-133 81-168 (187)
61 3HCZ_A Possible thiol-disulfid 53.8 42 0.00048 22.2 3.4 70 64-133 38-125 (148)
62 4L1C_B Probable septum site-de 53.6 1.2E+02 0.0013 21.2 6.6 64 54-117 4-75 (103)
63 7F8M_D Robl_LC7 domain-contain 53.3 34 0.00039 22.8 2.9 27 105-133 8-34 (120)
64 PF14595.10 ; Thioredoxin_9 ; T 52.5 1.1E+02 0.0012 20.6 7.4 68 64-133 44-111 (139)
65 4HQZ_A Thioredoxin family prot 52.0 60 0.0007 23.3 4.2 70 64-133 75-167 (187)
66 3FK8_A Disulphide isomerase; A 51.5 1E+02 0.0012 20.3 4.9 68 64-133 33-105 (133)
67 PF08002.15 ; DUF1697 ; Protein 51.3 42 0.00048 24.9 3.4 35 96-133 11-46 (137)
68 PF16924.9 ; DpaA_N ; Dipicolin 51.1 33 0.00038 24.4 2.8 18 28-45 9-26 (110)
69 2H30_A Peptide methionine sulf 50.9 56 0.00064 22.1 3.7 70 64-133 42-135 (164)
70 7YH1_B Roadblock/LC7 domain pr 50.8 40 0.00046 22.4 3.0 27 105-133 7-33 (117)
71 PF13905.10 ; Thioredoxin_8 ; T 50.7 88 0.001 19.1 6.7 69 64-132 5-97 (97)
72 2HIY_B Hypothetical protein; S 50.7 40 0.00046 26.4 3.4 35 96-133 14-49 (183)
73 2WCW_C HJC; TYPE II RESTRICTIO 50.7 1.4E+02 0.0017 21.5 8.7 78 19-96 1-87 (139)
74 4HQS_A Thioredoxin family prot 50.4 45 0.00052 24.1 3.4 70 64-133 78-170 (190)
75 3LEQ_A uncharacterized protein 50.2 38 0.00044 22.6 2.8 30 104-133 1-32 (126)
76 PF02743.22 ; dCache_1 ; Cache 49.9 48 0.00055 23.5 3.4 31 103-133 148-180 (243)
77 2V1M_A GLUTATHIONE PEROXIDASE; 49.5 1.2E+02 0.0014 20.2 7.3 70 64-133 38-146 (169)
78 3FOV_A UPF0102 protein RPA0323 49.5 96 0.0011 22.8 5.0 39 22-60 19-57 (134)
79 PF02630.18 ; SCO1-SenC ; SCO1/ 49.4 1.1E+02 0.0012 19.7 7.2 69 64-132 28-136 (136)
80 4K1F_B Tryparedoxin peroxidase 49.2 89 0.001 22.5 4.7 70 64-133 43-140 (199)
81 6O8H_A UvrABC system protein B 48.7 52 0.0006 29.9 4.2 41 31-75 170-211 (593)
82 6DNL_A Thiol:disulfide interch 48.0 86 0.00099 19.4 4.0 70 64-133 25-95 (115)
83 3NRN_A uncharacterized protein 47.1 67 0.00078 27.0 4.3 35 33-67 15-51 (421)
84 1I8T_A UDP-GALACTOPYRANOSE MUT 47.0 1.2E+02 0.0014 26.0 5.9 52 33-84 16-71 (367)
85 2P31_A Glutathione peroxidase 46.4 1.3E+02 0.0015 21.2 5.2 70 64-133 56-160 (181)
86 3HQG_A Type-2 restriction enzy 46.3 2.8E+02 0.0032 23.6 7.8 86 24-111 83-179 (222)
87 7MIZ_e PDI family protein; cor 45.8 1.9E+02 0.0022 21.4 6.4 70 64-133 74-180 (220)
88 3CPT_A Mitogen-activated prote 45.8 46 0.00054 25.3 3.0 33 101-133 17-51 (143)
89 2CVB_A probable thiol-disulfid 45.5 66 0.00076 23.0 3.6 69 64-133 40-130 (188)
90 7EGT_A UvrABC system protein B 45.4 71 0.00082 28.4 4.4 41 31-75 170-210 (411)
91 2L5O_A Putative thioredoxin; S 45.2 75 0.00086 21.3 3.6 70 64-133 32-120 (153)
92 1XVQ_A thiol peroxidase; thior 45.0 1.7E+02 0.002 20.7 7.3 66 64-133 48-142 (175)
93 8GLV_Bc Dynein light chain roa 44.9 56 0.00065 21.5 3.0 28 104-133 3-30 (100)
94 2RAQ_G Conserved protein MTH88 44.8 2.1E+02 0.0025 21.8 6.5 62 64-125 10-84 (97)
95 PF05634.15 ; APO_RNA-bind ; AP 44.2 40 0.00046 28.6 2.6 31 35-66 170-200 (200)
96 2D7D_A UvrABC system protein B 44.0 65 0.00075 29.4 4.0 41 31-75 170-211 (661)
97 2R37_B Glutathione peroxidase 43.3 1.8E+02 0.0021 22.7 5.9 69 64-133 45-172 (207)
98 3L7H_C RE64145p; LC7, Km23, Ro 43.2 59 0.00068 21.2 2.8 28 104-133 4-31 (97)
99 PF06144.17 ; DNA_pol3_delta ; 43.1 1.7E+02 0.0019 21.4 5.4 62 67-129 3-64 (170)
100 PF02021.21 ; UPF0102 ; Unchara 43.1 52 0.0006 22.0 2.6 18 30-47 2-20 (91)
101 3LIF_B Putative diguanylate cy 43.0 67 0.00078 22.8 3.2 31 103-133 149-179 (254)
102 3KCM_D Thioredoxin family prot 42.7 1.6E+02 0.0019 19.9 7.2 70 64-133 32-120 (154)
103 1C4O_A DNA NUCLEOTIDE EXCISION 41.8 77 0.00089 29.4 4.2 41 31-75 166-206 (664)
104 3KYE_C Roadblock/LC7 domain, R 41.7 60 0.0007 23.3 2.9 32 102-133 21-54 (150)
105 7AJQ_G Biopolymer transport pr 41.7 2.2E+02 0.0025 20.9 7.5 65 58-131 74-138 (146)
106 2L57_A Uncharacterized protein 41.4 1.6E+02 0.0018 19.3 6.1 64 64-133 30-96 (126)
107 2B2N_B Transcription-repair co 40.8 89 0.001 26.8 4.2 41 31-75 139-179 (344)
108 7K5B_F Dynein light chain road 40.8 74 0.00086 22.9 3.3 28 104-133 1-28 (128)
109 2GB7_C R.Ecl18kI; ECL18KI-DNA 40.0 2.7E+02 0.0031 24.9 7.1 88 24-111 119-221 (305)
110 3ME8_A Putative uncharacterize 39.9 2E+02 0.0024 20.2 7.5 69 64-133 32-140 (170)
111 1LU4_A SOLUBLE SECRETED ANTIGE 39.7 1.6E+02 0.0019 18.9 4.7 70 64-133 28-113 (136)
112 1NA6_B Restriction endonucleas 39.3 4.2E+02 0.0049 24.5 8.3 86 24-111 265-361 (404)
113 7K58_F Dynein light chain road 38.6 85 0.00098 22.0 3.2 28 104-133 1-28 (110)
114 PF00578.25 ; AhpC-TSA ; AhpC/T 38.5 1.7E+02 0.002 18.9 6.1 69 64-133 32-125 (127)
115 5E37_C EF-Hand domain-containi 38.4 2.5E+02 0.0029 22.8 6.2 68 64-133 230-297 (356)
116 7KIZ_J Peroxiredoxin-2; hydrog 38.3 1.2E+02 0.0014 21.4 4.0 70 64-133 41-138 (197)
117 8P9R_B Biopolymer transport pr 38.2 1.6E+02 0.0019 18.5 7.5 70 53-131 10-79 (82)
118 7F8F_A Robl_LC7 domain-contain 38.0 90 0.001 19.6 3.0 28 104-133 6-33 (94)
119 7CT3_A Mutual gliding motility 37.7 92 0.0011 20.9 3.2 30 103-133 1-30 (120)
120 5C04_B Putative peroxiredoxin 37.5 1.7E+02 0.002 19.5 4.5 70 64-133 37-129 (153)
121 6B9X_B Ragulator complex prote 37.4 94 0.0011 21.2 3.2 31 103-133 3-33 (126)
122 3EYT_B uncharacterized protein 37.3 2E+02 0.0023 19.2 6.0 70 64-133 32-131 (158)
123 2L69_A Rossmann 2x3 fold prote 37.3 1.2E+02 0.0013 23.8 4.0 64 34-129 19-86 (134)
124 6PY5_A Putative methyl-accepti 36.9 87 0.001 22.1 3.0 31 103-133 147-177 (250)
125 PF02590.21 ; SPOUT_MTase ; Pre 36.4 1.9E+02 0.0021 22.3 5.0 50 79-130 56-105 (154)
126 1JQL_B DNA Polymerase III, DEL 36.0 2.5E+02 0.0029 20.0 7.1 66 62-129 18-84 (140)
127 5LTV_B Chemotactic transducer 35.7 1.1E+02 0.0013 22.3 3.5 31 103-133 169-199 (273)
128 3LOR_B Thiol-disulfide isomera 34.9 2.2E+02 0.0025 19.0 6.0 55 79-133 53-134 (160)
129 PF14201.10 ; DUF4318 ; Domain 34.8 1.2E+02 0.0014 21.2 3.4 42 92-133 2-43 (73)
130 6D8V_A Probable chemoreceptor 34.8 1E+02 0.0012 22.1 3.1 31 103-133 172-202 (269)
131 7W0W_B Methyl-accepting chemot 34.7 96 0.0011 21.6 3.0 31 103-133 164-194 (205)
132 PF09019.15 ; EcoRII-C ; EcoRII 34.4 3.9E+02 0.0045 21.8 8.4 87 24-115 38-137 (165)
133 5ER9_B UDP-galactopyranose mut 34.2 2.3E+02 0.0027 25.1 5.8 52 33-84 19-77 (400)
134 2M4I_A Septum site-determining 34.1 2.8E+02 0.0032 20.0 6.2 47 67-113 23-76 (105)
135 1WE0_B alkyl hydroperoxide red 33.9 2.6E+02 0.003 19.7 6.3 66 64-133 38-132 (187)
136 4KCE_A Peroxidoxin; Thioredoxi 33.7 2E+02 0.0023 21.3 4.6 70 64-133 60-157 (213)
137 4KCE_B Peroxidoxin; Thioredoxi 33.7 2E+02 0.0023 21.3 4.6 70 64-133 60-157 (213)
138 PF07615.15 ; Ykof ; YKOF-relat 33.3 1.9E+02 0.0022 19.5 4.2 52 31-98 21-72 (81)
139 4DSG_B UDP-galactopyranose mut 33.2 1.1E+02 0.0013 26.5 3.6 34 33-66 24-61 (484)
140 3KZ5_E Protein sopB; partition 33.1 1.2E+02 0.0013 20.8 3.0 21 91-111 20-40 (52)
141 3T1S_A Gliding protein MglB; G 32.8 99 0.0011 21.5 2.8 27 105-133 13-39 (136)
142 6U62_F Ragulator complex prote 32.8 82 0.00094 24.0 2.6 30 104-133 1-32 (162)
143 6MNI_A Methyl-accepting chemot 32.6 1.2E+02 0.0014 22.2 3.4 31 103-133 185-215 (287)
144 1NS5_A Hypothetical protein yb 31.8 1.8E+02 0.0021 22.4 4.3 48 79-130 57-104 (155)
145 6SCQ_A Cell division protein S 31.8 2.7E+02 0.0031 19.1 4.7 39 67-113 9-48 (74)
146 8FW5_G Schizosaccharomyces pom 31.7 1.8E+02 0.002 23.6 4.4 41 93-133 13-53 (181)
147 3U5R_H uncharacterized protein 31.7 65 0.00075 24.5 1.9 70 64-133 66-157 (218)
148 8GLV_BR Dynein light chain roa 31.6 99 0.0011 21.2 2.6 28 104-133 6-33 (105)
149 4FU0_B D-alanine--D-alanine li 31.4 1.6E+02 0.0018 24.0 4.0 91 25-118 19-125 (357)
150 5JLY_C Thioredoxin peroxidase- 31.4 3E+02 0.0034 19.5 5.4 70 64-133 45-142 (190)
151 7CH9_K STAS domain-containing 31.3 2.6E+02 0.003 18.9 5.5 41 73-113 23-64 (102)
152 7F5J_B Peptide Asparaginyl Lig 31.1 4.5E+02 0.0052 21.6 8.1 95 32-126 27-160 (282)
153 3LI9_A Hypothetical sensory tr 31.1 1.2E+02 0.0014 22.3 3.1 31 103-133 171-201 (291)
154 6B9X_C Ragulator complex prote 31.1 92 0.0011 21.9 2.4 29 105-133 2-32 (124)
155 6KHX_D Peroxiredoxin; Peroxire 31.0 3.3E+02 0.0038 20.2 5.4 70 64-133 39-150 (215)
156 PF03698.17 ; UPF0180 ; Unchara 31.0 88 0.001 21.8 2.3 15 31-45 10-24 (77)
157 6IOU_A Methyl-accepting chemot 30.6 1.3E+02 0.0015 21.6 3.1 31 103-133 149-179 (256)
158 8DQ8_B Amine oxidase; nicotine 30.5 3.7E+02 0.0042 22.0 5.9 52 33-84 18-72 (432)
159 4FYB_B Thiol:disulfide interch 30.3 2.6E+02 0.003 21.3 4.9 70 64-133 101-188 (241)
160 3HDC_A Thioredoxin family prot 30.3 2.8E+02 0.0033 18.9 6.2 70 64-133 45-129 (158)
161 1O8X_A TRYPAREDOXIN; TRYPAREDO 30.2 2.6E+02 0.003 18.5 6.3 70 64-133 32-123 (146)
162 4MH2_L Thioredoxin-dependent p 30.2 2.3E+02 0.0027 21.2 4.5 70 64-133 63-160 (220)
163 PF03572.22 ; Peptidase_S41 ; P 30.1 3.3E+02 0.0038 19.6 7.0 56 76-131 15-70 (163)
164 PF18954.4 ; DUF5697 ; Family o 30.1 4.2E+02 0.0048 20.8 6.9 65 58-132 100-164 (167)
165 4KYZ_D Designed protein OR327; 29.9 2E+02 0.0023 24.5 4.3 53 61-113 13-68 (172)
166 4JGP_A Sporulation kinase D; P 29.8 1.4E+02 0.0016 21.0 3.1 29 103-133 147-175 (217)
167 5CJ9_A Arginine repressor; str 29.3 2E+02 0.0023 22.4 4.2 96 30-131 19-133 (146)
168 3LID_A Putative sensory box/GG 29.3 1.1E+02 0.0013 22.3 2.6 30 103-133 172-201 (295)
169 5OVQ_E Peroxiredoxin; OXIDORED 29.0 1.2E+02 0.0014 22.7 2.9 69 65-133 42-138 (223)
170 3E0U_A Glutathione peroxidase; 28.7 2.8E+02 0.0032 18.3 7.4 70 64-133 32-141 (166)
171 5Y63_E Alkyl hydroperoxide red 28.7 3.3E+02 0.0038 19.1 4.9 70 64-133 49-143 (183)
172 PF05818.16 ; TraT ; Enterobact 28.5 1.1E+02 0.0013 25.4 2.8 33 30-67 40-72 (213)
173 4DGK_A Phytoene dehydrogenase; 28.5 1.8E+02 0.0021 24.8 4.1 35 33-67 16-52 (501)
174 5LTX_B Chemotaxis protein; Lig 28.3 1.5E+02 0.0018 21.5 3.2 31 103-133 166-196 (270)
175 1J3W_B Giding protein-mglB; Gl 28.3 1.2E+02 0.0014 22.3 2.6 27 105-133 16-42 (163)
176 6HN3_A Phospholipid hydroperox 28.2 3.3E+02 0.0038 19.1 7.3 70 64-133 41-150 (176)
177 2JJM_E GLYCOSYL TRANSFERASE, G 28.0 4.7E+02 0.0054 20.7 6.8 85 34-118 37-127 (394)
178 PF04592.18 ; SelP_N ; Selenopr 27.4 2.2E+02 0.0025 23.3 4.2 70 64-133 32-122 (235)
179 PF18075.5 ; FtsX_ECD ; FtsX ex 27.1 1.9E+02 0.0022 19.3 3.3 34 93-129 2-35 (90)
180 4YOD_A thioredoxin-like protei 27.1 3.6E+02 0.0042 22.3 5.5 70 64-133 178-270 (287)
181 PF18096.5 ; Thump_like ; THUMP 26.9 3.1E+02 0.0036 18.3 5.7 50 80-131 15-64 (73)
182 PF15643.10 ; Tox-PL-2 ; Papain 26.9 1.2E+02 0.0013 22.6 2.4 24 59-82 73-100 (101)
183 3C8C_A Methyl-accepting chemot 26.8 1.9E+02 0.0022 20.3 3.4 31 103-133 142-172 (240)
184 2B5Y_A YkuV protein; Thioredox 26.8 3E+02 0.0035 18.1 7.8 70 64-133 33-124 (148)
185 PF03259.21 ; Robl_LC7 ; Roadbl 26.8 99 0.0011 19.4 1.8 17 117-133 12-28 (88)
186 1JR3_D DNA polymerase III, del 26.8 5E+02 0.0058 21.4 6.2 62 67-129 23-84 (343)
187 1YQH_A IG hypothetical 16092; 26.7 3.4E+02 0.0039 19.8 4.8 53 31-98 28-80 (109)
188 4XMR_B Putative methyl-accepti 26.7 1.4E+02 0.0016 21.3 2.7 27 103-133 161-187 (254)
189 PF16818.9 ; SLM4 ; Protein SLM 26.7 1.4E+02 0.0016 22.8 2.9 31 103-133 2-42 (154)
190 PF13778.10 ; DUF4174 ; Domain 26.3 3E+02 0.0035 18.0 6.0 55 79-133 31-87 (112)
191 4FAK_A Ribosomal RNA large sub 26.2 2.5E+02 0.0029 21.9 4.2 49 80-130 65-113 (163)
192 7KNF_B 2,3-bisphosphoglycerate 26.2 4.6E+02 0.0053 24.7 6.5 67 34-100 323-406 (538)
193 PF05176.18 ; ATP-synt_10 ; ATP 25.9 2E+02 0.0023 23.7 3.8 51 78-133 181-233 (254)
194 PF13788.10 ; DUF4180 ; Domain 25.8 2.2E+02 0.0025 19.4 3.5 42 64-106 8-50 (111)
195 PF13366.10 ; PDDEXK_3 ; PD-(D/ 25.7 3.8E+02 0.0044 18.9 7.6 75 30-104 28-112 (118)
196 3BM3_B PspGI restriction endon 25.3 7.4E+02 0.0086 22.1 8.4 87 24-111 99-204 (272)
197 7YLA_6 GTPase HflX; HflX, RIBO 25.1 2.6E+02 0.003 25.0 4.6 78 31-126 28-107 (426)
198 2PN8_I Peroxiredoxin-4; PEROXI 24.9 2.8E+02 0.0032 20.7 4.1 70 64-133 55-152 (211)
199 PF13590.10 ; DUF4136 ; Domain 24.9 1.8E+02 0.0021 21.1 3.1 24 30-60 36-59 (161)
200 6FU4_A Probable chemotaxis tra 24.9 1.8E+02 0.0021 21.8 3.1 31 103-133 225-258 (345)
201 3KA7_A Oxidoreductase; OXIDORE 24.8 2.5E+02 0.0029 23.2 4.2 37 33-69 15-53 (425)
202 6ELW_A Phospholipid hydroperox 24.8 4.2E+02 0.0049 19.1 7.4 70 64-133 63-172 (192)
203 6F9G_B Methyl-accepting chemot 24.7 1.7E+02 0.0019 22.0 2.9 31 103-133 221-254 (321)
204 PF12324.12 ; HTH_15 ; Helix-tu 24.7 1.7E+02 0.002 20.4 2.8 25 103-133 47-71 (74)
205 PF03190.19 ; Thioredox_DsbH ; 24.6 3.9E+02 0.0045 18.7 7.6 69 64-133 41-116 (163)
206 3BY8_A Sensor protein dcuS; hi 24.4 2.2E+02 0.0025 18.0 3.1 27 105-133 43-69 (142)
207 5DVB_J Tsa2p; Oxidoreductase, 24.4 4.7E+02 0.0055 19.6 6.0 70 64-133 57-157 (217)
208 PF13756.10 ; Stimulus_sens_1 ; 24.4 2.3E+02 0.0026 19.8 3.4 31 103-133 1-31 (110)
209 1O6D_A Hypothetical UPF0247 pr 24.0 3E+02 0.0035 21.6 4.3 49 79-130 55-103 (163)
210 1I5G_A TRYPAREDOXIN II; trypar 23.9 3.7E+02 0.0042 18.1 6.7 70 64-133 32-123 (144)
211 3MCB_B Transcription factor BT 23.8 1E+02 0.0012 19.9 1.5 18 116-133 3-20 (58)
212 PF09984.13 ; sCache_4 ; Single 23.4 2.4E+02 0.0027 18.4 3.2 29 105-133 38-66 (148)
213 1TO0_F Hypothetical UPF0247 pr 23.1 3.4E+02 0.004 21.4 4.5 50 79-130 60-109 (167)
214 7UEK_A OT3; TIM barrel, de nov 23.0 8.5E+02 0.0098 22.0 7.4 87 32-126 58-162 (242)
215 3BF0_A Protease 4; protease, b 22.8 6.1E+02 0.007 24.1 6.7 57 58-114 36-115 (593)
216 3KH7_A Thiol:disulfide interch 22.8 4.4E+02 0.0051 18.7 5.5 69 64-133 62-146 (176)
217 1HF2_A SEPTUM SITE-DETERMINING 22.7 5.9E+02 0.0068 20.9 5.9 47 67-113 13-64 (210)
218 PF04239.16 ; DUF421 ; YetF C-t 22.4 1.4E+02 0.0016 22.6 2.1 36 97-132 27-64 (134)
219 4L0W_A Thioredoxin peroxidase 22.3 4.8E+02 0.0056 18.9 5.1 70 64-133 54-150 (208)
220 3RAZ_A Thioredoxin-related pro 22.3 4E+02 0.0046 17.9 6.5 70 64-133 28-119 (151)
221 3DRN_B Peroxiredoxin, bacterio 22.2 4.2E+02 0.0048 18.2 6.3 66 64-133 36-124 (161)
222 2IBO_D Hypothetical protein SP 21.8 4.6E+02 0.0053 18.9 4.6 52 31-98 23-74 (104)
223 3ZH9_B DELTA; HYDROLASE, REPLI 21.7 4.9E+02 0.0057 21.3 5.2 62 67-129 20-82 (347)
224 3QOU_A protein ybbN; thioredox 21.6 6E+02 0.0069 19.8 5.5 64 64-133 30-93 (287)
225 3LKX_A Transcription factor BT 21.6 1.2E+02 0.0014 20.3 1.5 18 116-133 3-20 (66)
226 4Y68_D Putative nisin-resistan 21.5 7.5E+02 0.0087 20.8 6.8 67 65-131 123-190 (312)
227 2J80_B SENSOR KINASE CITA; TRA 21.4 3E+02 0.0034 17.2 3.2 27 105-133 43-69 (135)
228 5YKJ_A Peroxiredoxin PRX1, mit 21.4 4.3E+02 0.0049 19.6 4.5 69 65-133 37-140 (214)
229 2YXD_A Probable cobalt-precorr 21.2 1.8E+02 0.0021 22.2 2.5 37 27-63 134-182 (183)
230 3APS_A DnaJ homolog subfamily 21.1 3.8E+02 0.0043 17.2 5.0 62 64-133 28-89 (122)
231 7DGU_A de novo designed protei 21.1 2.4E+02 0.0028 21.5 3.1 22 20-41 52-74 (106)
232 8IB8_Q Phosducin-like protein 21.0 4.7E+02 0.0055 21.6 5.1 57 64-133 116-175 (239)
233 PF03852.19 ; Vsr ; DNA mismatc 21.0 4.2E+02 0.0048 17.7 4.4 32 30-62 24-55 (75)
234 2JSY_A Probable thiol peroxida 20.9 4.5E+02 0.0052 18.1 4.7 70 64-133 48-141 (167)
235 PF20029.3 ; DUF6436 ; Domain o 20.8 1.2E+02 0.0013 18.9 1.3 12 122-133 5-16 (59)
236 3QZ6_A HpcH/HpaI aldolase; str 20.6 7.2E+02 0.0083 20.2 6.1 47 61-113 13-60 (261)
237 8T4C_B Thioredoxin oxidoreduct 20.6 4.2E+02 0.0048 17.5 6.1 68 64-133 41-127 (147)
238 PF11964.12 ; SpoIIAA-like ; Sp 20.6 3.5E+02 0.004 16.6 5.6 63 64-126 3-69 (106)
239 8BIY_A Histidine kinase; signa 20.4 2.5E+02 0.0029 17.4 2.8 28 104-133 37-64 (131)
240 PF11009.12 ; BrxC ; Monothiol 20.4 3.5E+02 0.004 16.5 4.9 68 64-133 22-90 (103)
241 6HJM_H MglB; Small GTPase, gua 20.4 2.3E+02 0.0027 22.1 3.1 27 105-133 48-74 (192)
242 6MAB_A Sigma regulatory family 20.3 2.3E+02 0.0026 20.9 2.8 30 103-133 150-180 (272)
243 7PRR_A Probable chemotaxis tra 20.1 1.9E+02 0.0022 21.8 2.4 31 103-133 225-258 (350)
244 4EVM_A Thioredoxin family prot 20.1 3.8E+02 0.0044 16.9 5.1 70 64-133 26-118 (138)
245 PF01514.21 ; YscJ_FliF ; Secre 20.0 4.8E+02 0.0055 20.5 4.7 39 94-133 131-173 (175)
No 1
>4G6V_E Adhesin/hemolysin; tRNase, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026a}
Probab=99.78 E-value=4.2e-17 Score=116.92 Aligned_cols=131 Identities=49% Similarity=0.790 Sum_probs=119.3 Template_Neff=11.300
Q ss_pred CCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCHhHHHHHH
Q FD01543135_043 3 GNKGSLTGYPAKNPANSTEDNKRAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNVRNIYDRV 82 (133)
Q Consensus 3 d~~~~p~G~p~~~~~~~~~~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~r~I~~~i 82 (133)
..++...|.++.+.+.......+.+.++++++..|+..||.++++|...+.+.|||.|+|+.||+|+|...+...|+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~d~~i~g~~~~~~~~~~~~~~~i~~~~ 118 (176)
T 4G6V_E 39 EATGSLSGKPTQIPPLSDEVTTRSLIRENQSAVTLANKGYDVVQNPEVLGPKNPDYTINGQVFDNYAPATGNVRNIATTI 118 (176)
T ss_dssp ---CEEESCCCCCCTTCCHHHHHHHHHHHHHHHHHHHTTCEEEESCCCSSSSCCSEEETTEEEEEECCSCCCHHHHHHHH
T ss_pred CCCCCCCCCcCCCCCCCCcccchhHHHHHHHHHHHHHCCCcEEECCCCCCCCCCCceeCCEEEceecCCCCChhHHHHHH
Confidence 34456677888888888999999999999999999999999999998777899999999999999999999999999999
Q ss_pred HHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 83 NQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 83 ~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
..++...++.+++++|.++.++...+...+..+|+.++.++++++++|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ 169 (176)
T 4G6V_E 119 SNKVSSGQASNIVVNLADSSASPAAIEAQINSYPIPGLGKVIVIDKLGNIT 169 (176)
T ss_dssp HHHHHTTCCCEEEEECTTCCCCHHHHHHHHHHSCCTTCCCEEEECTTCCEE
T ss_pred HhhcccCCCCeEEEeccCCCCCHHHHHHHHHcCCCCCcCEEEEEeCCCcEE
Confidence 999888999999999999999999999999999999999999998988763
No 2
>PF18451.5 ; CdiA_C ; Contact-dependent growth inhibition CdiA C-terminal domain
Probab=99.29 E-value=1.2e-10 Score=71.26 Aligned_cols=35 Identities=6% Similarity=-0.132 Sum_probs=15.2 Template_Neff=12.100
Q ss_pred CCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEE
Q FD01543135_043 91 TNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAI 126 (133)
Q Consensus 91 a~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI 126 (133)
...+.+.+....+....+...+.. +..++..++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 71 (77)
T D9S7M8_FIBSS/5 37 MKATIAESKFYEHKENSKIILLSK-HKSIAEGKKAV 71 (77)
T ss_pred CCeEEEEcCCCCCCHHHHHHHHhh-chhcccEEEEE
Confidence 344444444333344444444433 33444555554
No 3
>4PQ1_A Putative electron transport related protein; Thioredoxin-like region, reductant, oxidant, Oxidoreductase; 2.097A {Corynebacterium diphtheriae}
Probab=89.35 E-value=4.7 Score=27.15 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCC---------------------CCCCce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWP---------------------IDGLDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~P---------------------i~gL~E 122 (133)
++..|++....-+.....+.+-.........++-+.-...+...+...+.+.. +.++-.
T Consensus 48 ~l~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 127 (158)
T 4PQ1_A 48 VLNAWGQWCAPCRSESDDLQEVHEYLGDKGTVVGINVRDYSKNIAQDFVKDNGITYPSIYDPPFKTAAQLGGVPASVVPT 127 (158)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHHHHHGGGEEEEEEECSCCSHHHHHHHHHHTTCCSCEEECTTCTHHHHTTSCCTTCSSE
T ss_pred EEEEEcccCHHHHHhhHHHHHHHHHHcCCCeEEEEEcCCCChHHHHHHHHHCCCCCcEEeCCCCCcHHHhCCCCCccCCE
Q ss_pred EEEEcCCCCcC
Q FD01543135_043 123 IIAIDKMGEPV 133 (133)
Q Consensus 123 vivI~k~G~ii 133 (133)
++++|++|+|+
T Consensus 128 ~~lid~~g~i~ 138 (158)
T 4PQ1_A 128 TIVLDKQHRPA 138 (158)
T ss_dssp EEEECTTSCEE
T ss_pred EEEECCCCCEE
No 4
>2LRT_A Uncharacterized protein; STRUCTURAL GENOMICS, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology, OXIDOREDUCTASE; NMR {Bacteroides vulgatus}
Probab=86.03 E-value=7.7 Score=26.84 Aligned_cols=70 Identities=9% Similarity=0.002 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH----------------HHHHhCCCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK----------------QQFSDWPIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~----------------~~l~~~Pi~gL~EvivI~ 127 (133)
.|..+.+.....-..+..+.++.......-+.++.++..-....+. ..+..+.+.++-.+++||
T Consensus 42 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~lid 121 (152)
T 2LRT_A 42 FTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVN 121 (152)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEE
T ss_pred EEcCCCccCHHHHHHHHHHHHHhhcCCeEEEEEEeCCCcchhhhhhhhCCeEEEeCCCCCccchHHHhCCcCCCeEEEEc
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 122 ~~g~i~ 127 (152)
T 2LRT_A 122 RNNELS 127 (152)
T ss_dssp TTTEEE
T ss_pred CCCCEe
No 5
>4HDE_A SCO1/SenC family lipoprotein; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy; HET: MSE; 1.317A {Bacillus anthracis} SCOP: c.47.1.0, l.1.1.1
Probab=85.65 E-value=14 Score=24.95 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCC----CCCHhHHHHHHHHHhhcCC--CCeEEEECCCCCCCHHHHHHHHHh-----------------------
Q FD01543135_043 64 VFDNIAPT----TSNVRNIYDRVNQKVLSGQ--TNSVVINMADTSVSIDELKQQFSD----------------------- 114 (133)
Q Consensus 64 ~fDcYaP~----t~~~r~I~~~i~~KV~~~Q--a~RiVlNL~ds~~~~~~l~~~l~~----------------------- 114 (133)
++..+++. ......-...+.+...... ..-+.+..+...-+...+.+.+..
T Consensus 36 ~l~~~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (170)
T 4HDE_A 36 VADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFS 115 (170)
T ss_dssp EEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCcCCHHHHHHHHHHhcCCCCceEEccCCCHHHHHHHH
Q ss_pred -------------CCCCCCceEEEEcCCCCcC
Q FD01543135_043 115 -------------WPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 115 -------------~Pi~gL~EvivI~k~G~ii 133 (133)
+.+.++-.+++||++|+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~p~~~lid~~g~v~ 147 (170)
T 4HDE_A 116 KDNFQSLVDKPENGQVIHGTSFYLIDQNGKVM 147 (170)
T ss_dssp HHHHCCCCBCCTTSCCBCCCEEEEECTTSCEE
T ss_pred HhhhcccccCCCCCceecccEEEEECCCCcEE
No 6
>PF19096.4 ; DUF5784 ; Family of unknown function (DUF5784)
Probab=84.94 E-value=18 Score=32.88 Aligned_cols=110 Identities=23% Similarity=0.244 Sum_probs=0.0 Template_Neff=2.500
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeEC-----CEEEeeeCCCCCCHh-------HHHHHHH
Q FD01543135_043 16 PANSTEDNKRAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKIN-----GEVFDNIAPTTSNVR-------NIYDRVN 83 (133)
Q Consensus 16 ~~~~~~~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~Ie-----G~~fDcYaP~t~~~r-------~I~~~i~ 83 (133)
....+...-++..-|-.||++|..+||+|+-.-.+..+-.=||+.+ |....+-=|...+-| .|+.+..
T Consensus 182 Se~~D~~RM~AaM~EF~aAklL~dAGy~~~PEiev~tGHslDfra~~~~~~~~LVEVTRP~pp~rR~a~tpvaAvr~Ta~ 261 (327)
T A0A1H3Z0H0_9EU 182 SEQLDLTRMAASMGEFHTAKLLVDMGYDVEPEIEVSTGHSIDFQAQTETGEQPLVEVTRPLPPNRRSAGTPVAAVRDTAQ 261 (327)
T ss_pred ccccCHHHHHHHHhHHHHHHHHHHCCCCcccEeeecCCceeEEEecCCCCccceEEEecCCCCCccCCCCccHHHHhhhc
Q ss_pred HHhhcCCC----CeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEE
Q FD01543135_043 84 QKVLSGQT----NSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAI 126 (133)
Q Consensus 84 ~KV~~~Qa----~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI 126 (133)
.|. .+|- .-+||-.|=|+..-++-.....+.|--+-+--+|.
T Consensus 262 tKt-~gQL~~Hggga~LfVDCSSF~DdeW~~v~~e~P~v~hrPaVVf 307 (327)
T A0A1H3Z0H0_9EU 262 TKT-SGQLSAHAGGVVLFVDCSSFPDDDWLAVAGERPDVGHRPAVVY 307 (327)
T ss_pred cCc-ccchHHhcCCeEEEEeCCCCChHHHHHHhcCCCCCCCCCEEEE
No 7
>7BGS_A Holliday junction resolvase; archeal holliday junction resolvase helicase DNA binding enzyme phage 15-6 thermus thermophilus, RECOMBINATION; HET: SO4, MSE; 2.5A {Thermus thermophilus phage 15-6}
Probab=84.06 E-value=29 Score=27.77 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred HHHHHHHHHHHHHHHHHHCCCceEeCCCCCCCCC---CCeeE----CCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeE
Q FD01543135_043 22 DNKRAIWRENESAIILSQRGYNVEQNPSVPGIKN---PDFKI----NGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSV 94 (133)
Q Consensus 22 ~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~~kn---PDy~I----eG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~Ri 94 (133)
...++.+-|++-|+.|.+.||.++.+|....... ||... .+-.|.|=+-.+.+...+...+.+=..+.....+
T Consensus 2 sk~KG~~~EReva~~L~~~G~~a~R~~~SG~~~~~~~~DIi~~~~~~~~~iE~K~~~~~~~~~~~~w~~qa~~~~~~~~~ 81 (163)
T 7BGS_A 2 SKDKGRRYENELVELLKQRGFTAWRVPLSGALGGMFSSDVRVMLAGQEHRVEVKMRSTPQAASATRILSKLPFSCQGYRV 81 (163)
T ss_dssp ---CCHHHHHHHHHHHHHTTCEEEECC----------CCEEEEETTEEEEEEEEECSSTTTTTCTTTTTTCSEEETTEEE
T ss_pred hhHHHHHHHHHHHHHHHHCCCCEEEccCCCCCCCCCCCCEEEEeCCCeEEEEEEecCCCchhhHHHHHhhcchhhCCCeE
Q ss_pred EE
Q FD01543135_043 95 VI 96 (133)
Q Consensus 95 Vl 96 (133)
|+
T Consensus 82 Vv 83 (163)
T 7BGS_A 82 FF 83 (163)
T ss_dssp EE
T ss_pred EE
No 8
>2RLI_A SCO2 protein homolog, mitochondrial; Copper protein, thioredoxin fold, Metal transport, Structural Genomics, SPINE2-Complexes, Structural Proteomics in Europe, SPINE, Structural Proteomics; HET: CU1; NMR {Homo sapiens} SCOP: c.47.1.0, l.1.1.1
Probab=82.85 E-value=19 Score=24.31 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcCC----CCeEEEECCCCCCCHHHHHHHHHh------------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSGQ----TNSVVINMADTSVSIDELKQQFSD------------------------ 114 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~Q----a~RiVlNL~ds~~~~~~l~~~l~~------------------------ 114 (133)
.|....+. ....-..+..+.++..... ..-|.+..+....+.+.+......
T Consensus 33 f~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (171)
T 2RLI_A 33 FGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRV 112 (171)
T ss_dssp EECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCC
T ss_pred EecCCCcccChHHHHHHHHHHHHhccCCCCCCceEEEEEecCCCCCHHHHHHHHHHhCcceeeccCCHHHHHHHHHHcCc
Q ss_pred ------------CCCCCCceEEEEcCCCCcC
Q FD01543135_043 115 ------------WPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 115 ------------~Pi~gL~EvivI~k~G~ii 133 (133)
+.+.++-.+++||++|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 143 (171)
T 2RLI_A 113 YYNAGPKDEDQDYIVDHSIAIYLLNPDGLFT 143 (171)
T ss_dssp CCEECCCCSSCCCCEECCCEEEEECTTSCEE
T ss_pred eeecCCCCCCCcceeeccceEEEECCCCCEE
No 9
>2LS5_A Uncharacterized protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology; NMR {Bacteroides thetaiotaomicron} SCOP: c.47.1.0, l.1.1.1
Probab=82.52 E-value=20 Score=24.28 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCe--EEEECCCCCCCHHHHHHHHHhCCCC--------------------CCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNS--VVINMADTSVSIDELKQQFSDWPID--------------------GLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~R--iVlNL~ds~~~~~~l~~~l~~~Pi~--------------------gL~ 121 (133)
++..|++....-+.....+.+-........ +.+-.-+..-+.+.+.+.+.++.+. ++-
T Consensus 37 ~v~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 116 (159)
T 2LS5_A 37 MLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGIT 116 (159)
T ss_dssp EEEEECTTCSTHHHHHHHCCCCCCHHHSSTTTEEEEEEESSCCHHHHHHHHHHHCCCSCEEECTTSHHHHTTBCTTSCCC
T ss_pred EEEEECcccHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcHHHHHHHHHHhCCCcceecCCchHHHHHHccccCCce
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 117 ~~~lid~~g~i~ 128 (159)
T 2LS5_A 117 RNVLIDREGKIV 128 (159)
T ss_dssp EEEEECTTSBEE
T ss_pred eEEEECCCCcEE
No 10
>3GL3_B Putative Thiol:disulfide interchange protein DsbE; Oxidoreductase, PSI-II, 11210h, Thiol:disulfide interchange protein DsbE, putative, Chlorobium tepidum, Structural Genomics, Protein Structure Initiative, New; HET: MSE; 2.09A {Chlorobium tepidum TLS} SCOP: c.47.1.0, l.1.1.1
Probab=82.20 E-value=16 Score=24.74 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHh------------------CCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSD------------------WPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~------------------~Pi~gL~Eviv 125 (133)
+...|++....-+.....+.+-....+...+.+-.-....+...+...+.. +.+.++-.+++
T Consensus 32 li~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l 111 (152)
T 3GL3_B 32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFL 111 (152)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCCHHHHTTCCSSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCChHHHHHHHHhCCCCceEeeCCCCCcchhhcccccCEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
+|++|+|+
T Consensus 112 id~~g~i~ 119 (152)
T 3GL3_B 112 IDRNGKVL 119 (152)
T ss_dssp ECTTSBEE
T ss_pred ECCCCcEE
No 11
>PF20207.2 ; DUF6568 ; Family of unknown function (DUF6568)
Probab=81.25 E-value=23 Score=24.16 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCC--eEEEECCCCCCCHHHHHHHHHhCC------CCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTN--SVVINMADTSVSIDELKQQFSDWP------IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~--RiVlNL~ds~~~~~~l~~~l~~~P------i~gL~EvivI~k~G~ii 133 (133)
+.+.|++....-+.....+.+-....+.+ -+.++.+...-+.+.+.....++. +.+.-.++++ ++|+++
T Consensus 59 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~g~~~ 135 (159)
T R6GRK0_9FIRM/1 59 FLVISYTGDIQVHKNEKEIEKYLKKINLLDNVMYLDMKDYLNDENYLDNLNKVLKLKGNSEIHSLPAVVFY-KNGVVE 135 (159)
T ss_pred EEEEEeCCCHHHHhHHHHHHHHHHHcCcCCcEEEEecccccCChHHHHHHHHHcCCCCCcccccCCEEEEE-ECCEEE
No 12
>2B7K_C SCO1 protein; Metallochaperone, Cytochrome c Oxidase, Sco, Sco1, METAL BINDING PROTEIN; 1.8A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=80.45 E-value=27 Score=24.74 Aligned_cols=70 Identities=16% Similarity=0.028 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcC---CCCeEEEECCCCCCCHHHHHHHHHhCCCC---------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSG---QTNSVVINMADTSVSIDELKQQFSDWPID--------------------- 118 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~---Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~--------------------- 118 (133)
.|....+. ....-..+..+.++.... ...-+.+..+...-+.+.+...+..+.+.
T Consensus 48 f~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (200)
T 2B7K_C 48 FGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp EECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred EEcCCCCCcCHHHHHHHHHHHHHHHHccCCccEEEEEEeCCCCCCHHHHHHHHHhhCCCeEEeeCCHHHHHHHHHHcCCE
Q ss_pred ----------------CCceEEEEcCCCCcC
Q FD01543135_043 119 ----------------GLDKIIAIDKMGEPV 133 (133)
Q Consensus 119 ----------------gL~EvivI~k~G~ii 133 (133)
++-.+++||++|+|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 158 (200)
T 2B7K_C 128 FSTPPNVKPGQDYLVDHSIFFYLMDPEGQFV 158 (200)
T ss_dssp -------------CTTTCCCEEEECTTSCEE
T ss_pred EeCCCCCCCCCceeeecCcEEEEECCCCcEE
No 13
>1XZO_A Hypothetical protein ypmQ; thioredoxin-like fold, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, METAL BINDING PROTEIN; HET: CA; 1.702A {Bacillus subtilis} SCOP: c.47.1.10
Probab=78.94 E-value=28 Score=23.83 Aligned_cols=70 Identities=9% Similarity=0.111 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcCC--CCeEEEECCCCCCCHHHHHHHHHhCCCCCC--------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSGQ--TNSVVINMADTSVSIDELKQQFSDWPIDGL-------------------- 120 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~Q--a~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL-------------------- 120 (133)
.|....+. ....-.-+..+.++..... -.-+.+..+...-+.+.+.+....+++...
T Consensus 40 f~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (174)
T 1XZO_A 40 FIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKS 119 (174)
T ss_dssp EECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHH
T ss_pred EEecCCCCcChHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHhCCCCCCCceeecCCCHHHHHHHHHHh
Q ss_pred -----------------ceEEEEcCCCCcC
Q FD01543135_043 121 -----------------DKIIAIDKMGEPV 133 (133)
Q Consensus 121 -----------------~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 149 (174)
T 1XZO_A 120 FKAIVKKPEGEDQVIHQSSFYLVGPDGKVL 149 (174)
T ss_dssp HCCCCCCCSSCCSCCSCCEEEEECTTSEEE
T ss_pred cCceeeCCCCCCccccceEEEEECCCCcEE
No 14
>2B1K_A Thiol:disulfide interchange protein dsbE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, OXIDOREDUCTASE; 1.9A {Escherichia coli} SCOP: c.47.1.10
Probab=77.76 E-value=30 Score=23.60 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHh-------------------CCCCCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSD-------------------WPIDGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~-------------------~Pi~gL~Evi 124 (133)
++..|++....-+.....+.+-.+. +..-+.++++++. +.+...+.+ +.+.+.-.++
T Consensus 55 ~i~f~~~~c~~c~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 130 (168)
T 2B1K_A 55 LLNVWATWCPTCRAEHQYLNQLSAQ-GIRVVGMNYKDDR---QKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETF 130 (168)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHT-TCCEEEEEESCCH---HHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEE
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHC-CCeEEEEEecCcH---HHHHHHHHHhCCCCCeEEeCCCCchhhhhcccCCCEEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++|++|+|+
T Consensus 131 ~id~~g~v~ 139 (168)
T 2B1K_A 131 LIDGNGIIR 139 (168)
T ss_dssp EECTTSBEE
T ss_pred EECCCCeEE
No 15
>2LUS_A Thioredoxion; Cr-TRP16, OXIDOREDUCTASE; NMR {Carcinoscorpius rotundicauda}
Probab=77.64 E-value=28 Score=23.06 Aligned_cols=70 Identities=9% Similarity=0.192 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcC--CCCeEEEECCCCCCCHHHHHH------------------HHHhCCCCCCceE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSG--QTNSVVINMADTSVSIDELKQ------------------QFSDWPIDGLDKI 123 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~--Qa~RiVlNL~ds~~~~~~l~~------------------~l~~~Pi~gL~Ev 123 (133)
.|....|........+..+.++.... ...-|.++.++..-......+ ....+.+.+.-.+
T Consensus 33 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 112 (143)
T 2LUS_A 33 FSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPAL 112 (143)
T ss_dssp ECCTTSSCCTTSHHHHHHHHHHHHHTTCSEEEEECSSCCCHHHHHHHHHTTSCSSCBCCTTCTHHHHHHHHHTCCCCSEE
T ss_pred EEcccChhhhchHHHHHHHHHHhhcCCCCeEEEEEeCCCChHHHHHHHHHcCCCCeecccCCCCcchHHHHhCCCCCCEE
Q ss_pred EEEcCCCCcC
Q FD01543135_043 124 IAIDKMGEPV 133 (133)
Q Consensus 124 ivI~k~G~ii 133 (133)
+++|++|+|+
T Consensus 113 ~lid~~g~i~ 122 (143)
T 2LUS_A 113 VIVKKDGTLI 122 (143)
T ss_dssp EEEETTSCEE
T ss_pred EEEcCCCCEE
No 16
>4FYU_C Thioredoxin; five parallel and anti parallel beta sheet, Oxidoreductase; HET: PEG; 2.0A {Wuchereria bancrofti}
Probab=76.76 E-value=28 Score=22.63 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHH---------------------HHHHHhCCCCCCce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDEL---------------------KQQFSDWPIDGLDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l---------------------~~~l~~~Pi~gL~E 122 (133)
++..+++....-+.....+.+.....+...+.+-.-....+.+.+ ......+-+.++-.
T Consensus 31 ~l~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 110 (145)
T 4FYU_C 31 ALYFSAHWCPPCRQFTPILKEFYEEVDDDQFEIVFVSLDHSEEDLNNYVKESHGDWYHVPFGSSEIEKLKNKYEVAGIPM 110 (145)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHCCTTEEEEEEECCSSHHHHHHHHHHHCCSCEECCTTCTHHHHHHHHHTCCSSSE
T ss_pred EEEEeCCcCHHHHHHHHHHHHHHHHhccCCcEEEEEEccCCcHHHHHHHhhcCCcceeecCCchHHHHHHHHhCCCCCCE
Q ss_pred EEEEcCCCCcC
Q FD01543135_043 123 IIAIDKMGEPV 133 (133)
Q Consensus 123 vivI~k~G~ii 133 (133)
++++|++|+|+
T Consensus 111 ~~li~~~g~i~ 121 (145)
T 4FYU_C 111 LIVIKSDGNVI 121 (145)
T ss_dssp EEEEETTSCEE
T ss_pred EEEECCCCcEE
No 17
>4WBJ_A Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=75.74 E-value=32 Score=22.88 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhc--CCCCeEEEECCCCCCCHHHHHHHHH---------------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLS--GQTNSVVINMADTSVSIDELKQQFS--------------------------- 113 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~--~Qa~RiVlNL~ds~~~~~~l~~~l~--------------------------- 113 (133)
.|....|. ....-..+..+.++... .+-.-|.++.++..-+.+.+.+.+.
T Consensus 37 ~~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (164)
T 4WBJ_A 37 FGYTHCPDVCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYA 116 (164)
T ss_dssp EECTTCTTHHHHHHHHHHHHHHHTGGGGGGSEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEBCCHHHHHHHHHHTTCCE
T ss_pred EEeCCCCccCcHHHHHHHHHHHHhhhcccceEEEEEEcCCCCCCHHHHHHHHHhcCCCeEEecCCHHHHHHHHHHhhhhc
Q ss_pred --------hCCCCCCceEEEEcCCCCcC
Q FD01543135_043 114 --------DWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 114 --------~~Pi~gL~EvivI~k~G~ii 133 (133)
.+.+.++-.+++||++|+|+
T Consensus 117 ~~~~~~~~~~~~~~~p~~~lid~~g~i~ 144 (164)
T 4WBJ_A 117 KKVPTKDGDYTMDHTALIYLMDRDGRFV 144 (164)
T ss_dssp EEEECSTTCEEEEECCCCEEECTTSCEE
T ss_pred ccCCCCCCCeEeeeceEEEEECCCCcEE
No 18
>4WBJ_B Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=75.74 E-value=32 Score=22.88 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhc--CCCCeEEEECCCCCCCHHHHHHHHH---------------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLS--GQTNSVVINMADTSVSIDELKQQFS--------------------------- 113 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~--~Qa~RiVlNL~ds~~~~~~l~~~l~--------------------------- 113 (133)
.|....|. ....-..+..+.++... .+-.-|.++.++..-+.+.+.+.+.
T Consensus 37 ~~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (164)
T 4WBJ_B 37 FGYTHCPDVCPTSLFEISEVLRAMGKDADKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYA 116 (164)
T ss_dssp EECTTCTTHHHHHHHHHHHHHHHTGGGGGGSEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEBCCHHHHHHHHHHTTCCE
T ss_pred EEeCCCCccCcHHHHHHHHHHHHhhhcccceEEEEEEcCCCCCCHHHHHHHHHhcCCCeEEecCCHHHHHHHHHHhhhhc
Q ss_pred --------hCCCCCCceEEEEcCCCCcC
Q FD01543135_043 114 --------DWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 114 --------~~Pi~gL~EvivI~k~G~ii 133 (133)
.+.+.++-.+++||++|+|+
T Consensus 117 ~~~~~~~~~~~~~~~p~~~lid~~g~i~ 144 (164)
T 4WBJ_B 117 KKVPTKDGDYTMDHTALIYLMDRDGRFV 144 (164)
T ss_dssp EEEECSTTCEEEEECCCCEEECTTSCEE
T ss_pred ccCCCCCCCeEeeeceEEEEECCCCcEE
No 19
>PF08534.14 ; Redoxin ; Redoxin
Probab=75.68 E-value=15 Score=23.97 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCC-----------------CHHHHHHHHHhCCCC-CCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSV-----------------SIDELKQQFSDWPID-GLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~-----------------~~~~l~~~l~~~Pi~-gL~Eviv 125 (133)
.|+...+.....-..+..+.++.......-+.+..++..- -.+. .....+.+. +.-.+++
T Consensus 34 ~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~l 111 (135)
T Q6AIL8_DESPS/2 34 FFATWCPPCIQEVDSLIKLQKNFVEKGFSVVALSVDQVGVSKVKDFVSSKGINYPVLMADQ--QVMRDFGGIYGIPVGFL 111 (135)
T ss_pred EeCCcChhHHHHHHHHHHHHHhhhhcCeEEEEEEeCCCCchhHHHHHHhcCCCCeEEEcCH--HHHHhhCCccccCeEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
+|++|+|+
T Consensus 112 id~~g~v~ 119 (135)
T Q6AIL8_DESPS/2 112 VNRLGNVV 119 (135)
T ss_pred ECCCCcEE
No 20
>3ERW_C Sporulation thiol-disulfide oxidoreductase A; Thioredoxin-like fold, ResA-like fold, disulfide, dithiol, stoa, Oxidoreductase, Redox-active center, Sporulation; HET: MSE; 2.5A {Bacillus subtilis} SCOP: c.47.1.0
Probab=74.69 E-value=21 Score=23.52 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH------------------HHHHhCCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK------------------QQFSDWPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~------------------~~l~~~Pi~gL~Eviv 125 (133)
.|....|........+..+.++.......-+.++++....+.+.+. .....+.+.++-.+++
T Consensus 41 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 120 (145)
T 3ERW_C 41 FWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFL 120 (145)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCSSSEEEE
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCCCCeEEEEEEecChhcchHHHHHHHHhCCCcccEEECChHHHHHHcCCCcCCEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
+|++|+|+
T Consensus 121 id~~g~v~ 128 (145)
T 3ERW_C 121 LNEKGEIE 128 (145)
T ss_dssp ECTTCCEE
T ss_pred ECCCCcEE
No 21
>1GEF_D HOLLIDAY JUNCTION RESOLVASE; Holliday junction resolvase, HJC, HYDROLASE; HET: SO4; 2.0A {Pyrococcus furiosus} SCOP: c.52.1.18
Probab=72.03 E-value=20 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeE
Q FD01543135_043 23 NKRAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKI 60 (133)
Q Consensus 23 ~~r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~I 60 (133)
..++-..|..++..|.++||.+...+...+ ||+.+
T Consensus 2 ~~~G~~~E~~v~~~l~~~G~~v~~~~~~~~---~Dli~ 36 (123)
T 1GEF_D 2 YRKGAQAERELIKLLEKHGFAVVRSAGSKK---VDLVA 36 (123)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEBGGGSS---CSEEE
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEcCCCCC---CCEEE
No 22
>1KNG_A THIOL:DISULFIDE INTERCHANGE PROTEIN CYCY; thioredoxin fold, cytochrome c maturation, atomic resolution, OXIDOREDUCTASE; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=72.02 E-value=34 Score=23.13 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHH-hC---------------CCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFS-DW---------------PIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~-~~---------------Pi~gL~EvivI~ 127 (133)
++..|++....-+.....+.+-....+-.-+.+.+++..-.......... .+ .+.++-.++++|
T Consensus 46 lv~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~lid 125 (156)
T 1KNG_A 46 LVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVG 125 (156)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEEC
T ss_pred EEEEeCCCCHhhhhHHHHHHHhhcCCCEEEEEEEcccchHHHHHHHHHhCCCcceeeecCCCceehhhCCceeCeEEEEC
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 126 ~~g~v~ 131 (156)
T 1KNG_A 126 REGTIV 131 (156)
T ss_dssp TTSBEE
T ss_pred CCCcEE
No 23
>6GXG_A Tryparedoxin; Covalent Inhibitor, Photoreduction, Inhibitor-Induced Dimerization, Monomer-Dimer Mixture, OXIDOREDUCTASE; HET: FFN, GOL; 1.6A {Trypanosoma brucei brucei} SCOP: l.1.1.1, c.47.1.10
Probab=71.65 E-value=32 Score=22.89 Aligned_cols=70 Identities=10% Similarity=0.206 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhh-cCCCCeEEEECCCCCCCHHHH-----------------HHHHHhCCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVL-SGQTNSVVINMADTSVSIDEL-----------------KQQFSDWPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~-~~Qa~RiVlNL~ds~~~~~~l-----------------~~~l~~~Pi~gL~Eviv 125 (133)
.|....|.....-..+..+.++.. ...-.-+.+++++..-...+. ...+..+.+.++-.+++
T Consensus 38 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l 117 (145)
T 6GXG_A 38 FSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLIT 117 (145)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGTTHHHHHHHHHTCCSSSEEEE
T ss_pred EECccCHHHhchHHHHHHHHHHcCCCCCEEEEEEEcCCCcchhhhhhhcCCcccCCCCcccchhHHHHHHCCceecEEEE
Q ss_pred EcCC-CCcC
Q FD01543135_043 126 IDKM-GEPV 133 (133)
Q Consensus 126 I~k~-G~ii 133 (133)
||++ |+|+
T Consensus 118 id~~~g~i~ 126 (145)
T 6GXG_A 118 INADTGAII 126 (145)
T ss_dssp EETTTCCEE
T ss_pred EeCCCCcEE
No 24
>1OB8_B HOLLIDAY-JUNCTION RESOLVASE; HYDROLASE, ENZYME, HOMOLOGOUS RECOMBINATION, HOLLIDAY JUNCTION RESOLVING ENZYME, NUCLEASE, ARCHAEA, THERMOPHILE; HET: SO4, EDO; 1.8A {SULFOLOBUS SOLFATARICUS} SCOP: c.52.1.18
Probab=71.16 E-value=24 Score=26.02 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHHHHHHHCCCceEeCCCCCC--CCCCCeeE
Q FD01543135_043 24 KRAIWRENESAIILSQRGYNVEQNPSVPG--IKNPDFKI 60 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYdVeQnP~~~~--~knPDy~I 60 (133)
.++-.-|.+.+..|.++||.+...|.... ...||..+
T Consensus 4 ~kG~~~E~~~~~~l~~~G~~~~r~~~s~~~~~~~~Dli~ 42 (135)
T 1OB8_B 4 DIGKNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFA 42 (135)
T ss_dssp CTTHHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEE
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcEEE
No 25
>3OR5_A Thiol:disulfide interchange protein, thioredoxin family protein; PSI-II, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, OXIDOREDUCTASE; HET: MSE; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=69.95 E-value=39 Score=22.99 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhC-----------------------CCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDW-----------------------PIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~-----------------------Pi~gL 120 (133)
++..|++....-+..+..+.+-..+.....+.+-.-....+...+....... .+.++
T Consensus 38 ~l~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (165)
T 3OR5_A 38 IVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGI 117 (165)
T ss_dssp EEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTCSCSS
T ss_pred EEEEECCCCHHHHhhhhhHHHHHHHHhhCCEEEEEEEcccChHHHHHHHHHcCCCcceeecCHHHHHHhhhcccCCcccC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 118 P~~~~id~~g~v~ 130 (165)
T 3OR5_A 118 PTSFVIDASGNVS 130 (165)
T ss_dssp SEEEEECTTSBEE
T ss_pred cEEEEECCCCcEE
No 26
>PF18743.5 ; AHJR-like ; REase_AHJR-like
Probab=69.84 E-value=61 Score=23.47 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCceEeCCCCCC------CCCCCeeE----CCEEEeeeCCCC--CCHhHHHHHHHHHh
Q FD01543135_043 19 STEDNKRAIWRENESAIILSQRGYNVEQNPSVPG------IKNPDFKI----NGEVFDNIAPTT--SNVRNIYDRVNQKV 86 (133)
Q Consensus 19 ~~~~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~------~knPDy~I----eG~~fDcYaP~t--~~~r~I~~~i~~KV 86 (133)
+.......-..+..++..|.++||.|...+.... ...||... .--++.|-++.+ .....-...+.+-+
T Consensus 2 ~~~~~~~e~~~~~~v~~~l~~~G~~v~~~~~~~~~~~~~~~~~~Dlia~~~~~~~~iEvK~~~~~~~~~~~~l~~~~~~~ 81 (125)
T A0A1J1LKF2_9CY 2 STLTAKQEREQLLKLAENYCQKGYEIFLHPNLEELPDFLKSYRPDLIVRRGEEAVVIEVKSRASLNSYSDQYLQNLAQAV 81 (125)
T ss_pred CcchhHHHHHHHHHHHHHHHHCCcEEEecCCHHhCChhHhcCCCCEEEEeCCeEEEEEEEcccccCccCHHHHHHHHHHH
Q ss_pred hcCCCCeEEEECCCCCC-----------CHHHHHHHHHh
Q FD01543135_043 87 LSGQTNSVVINMADTSV-----------SIDELKQQFSD 114 (133)
Q Consensus 87 ~~~Qa~RiVlNL~ds~~-----------~~~~l~~~l~~ 114 (133)
.+...-|+-+-+-+... +..+|++.|.+
T Consensus 82 ~~~~~~~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (125)
T A0A1J1LKF2_9CY 82 EKHPGWRFEFVMINPEDITYSPKAEYSLQKDEIESQLQV 120 (125)
T ss_pred hhCCCcEEEEEEeCCCcCCCCCcccccCCHHHHHHHHHH
No 27
>3IA1_B Thio-disulfide isomerase/thioredoxin; OXIDOREDUCTASE, DISULFIDE ISOMERASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR; 1.76A {Thermus thermophilus}
Probab=69.68 E-value=49 Score=22.48 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCH--------------------HHHHHHHHhCCCCCCceE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSI--------------------DELKQQFSDWPIDGLDKI 123 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~--------------------~~l~~~l~~~Pi~gL~Ev 123 (133)
++..|++....-+.....+.+-..+....-+++.++...-.. +.-......+.+.++-.+
T Consensus 34 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 113 (154)
T 3IA1_B 34 VIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWT 113 (154)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTSTTSEECBCCSSCCHHHHHTTSSBCSSCEE
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHhhcccceeeccCCCCCchHHHHhcccccCCEE
Q ss_pred EEEcCCCCcC
Q FD01543135_043 124 IAIDKMGEPV 133 (133)
Q Consensus 124 ivI~k~G~ii 133 (133)
++||++|+|+
T Consensus 114 ~lid~~g~i~ 123 (154)
T 3IA1_B 114 FVVDREGKVV 123 (154)
T ss_dssp EEECTTSEEE
T ss_pred EEECCCCcEE
No 28
>2LJA_A Putative thiol-disulfide oxidoreductase; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC; NMR {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=69.49 E-value=37 Score=23.11 Aligned_cols=70 Identities=11% Similarity=0.234 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHH----------------HHHhCCCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQ----------------QFSDWPIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~----------------~l~~~Pi~gL~EvivI~ 127 (133)
.|....|.....-..+..+.++....+..-+.+..++..-....... ....+.+.++-.++++|
T Consensus 37 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~id 116 (152)
T 2LJA_A 37 VWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLD 116 (152)
T ss_dssp ECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEEC
T ss_pred EEcCCChhhhhhHHHHHHHHHHHCCCCeEEEEEEeCCCHHHHHHHHHhcCcCCceeeecCCchHHHhhcccCCCeEEEEC
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 117 ~~g~v~ 122 (152)
T 2LJA_A 117 RDGKII 122 (152)
T ss_dssp TTSCEE
T ss_pred CCCCEE
No 29
>4TKD_C Holliday junction resolvase Hjc; HYDROLASE; 2.01A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=69.48 E-value=23 Score=26.02 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCceEeCCCCCC---CCCCCeeE
Q FD01543135_043 19 STEDNKRAIWRENESAIILSQRGYNVEQNPSVPG---IKNPDFKI 60 (133)
Q Consensus 19 ~~~~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~---~knPDy~I 60 (133)
+.....++...|.+.+..|.++||.|...|...+ ...||...
T Consensus 1 m~~~~~~G~~~E~~v~~~l~~~G~~v~~~~~~~~~~~~~~~Dii~ 45 (141)
T 4TKD_C 1 MNAKKRKGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIA 45 (141)
T ss_dssp --------CHHHHHHHHHHHHTTCEEEECCSSCCCSSSCCCSEEE
T ss_pred CCccccchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCCCEEE
No 30
>1JFU_B THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA; THIOREDOXIN-LIKE, DOUBLE DISULFIDE BRIDGE, MEMBRANE PROTEIN; 1.6A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=69.22 E-value=50 Score=22.98 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCC-CeEEEECCCCCCCHHHHHHHHHhCCCC-----------------------C
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQT-NSVVINMADTSVSIDELKQQFSDWPID-----------------------G 119 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa-~RiVlNL~ds~~~~~~l~~~l~~~Pi~-----------------------g 119 (133)
++..|++....-+.....+.+-..+... .-.++-+.....+.+.+.+.+....+. +
T Consensus 64 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (186)
T 1JFU_B 64 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALG 143 (186)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHHTTCCSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCcchHHHHHHcccccccccccchHHHHHHHHHHhhhhC
Q ss_pred CceEEEEcCCCCcC
Q FD01543135_043 120 LDKIIAIDKMGEPV 133 (133)
Q Consensus 120 L~EvivI~k~G~ii 133 (133)
+-.+++||++|+|+
T Consensus 144 ~P~~~lid~~g~v~ 157 (186)
T 1JFU_B 144 MPTSVLVDPQGCEI 157 (186)
T ss_dssp SSEEEEECTTSBEE
T ss_pred CCEEEEECCCCcEE
No 31
>2FY6_A Peptide methionine sulfoxide reductase msrA/msrB; PILB, Cytochrome maturation protein, Thioredoxin, Methionine sulfoxide reductase, OXIDOREDUCTASE; 1.9A {Neisseria meningitidis} SCOP: c.47.1.10
Probab=68.88 E-value=9.2 Score=25.02 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECC---------------------CCCCCHHHHHHHHHhCCCCCCce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMA---------------------DTSVSIDELKQQFSDWPIDGLDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~---------------------ds~~~~~~l~~~l~~~Pi~gL~E 122 (133)
.|....|.....-..+..+.++.......-+.++++ .+++-.+.-......+.+.++-.
T Consensus 30 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 109 (143)
T 2FY6_A 30 FWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPS 109 (143)
T ss_dssp EECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSE
T ss_pred EECCCCHHHHHHHHHHHHHHHHhhhCCCEEEEEeCCCcccccccccHHHHHccCCCCCCceecCCCChhHHHcCceecCe
Q ss_pred EEEEcCCCCcC
Q FD01543135_043 123 IIAIDKMGEPV 133 (133)
Q Consensus 123 vivI~k~G~ii 133 (133)
+++||++|+|+
T Consensus 110 ~~~id~~g~i~ 120 (143)
T 2FY6_A 110 WALIGKDGDVQ 120 (143)
T ss_dssp EEEECTTSCEE
T ss_pred EEEEcCCCCEE
No 32
>3LWA_A Secreted thiol-disulfide isomerase; Thiol-disulfide, isomerase, thioredoxin, Corynebacterium, glutamicum, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure; HET: MSE; 1.75A {Corynebacterium glutamicum}
Probab=68.00 E-value=45 Score=23.88 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhc------CCCCeEEEECCCCCCCHHHHHHHHHhCC---------------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLS------GQTNSVVINMADTSVSIDELKQQFSDWP--------------------- 116 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~------~Qa~RiVlNL~ds~~~~~~l~~~l~~~P--------------------- 116 (133)
.|....|.......-+..+.++... ..-.-+.+++++. +.+.+...+.+..
T Consensus 66 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (183)
T 3LWA_A 66 AWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY--SRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVP 143 (183)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC--CHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCC
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEcCCC--CHHHHHHHHHHcCCCCceecCCcccchhhcCCCC
Q ss_pred CCCCceEEEEcCCCCcC
Q FD01543135_043 117 IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 117 i~gL~EvivI~k~G~ii 133 (133)
+.++-.+++||++|+|+
T Consensus 144 ~~~~P~~~lid~~g~v~ 160 (183)
T 3LWA_A 144 ASVIPTTIVLDKQHRPA 160 (183)
T ss_dssp TTCCSEEEEECTTSCEE
T ss_pred cccCCEEEEECCCCcEE
No 33
>7FC2_A Glutathione peroxidase 6; BIOSYNTHETIC PROTEIN; HET: SO4; 2.0A {Mus musculus}
Probab=67.79 E-value=63 Score=24.34 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHH------hCC-----------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFS------DWP----------------- 116 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~------~~P----------------- 116 (133)
.|....|.. ..-..+..+.++.......-|.++++. ..-+.+++.+.+. ++.
T Consensus 68 f~~~~C~~c-~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (221)
T 7FC2_A 68 NVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQ 146 (221)
T ss_dssp EECSSSGGG-GGHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCC
T ss_pred EecCCChhH-hhHHHHHHHHHHHhhCCcEEEEEecCcccccCCCChHHHHHHhhccCCCCCcCCCcceeecCCcCCccHH
Q ss_pred --------------------------------CCCCceEEEEcCCCCcC
Q FD01543135_043 117 --------------------------------IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 117 --------------------------------i~gL~EvivI~k~G~ii 133 (133)
+.+.-.+++||++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~ 195 (221)
T 7FC2_A 147 KVFSFLKNSCPPTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPV 195 (221)
T ss_dssp HHHHHHHHTSCCSCSCCCCGGGBCCSSCCTTSCCSTTCEEEECTTSCEE
T ss_pred HHHHHHhccCCCchhhcCCcchhccCcccccCcccceEEEEECCCCcEE
No 34
>3EWL_A uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: MSE; 2.0A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=67.45 E-value=51 Score=21.67 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHH---HhhcCCCCeEEEECCCCCCCHHHHHHHH--------------------HhCCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQ---KVLSGQTNSVVINMADTSVSIDELKQQF--------------------SDWPIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~---KV~~~Qa~RiVlNL~ds~~~~~~l~~~l--------------------~~~Pi~gL 120 (133)
++-.|++....-......+.+ -........+.+-.-...-+.+.+...+ ..+.+.+.
T Consensus 31 ll~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T 3EWL_A 31 MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRAT 110 (142)
T ss_dssp EEEECCSSCHHHHHHHHHHHTCHHHHHHHHTTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSS
T ss_pred EEEEeCCCCHHHHHHHHHHhhChhhHhhHhcCcEEEEEEecCCCHHHHHHHHHhCCCCceeEecCCCccchhhhccCcCC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.++++|++|+|+
T Consensus 111 P~~~l~d~~g~v~ 123 (142)
T 3EWL_A 111 PTIYLLDGRKRVI 123 (142)
T ss_dssp SEEEEECTTCBEE
T ss_pred CEEEEECCCCeEE
No 35
>2B1L_B Thiol:disulfide interchange protein dsbE; Comparison with the E.coli CcmG, folding topology change, OXIDOREDUCTASE; 1.9A {Escherichia coli} SCOP: c.47.1.10
Probab=67.11 E-value=48 Score=21.27 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHH-hCCC---------------CCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFS-DWPI---------------DGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~-~~Pi---------------~gL~EvivI~ 127 (133)
++..|+|....-......+.+-... +..-+.++++++.-.......... .+|+ .+.-.++++|
T Consensus 16 ~v~f~~~~c~~c~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~d 94 (129)
T 2B1L_B 16 LLNVWATWCPTCRAEHQYLNQLSAQ-GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID 94 (129)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHT-TCCEEEEECSSCHHHHHHHHHHHCCCCSEEECBTBEEESCCCCSCCSSEEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHHHHhCCCceEEEeCCCCceeEeecccCCCEEEEEC
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+++
T Consensus 95 ~~g~i~ 100 (129)
T 2B1L_B 95 GNGIIR 100 (129)
T ss_dssp TTSCEE
T ss_pred CCCcEE
No 36
>1Z5Y_E Thiol:disulfide interchange protein dsbE; DSBD, N-TERMINAL DOMAIN, IMMUNOGLOBULIN-LIKE, CCMG, THIOREDOXIN-LIKE, DISULFIDE-LINKED, OXIDOREDUCTASE-BIOSYNTHETIC PROTEIN COMPLEX; HET: EDO; 1.94A {Escherichia coli} SCOP: c.47.1.10
Probab=66.49 E-value=59 Score=22.03 Aligned_cols=69 Identities=17% Similarity=0.032 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHH----------------HHHHHhCCCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDEL----------------KQQFSDWPIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l----------------~~~l~~~Pi~gL~EvivI~ 127 (133)
++..|++....-......+.+=.++ ...-+.++++++.-...+. ......+.+.++-.++++|
T Consensus 30 ~l~f~~~~c~~c~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~ 108 (149)
T 1Z5Y_E 30 LLNVWATWCPTSRAEHQYLNQLSAQ-GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLID 108 (149)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHT-TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBSEEEEEC
T ss_pred EEEEEccCChhHHHHHHHHHHHHHC-CCEEEEEecCCcHHHHHHHHHHhCCCCcEEEecCCcchhhhhccCCCCEEEEEc
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 109 ~~g~i~ 114 (149)
T 1Z5Y_E 109 GNGIIR 114 (149)
T ss_dssp TTSCEE
T ss_pred CCCeEE
No 37
>3F9U_B Putative exported cytochrome C biogenesis-related protein; exported cytochrome C biogenesis-related protein, Bacteroides fragilis, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for; HET: MSE, NO3; 2.2A {Bacteroides fragilis NCTC 9343}
Probab=64.25 E-value=31 Score=23.59 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHH---HHHHHHhhcCCCCeEEEECCCCCCCHHHHHHH-------------------HHhCCCCCCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIY---DRVNQKVLSGQTNSVVINMADTSVSIDELKQQ-------------------FSDWPIDGLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~---~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~-------------------l~~~Pi~gL~ 121 (133)
.|..+.+........+ ..+.++. ...-.-|.+++++..-....+... ...+.+.++-
T Consensus 54 f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 132 (172)
T 3F9U_B 54 FTGYGCVNCRKMELAVWTDPKVSSII-NNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQP 132 (172)
T ss_dssp EECTTCHHHHHHCCCCCTSHHHHHHH-HHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSCCCSS
T ss_pred eeCCCChhHHHHhhhhhcCHHHHHHh-cCCEEEEEEEecCCCCCCchhhccccCCcceeeecCchhhHHHHHHhCCCCCC
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 133 ~~~lid~~g~i~ 144 (172)
T 3F9U_B 133 FYVLIDNEGNPL 144 (172)
T ss_dssp EEEEECTTSCBS
T ss_pred EEEEEcCCCCee
No 38
>2F9S_A Thiol-disulfide oxidoreductase resA; Thioredoxin-like protein, Oxidoreductase; HET: MSE; 1.401A {Bacillus subtilis} SCOP: c.47.1.10
Probab=63.46 E-value=28 Score=24.15 Aligned_cols=70 Identities=11% Similarity=0.226 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHH---------------HHHHHhCCCCCCceEEEEcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDEL---------------KQQFSDWPIDGLDKIIAIDK 128 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l---------------~~~l~~~Pi~gL~EvivI~k 128 (133)
.|+...|........+..+.++.......-++++.+++.-....+ ......+.+.++-.+++||+
T Consensus 33 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~P~~~lid~ 112 (151)
T 2F9S_A 33 FWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112 (151)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhhCCeEEEEEEcCccHHHHHHHHHHhCCCeeEEeCCChHHHHhcCCCCCCEEEEECC
Q ss_pred CCCcC
Q FD01543135_043 129 MGEPV 133 (133)
Q Consensus 129 ~G~ii 133 (133)
+|+|+
T Consensus 113 ~g~i~ 117 (151)
T 2F9S_A 113 EGKVV 117 (151)
T ss_dssp TSEEE
T ss_pred CCcEE
No 39
>4K9Z_A Putative thiol-disulfide oxidoreductase; PUTATIVE DISULFIDE OXIDOREDUCTASE, NYSGRC, Structural Genomics, New York Structural Genomics Research Consortium, PSI-Biology, OXIDOREDUCTASE; 1.8A {Bacteroides vulgatus} SCOP: c.47.1.0
Probab=63.21 E-value=53 Score=22.67 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH---------------HHHHhCCCCCCceEEEEcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK---------------QQFSDWPIDGLDKIIAIDK 128 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~---------------~~l~~~Pi~gL~EvivI~k 128 (133)
.|+...|........+..+.++.......-|.++.+++.-...... .....+.+.++-.++++|+
T Consensus 54 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~ 133 (168)
T 4K9Z_A 54 LWATWCGPCIQESPAFEALGKKYVGKDIVFLPVSTDTTTKPWLRYLDGHKKELTQYHSNDVALKESWAIMYIPRFILIDK 133 (168)
T ss_dssp EECTTCHHHHHTHHHHHHHHHHTTTSSEEEEEEECCSSHHHHHHHHHHSCCSSCCEECCCHHHHHTSCCCSSSEEEEECT
T ss_pred EECCCChHhHHhcHHHHHHHHHhCCCCEEEEEEecCCCCchHHHhhhcccccceeeeCCcHHHHHHhccccCCEEEEECC
Q ss_pred CCCcC
Q FD01543135_043 129 MGEPV 133 (133)
Q Consensus 129 ~G~ii 133 (133)
+|+|+
T Consensus 134 ~g~i~ 138 (168)
T 4K9Z_A 134 DFNIV 138 (168)
T ss_dssp TSBEE
T ss_pred CCCEE
No 40
>3FKF_D thiol-disulfide oxidoreductase; thiol disulfide oxidoreductase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE; HET: ACT, MSE; 2.2A {Bacteroides fragilis}
Probab=62.83 E-value=66 Score=21.32 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHh-hcCCCCeEEEECCCCCCCHHHHHH------------------HHHhCCCCCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKV-LSGQTNSVVINMADTSVSIDELKQ------------------QFSDWPIDGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV-~~~Qa~RiVlNL~ds~~~~~~l~~------------------~l~~~Pi~gL~Evi 124 (133)
.|....+........+..+.++. ......-+.+..+++.-...+..+ ....+.+.++-.++
T Consensus 40 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 119 (148)
T 3FKF_D 40 FWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNI 119 (148)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEEECSCGGGCHHHHHTTCCSSSEEE
T ss_pred EeCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEEecCCHHHHHHHHHhcCCCHHHeeecCCCCcHHHHHhCCCCCCeEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++|++|+|+
T Consensus 120 lid~~g~i~ 128 (148)
T 3FKF_D 120 LLSPTGKIL 128 (148)
T ss_dssp EECTTSBEE
T ss_pred EECCCCCEE
No 41
>3GHF_A Septum site-determining protein minC; STRUCTURAL GENOMICS, CELL DIVISION, Cell cycle, Septation, PSI-2, Protein Structure Initiative, New York SGX Research Center; HET: CIT; 2.2A {Salmonella typhimurium LT2}
Probab=62.62 E-value=91 Score=22.86 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCeeECCEEEe--eeCCCCCCHhHHHHHHHHHhhcC----CCCeEEEECCC--CCCCHHHHHHHHHhCCC
Q FD01543135_043 54 KNPDFKINGEVFD--NIAPTTSNVRNIYDRVNQKVLSG----QTNSVVINMAD--TSVSIDELKQQFSDWPI 117 (133)
Q Consensus 54 knPDy~IeG~~fD--cYaP~t~~~r~I~~~i~~KV~~~----Qa~RiVlNL~d--s~~~~~~l~~~l~~~Pi 117 (133)
...-+.|.|.-+. +.-..+.+...|.+.+.+|+.+. +...|+|++.. +..++.+|.+.|+++.+
T Consensus 4 ~~~~v~lKg~~~~l~~i~~~~~~~~~l~~~L~~~l~~~~~ff~~~~vvld~~~~~~~~~l~~L~~~l~~~gl 75 (120)
T 3GHF_A 4 SNTPIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGL 75 (120)
T ss_dssp ---CCCCCCCCCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTC
T ss_pred CCCCEEEecccccEEEEEecCCCHHHHHHHHHHHHHcCcHHHhCCCEEEEccCCCCCCcHHHHHHHHHHcCC
No 42
>4GRF_A Putative thiol-disulfide oxidoreductase; OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics; HET: GSH; 1.76A {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=62.52 E-value=39 Score=22.54 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHH------------------HHHHHhCCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDEL------------------KQQFSDWPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l------------------~~~l~~~Pi~gL~Eviv 125 (133)
.|....|.....-..+..+.++.......-+.+..+.......++ ...+..+.+.++-.+++
T Consensus 36 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l 115 (152)
T 4GRF_A 36 FWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIIL 115 (152)
T ss_dssp EECTTCHHHHHTHHHHHHHHHHHTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECCHHHHHHHHHHTTCCSSCEEEE
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhhhcCeEEEEEEcCCCHHHHHHHHHHcCCcceeeecCchhHHHHHHHcCCCccCEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
||++|+|+
T Consensus 116 id~~g~i~ 123 (152)
T 4GRF_A 116 VDPEGKIV 123 (152)
T ss_dssp ECTTSBEE
T ss_pred ECCCCCEE
No 43
>7AOO_C Plasmoredoxin; Malaria, Plasmodium falciparum, thioredoxin superfamily, redox metabolism, OXIDOREDUCTASE; HET: PEG, P6G, PGE; 1.6A {Plasmodium falciparum (isolate 3D7)}
Probab=62.41 E-value=82 Score=22.28 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcC-CCCeEEEECCCCCCCHHHHHH--------------HHHhCCCCCCceEEEEcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSG-QTNSVVINMADTSVSIDELKQ--------------QFSDWPIDGLDKIIAIDK 128 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~-Qa~RiVlNL~ds~~~~~~l~~--------------~l~~~Pi~gL~EvivI~k 128 (133)
++..+++....-+.....+.+-.+.. ...-+.++.+++.-...+..+ ....+.+.++-.+++||+
T Consensus 52 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~lid~ 131 (179)
T 7AOO_C 52 GLFFGASWCKYCVTFIDSLNIFKKNFPNVEIIYIPFDRTYQEYQSFLKNTNFYALPFDNYLYICKKYQIKNLPSFMLITP 131 (179)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHTCCSEECCSSCCHHHHHHHTCCBSSEEEEECT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHhhCCcccccCCchhHHHHHcCCCCCCEEEEECC
Q ss_pred CCCcC
Q FD01543135_043 129 MGEPV 133 (133)
Q Consensus 129 ~G~ii 133 (133)
+|+|+
T Consensus 132 ~g~i~ 136 (179)
T 7AOO_C 132 NNNIL 136 (179)
T ss_dssp TSCEE
T ss_pred CCCEE
No 44
>4NMU_B Thiol-disulfide oxidoreductase ResA; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; HET: ACY, EDO, MSE, GOL; 1.35A {Bacillus anthracis} SCOP: c.47.1.0
Probab=62.05 E-value=70 Score=21.35 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCC------------------CCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWP------------------IDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~P------------------i~gL~Eviv 125 (133)
++-.|++....-+..+..+.+-....+..++.+-.-+..-+...+...+.++. +.++-.+++
T Consensus 39 ~v~~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 118 (147)
T 4NMU_B 39 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDADETDIAVKNFVNQYGLKFPVAIDKGQKIIGTYGVGPLPTSFL 118 (147)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHHTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECGGGHHHHHTTCCSSCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHccCCeEEEEEeCCCCHHHHHHHHHHhCCCCcEEEcCCCcchhhcccCcccEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
||++|+|+
T Consensus 119 id~~g~i~ 126 (147)
T 4NMU_B 119 IDKDGKVV 126 (147)
T ss_dssp ECTTSBEE
T ss_pred ECCCCCEE
No 45
>PF08923.14 ; MAPKK1_Int ; Mitogen-activated protein kinase kinase 1 interacting
Probab=61.72 E-value=13 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHhC--CCCCCceEEEEcCCCCcC
Q FD01543135_043 107 ELKQQFSDW--PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 107 ~l~~~l~~~--Pi~gL~EvivI~k~G~ii 133 (133)
+|.+.|.+. .++|+..+++++++|.++
T Consensus 2 ~l~~~l~~~~~~~~gv~~~~i~~~dG~~i 30 (120)
T Q8WQG5_CAEEL/1 2 NVQQELEELMLTYEGVCAIFITDHDGGLI 30 (120)
T ss_pred cHHHHHHHHHhhCCCeeEEEEECCCCcEE
No 46
>PF05209.17 ; MinC_N ; Septum formation inhibitor MinC, N-terminal domain
Probab=61.05 E-value=66 Score=20.73 Aligned_cols=46 Identities=9% Similarity=0.253 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCCHhHHHHHHHHHhhcC----CCCeEEEECC--C---CCCCHHHHHHHHHhCCC
Q FD01543135_043 72 TSNVRNIYDRVNQKVLSG----QTNSVVINMA--D---TSVSIDELKQQFSDWPI 117 (133)
Q Consensus 72 t~~~r~I~~~i~~KV~~~----Qa~RiVlNL~--d---s~~~~~~l~~~l~~~Pi 117 (133)
+.+...+...+.+|+.+. ....|+|++. + +.....+|.+.|.++.+
T Consensus 17 ~~~~~~l~~~L~~~l~~~~~f~~~~~v~ld~~~~~~~~~~~~~~~l~~~l~~~~l 71 (73)
T D9SEY7_GALCS/7 17 TTNLSDLKRELSVRLAQTPDFFVSTPIVLELSGIAELEQGLDFVNLVSFMQSHGM 71 (73)
T ss_pred cCCHHHHHHHHHHHHhcCchhhcCCcEEEEcchhhhhccCCCHHHHHHHHHHCCC
No 47
>PF01870.22 ; Hjc ; Archaeal holliday junction resolvase (hjc)
Probab=60.99 E-value=65 Score=20.69 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHHHHCCCceEeCCCCCCCCCCCeeE----CCEEEeeeCCCC---CCHhHHHHHHHHHhhcCCCCeEEE
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVPGIKNPDFKI----NGEVFDNIAPTT---SNVRNIYDRVNQKVLSGQTNSVVI 96 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~~~knPDy~I----eG~~fDcYaP~t---~~~r~I~~~i~~KV~~~Qa~RiVl 96 (133)
|..++..|.++||.+..++. .+.+|... ..-.+.|-.-.. .-...-...+.+.....++.-+++
T Consensus 3 E~~~~~~l~~~G~~~~~~~~---~~~~Dli~~~~~~~~~vevK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (87)
T HJC_METJA/10-9 3 ERELKRLLEKEGFAVIRSAG---SKGVDLIAGRKGEVLIFECKTSSKTKFYINKEDIEKLISFSEIFGGKPYLA 73 (87)
T ss_pred HHHHHHHHHHCCCEEEEcCC---CCCCcEEEEECCEEEEEEEEecCCCceecCHHHHHHHHHHHHHhCCeEEEE
No 48
>3CMI_A Peroxiredoxin HYR1; Thioredoxin-like fold, Oxidoreductase, Peroxidase, Redox-active center; 2.02A {Saccharomyces cerevisiae} SCOP: c.47.1.0
Probab=60.36 E-value=85 Score=21.82 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCC--CCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHH------------------------
Q FD01543135_043 64 VFDNIAPTT--SNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFS------------------------ 113 (133)
Q Consensus 64 ~fDcYaP~t--~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~------------------------ 113 (133)
++..|++.. ...-..+..+..+.....-.-|.+.++. ...+..++.+.+.
T Consensus 36 lv~f~~~~c~~c~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (171)
T 3CMI_A 36 LIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVY 115 (171)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTTBCHHH
T ss_pred EEEEecCCCCccchHHHHHHHHHHHhhcCcEEEEEEcCcCCCCCCCCHHHHHHHHHhhhCCCCceeeeecCCCCCCchhH
Q ss_pred ------------hCCCCCCceEEEEcCCCCcC
Q FD01543135_043 114 ------------DWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 114 ------------~~Pi~gL~EvivI~k~G~ii 133 (133)
.+.+.+.-.+++||++|+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 147 (171)
T 3CMI_A 116 KFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVY 147 (171)
T ss_dssp HHHHHHSCCSSSCCSCCSTTCEEEECSSSCEE
T ss_pred HHhhhccCCccCcccceeccceeeECCCCcEe
No 49
>2JU5_A Thioredoxin Disulfide Isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=59.89 E-value=89 Score=21.87 Aligned_cols=70 Identities=7% Similarity=0.069 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EEeee-CCCCCCHhHHHHHH---HHHhhcCCCCeEEEECCCCCCCH------HHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNI-APTTSNVRNIYDRV---NQKVLSGQTNSVVINMADTSVSI------DELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcY-aP~t~~~r~I~~~i---~~KV~~~Qa~RiVlNL~ds~~~~------~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++..| ++....-+.....+ .+........-+++.++...-.. +.-......+.+.++-.++++|++|+++
T Consensus 51 ll~f~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~lid~~g~i~ 130 (154)
T 2JU5_A 51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQL 130 (154)
T ss_dssp EEEEECTTTCHHHHHHCCCCCTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCHHHHHHcCCcEEEEEecCCccCCCCHHHHHHHHHHHHHhCCcCCCEEEEECCCCCEE
No 50
>3HJH_A Transcription-repair-coupling factor; MFD, MUTATION FREQUENCY DECLINE, TRANSCRIPTION-COUPLED DNA REPAIR, TRANSCRIPTION-REPAIR COUPLING FACTOR, ATP-binding, DNA damage, DNA repair, DNA-binding; 1.95A {Escherichia coli} SCOP: c.37.1.19
Probab=59.53 E-value=26 Score=30.73 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~ 75 (133)
.+-+..|.+.||.-+..-. ..-+|.+-|.++|+|+|....|
T Consensus 139 ~~l~~~L~~~GY~r~~~v~----~~Gefa~RG~IvDifp~~~~~P 179 (483)
T 3HJH_A 139 DALRTQLDSAGYRHVDQVM----EHGEYATRGALLDLFPMGSELP 179 (483)
T ss_dssp HHHHHHHHHTTCEECSSCC----STTEEEEETTEEEECCBTCSSC
T ss_pred HHHHHHHHHCCCcccccee----cCCceEecCCEEEEecCCCCCC
No 51
>3EUR_A uncharacterized protein; PSI2, MCSG, conserved protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function; HET: MSE; 1.3A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=59.06 E-value=80 Score=21.08 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHH--HhhcCCCCe-EEEECCCCCCCHHHHHHHH--------------------HhCCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQ--KVLSGQTNS-VVINMADTSVSIDELKQQF--------------------SDWPIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~--KV~~~Qa~R-iVlNL~ds~~~~~~l~~~l--------------------~~~Pi~gL 120 (133)
++..+++....-+.....+.+ ...+...+. +.+-.-...-+.+.+.+.+ ..+.+.+.
T Consensus 35 ~l~~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (142)
T 3EUR_A 35 LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAI 114 (142)
T ss_dssp EEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTC
T ss_pred EEEEeCCCChHHHHHHHHHhhChhhccchhcCCeEEEEEeCCCChHHHHHHhhhcccccccccChhHhchhhhhcCCCCC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 115 P~~~~id~~g~i~ 127 (142)
T 3EUR_A 115 PTLYLLDKNKTVL 127 (142)
T ss_dssp SEEEEECTTCBEE
T ss_pred CEEEEECCCCeEE
No 52
>PF18225.5 ; AbfS_sensor ; Sensor histidine kinase (AbfS) sensor domain
Probab=58.49 E-value=36 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.++|...|..||-..-..+++||.+|+-+
T Consensus 6 ~~al~~~l~~~~~~~~~~~~vid~~g~~l 34 (65)
T B3PFT7_CELJU/6 6 TQQLTQDLRAMPNWSLRFVYIVDRNNQDL 34 (65)
T ss_pred HHHHHHHHHhCCcccCccEEEECCCCCCc
No 53
>3P7X_C Probable thiol peroxidase; THIOREDOXIN FOLD, OXIDOREDUCTASE, PEROXIDASE; HET: SO4, PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=57.96 E-value=44 Score=23.19 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcCCCCeEEEECCC---------------CCCCHHH-HHHHHHhCCCCC------C
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSGQTNSVVINMAD---------------TSVSIDE-LKQQFSDWPIDG------L 120 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d---------------s~~~~~~-l~~~l~~~Pi~g------L 120 (133)
++..+++. ...-......+.+-.++..-.-|.++.++ +++-.+. -......+.+.. .
T Consensus 50 ~l~f~~~~~c~~c~~~~~~l~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (166)
T 3P7X_C 50 LISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLA 129 (166)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHSCTTTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEEC
T ss_pred EEEEecCCCcccCHHHHHHHHHchhhCCcEEEEEECCCHHHHHHHHHHhCCCceEEecCcccccHHHHhCcchHHHhhhc
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 130 p~~~lid~~g~i~ 142 (166)
T 3P7X_C 130 RAVFVLDADNKVV 142 (166)
T ss_dssp CEEEEECTTCBEE
T ss_pred cEEEEECCCCEEE
No 54
>6N5U_A Protein SCO1 homolog 1, mitochondrial; thioredoxin fold, metal ion, reduced form, metallochaperone, HCC1, METAL BINDING PROTEIN; 2.66A {Arabidopsis thaliana} SCOP: c.47.1.0
Probab=57.33 E-value=88 Score=21.03 Aligned_cols=70 Identities=7% Similarity=0.022 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcC---CCCeEEEECCCCCCCHHHHH---------------------HHHHhCCCC
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSG---QTNSVVINMADTSVSIDELK---------------------QQFSDWPID 118 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~---Qa~RiVlNL~ds~~~~~~l~---------------------~~l~~~Pi~ 118 (133)
.|....+. ....-..+..+.++.... +..-+.++.+...-+.+.+. .....+.+.
T Consensus 37 f~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (170)
T 6N5U_A 37 FGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVY 116 (170)
T ss_dssp EECTTCSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEESCTTTCCHHHHHHHHTTTCTTCEEEECCHHHHHHHHHHTTCC
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHccCCCeEEEEEEEcCCCCCHHHHHHHHHHHCCceEEeeCCHHHHHHHHHHcCce
Q ss_pred CCce--------------EEEEcCCCCcC
Q FD01543135_043 119 GLDK--------------IIAIDKMGEPV 133 (133)
Q Consensus 119 gL~E--------------vivI~k~G~ii 133 (133)
.... +++||++|+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~lid~~g~i~ 145 (170)
T 6N5U_A 117 YMKTEEEDSDYLVDHSIVMYLMSPEMNFV 145 (170)
T ss_dssp EEEEECSSSSEEEEECCCEEEECTTCCEE
T ss_pred eeecCCCCCcceeecceEEEEECCCCcEE
No 55
>PF21482.1 ; GLD3_KH3 ; GLD-3, KH3 domain
Probab=57.16 E-value=50 Score=23.76 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=0.0 Template_Neff=2.000
Q ss_pred EEEECCCCCCCHHHHHHHHHhCCCCCCceEEEE---cCCCCcC
Q FD01543135_043 94 VVINMADTSVSIDELKQQFSDWPIDGLDKIIAI---DKMGEPV 133 (133)
Q Consensus 94 iVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI---~k~G~ii 133 (133)
|++.|.+-.++..+|++...+.||.+.+=-.|- +|+|+++
T Consensus 5 v~MsLs~mk~~~~elq~~v~qNpIqNVemsfi~~~~eknG~~~ 47 (68)
T G0N9S0_CAEBE/1 5 IFMSLSKMRNPATDIHTFVTENPIQNVDISSIESPPDKNGKGG 47 (68)
T ss_pred EEeehhhcCCChhHHHHHHhhCCCCceEEEEeecCCCCCCccc
No 56
>3FW2_C thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreductase, TlpA-like family, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: ACT, MSE; 1.74A {Bacteroides thetaiotaomicron} SCOP: c.47.1.0, l.1.1.1
Probab=56.16 E-value=90 Score=20.80 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCH--hHHHHHHHHHhhcC-CCCeEEEECCCCCCCHHHHH---------------------HHHHhCCCCC
Q FD01543135_043 64 VFDNIAPTTSNV--RNIYDRVNQKVLSG-QTNSVVINMADTSVSIDELK---------------------QQFSDWPIDG 119 (133)
Q Consensus 64 ~fDcYaP~t~~~--r~I~~~i~~KV~~~-Qa~RiVlNL~ds~~~~~~l~---------------------~~l~~~Pi~g 119 (133)
++..+++....- ......+.+-.+.. +...+.+-.-...-+.+.+. .....+.+.+
T Consensus 37 ~l~f~~~~c~~c~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (150)
T 3FW2_C 37 LINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK 116 (150)
T ss_dssp EEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCCTTSHHHHHTTCCS
T ss_pred EEEEecccCcchhhhhchHHHHHHHHHhccCCCEEEEEEECCCCHHHHHHHHHhCCCCHHHccccCCCCcHHHHheeecc
Q ss_pred CceEEEEcCCCCcC
Q FD01543135_043 120 LDKIIAIDKMGEPV 133 (133)
Q Consensus 120 L~EvivI~k~G~ii 133 (133)
+-.+++||++|+|+
T Consensus 117 ~P~~~lid~~g~i~ 130 (150)
T 3FW2_C 117 IPANILLSSDGKIL 130 (150)
T ss_dssp SSEEEEECTTCBEE
T ss_pred cCeEEEECCCCcEE
No 57
>7K58_G Dynein light chain roadblock; outer-arm dynein, axonemal dynein, microtubule doublet, STRUCTURAL PROTEIN; HET: ATP, ADP; 3.5A {Tetrahymena thermophila}
Probab=56.05 E-value=29 Score=22.45 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.++.+.|.+ ++|.+-+++++++|.++
T Consensus 3 ~~~~~l~~l~~--~~gv~~~~~~~~dG~~i 30 (96)
T 7K58_G 3 EVEDTLNRIKT--HKTVLGYLIVNSEGGVV 30 (96)
T ss_dssp SHHHHHHHHHH--SSSCCEEEEEETTTEEE
T ss_pred hHHHHHHHHHc--CCCeeEEEEECCCCcEE
No 58
>2GGT_A SCO1 protein homolog, mitochondrial; Copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, Nickel, Disuplhide, Mitochondrion, CHAPERONE; 2.4A {Homo sapiens} SCOP: c.47.1.10
Probab=55.65 E-value=93 Score=20.77 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhc----CCCCeEEEECCCCCCCHHHH---------------------HHHHHhCCC
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLS----GQTNSVVINMADTSVSIDEL---------------------KQQFSDWPI 117 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~----~Qa~RiVlNL~ds~~~~~~l---------------------~~~l~~~Pi 117 (133)
.|....+. ....-.-+..+.++... ....-+.++.+....+.+.+ ......+.+
T Consensus 30 ~~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (164)
T 2GGT_A 30 FGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRV 109 (164)
T ss_dssp EECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhhccCCCCCCceEEEEEecCCCCCHHHHHHHHHHhCCceEecCCCHHHHHHHHHHcCc
Q ss_pred CCCc---------------eEEEEcCCCCcC
Q FD01543135_043 118 DGLD---------------KIIAIDKMGEPV 133 (133)
Q Consensus 118 ~gL~---------------EvivI~k~G~ii 133 (133)
.... .+++||++|+|+
T Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~lid~~g~i~ 140 (164)
T 2GGT_A 110 YYSPGPKDEDEDYIVDHTIIMYLIGPDGEFL 140 (164)
T ss_dssp CEEEEEECTTSCEEEEECCEEEEECTTSCEE
T ss_pred eecCCCCCCCCcceeecceEEEEECCCCcee
No 59
>4FO5_A thioredoxin-like protein; AhpC/TSA family protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE; HET: MSE; 2.02A {Parabacteroides distasonis}
Probab=54.97 E-value=97 Score=20.79 Aligned_cols=70 Identities=10% Similarity=0.001 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCC----------------------CCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPID----------------------GLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~----------------------gL~ 121 (133)
+...|+|....-+.....+..-.+.....++.+-.-...-+.+++.+.+.++.+. +.-
T Consensus 36 ~l~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 115 (143)
T 4FO5_A 36 LLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGF 115 (143)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEeCCCCHHHHHHHHHHcCCCcceeecCCCCccchHHHhcCCCCCc
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.++++|++|+|+
T Consensus 116 ~~~~id~~g~v~ 127 (143)
T 4FO5_A 116 KNFLINDEGVII 127 (143)
T ss_dssp CEEEECTTSBEE
T ss_pred eEEEECCCCcEE
No 60
>5UM7_B Thioredoxin signature protein; THIOREDOXIN-LIKE DOMAIN, ALPHA-BETA PROTEIN, OXIDOREDUCTASE, structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, National; 1.62A {Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)} SCOP: c.47.1.0
Probab=54.46 E-value=92 Score=21.61 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHH-------------------HhCCCCCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQF-------------------SDWPIDGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l-------------------~~~Pi~gL~Evi 124 (133)
.|....|........+..+.++. ..+..-+.++..+...+..+..+.+ ..+.+.+.-.++
T Consensus 81 f~~~~c~~c~~~~~~l~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 159 (187)
T 5UM7_B 81 EWASWCPDCQKQLPEIQKVYEKY-KGKIHFVMLDMLDSKRETKERADQYISEKDYTFPYYYDTDERAADILHVQSIPTIY 159 (187)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHH-SSSSCEEEEEEECSSSCCHHHHHHHHHHHTCCSCEEEEGGGHHHHHTTCCSTTCEE
T ss_pred EeccCCHHHHHHHHHHHHHHHHc-cCCceEEEEEeCCChHhhHHHHHHHHHHcCCcceEEECCchHHHHHcCCCCCCEEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++|++|+|+
T Consensus 160 lid~~g~v~ 168 (187)
T 5UM7_B 160 LVDKNQKVK 168 (187)
T ss_dssp EECTTSBEE
T ss_pred EECCCCeEE
No 61
>3HCZ_A Possible thiol-disulfide isomerase; APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: SO4; 1.88A {Cytophaga hutchinsonii} SCOP: c.47.1.0, l.1.1.1
Probab=53.83 E-value=42 Score=22.18 Aligned_cols=70 Identities=9% Similarity=-0.045 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHh------------------CCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSD------------------WPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~------------------~Pi~gL~Eviv 125 (133)
.|....|.....-..+..+.++.....-.-+.++.+++.-...+..+.+.- +.+.++-.+++
T Consensus 38 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l 117 (148)
T 3HCZ_A 38 FWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYV 117 (148)
T ss_dssp EECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEE
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhhcCCcEEEEEEecCCHHHHHHHHHhcCCCCceEeeCCCCCCcceeeeEEeeeCEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
+|++|+|+
T Consensus 118 id~~g~i~ 125 (148)
T 3HCZ_A 118 LDKNKVII 125 (148)
T ss_dssp ECTTCBEE
T ss_pred ECCCCeEE
No 62
>4L1C_B Probable septum site-determining protein MinC; Swapping, antiparallel beta sheet, cell division inhibitor, FtsZ, PROTEIN BINDING; 2.28A {Escherichia coli}
Probab=53.64 E-value=1.2e+02 Score=21.24 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCCCeeECCEEEe--eeCCCCCCHhHHHHHHHHHhhcCC----CCeEEEECCC--CCCCHHHHHHHHHhCCC
Q FD01543135_043 54 KNPDFKINGEVFD--NIAPTTSNVRNIYDRVNQKVLSGQ----TNSVVINMAD--TSVSIDELKQQFSDWPI 117 (133)
Q Consensus 54 knPDy~IeG~~fD--cYaP~t~~~r~I~~~i~~KV~~~Q----a~RiVlNL~d--s~~~~~~l~~~l~~~Pi 117 (133)
.+....|.|.-+. .+-..+.+...+.+.+.+|+.+.. ...|+|++.+ +...+..|.+.++++.+
T Consensus 4 ~~~~v~iKg~~~~l~~~~~~~~~~~~l~~~L~~~l~~~~~ff~~~~vvld~~~~~~~~~~~~l~~~l~~~gl 75 (103)
T 4L1C_B 4 GSTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLKHAPVVLNVSALEDPVNWSAMHKAVSATGL 75 (103)
T ss_dssp --CCEEEEEEEEEEEEEEECSCCHHHHHHHHHHHHHHSHHHHTTCEEEEECTTCCSCCCHHHHHHHHHTTTC
T ss_pred CCCCeEeecceEEEEEEEecCCCHHHHHHHHHHHHHcCHHHHcCCCEEEEhHhcCCcCCHHHHHHHHHHcCc
No 63
>7F8M_D Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 2.14A {Candidatus Thorarchaeota archaeon SMTZ1-45}
Probab=53.28 E-value=34 Score=22.75 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+.++.+.|.+ ++|+.-+.++|.+|.++
T Consensus 8 l~~~l~~l~~--~~gv~~~~~~~~~G~~i 34 (120)
T 7F8M_D 8 INKTIRDFET--VPGVEGAALVSADGLMI 34 (120)
T ss_dssp HHHHHHSGGG--STTEEEEEEEETTSCEE
T ss_pred HHHHHHHHhc--CCCeeEEEEEcCCCeEE
No 64
>PF14595.10 ; Thioredoxin_9 ; Thioredoxin
Probab=52.53 E-value=1.1e+02 Score=20.55 Aligned_cols=68 Identities=9% Similarity=-0.063 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+...|+|....-+.+...+..-...... +.+-+-+...+.......+.++-+.++-.+++++.+|+++
T Consensus 44 ~v~f~~~~c~~c~~~~~~l~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 111 (139)
T C1A9N6_GEMAT/8 44 LMIIAIDSCGDSMNSVPYVAKLASQVPG--LELRIVLPTAGKAVQERFRSLDGRATTPTFILLDETGHDR 111 (139)
T ss_pred EEEEECCCchHHHHhHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHhcCCCCCCCEEEEEcCCCCee
No 65
>4HQZ_A Thioredoxin family protein; lipoprotein, Disulfide Bridge, Thiorredoxin, membrane, OXIDOREDUCTASE; HET: HED; 1.22A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=52.00 E-value=60 Score=23.30 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC-----------------------CCCCCCHHHHHHHHHhCCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM-----------------------ADTSVSIDELKQQFSDWPIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL-----------------------~ds~~~~~~l~~~l~~~Pi~gL 120 (133)
++..|++....-......+.+-....+....++-+ ....+-.+........+.+.++
T Consensus 75 li~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (187)
T 4HQZ_A 75 YLKFWASWCGPCKKSMPELMELAAKPDRDFEILTVIAPGIQGEKTVEQFPQWFQEQGYKDIPVLYDTKATTFQAYQIRSI 154 (187)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHCSCCSEEEEEEECTTSTTCCCTTTHHHHHHHTTCCSCCEEECTTSHHHHHTTCCSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhCCccCceEEEEEecCCCCcccHHhHHHHHHHcCCCCCcEEEcCCchhhHhhcccCC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 155 P~~~lid~~g~v~ 167 (187)
T 4HQZ_A 155 PTEYLIDSQGKIG 167 (187)
T ss_dssp SEEEEECTTSBEE
T ss_pred CeEEEECCCCeEE
No 66
>3FK8_A Disulphide isomerase; APC61824.1, disulphide isomerase, Xylella fastidiosa Temecula1, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: FMT; 1.3A {Xylella fastidiosa}
Probab=51.46 E-value=1e+02 Score=20.25 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEeeeCCCCCCHhHHHHHHH--HHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCC---CCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVN--QKVLSGQTNSVVINMADTSVSIDELKQQFSDWPI---DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~--~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi---~gL~EvivI~k~G~ii 133 (133)
++..|++....-+.....+. ......+..-+++.++-.. .+........+.+ .+.-.+++++++|+++
T Consensus 33 ~v~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~ 105 (133)
T 3FK8_A 33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGN--FDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR 105 (133)
T ss_dssp EEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTT--TTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcchhhHHHHhhceEEEeccCC--hhhchHHHHHhCCcccCCCCEEEEECCCCCEE
No 67
>PF08002.15 ; DUF1697 ; Protein of unknown function (DUF1697)
Probab=51.34 E-value=42 Score=24.86 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EECCC-CCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 96 INMAD-TSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 96 lNL~d-s~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+|+.+ +.+.+++|++.|.+. |+..|-.+=..|+||
T Consensus 11 iNvgg~~~~~m~~L~~~~~~~---G~~~v~t~l~SGNvv 46 (137)
T Q7UU99_RHOBA/3 11 INVGGKNKLPMATLRSTLESI---GCQSVLTYIQSGNVV 46 (137)
T ss_pred cccCCCCCcCHHHHHHHHHHC---CCCCcEEEcccCcEE
No 68
>PF16924.9 ; DpaA_N ; Dipicolinate synthase subunit A N-terminal domain
Probab=51.08 E-value=33 Score=24.45 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHHHHHHCCCceE
Q FD01543135_043 28 WRENESAIILSQRGYNVE 45 (133)
Q Consensus 28 ~RENEsA~~LA~~GYdVe 45 (133)
+|+...|+.|++.||+|.
T Consensus 9 ~R~~~la~~L~~~g~~V~ 26 (110)
T G8U0S7_SULAD/4 9 ARDVWLCRILLDKGYTVN 26 (110)
T ss_pred HHHHHHHHHHHHCCCEEE
No 69
>2H30_A Peptide methionine sulfoxide reductase msrA/msrB; reduced, methionine sulfoxide, thiol-disulfide exchange, OXIDOREDUCTASE; HET: MSE; 1.6A {Neisseria gonorrhoeae} SCOP: c.47.1.10
Probab=50.89 E-value=56 Score=22.11 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCC-CCeEEEECC-----------------------CCCCCHHHHHHHHHhCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQ-TNSVVINMA-----------------------DTSVSIDELKQQFSDWPIDG 119 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Q-a~RiVlNL~-----------------------ds~~~~~~l~~~l~~~Pi~g 119 (133)
++..|++....-......+.+-....+ ..-.++-+. .+++-.+.-......+.+.+
T Consensus 42 vi~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (164)
T 2H30_A 42 LIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISV 121 (164)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHTTCCS
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCcccccccchHHHHHHhcCCCCCCCEEeCCCChhhHhcCCcc
Q ss_pred CceEEEEcCCCCcC
Q FD01543135_043 120 LDKIIAIDKMGEPV 133 (133)
Q Consensus 120 L~EvivI~k~G~ii 133 (133)
+-.+++||++|+|+
T Consensus 122 ~P~~~lid~~g~i~ 135 (164)
T 2H30_A 122 YPSWALIGKDGDVQ 135 (164)
T ss_dssp SSEEEEECTTSCEE
T ss_pred cCEEEEEcCCCcEE
No 70
>7YH1_B Roadblock/LC7 domain protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; HET: ZN; 2.69A {Candidatus Prometheoarchaeum syntrophicum}
Probab=50.85 E-value=40 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+.++.+.|. .++|+..+.++|++|.++
T Consensus 7 l~~~l~~l~--~~~gv~~~~l~~~~G~~i 33 (117)
T 7YH1_B 7 FQEILISLK--KIKGIHGSAIIERYGGII 33 (117)
T ss_dssp HHHHHHHHH--TSTTEEEEEEEESSSCEE
T ss_pred HHHHHHHHh--cCCCeeEEEEEecCCeEE
No 71
>PF13905.10 ; Thioredoxin_8 ; Thioredoxin-like
Probab=50.75 E-value=88 Score=19.08 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCC-CCeEEEECCCCCCCH-HHHHHHHHhC----------------------CCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQ-TNSVVINMADTSVSI-DELKQQFSDW----------------------PIDG 119 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Q-a~RiVlNL~ds~~~~-~~l~~~l~~~----------------------Pi~g 119 (133)
++..++|....-......+.+-....+ ...+.+-.-...-+. +++...+..+ .+.+
T Consensus 5 ~v~f~~~~c~~c~~~~~~l~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (97)
T NHLC2_CHICK/73 5 VLDFFTYCCINCLHLLPDLHELEHQYSDKDGLVIIGVHSAKFPNEKVLDSIKSAVLRYNIVHPVVNDADATLWHELEVSC 84 (97)
T ss_pred EEEcccCCChhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCChhHHHHHHhhcccccceecEEeCCCchHHHhcCCCc
Q ss_pred CceEEEEcCCCCc
Q FD01543135_043 120 LDKIIAIDKMGEP 132 (133)
Q Consensus 120 L~EvivI~k~G~i 132 (133)
.-.++++|++|+|
T Consensus 85 ~P~~~l~d~~g~i 97 (97)
T NHLC2_CHICK/73 85 WPTLVILGPRGNM 97 (97)
T ss_pred cCEEEEECCCCCC
No 72
>2HIY_B Hypothetical protein; Streptococcus pneumoniae, COG3797, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN; HET: MSE, GOL; 1.4A {Streptococcus pneumoniae} SCOP: d.356.1.1, l.1.1.1
Probab=50.70 E-value=40 Score=26.44 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EECCC-CCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 96 INMAD-TSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 96 lNL~d-s~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
||+.+ +.+.+++|++.|.+. |+..|..+=..|+||
T Consensus 14 INvGg~~~v~m~~L~~~~~~~---G~~~v~T~l~SGNvv 49 (183)
T 2HIY_B 14 INVGGKNKVVMAELRQELTNL---GLEKVESYINSGNIF 49 (183)
T ss_dssp CSBTTBCCCCHHHHHHHHHHT---TCEEEEEETTTTEEE
T ss_pred eeCCCCCCcCHHHHHHHHHHC---CCCCcEEEeecCeEE
No 73
>2WCW_C HJC; TYPE II RESTRICTION ENDONUCLEASE, HYDROLASE, DNA BINDING PROTEIN, HOLLIDAY JUNCTION RESOLVASE; HET: ACT; 1.58A {ARCHAEOGLOBUS FULGIDUS} SCOP: c.52.1.0
Probab=50.66 E-value=1.4e+02 Score=21.46 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCceEeCCCCCC--CCCCCeeECC----EEEeeeCCCC---CCHhHHHHHHHHHhhcC
Q FD01543135_043 19 STEDNKRAIWRENESAIILSQRGYNVEQNPSVPG--IKNPDFKING----EVFDNIAPTT---SNVRNIYDRVNQKVLSG 89 (133)
Q Consensus 19 ~~~~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~--~knPDy~IeG----~~fDcYaP~t---~~~r~I~~~i~~KV~~~ 89 (133)
+......+-.-|.+.+..|.++||.+...+.... ...||+...- -.+.|=+... .-...=+..+.+.....
T Consensus 1 ~~~~~~~g~~~E~~~~~~L~~~G~~~~~~~~~~~~~~~~~Dii~~~~~~~~~iEvK~~~~~~~~~~~~~~~~l~~~~~~~ 80 (139)
T 2WCW_C 1 GTMGKSKGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAGNGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGF 80 (139)
T ss_dssp -------CHHHHHHHHHHHHHTTCEEEEBCCCSCCSSCCCSEEEECSSCEEEEEEEECSSSCEEECHHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCEEEEcCCcEEEEEEEecCCCCeecCHHHHHHHHHHHHHc
Q ss_pred CCCeEEE
Q FD01543135_043 90 QTNSVVI 96 (133)
Q Consensus 90 Qa~RiVl 96 (133)
.+.-+++
T Consensus 81 ~~~~~l~ 87 (139)
T 2WCW_C 81 GAEAYVA 87 (139)
T ss_dssp TCEEEEE
T ss_pred CCeEEEE
No 74
>4HQS_A Thioredoxin family protein; lipoprotein, Disulfide Bridge, Thiorredoxin, membrane, OXIDOREDUCTASE; HET: GOL; 1.48A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=50.39 E-value=45 Score=24.12 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECC-----------------------CCCCCHHHHHHHHHhCCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMA-----------------------DTSVSIDELKQQFSDWPIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~-----------------------ds~~~~~~l~~~l~~~Pi~gL 120 (133)
+...|++....-......+.+-..+.....+++-+- ...+-.+.-......+.+.++
T Consensus 78 lv~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T 4HQS_A 78 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSY 157 (190)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHTCTTSEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSS
T ss_pred EEEEEcCCCHHHHHhchhHHHHHHHHCCCcEEEEEEcCCCCCcccHHHHHHHhcCCCccCCceeeCCCChHHHHcCCCcC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 158 P~~~lid~~g~i~ 170 (190)
T 4HQS_A 158 PTQAFIDKEGKLV 170 (190)
T ss_dssp SEEEEECTTSCEE
T ss_pred CeEEEECCCCcEE
No 75
>3LEQ_A uncharacterized protein cvnB5; PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, structure genomics, unknown function; HET: MSE; 1.85A {Streptomyces avermitilis}
Probab=50.17 E-value=38 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CHHHHHHHHHhC--CCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDW--PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~--Pi~gL~EvivI~k~G~ii 133 (133)
+...|.+.|++. -++|+..+.++|.+|.++
T Consensus 1 ~~~~l~~~l~~l~~~~~gv~~~~l~~~~G~~i 32 (126)
T 3LEQ_A 1 THSQLDQLLTGLVDRVAEVDHAVVLSEDGLVV 32 (126)
T ss_dssp -CCHHHHHHHHHHHHCTTEEEEEEEETTSCEE
T ss_pred ChhHHHHHHHHHHHhCCCeeEEEEEcCCCcee
No 76
>PF02743.22 ; dCache_1 ; Cache domain
Probab=49.88 E-value=48 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred CCHHHHHHHH--HhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQF--SDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l--~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...| .......-..+.++|++|.++
T Consensus 148 i~~~~l~~~l~~~~~~~~~~~~~~l~d~~g~ii 180 (243)
T Q602G4_METCA/3 148 FDLWQIFRLFDQAEHSVSGNRYVALIDQEGRLV 180 (243)
T ss_pred ecHHHHHHHHhhcccCCCCCceEEEEcCCCCEe
No 77
>2V1M_A GLUTATHIONE PEROXIDASE; SELENIUM, SELENOCYSTEINE, OXIDOREDUCTASE, LIPID PEROXIDASE, SCHISTOSOMA DETOXIFICATION PATHWAY; HET: SO4; 1.0A {SCHISTOSOMA MANSONI} SCOP: c.47.1.0
Probab=49.50 E-value=1.2e+02 Score=20.20 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHH-HhC-----------------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQF-SDW----------------------- 115 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l-~~~----------------------- 115 (133)
.|....|.....-..+..+.++.......-+.+..+. ...+...+...+ ..+
T Consensus 38 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (169)
T 2V1M_A 38 NVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKF 117 (169)
T ss_dssp EECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHH
T ss_pred ceeccCCCCcccHHHHHHHHHHHcCCCeEEEEEeccccCCCCcccHHHHHHHHHHhhcCCccchhccccCCCchhHHHHH
Q ss_pred -----------CCCCCceEEEEcCCCCcC
Q FD01543135_043 116 -----------PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 116 -----------Pi~gL~EvivI~k~G~ii 133 (133)
.+.++-.+++||++|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 146 (169)
T 2V1M_A 118 LKSRQHGTLTNNIKWNFSKFLVDRQGQPV 146 (169)
T ss_dssp HHHHSCCSSSCSCCSTTCEEEECTTSCEE
T ss_pred HHHhcCCccccccccccEEEEECCCCCEe
No 78
>3FOV_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION; 1.88A {Rhodopseudomonas palustris}
Probab=49.45 E-value=96 Score=22.75 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeE
Q FD01543135_043 22 DNKRAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKI 60 (133)
Q Consensus 22 ~~~r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~I 60 (133)
....+..-|..++..|.++||.|...+...+...+|+..
T Consensus 19 ~~~~g~~~E~~a~~~l~~~G~~v~~~~~~~~~~eiDiia 57 (134)
T 3FOV_A 19 AFRTGLSAEASAADYLERQGYRILARRFKTRCGEIDLVA 57 (134)
T ss_dssp ------CHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEecccCCCccceEEE
No 79
>PF02630.18 ; SCO1-SenC ; SCO1/SenC
Probab=49.43 E-value=1.1e+02 Score=19.68 Aligned_cols=69 Identities=6% Similarity=-0.002 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhcC--CCCeEEEECCCCCCCHHHHHHHHH---------------------------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLSG--QTNSVVINMADTSVSIDELKQQFS--------------------------- 113 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~~--Qa~RiVlNL~ds~~~~~~l~~~l~--------------------------- 113 (133)
.|....+. ....-.....+..+.... +..-|.+.++...-+.+.+...+.
T Consensus 28 ~~~~~c~~~~~~~~~~l~~~~~~~~~~g~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (136)
T J9A3P8_9PROT/4 28 FGFTYCPDVCPLQLEVLSRALTIAKIPTNRLVPLFITLDPDRDTPADMAVYTDNFHESIIGLTGDLQQIQQAAKAYKVFF 107 (136)
T ss_pred EEcCCCccccHhHHHHHHHHHHHhcCCCCceEEEEEEeCCCCCCHHHHHHHHHhcccccccccCCHHHHHHHHHHcCCcE
Q ss_pred ----------hCCCCCCceEEEEcCCCCc
Q FD01543135_043 114 ----------DWPIDGLDKIIAIDKMGEP 132 (133)
Q Consensus 114 ----------~~Pi~gL~EvivI~k~G~i 132 (133)
.+.+.++-.+++||++|+|
T Consensus 108 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i 136 (136)
T J9A3P8_9PROT/4 108 QKVDDPETTGGYTVDHSSIVFLMGPDNSY 136 (136)
T ss_pred EEeCCCCCCCCcccccccEEEEECCCCCC
No 80
>4K1F_B Tryparedoxin peroxidase; Thioredoxin fold, PEROXIDASE, OXIDOREDUCTASE; HET: PEG, PE8, PGE; 2.34A {Leishmania major} SCOP: c.47.1.10
Probab=49.21 E-value=89 Score=22.46 Aligned_cols=70 Identities=9% Similarity=0.027 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHH-------HhCCC------------------
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQF-------SDWPI------------------ 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l-------~~~Pi------------------ 117 (133)
.| ....+.....-..+..+.++.......-|.+..+........+.... ..+|+
T Consensus 43 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 122 (199)
T 4K1F_B 43 FYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEES 122 (199)
T ss_dssp ECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETT
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHHHhhhhhCCCCccCceeEecChhHHHHHhCceecc
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.+.-.+++||++|+|+
T Consensus 123 ~~~~~p~~~lid~~g~v~ 140 (199)
T 4K1F_B 123 QGVAYRGLFIIDPHGMLR 140 (199)
T ss_dssp TTEECEEEEEECTTSBEE
T ss_pred CCcccceEEEECCCCcEE
No 81
>6O8H_A UvrABC system protein B; DNA repair, Nucleotide excision repair, DNA BINDING PROTEIN-DNA complex; HET: SO4; 2.39A {Bacillus caldotenax}
Probab=48.75 E-value=52 Score=29.87 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCC-CCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPT-TSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~-t~~~ 75 (133)
++=++.|...||.-+..-..+ -+|.+-|-++|.|+|. ...|
T Consensus 170 ~~l~~~L~~~GY~r~~~V~~~----Gefs~RG~IiDifp~~~~~~P 211 (593)
T 6O8H_A 170 NALLRRLVDIQYDRNDIDFRR----GTFRVRGDVVEIFPASRDEHS 211 (593)
T ss_dssp HHHHHHHHHTTCEECSSCCCT----TEEEEETTEEEECCTTCSSEE
T ss_pred HHHHHHHHHcCCeeccccccC----ceeEEeCCEEEEecCCcCCCc
No 82
>6DNL_A Thiol:disulfide interchange protein DsbD; disulphide reductase, Dsb proteins, OXIDOREDUCTASE; HET: ACT; 1.7A {Neisseria meningitidis}
Probab=48.02 E-value=86 Score=19.42 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCe-EEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNS-VVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~R-iVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++..|++....-......+..-....+... +.+-.-+.....+........+.+.+.-.+++++++|+++
T Consensus 25 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~ 95 (115)
T 6DNL_A 25 VLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANKPEHQALLKEYGLFGPPGVFVVRSDGSRS 95 (115)
T ss_dssp EEEEECTTCHHHHHHHHHTTTCHHHHHHHTGGGEEEEECTTCCHHHHHHHHHHTCSSSCCEEEECTTSCBC
T ss_pred EEEEECCCCHHHHHHHHHhhcChHHHHHHccceeeEEeecCCCHHHHHHHHHhCCCCCCEEEEECCCCCeE
No 83
>3NRN_A uncharacterized protein PF1083; alpha-beta protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, unknown function; HET: AMP, MSE; 2.1A {Pyrococcus furiosus}
Probab=47.11 E-value=67 Score=27.00 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHCCCceE--eCCCCCCCCCCCeeECCEEEee
Q FD01543135_043 33 SAIILSQRGYNVE--QNPSVPGIKNPDFKINGEVFDN 67 (133)
Q Consensus 33 sA~~LA~~GYdVe--QnP~~~~~knPDy~IeG~~fDc 67 (133)
||..|+++||+|. ..-...|+.-..+...|..||.
T Consensus 15 aA~~L~~~G~~V~v~E~~~~~GG~~~~~~~~g~~~d~ 51 (421)
T 3NRN_A 15 AGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLST 51 (421)
T ss_dssp HHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEES
T ss_pred HHHHHHHCCCeEEEEeCCCCCCcccceeeeCCEEEec
No 84
>1I8T_A UDP-GALACTOPYRANOSE MUTASE; Rossmann Fold, FAD, UDP-galactopyranose, mutase, contractase, ISOMERASE; HET: FAD; 2.4A {Escherichia coli} SCOP: c.4.1.3, d.16.1.7
Probab=46.97 E-value=1.2e+02 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHCCCceE--eCCCCCCCCCCCeeECCEEEeeeCCCC--CCHhHHHHHHHH
Q FD01543135_043 33 SAIILSQRGYNVE--QNPSVPGIKNPDFKINGEVFDNIAPTT--SNVRNIYDRVNQ 84 (133)
Q Consensus 33 sA~~LA~~GYdVe--QnP~~~~~knPDy~IeG~~fDcYaP~t--~~~r~I~~~i~~ 84 (133)
||..|+++|++|. .--...|+.--.+...|-.+|-|.|.. ++-..++..+.+
T Consensus 16 aA~~L~~~G~~v~vlE~~~~~GG~~~t~~~~g~~~~d~G~h~~~~~~~~v~~~~~~ 71 (367)
T 1I8T_A 16 CANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVND 71 (367)
T ss_dssp HHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHT
T ss_pred HHHHHHHCCCcEEEEccCCCCCCcceEEeeCCeEEEcCCcceecCCCHHHHHHHHH
No 85
>2P31_A Glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, Structural Genomics, Structural Genomics Consortium, SGC, OXIDOREDUCTASE; 2.0A {Homo sapiens} SCOP: c.47.1.0
Probab=46.44 E-value=1.3e+02 Score=21.24 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECC-------CCCCCHHHHHHHHHhCCCCCCce--------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMA-------DTSVSIDELKQQFSDWPIDGLDK-------------- 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~-------ds~~~~~~l~~~l~~~Pi~gL~E-------------- 122 (133)
.|.-..|.....-..+..+.++.......-+.+..+ ++.-.+.+..+.....+.+-+..
T Consensus 56 f~~~~c~~c~~~~~~l~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (181)
T 2P31_A 56 NVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKY 135 (181)
T ss_dssp EECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCcCCeEEEEEEcccccCCCCCChHHHHHHHHHhcCCCCceeeeeeecCCCcchhHhh
Q ss_pred --------------EEEEcCCCCcC
Q FD01543135_043 123 --------------IIAIDKMGEPV 133 (133)
Q Consensus 123 --------------vivI~k~G~ii 133 (133)
+++||++|+|+
T Consensus 136 ~~~~~~~~~~~~p~~~lid~~G~i~ 160 (181)
T 2P31_A 136 LAQTSGKEPTWNFWKYLVAPDGKVV 160 (181)
T ss_dssp HHHHHSCCCCSTTCEEEECTTSCEE
T ss_pred hhhcCCCCCceeeEEEEECCCCCEE
No 86
>3HQG_A Type-2 restriction enzyme EcoRII; restriction endonuclease, EcoRII, nucleotide flipping, protein-DNA complex, DNA recognition, Endonuclease, Hydrolase, Magnesium, Nuclease, Restriction system, HYDROLASE-DNA; 2.6A {Escherichia coli}
Probab=46.34 E-value=2.8e+02 Score=23.64 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHHHHHHHHHHHHHHCCCc-eEeCCCCCCCCCCCeeECCE---------EEeeeCCCC-CCHhHHHHHHHHHhhcCCCC
Q FD01543135_043 24 KRAIWRENESAIILSQRGYN-VEQNPSVPGIKNPDFKINGE---------VFDNIAPTT-SNVRNIYDRVNQKVLSGQTN 92 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYd-VeQnP~~~~~knPDy~IeG~---------~fDcYaP~t-~~~r~I~~~i~~KV~~~Qa~ 92 (133)
+.+..-|+.-+.+|...|+. .+..+...+++.|||.|-+. .=.|..=+. ++.|.=|..+-....+. .
T Consensus 83 RaG~s~E~~l~~il~~~gi~~~~~q~~~~~~~~~Dfv~P~~~~y~~~~~p~~~~~~ls~KtTlRERwrQ~~~Ea~~~--~ 160 (222)
T 3HQG_A 83 RAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKI--H 160 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBSSCCSSSSCCCSEEESCHHHHHCTTSCGGGCEEEEEESCCGGGGGGGGGGCTTC--S
T ss_pred cccHHHHHHHHHHHHHcCccccccccccCCCcccCEEecChhhccCCCCchhceEEEEEecchHHhHHHHHHHhccC--C
Q ss_pred eEEEECCCCCCCHHHHHHH
Q FD01543135_043 93 SVVINMADTSVSIDELKQQ 111 (133)
Q Consensus 93 RiVlNL~ds~~~~~~l~~~ 111 (133)
++.|---|..+|...+.+.
T Consensus 161 ~~yLiTld~~is~~~~~~m 179 (222)
T 3HQG_A 161 QVHLFTLQEGVSLAQYREM 179 (222)
T ss_dssp SEEEEECCSCCCHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
No 87
>7MIZ_e PDI family protein; cortical, parasite, STRUCTURAL PROTEIN; HET: GDP, GTP, MG; 3.4A {Toxoplasma gondii}
Probab=45.80 E-value=1.9e+02 Score=21.43 Aligned_cols=70 Identities=6% Similarity=0.110 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCC-------CCeEEEECCCCCCCHHHHHH----------------HHHhCCC---
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQ-------TNSVVINMADTSVSIDELKQ----------------QFSDWPI--- 117 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Q-------a~RiVlNL~ds~~~~~~l~~----------------~l~~~Pi--- 117 (133)
++..|++....-......+.+-..... -.-|.+.++++.-....... ....+.+
T Consensus 74 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
T 7MIZ_e 74 ALYFADGADPKCASLLPFLLNYYRTMNEGGANQKIEIIFVSLDRDREAFESHRAHMPWLSIDLENPLTEILKRHFRVMKE 153 (220)
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHhhCCccCCeEEEEEECCCChHHHHHHHhcCCceeccCCchHHHHHHHHcCCccc
Q ss_pred -----------CCCceEEEEcCCCCcC
Q FD01543135_043 118 -----------DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 -----------~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 154 ~~~~~~~~~~~~~~p~~~lid~~g~i~ 180 (220)
T 7MIZ_e 154 YEVPTYGYGSRTGVPSVIVIGSDGREA 180 (220)
T ss_pred ccCCCCCCCcccccCEEEEECCCCCEE
No 88
>3CPT_A Mitogen-activated protein kinase kinase 1-interacting protein 1; scaffold, complex, alpha/beta, Endosome, Membrane, Lysosome, PROTEIN BINDING; 1.9A {Homo sapiens} SCOP: d.110.7.1
Probab=45.76 E-value=46 Score=25.27 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CCCCHHHHHHHHHhC--CCCCCceEEEEcCCCCcC
Q FD01543135_043 101 TSVSIDELKQQFSDW--PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 101 s~~~~~~l~~~l~~~--Pi~gL~EvivI~k~G~ii 133 (133)
+......+...|.+. -++|+..++++|+||.+|
T Consensus 17 ~~~~~~~l~~~L~~l~~~v~gv~~v~i~~~DG~~I 51 (143)
T 3CPT_A 17 FQGSADDLKRFLYKKLPSVEGLHAIVVSDRDGVPV 51 (143)
T ss_dssp -----CHHHHHHHHHGGGSTTEEEEEEECTTSCEE
T ss_pred cccCHHHHHHHHHHHhhhCCCEEEEEEECCCCcEE
No 89
>2CVB_A probable thiol-disulfide isomerase/thioredoxin; Thioredoxin, Redox protein, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION; HET: MSE; 1.8A {Thermus thermophilus} SCOP: c.47.1.10
Probab=45.53 E-value=66 Score=23.05 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----------------------CCCCHHHHHHHHHhCCCCCCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----------------------TSVSIDELKQQFSDWPIDGLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----------------------s~~~~~~l~~~l~~~Pi~gL~ 121 (133)
.|+...+........+..+..+.... ..-+.++.++ +++-.+.-......+.+.++-
T Consensus 40 f~~~~c~~c~~~~~~l~~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 118 (188)
T 2CVB_A 40 FMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTP 118 (188)
T ss_dssp EECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEES
T ss_pred EEcCCChhHhhhHHHHHHHHHHhcCc-eEEEEEeCCcccCCccCCHHHHHHHHHHhCCceeEEeCccHHHHHHhcCccCC
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 119 ~~~lid~~g~i~ 130 (188)
T 2CVB_A 119 EVFLFDERRLLR 130 (188)
T ss_dssp EEEEECTTCBEE
T ss_pred EEEEECCCCeEE
No 90
>7EGT_A UvrABC system protein B; TCR, Thermus thermophilus, RNA polymerase, UvrD, UvrB, DNA repair, TRANSCRIPTION; 2.581A {Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)}
Probab=45.40 E-value=71 Score=28.41 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~ 75 (133)
.+-++.|.+.||.-...-. ..-.|.+-|.++|+|.|....+
T Consensus 170 ~~l~~~L~~~GY~~~~~v~----~~G~fs~rG~i~di~~~~~~~p 210 (411)
T 7EGT_A 170 EVLLERLLELGYQRNDIDL----SPGRFRAKGEVLEIFPAYETEP 210 (411)
T ss_dssp HHHHHHHHHTTCEECSSCC----CTTEEEEETTEEEEECTTCSSC
T ss_pred HHHHHHHHHcCCeeCCCCC----CCceEEEcCCEEEEecCCCCCC
No 91
>2L5O_A Putative thioredoxin; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; NMR {Neisseria meningitidis serogroup B} SCOP: c.47.1.0, l.1.1.1
Probab=45.23 E-value=75 Score=21.28 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC-------------------CCCCHHHHHHHHHhCCCCCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD-------------------TSVSIDELKQQFSDWPIDGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d-------------------s~~~~~~l~~~l~~~Pi~gL~Evi 124 (133)
++..|++....-......+.+-........+.+-.-. +++-.+.-......+.+.+.-.++
T Consensus 32 lv~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 111 (153)
T 2L5O_A 32 LINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSV 111 (153)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhccCCcEEEEEeCCCCCHHHHHHHHHHhCCCceEEEcCchHHHHHhCCcccCEEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++|++|+|+
T Consensus 112 ~id~~g~i~ 120 (153)
T 2L5O_A 112 LIGKKGEIL 120 (153)
T ss_dssp EECSSSCCC
T ss_pred EECCCCCEE
No 92
>1XVQ_A thiol peroxidase; thioredoxin fold, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, OXIDOREDUCTASE; 1.75A {Mycobacterium tuberculosis} SCOP: l.1.1.1, c.47.1.10
Probab=44.97 E-value=1.7e+02 Score=20.67 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEeeeCCCC-CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCC------------------------
Q FD01543135_043 64 VFDNIAPTT-SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPID------------------------ 118 (133)
Q Consensus 64 ~fDcYaP~t-~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~------------------------ 118 (133)
++..+++.. ..-......+.+...+....-|.++.+ +.+.+.+.+.+.+++
T Consensus 48 vl~f~~~~c~~~c~~~~~~l~~~~~~~~~~~v~v~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 123 (175)
T 1XVQ_A 48 LLNIFPSVDTPVCATSVRTFDERAAASGATVLCVSKD----LPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGP 123 (175)
T ss_dssp EEEECSCCCSSCCCHHHHHHHHHHHHTTCEEEEEESS----CHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSST
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHhhCCCCceeEecCCchHHHHhCcEecCCc
Q ss_pred --CCc--eEEEEcCCCCcC
Q FD01543135_043 119 --GLD--KIIAIDKMGEPV 133 (133)
Q Consensus 119 --gL~--EvivI~k~G~ii 133 (133)
++- .+++||++|+|+
T Consensus 124 ~~~~p~~~~~lid~~g~i~ 142 (175)
T 1XVQ_A 124 MAGLLARAIVVIGADGNVA 142 (175)
T ss_dssp TTTSBCSEEEEECTTSBEE
T ss_pred cccceecEEEEECCCCcEE
No 93
>8GLV_Bc Dynein light chain roadblock LC7b; cilia, microtubule, dynein, MOTOR PROTEIN; HET: GDP, GTP, MG; 3.1A {Chlamydomonas reinhardtii}
Probab=44.93 E-value=56 Score=21.47 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++..+.+.|.+ ++|..-+++++++|.++
T Consensus 3 ~~~~~l~~l~~--~~gv~~~~~~~~dG~~i 30 (100)
T 8GLV_Bc 3 DIESTLTRIQG--HKGVIGVIIVNNQGVPL 30 (100)
T ss_pred hHHHHHHHHHc--CCCEEEEEEECCCCCEE
No 94
>2RAQ_G Conserved protein MTH889; alpha-beta protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; HET: CA, MSE; 3.11A {Methanothermobacter thermautotrophicus} SCOP: d.58.61.1
Probab=44.75 E-value=2.1e+02 Score=21.80 Aligned_cols=62 Identities=15% Similarity=0.385 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHh-----------hcCCCCeEEEECCCCCCCHHHHHHHHHhCC--CCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKV-----------LSGQTNSVVINMADTSVSIDELKQQFSDWP--IDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV-----------~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~P--i~gL~Eviv 125 (133)
++|..-|...+.-.+...+.+-- -...+..+-+.+.+..++.+++++.+.++. +-.++||.+
T Consensus 10 VLDVLKP~~p~i~ela~~L~~~~gv~~V~i~v~EvD~~tetv~itieG~~id~e~i~~~ie~~GasIhSiDeV~~ 84 (97)
T 2RAQ_G 10 VLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVDEVVA 84 (97)
T ss_dssp EEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEECCSSEEEEEEEEEESSCCHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred EEeccCCCCCCHHHHHHHHHhhcCcceEEEEEEEeecCceeEEEEEEeCCCCHHHHHHHHHHcCCeeeeeeEEEE
No 95
>PF05634.15 ; APO_RNA-bind ; APO RNA-binding
Probab=44.24 E-value=40 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHCCCceEeCCCCCCCCCCCeeECCEEEe
Q FD01543135_043 35 IILSQRGYNVEQNPSVPGIKNPDFKINGEVFD 66 (133)
Q Consensus 35 ~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fD 66 (133)
++-.++|-++..-|... ...|=|.|+|+++|
T Consensus 170 ELCiQAGa~~p~ypt~r-r~~pv~~i~~~~~d 200 (200)
T M1C2U3_SOLTU/6 170 ELCIQAGVDLPGYPSRR-RTKPIRMMGKKVID 200 (200)
T ss_pred HHHHhcCCCCCCCCCcc-cCCCeeeecceecC
No 96
>2D7D_A UvrABC system protein B; Helicase, Protein-DNA-ADP ternary complex, HYDROLASE-DNA COMPLEX; HET: ADP; 2.1A {Bacillus subtilis}
Probab=44.03 E-value=65 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCC-CCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPT-TSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~-t~~~ 75 (133)
++=++.|...|| +..+.+. ..-+|-+-|-++|.|.|. ...|
T Consensus 170 ~~l~~~L~~~GY--~r~~~V~--~~Gefs~RG~IiDifp~~~~~~P 211 (661)
T 2D7D_A 170 NELLRKLVDIQY--ARNDIDF--QRGTFRVRGDVVEIFPASRDEHC 211 (661)
T ss_dssp HHHHHHHHHTTC--EECSSSC--CTTEEEEETTEEEEECTTCSSEE
T ss_pred HHHHHHHHHcch--hhccccc--CCCeEEEcCeEEeeecCCCCcce
No 97
>2R37_B Glutathione peroxidase 3; GLUTATHIONE, PEROXIDASE, PLASMA, STRUCTURAL GENOMICS CONSORTIUM, SGC, Oxidoreductase, Secreted, Selenium, Selenocysteine; 1.85A {Homo sapiens} SCOP: c.47.1.0
Probab=43.27 E-value=1.8e+02 Score=22.75 Aligned_cols=69 Identities=6% Similarity=-0.036 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHH--------hCCCCCCc----------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFS--------DWPIDGLD---------- 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~--------~~Pi~gL~---------- 121 (133)
.|....|.. ..-.-+..+.++.......-+.++.+. ...+.+++.+.++ ..+.+-+.
T Consensus 45 f~~~~C~~c-~~~~~l~~~~~~~~~~~v~~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (207)
T 2R37_B 45 NVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQ 123 (207)
T ss_dssp EECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCC
T ss_pred Eeccccccc-hHHHHHHHHHHHHhcCCeEEEEEechhcccCCCCCchhHHHHHhhhCCCCCccCceeeeeeeeeCCcchh
Q ss_pred -------------------------------------eEEEEcCCCCcC
Q FD01543135_043 122 -------------------------------------KIIAIDKMGEPV 133 (133)
Q Consensus 122 -------------------------------------EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~ 172 (207)
T 2R37_B 124 KFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPI 172 (207)
T ss_dssp HHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTSCCSTTCEEEECTTSCEE
T ss_pred HHHHHHHhhCCCcccccCCCcccccCcccccccccceeEEEeCCCCcEE
No 98
>3L7H_C RE64145p; LC7, Km23, Roadblock, Dynein, Light Chain, Hydrolase, PROTEIN TRANSPORT; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1
Probab=43.15 E-value=59 Score=21.22 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++..+.+.|.+ ++|..-+.+++++|.+|
T Consensus 4 ~~~~~l~~l~~--~~gv~~~~~~~~dG~~i 31 (97)
T 3L7H_C 4 EVEETLKRIQS--HKGVVGTIVVNNEGIPV 31 (97)
T ss_dssp -CHHHHHHHHT--STTEEEEEEEETTSCEE
T ss_pred HHHHHHHHHHc--CCCeeEEEEECCCCCEE
No 99
>PF06144.17 ; DNA_pol3_delta ; DNA polymerase III, delta subunit
Probab=43.15 E-value=1.7e+02 Score=21.37 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred eeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCC
Q FD01543135_043 67 NIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 67 cYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~ 129 (133)
.|.|...-.+.+...+.++...+...--+.-++....+.+++...+...|+-+=+.+++| ++
T Consensus 3 l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~vii-~~ 64 (170)
T Q9CF27_LACLA/1 3 IFGESRELVGELKNQLLTEVNFEPTDLSQAYYDLTPSNSDLALEDLESLPFFSDSRLVIL-EN 64 (170)
T ss_pred EccCCHHHHHHHHHHHHHhCCCCCCCcceEEEeCCCCCHHHHHHHHhcCcccCCCeEEEE-ec
No 100
>PF02021.21 ; UPF0102 ; Uncharacterised protein family UPF0102
Probab=43.06 E-value=52 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHHCCCce-EeC
Q FD01543135_043 30 ENESAIILSQRGYNV-EQN 47 (133)
Q Consensus 30 ENEsA~~LA~~GYdV-eQn 47 (133)
|.-++..|.++||.+ +.+
T Consensus 2 E~~~~~~l~~~G~~i~~~~ 20 (91)
T Y2807_DESPS/12 2 EYLACRFLKKQGYVILQKN 20 (91)
T ss_pred HHHHHHHHHHCCCEEEEec
No 101
>3LIF_B Putative diguanylate cyclase (GGDEF) with PAS/PAC domain; PDC fold, SIGNALING PROTEIN; HET: CIT, MPD, MSE; 2.7A {Rhodopseudomonas palustris}
Probab=42.97 E-value=67 Score=22.76 Aligned_cols=31 Identities=6% Similarity=0.153 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+.|.+.|.......-..+.++|.+|.++
T Consensus 149 i~~~~l~~~~~~~~~~~~~~~~l~d~~g~~i 179 (254)
T 3LIF_B 149 IESEYFSTFYKTFDLGPGGSISLLHSDGRLL 179 (254)
T ss_dssp ECHHHHHHHHHTSCCCSSCEEEEEETTSBEE
T ss_pred EeHHHHHHHHHhcCCCCCCeEEEEeCCCCEE
No 102
>3KCM_D Thioredoxin family protein; SGX, thioredoxin protein, PSI, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural; HET: SO4, MSE; 2.45A {Geobacter metallireducens GS-15} SCOP: c.47.1.0
Probab=42.74 E-value=1.6e+02 Score=19.90 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCC-eEEEECCCCCCCHHHHHHHHHh------------------CCCCCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTN-SVVINMADTSVSIDELKQQFSD------------------WPIDGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~-RiVlNL~ds~~~~~~l~~~l~~------------------~Pi~gL~Evi 124 (133)
+...|++....-+.....+..-....... -.++-+.....+.+.+.+.+.+ +.+.++-.++
T Consensus 32 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 111 (154)
T 3KCM_D 32 IVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETF 111 (154)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHTCCCCEEECTTCHHHHHTTCCSSSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCChHHHHHHHHHhCCCCcEEECCCchHHHHhccCCccEEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++|++|+|+
T Consensus 112 lid~~g~i~ 120 (154)
T 3KCM_D 112 VIDRHGVIL 120 (154)
T ss_dssp EECTTSBEE
T ss_pred EECCCCcEE
No 103
>1C4O_A DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB; DNA NUCLEOTIDE EXCISION REPAIR, UVRABC, HELICASE, HYPERTHERMOSTABLE PROTEIN, REPLICATION; HET: SO4, BOG; 1.5A {Thermus thermophilus} SCOP: c.37.1.19
Probab=41.83 E-value=77 Score=29.35 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~ 75 (133)
.+-++.|...||.-+..-. ..-+|.+-|-++|+|.|....|
T Consensus 166 ~~l~~~L~~~GY~r~~~V~----~~Gefs~RG~IiDifp~~~~~P 206 (664)
T 1C4O_A 166 EVLLERLLELGYQRNDIDL----SPGRFRAKGEVLEIFPAYETEP 206 (664)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHcCCccccCCC----CCCeEEEeCCEEEEecCCCCCC
No 104
>3KYE_C Roadblock/LC7 domain, Robl_LC7; alpga-beta-alpha sandwich, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=41.75 E-value=60 Score=23.34 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCHHHHHHHHHhC--CCCCCceEEEEcCCCCcC
Q FD01543135_043 102 SVSIDELKQQFSDW--PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 102 ~~~~~~l~~~l~~~--Pi~gL~EvivI~k~G~ii 133 (133)
......+.+.|.+. -++|+..+.++|++|.++
T Consensus 21 ~~~~~~l~~~l~~l~~~~~gv~~~~i~~~dG~~i 54 (150)
T 3KYE_C 21 GHHVSDLDWLMSGLVQRVPHTTSAVLLSCDGLVK 54 (150)
T ss_dssp ----CCCHHHHHHHHHHSTTEEEEEEEETTSCEE
T ss_pred cCChhHHHHHHHHHHHhCCCeeEEEEEcCCCceE
No 105
>7AJQ_G Biopolymer transport protein ExbD; TonB transport, MEMBRANE PROTEIN, IRON UPTAKE, PROTON TRANSFER, TONB COMPLEX, METAL TRANSPORT, MOTOR PROTEIN;{Serratia marcescens}
Probab=41.73 E-value=2.2e+02 Score=20.95 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred eeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 58 FKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 58 y~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
|.++|+.+ +...+...+.+..++.+..+|+|.-++ .+..+.+.+.+..---.|+..|-+++..+.
T Consensus 74 ~~~~~~~~--------~~~~l~~~l~~~~~~~~~~~v~i~~d~-~~~~~~v~~v~~~~~~~g~~~i~l~~~~~~ 138 (146)
T 7AJQ_G 74 LYVGDQPV--------NADQLTSVLDQRTQANKETTIFFQADK-SVDYETLMSVMDTLRKAGYLKVGLVGMEGA 138 (146)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEECCEEc--------CHHHHHHHHHHHHHhCCCCeEEEEeCC-CCCHHHHHHHHHHHHHCCCeEEEEEecCcc
No 106
>2L57_A Uncharacterized protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural; NMR {Clostridium perfringens}
Probab=41.35 E-value=1.6e+02 Score=19.26 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCC---CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTT---SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t---~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+|+|.. ......+..+.++. .....-+.++.+.+. -......+.+.+.-.++++|++|+++
T Consensus 30 ~v~f~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~P~~~~~~~~g~~~ 96 (126)
T 2L57_A 30 IIMFKTDTCPYCVEMQKELSYVSKER-EGKFNIYYARLEEEK-----NIDLAYKYDANIVPTTVFLDKEGNKF 96 (126)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHS-SSSCEEEEEETTSSH-----HHHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHhHhhhhh-hcceEEEEEEcCccc-----chHHHHhcCCCccCEEEEEcCCCCEE
No 107
>2B2N_B Transcription-repair coupling factor; x-ray crystallography strand-specific repair template strand RNA polymerase RNAP uvrA/B/C repair; HET: P4C; 2.1A {Escherichia coli} SCOP: c.37.1.19, l.1.1.1
Probab=40.79 E-value=89 Score=26.77 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNV 75 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~ 75 (133)
++-+..|.+.||.....-. ..-.|.+.|.++|+|.+....+
T Consensus 139 ~~l~~~L~~~gy~~~~~v~----~~G~~~~rG~i~di~~~~~~~p 179 (344)
T 2B2N_B 139 DALRTQLDSAGYRHVDQVM----EHGEYATRGALLDLFPMGSELP 179 (344)
T ss_dssp HHHHHHHHHTTCEECSSCC----STTEEEEETTEEEECCTTCSSC
T ss_pred HHHHHHHHHCCCEECcccc----cCCeEEecCCEEEEecCCCCCc
No 108
>7K5B_F Dynein light chain roadblock-type 2 protein; three head, outer dynein arms, microtubule binding, MOTOR PROTEIN; HET: ATP, ADP; 4.5A {Tetrahymena thermophila}
Probab=40.77 E-value=74 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.499 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++..+.+.|.+ ++|..-+++++.+|.+|
T Consensus 1 ~~~~~l~~l~~--~~gV~~~~l~~~dG~~i 28 (128)
T 7K5B_F 1 NADDQLKQLSA--LEGANGYVIFNESGIPL 28 (128)
T ss_dssp CHHHHHHHHHH--STTEEEEEEECSSCCEE
T ss_pred ChHHHHHHHHc--CCCeeEEEEEcCCCCEE
No 109
>2GB7_C R.Ecl18kI; ECL18KI-DNA COMPLEX, TYPE II RESTRICTION ENDONUCLEASE, NUCLEOTIDE FLIPPING, BASE EXTRUSION, hydrolase-DNA COMPLEX; 1.7A {Enterobacter cloacae}
Probab=40.03 E-value=2.7e+02 Score=24.87 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHHHHHHHHHHHHHHCCCceEeCCCCC--------CCCCCCeeECCEEE------eeeCCCC-CCHhHHHHHHHHHhhc
Q FD01543135_043 24 KRAIWRENESAIILSQRGYNVEQNPSVP--------GIKNPDFKINGEVF------DNIAPTT-SNVRNIYDRVNQKVLS 88 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYdVeQnP~~~--------~~knPDy~IeG~~f------DcYaP~t-~~~r~I~~~i~~KV~~ 88 (133)
+.+-.-|+.-+.+|...|+..+..+... .++.||+.|-+... .|..=+. ++.|.=|..+-....+
T Consensus 119 RaG~~fE~~i~~ll~~~gi~~~~q~~~~~~~f~~~~~~~~~Dfv~P~~~~y~~~~~~~~~ls~KtTlRERWrQv~~E~~r 198 (305)
T 2GB7_C 119 RAGKEFESILELLMMGAGIPVDVQGAIGKSFFQKNQIGKLVDLVMPGVVQYTSNKRNTMLISAKTTLRERWQEVPEEVNR 198 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEGGGC--------CCCTTEEEEESCHHHHHHCCTTCEEEEEESCCTTGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCcceeccccccccccccCCCceEeEeccChhhhhcCccceEEEEeeccHHHHHhhchHHHhh
Q ss_pred CCCCeEEEECCCCCCCHHHHHHH
Q FD01543135_043 89 GQTNSVVINMADTSVSIDELKQQ 111 (133)
Q Consensus 89 ~Qa~RiVlNL~ds~~~~~~l~~~ 111 (133)
-....+.|---|..+|...+.+.
T Consensus 199 ~~~~~~yL~Tld~~is~~~i~~m 221 (305)
T 2GB7_C 199 TGIREMYLATLDDSFSEETINIL 221 (305)
T ss_dssp HTCSCEEEEECCSCCCHHHHHHH
T ss_pred hCCcEEEEEEcCCCCCHHHHHHH
No 110
>3ME8_A Putative uncharacterized protein; electron transfer protein, ELECTRON TRANSPORT, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center; 1.5A {Aquifex aeolicus}
Probab=39.94 E-value=2e+02 Score=20.16 Aligned_cols=69 Identities=7% Similarity=0.089 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEeeeCCCCCC-HhHHHHHHHHHhhcCC-----CCeEEEECCCCCCCHHHHHHHHHhCCCC-------------------
Q FD01543135_043 64 VFDNIAPTTSN-VRNIYDRVNQKVLSGQ-----TNSVVINMADTSVSIDELKQQFSDWPID------------------- 118 (133)
Q Consensus 64 ~fDcYaP~t~~-~r~I~~~i~~KV~~~Q-----a~RiVlNL~ds~~~~~~l~~~l~~~Pi~------------------- 118 (133)
++++++..... -......+.+=..+.. ..-|.+..+.. -+.+.+.+...++.+.
T Consensus 32 li~f~~~~c~~~c~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (170)
T 3ME8_A 32 ILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPK-DTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLL 110 (170)
T ss_dssp EEEEECTTCCSHHHHHHHHHHHHHHHHCCBTTTBEEEEEECCTT-CCHHHHHHHHHHHTCCSSSEEEEEESSHHHHHHHH
T ss_pred EEEeecccCCccChHHHHHHHHHHHHHCCCCCCeEEEEEEcCCC-CCHHHHHHHHHHhCCCcCCeEEEecCCHHHHHHHH
Q ss_pred ---CCce------------EEEEcCCCCcC
Q FD01543135_043 119 ---GLDK------------IIAIDKMGEPV 133 (133)
Q Consensus 119 ---gL~E------------vivI~k~G~ii 133 (133)
|+.. +++||++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 140 (170)
T 3ME8_A 111 DAIDFRFMTAGNDFIHPNVVVVLSPELQIK 140 (170)
T ss_dssp HHTTCCCEEETTEEECCCEEEEECTTSBEE
T ss_pred HHcCCcEEeCCCceecCcEEEEECCCCeEE
No 111
>1LU4_A SOLUBLE SECRETED ANTIGEN MPT53; THIOREDOXIN-LIKE FOLD, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, OXIDOREDUCTASE; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=39.65 E-value=1.6e+02 Score=18.93 Aligned_cols=70 Identities=10% Similarity=-0.007 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcC-CCCeEEEECCCCCCCH---------------HHHHHHHHhCCCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSG-QTNSVVINMADTSVSI---------------DELKQQFSDWPIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~-Qa~RiVlNL~ds~~~~---------------~~l~~~l~~~Pi~gL~EvivI~ 127 (133)
+...|++....-......+.+-.... ...-+.+..+++.-.+ +.-......+.+.++-.++++|
T Consensus 28 ~l~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d 107 (136)
T 1LU4_A 28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYR 107 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEEC
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhCCCcEEEEEEcCcchHHHHHHHHhcCCCccEEECCCCccHHhcCCCCCCeEEEEC
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 108 ~~g~i~ 113 (136)
T 1LU4_A 108 ADGTST 113 (136)
T ss_dssp TTSCEE
T ss_pred CCCcEE
No 112
>1NA6_B Restriction endonuclease EcoRII; site-specific restriction mutation REPLICATION, HYDROLASE; 2.1A {Escherichia coli} SCOP: b.142.1.1, c.52.1.22
Probab=39.31 E-value=4.2e+02 Score=24.55 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred HHHHHHHHHHHHHHHHCCCc-eEeCCCCCCCCCCCeeECCE---------EEeeeCCCC-CCHhHHHHHHHHHhhcCCCC
Q FD01543135_043 24 KRAIWRENESAIILSQRGYN-VEQNPSVPGIKNPDFKINGE---------VFDNIAPTT-SNVRNIYDRVNQKVLSGQTN 92 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYd-VeQnP~~~~~knPDy~IeG~---------~fDcYaP~t-~~~r~I~~~i~~KV~~~Qa~ 92 (133)
+.+..-||.-+.+|.+.|+. .+..+...+++.|||.|.+. .=.|..=+. ++.|.=|..+-.-..+ ..
T Consensus 265 RaG~s~E~~i~~il~~~~i~~~~~q~~~~~~~~~Dfi~p~~~~y~~~~~~~~~~~~ls~KtT~reRWrQv~~Ea~~--~~ 342 (404)
T 1NA6_B 265 RAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADK--IH 342 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBSSCCCSTTCCCSCEESCHHHHHCSSSCGGGCEEEEECSSCTTCSGGGTTSCSS--CS
T ss_pred cchHHHHHHHHHHHHHcCCcceeeccccCCCCCCCEEeCCHHHcccCCCChhheEEEEeecchHHHHHHHHhHhhc--CC
Q ss_pred eEEEECCCCCCCHHHHHHH
Q FD01543135_043 93 SVVINMADTSVSIDELKQQ 111 (133)
Q Consensus 93 RiVlNL~ds~~~~~~l~~~ 111 (133)
+..|---|..++...+.++
T Consensus 343 ~~~L~Tl~~~is~~~~~~m 361 (404)
T 1NA6_B 343 QVHLFTLQEGVSLAQYREM 361 (404)
T ss_dssp SEEEECCCSCCCHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
No 113
>7K58_F Dynein light chain roadblock-type 2 protein; outer-arm dynein, axonemal dynein, microtubule doublet, STRUCTURAL PROTEIN; HET: ATP, ADP; 3.5A {Tetrahymena thermophila}
Probab=38.59 E-value=85 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.499 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+++.+.+.|.. ++|..-+++++++|.+|
T Consensus 1 ~~~~~l~~l~~--~~gV~g~~~~~~dG~~I 28 (110)
T 7K58_F 1 NADDQLKQLSA--LEGANGYVIFNESGIPL 28 (110)
T ss_dssp CTTHHHHHHHH--STTCCBCEEECSSSCEE
T ss_pred ChHHHHHHHHc--CCCeeEEEEEcCCCCEE
No 114
>PF00578.25 ; AhpC-TSA ; AhpC/TSA family
Probab=38.46 E-value=1.7e+02 Score=18.87 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCC-CCCCHhHHHHHHHHHhhcCCCCeEEEEC-----------------CCCCCCHH-HHHHHHHhCCCC------
Q FD01543135_043 64 VFDNIAP-TTSNVRNIYDRVNQKVLSGQTNSVVINM-----------------ADTSVSID-ELKQQFSDWPID------ 118 (133)
Q Consensus 64 ~fDcYaP-~t~~~r~I~~~i~~KV~~~Qa~RiVlNL-----------------~ds~~~~~-~l~~~l~~~Pi~------ 118 (133)
++.+|++ ....-+.....+..-....+ +-.++-+ ..+++-.+ .-......+.+.
T Consensus 32 ~~~~~~~~~c~~c~~~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (127)
T Q8EW09_MALP2/1 32 IISCFPSIDTGVCDMQTKKLFSEYGNNE-KIVLLNVSSDSLFAFNKWCLANEAQNTVMLSDYRDHTFAKAYGVNIKDANL 110 (127)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhcCC-CEEEEEEEcCCHHHHHHHHHhccCCCceEeecCChhHHHHHhCCchhhccc
Q ss_pred CCceEEEEcCCCCcC
Q FD01543135_043 119 GLDKIIAIDKMGEPV 133 (133)
Q Consensus 119 gL~EvivI~k~G~ii 133 (133)
++-.++++|++|+|+
T Consensus 111 ~~p~~~lid~~g~i~ 125 (127)
T Q8EW09_MALP2/1 111 IYRSIFIIDEFNFVK 125 (127)
T ss_pred ccCeEEEECCCCcEE
No 115
>5E37_C EF-Hand domain-containing thioredoxin; Calredoxin, calcium-, redox-, Chlamydomonas reinhardtii, OXIDOREDUCTASE; 1.6A {Chlamydomonas reinhardtii}
Probab=38.44 E-value=2.5e+02 Score=22.83 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+...+++....-+.....+.+-....+.. |.+-.-+...+.+.+......+.+.+.-.++++ ++|+++
T Consensus 230 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~P~~~i~-~~g~~~ 297 (356)
T 5E37_C 230 VVFGALTWCRPCKGMQRPVQKLAEHYKDH-IVFVKLFGNANKQTKRIFKERFQIRSTPCFITL-RKGEPV 297 (356)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTSSHHHHHCCCCCSCCCSSSEEEEE-ETTEEE
T ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHhcCC-eEEEEEecCCChhhHHHHHHHhCCCCCCEEEEE-eCCcEE
No 116
>7KIZ_J Peroxiredoxin-2; hydrogen peroxide, OXIDOREDUCTASE; 1.7A {Homo sapiens} SCOP: c.47.1.10
Probab=38.27 E-value=1.2e+02 Score=21.42 Aligned_cols=70 Identities=7% Similarity=0.060 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC---------------------CCCCCCHHHHHHHHHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM---------------------ADTSVSIDELKQQFSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL---------------------~ds~~~~~~l~~~l~~~Pi---- 117 (133)
.| ....+.....-..+..+.++....+..-++++. ..+++-.+.-......+.+
T Consensus 41 ~~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 120 (197)
T 7KIZ_J 41 FYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTD 120 (197)
T ss_dssp ECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETT
T ss_pred EeCCCCCccCHHHHHHHHHcHHHHHHcCCEEEEEECCchhhhHHHHhcccccCCCCCCCcceEEcCchHHHHHhCCeecC
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.+.-.+++||++|+|+
T Consensus 121 ~~~~~p~~~lid~~g~v~ 138 (197)
T 7KIZ_J 121 EGIAYRGLFIIDGKGVLR 138 (197)
T ss_dssp TTEECEEEEEECTTSBEE
T ss_pred CCCcccEEEEEcCCCeEE
No 117
>8P9R_B Biopolymer transport protein ExbD; ton, TonB-binding, ExbB-integrated, periplasmic, MEMBRANE PROTEIN; 1.52A {Escherichia coli}
Probab=38.15 E-value=1.6e+02 Score=18.47 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCCCeeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 53 IKNPDFKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 53 ~knPDy~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
..+..|.|+|+.++ ...+...+...+.......|+|..+.. +....+...+...--.|+..+.+......
T Consensus 10 ~~~g~~~~~~~~~~--------~~~l~~~l~~~~~~~~~~~v~i~~d~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 79 (82)
T 8P9R_B 10 KADNSMFIGNDPVT--------DETMITALNALTEGKKDTTIFFRADKT-VDYETLMKVMDTLHQAGYLKIGLVGEETA 79 (82)
T ss_dssp CTTCCEEETTEEEC--------TTTHHHHHHHHHTTCTTSCEEEEECTT-CBHHHHHHHHHHHHHTTCCCEEECC----
T ss_pred ccCCeEEECCEEeC--------HHHHHHHHHHHhcCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHCCCceeEEecchhh
No 118
>7F8F_A Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 1.83A {Candidatus Odinarchaeota archaeon LCB_4}
Probab=37.97 E-value=90 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.+.++.+.+. .++|...+++++++|.++
T Consensus 6 ~~~~~l~~l~--~~~gv~~~~~~~~~G~~i 33 (94)
T 7F8F_A 6 DIQPILKNLQ--RFEGVRGVIITTTEGLPI 33 (94)
T ss_dssp ---------C--CCTTCSEEEEEETTSCEE
T ss_pred HHHHHHHHHh--cCCCEEEEEEEcCCCCee
No 119
>7CT3_A Mutual gliding motility protein C (MglC); Roadblock/LC7 domain, CYTOSOLIC PROTEIN; HET: MSE; 1.85A {Myxococcus xanthus DK 1622}
Probab=37.72 E-value=92 Score=20.90 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.+++.+.+.|. .-++|+..++++|++|.++
T Consensus 1 ~~l~~~l~~l~-~~~~gv~~~~l~~~~G~~i 30 (120)
T 7CT3_A 1 MSFRTHLESVV-NQVEGALACSVMGFDGISV 30 (120)
T ss_dssp CTTHHHHHHHH-HHSTTEEEEEEEETTSCEE
T ss_pred CCHHHHHHHHH-HcCCCeeEEEEecCCceee
No 120
>5C04_B Putative peroxiredoxin MT2298; OXIDOREDUCTASE, 1-cys peroxiredoxin, peroxiredoxin, thioredoxin fold, Mycobacterium tuberculosis, active site mutant; 1.45A {Mycobacterium tuberculosis}
Probab=37.50 E-value=1.7e+02 Score=19.51 Aligned_cols=70 Identities=6% Similarity=-0.004 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----------------------CCCCHHHHHHHHHhCCCCCC
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----------------------TSVSIDELKQQFSDWPIDGL 120 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----------------------s~~~~~~l~~~l~~~Pi~gL 120 (133)
.| ....+.....-..+..+..+.......-|++..++ ....+..............+
T Consensus 37 f~~~~~~~~c~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (153)
T 5C04_B 37 FHPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIAN 116 (153)
T ss_dssp ECSCTTCHHHHHHHHHHHHTHHHHSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECBTTBTHHHHHTTCEETTTTEEC
T ss_pred EeccccchhHHHHHHHHHHcHHHHHhCCceEEEEECCCchHHHHHHHHhCCCCCEEecCCCCChhHHHhCCcccccCCcc
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.+++||++|+|+
T Consensus 117 p~~~lid~~g~i~ 129 (153)
T 5C04_B 117 RGTFVVDRSGIIR 129 (153)
T ss_dssp EEEEEECTTSBEE
T ss_pred CeEEEECCCCeEE
No 121
>6B9X_B Ragulator complex protein LAMTOR2; Ragulator, Lamtor, SIGNALING PROTEIN; 1.42A {Homo sapiens} SCOP: d.110.7.1, l.1.1.1
Probab=37.40 E-value=94 Score=21.23 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.....+.+.|.+.=-+|++.+.++|++|.++
T Consensus 3 ~~~~~l~~~l~~l~~~gv~~~~l~~~~G~~i 33 (126)
T 6B9X_B 3 LRPKALTQVLSQANTGGVQSTLLLNNEGSLL 33 (126)
T ss_dssp BCHHHHHHHHHTTCCTTEEEEEEECTTCCEE
T ss_pred CChhHHHHHHHHHcCCCceEEEEECCCCCEE
No 122
>3EYT_B uncharacterized protein SPOA0173; Thioredoxin-like superfamily protein SPOA0173, SILICIBACTER POMEROYI DSS, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for; HET: EDO, ACY, MSE; 1.95A {Silicibacter pomeroyi}
Probab=37.35 E-value=2e+02 Score=19.22 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEeeeCCCCCCHhHH-HHHHHHHhhcCCCCeEEEECCCC------CCCHHHHH-----------------------HHHH
Q FD01543135_043 64 VFDNIAPTTSNVRNI-YDRVNQKVLSGQTNSVVINMADT------SVSIDELK-----------------------QQFS 113 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I-~~~i~~KV~~~Qa~RiVlNL~ds------~~~~~~l~-----------------------~~l~ 113 (133)
++..|++....-... ...+.+-.+......+.+-.-.. .-+.+.+. ....
T Consensus 32 ~l~f~~~~c~~c~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (158)
T 3EYT_B 32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMA 111 (158)
T ss_dssp EEEEECTTCHHCCCCCHHHHHHHHHHSCTTTEEEEEEECCCSSGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHH
T ss_pred EEEeecccCHHHHHcccHHHHHHHHHCCCCCeEEEEEEecCCccccCChHHHHHHHHHcCCCCCEEeCCCCCcccchHHH
Q ss_pred hCCCCCCceEEEEcCCCCcC
Q FD01543135_043 114 DWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 114 ~~Pi~gL~EvivI~k~G~ii 133 (133)
.+.+.+.-.+++||++|+|+
T Consensus 112 ~~~~~~~P~~~lid~~g~i~ 131 (158)
T 3EYT_B 112 AYQMRGTPSLLLIDKAGDLR 131 (158)
T ss_dssp HHTCCSSSEEEEECTTSBEE
T ss_pred HhcccCCCEEEEECCCCcEE
No 123
>2L69_A Rossmann 2x3 fold protein; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, Unknown function, DE NOVO PROTEIN; NMR {artificial gene}
Probab=37.35 E-value=1.2e+02 Score=23.80 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHHHHCCCceEeCCCCCC----CCCCCeeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH
Q FD01543135_043 34 AIILSQRGYNVEQNPSVPG----IKNPDFKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK 109 (133)
Q Consensus 34 A~~LA~~GYdVeQnP~~~~----~knPDy~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~ 109 (133)
+++|...||.|..-+.... - ++..+....-.||-+...+-.+.++.
T Consensus 19 ~~iL~~~Gy~V~~a~sg~~Ale~~------------------------------r~~~~~~~~~pvi~~ta~~~~l~~~i 68 (134)
T 2L69_A 19 KDIIKKNGFKVRTVRSPQELKDSI------------------------------EELVKKYNATIVVVVVDDKEWAEKAI 68 (134)
T ss_dssp HHHHHHTTCEEEEECSHHHHHHHH------------------------------HHHTTCCCCEEEEEECSSHHHHHHHH
T ss_pred HHHHHHCCCEEEEeCCHHHHHHHH------------------------------HHHHhhCCCCEEEEEeCCHHHHHHHH
Q ss_pred HHHHhCCCCCCceEEEEcCC
Q FD01543135_043 110 QQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 110 ~~l~~~Pi~gL~EvivI~k~ 129 (133)
..+.+.+.. -.|++||.+
T Consensus 69 ~~~~~~~~~--~~ILiVDDD 86 (134)
T 2L69_A 69 RFVKSLGAQ--VLIIIYDQD 86 (134)
T ss_dssp HHHHHHCCC--CEEEEECSC
T ss_pred HHHHhcCCc--eEEEEEcCC
No 124
>6PY5_A Putative methyl-accepting chemotaxis protein; Bacterial chemotaxis, chemoreceptor, double Cache, ligand binding domain, SIGNALING PROTEIN; 1.9A {Pseudomonas fluorescens (strain Pf0-1)} SCOP: d.110.6.4
Probab=36.86 E-value=87 Score=22.13 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+......+-..+.++|++|.++
T Consensus 147 ~~~~~l~~~~~~~~~~~~~~~~l~d~~g~ii 177 (250)
T 6PY5_A 147 LSLQTLINTLSARDFSGMGYAFLVSADGKIL 177 (250)
T ss_dssp EEHHHHHHHHHCC--CCSEEEEEEETTSBEE
T ss_pred eeHHHHHHHHhcCCcCCCeEEEEECCCCeEE
No 125
>PF02590.21 ; SPOUT_MTase ; Predicted SPOUT methyltransferase
Probab=36.40 E-value=1.9e+02 Score=22.30 Aligned_cols=50 Identities=2% Similarity=0.093 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMG 130 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G 130 (133)
...|.+++ .....-|+|+-.+-.+|-+++.+.|.+|-..|-++|..+ =+|
T Consensus 56 ~~~il~~l-~~~~~~i~LD~~Gk~~sS~~fa~~l~~~~~~g~~~l~Fv-IGg 105 (154)
T H0UJ61_9BACT/1 56 GAEILKLL-GDRDQLIALDERGRTFTSEAFSKELFSQLDSSPGRLVLL-IGG 105 (154)
T ss_pred HHHHHHhh-CCCCEEEEEcCCCCccCcHHHHHHHHHHHhcCCCeEEEE-EcC
No 126
>1JQL_B DNA Polymerase III, DELTA SUBUNIT; DNA Polymerase, Processivity Clamp, Clamp Loader, DNA Replication, AAA+ ATPase, TRANSFERASE; 2.5A {Escherichia coli} SCOP: c.37.1.20
Probab=35.97 E-value=2.5e+02 Score=20.04 Aligned_cols=66 Identities=5% Similarity=0.021 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CEEEeeeCCCCCCHhHHHHHHHHHhhcCCCC-eEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCC
Q FD01543135_043 62 GEVFDNIAPTTSNVRNIYDRVNQKVLSGQTN-SVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 62 G~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~-RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~ 129 (133)
..++=.|.+..--.+.....|.++....+.. .-++-++ ...++++|...+...|+-+=+.|++| ++
T Consensus 18 ~~~yll~G~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~lf~~~rlv~i-~~ 84 (140)
T 1JQL_B 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-PNTDWNAIFSLCQAMSLFASRQTLLL-LL 84 (140)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCS-TTCCHHHHHHHHHCCCTTCCCEEEEE-EC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHHHCCCceeEeEEcC-CCCCHHHHHHHHhCcCcccCcEEEEE-EC
No 127
>5LTV_B Chemotactic transducer PctC; Ligand binding domain, Pseudomonas aeruginosa, chemotactic transducer, signaling protein; HET: SO4, ABU, ACT, GOL; 2.31A {Pseudomonas aeruginosa} SCOP: d.110.6.0
Probab=35.73 E-value=1.1e+02 Score=22.31 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+.......-..+.++|.+|.++
T Consensus 169 i~~~~l~~~~~~~~~~~~~~~~l~d~~g~ii 199 (273)
T 5LTV_B 169 MKLETLTAILNSLKFDGAGYAFLVSDAGKIL 199 (273)
T ss_dssp EEHHHHHHHHTCC------CEEEEETTSBEE
T ss_pred ccHHHHHHHHHhCCCCCceeEEEECCCCcEE
No 128
>3LOR_B Thiol-disulfide isomerase and thioredoxins; Thiol, isomerase, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative; HET: MSE; 2.2A {Corynebacterium glutamicum}
Probab=34.91 E-value=2.2e+02 Score=18.98 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred HHHHHHHhhcCCCCeEEEECCCC---CCCHHHHH------------------------HHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADT---SVSIDELK------------------------QQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds---~~~~~~l~------------------------~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
+..+.++.......-+.+..+.. .-+.+.+. .....+.+.+.-.+++||++|+
T Consensus 53 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~ 132 (160)
T 3LOR_B 53 AQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132 (160)
T ss_dssp HHHHHHHSCTTTEEEEEEECCCSCTTTSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTCB
T ss_pred HHHHHHHhccCCeEEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCEEecCCCCCCCCchHHHHhCCCCCCEEEEEcCCCc
Q ss_pred cC
Q FD01543135_043 132 PV 133 (133)
Q Consensus 132 ii 133 (133)
|+
T Consensus 133 i~ 134 (160)
T 3LOR_B 133 IR 134 (160)
T ss_dssp EE
T ss_pred EE
No 129
>PF14201.10 ; DUF4318 ; Domain of unknown function (DUF4318)
Probab=34.84 E-value=1.2e+02 Score=21.19 Aligned_cols=42 Identities=5% Similarity=0.162 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 92 NSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 92 ~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+.+++.|+|.+-+.+++...+.++=...=..+.+++++.-++
T Consensus 2 k~f~i~ld~~p~~~~~~~~ai~~yc~~~~~~~~~i~~~~p~~ 43 (73)
T R6N801_9FIRM/1 2 RVMLVDLDECPKSVEAFCIEIERYCIKNGRSLKFVKREKPAE 43 (73)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHhCCEEEEEcCCCCcE
No 130
>6D8V_A Probable chemoreceptor (Methyl-accepting chemotaxis) transmembrane protein; MCP, Chemotaxis, MEMBRANE PROTEIN; HET: PBE; 2.8A {Rhizobium meliloti (strain 1021)}
Probab=34.78 E-value=1e+02 Score=22.10 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.......-..+.++|.+|.++
T Consensus 172 i~~~~l~~~~~~~~~~~~~~~~l~d~~g~ii 202 (269)
T 6D8V_A 172 ISLAALADRLSAVKPFGSGRVYLLSQSGKWL 202 (269)
T ss_dssp EEHHHHHHHHHHSCCCSSCEEEEECTTSBEE
T ss_pred EeHHHHHHHHHccCCCCCcEEEEEcCCCcEE
No 131
>7W0W_B Methyl-accepting chemotaxis protein; Chemoreceptor, Ligand-binding domain, dCache, Malic acid, PROTEIN BINDING; HET: LMR; 2.247A {Bacillus velezensis}
Probab=34.72 E-value=96 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.......-..+.++|.+|.++
T Consensus 164 i~~~~l~~~~~~~~~~~~~~~~l~d~~g~ii 194 (205)
T 7W0W_B 164 MKIDELLKTTKKVNIGKSGYAFILTKDKKVV 194 (205)
T ss_dssp EEHHHHCC---------CCCCCCCEETTEEC
T ss_pred EEHHHHHHHHhhccccCCeeEEEEeCCCcEe
No 132
>PF09019.15 ; EcoRII-C ; EcoRII C terminal
Probab=34.44 E-value=3.9e+02 Score=21.83 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HHHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeE------------CCEEEeeeCCCC-CCHhHHHHHHHHHhhcCC
Q FD01543135_043 24 KRAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKI------------NGEVFDNIAPTT-SNVRNIYDRVNQKVLSGQ 90 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~I------------eG~~fDcYaP~t-~~~r~I~~~i~~KV~~~Q 90 (133)
+.+..-|+.-+.+|...|+..+..+...+++.||+.+ .+. |..=+. ++.|.=|..+..-.....
T Consensus 38 RaG~s~E~~l~~ll~~~gi~~~~q~~~~~~~~~Dfi~P~~~~y~~~~~~~~~---~i~ls~KtTlRERWrQv~~E~~~~~ 114 (165)
T B3EB39_TRIL1/2 38 RAGSSLENHLEVIFNAQGIQYTRTPVTENNEKPDFIFPDIIHYRDPDFDVSK---LTMLGVKSTCKDRWRQILSEADRIK 114 (165)
T ss_pred ccchHHHHHHHHHHHhcCCcceeccccCCCcccceeecchhhccCCCCChhh---eEEEEeccchHHhHHHHHhHHhhhc
Q ss_pred CCeEEEECCCCCCCHHHHHHHHHhC
Q FD01543135_043 91 TNSVVINMADTSVSIDELKQQFSDW 115 (133)
Q Consensus 91 a~RiVlNL~ds~~~~~~l~~~l~~~ 115 (133)
. ..++=|+.. +|-+.|.++-...
T Consensus 115 ~-~~L~Tl~~~-is~~~l~~m~~~~ 137 (165)
T B3EB39_TRIL1/2 115 S-KHLLTLEPG-ISENQTNQMKRSN 137 (165)
T ss_pred c-eEEEecCCC-CCHHHHHHHHHcC
No 133
>5ER9_B UDP-galactopyranose mutase; galactofuranose, enzyme conformation, ISOMERASE; HET: UDP, NO3, SO4, FAD; 1.689A {Mycobacterium smegmatis}
Probab=34.25 E-value=2.3e+02 Score=25.12 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHC-CCceE--eCCCCCCCCCCCeeEC--C-EEEeeeCCCC-CCHhHHHHHHHH
Q FD01543135_043 33 SAIILSQR-GYNVE--QNPSVPGIKNPDFKIN--G-EVFDNIAPTT-SNVRNIYDRVNQ 84 (133)
Q Consensus 33 sA~~LA~~-GYdVe--QnP~~~~~knPDy~Ie--G-~~fDcYaP~t-~~~r~I~~~i~~ 84 (133)
||..|+++ |++|. .--...|+.--.+... | .+||..+-.- ..-..|+..+.+
T Consensus 19 AA~~L~~~~G~~V~vlEa~~~~GG~~~s~~~~~~g~~~~D~G~H~~~~~~~~v~~~~~~ 77 (400)
T 5ER9_B 19 IAERAATQLGKRVLVIERRPHIGGNAYSEPEPETGIEVHKYGAHLFHTSNKRVWDYVRQ 77 (400)
T ss_dssp HHHHHHHHHCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTT
T ss_pred HHHHHHHHhCCcEEEEEcCCCCCCCccceecCCCCcEeeecCCCcccCCCHHHHHHHHh
No 134
>2M4I_A Septum site-determining protein MinC; MinC, Bacillus subtilis, FtsZ inhibitor, CELL CYCLE; NMR {Bacillus subtilis}
Probab=34.08 E-value=2.8e+02 Score=19.96 Aligned_cols=47 Identities=9% Similarity=0.072 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred eeCCCCCCHhHHHHHHHHHhhcC----CCC---eEEEECCCCCCCHHHHHHHHH
Q FD01543135_043 67 NIAPTTSNVRNIYDRVNQKVLSG----QTN---SVVINMADTSVSIDELKQQFS 113 (133)
Q Consensus 67 cYaP~t~~~r~I~~~i~~KV~~~----Qa~---RiVlNL~ds~~~~~~l~~~l~ 113 (133)
.+-+...+...+...+.+|+.+. ... +|+|++.+..++.+++.+...
T Consensus 23 l~l~~~~~~~~l~~~L~~~L~~~~~ff~g~~~~~v~l~~~~r~l~~~~~~~L~~ 76 (105)
T 2M4I_A 23 LHLDDACSFDELLDGLQNMLSIEQYTDGKGQKISVHVKLGNRFLYKEQEEQLTE 76 (105)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCCCCSSCCEEEEEECCCTTCCCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcccccCCCCeEEEEEEECCccCCHHHHHHHHH
No 135
>1WE0_B alkyl hydroperoxide reductase C; Peroxiredoxin, AhpC, OXIDOREDUCTASE; 2.9A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=33.85 E-value=2.6e+02 Score=19.66 Aligned_cols=66 Identities=6% Similarity=-0.054 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhC----------------------CCCCC
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDW----------------------PIDGL 120 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~----------------------Pi~gL 120 (133)
.| ....+.....-..+..+.++.......-|.++.+ +.+.+.+.+... .+...
T Consensus 38 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 113 (187)
T 1WE0_B 38 FYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD----THFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNE 113 (187)
T ss_dssp ECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS----CHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEET
T ss_pred EEccccCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHHHHHHHhcCCCcCcEEEEeeeCccHHHHHhhceeec
Q ss_pred ce------EEEEcCCCCcC
Q FD01543135_043 121 DK------IIAIDKMGEPV 133 (133)
Q Consensus 121 ~E------vivI~k~G~ii 133 (133)
.. +++||++|+|+
T Consensus 114 p~~~~~p~~~lid~~g~i~ 132 (187)
T 1WE0_B 114 ETGLADRGTFIIDPDGVIQ 132 (187)
T ss_dssp TTTEECEEEEEECTTSBEE
T ss_pred CCCCeecEEEEECCCCcEE
No 136
>4KCE_A Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis} SCOP: c.47.1.10
Probab=33.69 E-value=2e+02 Score=21.29 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC---------------------CCCCCCHHHHHHHHHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM---------------------ADTSVSIDELKQQFSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL---------------------~ds~~~~~~l~~~l~~~Pi---- 117 (133)
.| ....+.....-..+..+.++....+..-|+|.. -..++-.+.-......+.+
T Consensus 60 f~~~~~c~~c~~~~~~l~~l~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 139 (213)
T 4KCE_A 60 FYPMDFTFVCPTEIIAFSDRYLEFEKLNTQVIAVSCDSEYSHLAWVNTPRKKGGLGEMKIPVLADKSMEIARDYGVLIES 139 (213)
T ss_dssp EECC----CCTHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETT
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCChhhhHHHHhCcHhhCCCCCCCcCEEeCChHHHHHHhcchhhh
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 140 ~~~~~p~~~lid~~g~i~ 157 (213)
T 4KCE_A 140 AGIALRGLFVIDKKGTLR 157 (213)
T ss_dssp TTEECEEEEEECTTSBEE
T ss_pred cCCCCCEEEEECCCCeEE
No 137
>4KCE_B Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis}
Probab=33.69 E-value=2e+02 Score=21.29 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC---------------------CCCCCCHHHHHHHHHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM---------------------ADTSVSIDELKQQFSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL---------------------~ds~~~~~~l~~~l~~~Pi---- 117 (133)
.| ....+.....-..+..+.++....+..-|+|.. -..++-.+.-......+.+
T Consensus 60 f~~~~~c~~c~~~~~~l~~l~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 139 (213)
T 4KCE_B 60 FYPMDFTFVCPTEIIAFSDRYLEFEKLNTQVIAVSCDSEYSHLAWVNTPRKKGGLGEMKIPVLADKSMEIARDYGVLIES 139 (213)
T ss_dssp ECCSSCTTCCTHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECSSCHHHHHTTCEETT
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCChhhhHHHHhCcHhhCCCCCCCcCEEeCChHHHHHHhcchhhh
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 140 ~~~~~p~~~lid~~g~i~ 157 (213)
T 4KCE_B 140 AGIALRGLFVIDKKGTLR 157 (213)
T ss_dssp TTEECEEEEEECTTCBEE
T ss_pred cCCCCCEEEEECCCCeEE
No 138
>PF07615.15 ; Ykof ; YKOF-related Family
Probab=33.34 E-value=1.9e+02 Score=19.51 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM 98 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL 98 (133)
.++-+.|.+.|++++.+|-.. .|+|. || .+-.+...+.+++.+. ..|+++++
T Consensus 21 ~~~i~~l~~~gl~~~~~~~~T-------~ieG~-~~-------~v~~~i~~~~~~~~~~-~~rv~~~i 72 (81)
T Q8ES37_OCEIH/1 21 YEQIDLSKNTGVQVSHSHYAT-------RLDGD-VN-------DIFSALQQSFDNVREV-VSHVTMTF 72 (81)
T ss_pred HHHHHHHHHhCCeEEecccee-------EEEeC-HH-------HHHHHHHHHHHHHHhh-CCeEEEEE
No 139
>4DSG_B UDP-galactopyranose mutase; Rossmann fold, flavin adenine dinucleotide, ISOMERASE; HET: UDP, FAD; 2.249A {Trypanosoma cruzi}
Probab=33.19 E-value=1.1e+02 Score=26.53 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHCCC-c---eEeCCCCCCCCCCCeeECCEEEe
Q FD01543135_043 33 SAIILSQRGY-N---VEQNPSVPGIKNPDFKINGEVFD 66 (133)
Q Consensus 33 sA~~LA~~GY-d---VeQnP~~~~~knPDy~IeG~~fD 66 (133)
||..|+++|| + +|..+...|.-.-....+|..||
T Consensus 24 aA~~L~~~G~~~v~vlE~~~~~GG~~~s~~~~~g~~~d 61 (484)
T 4DSG_B 24 AAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWD 61 (484)
T ss_dssp HHHHHHHTTCCSEEEEESSSSSCGGGCEEECTTSCEEE
T ss_pred HHHHHHHcCCCCEEEEecCCCCCCccceEEecCCcEEe
No 140
>3KZ5_E Protein sopB; partition, segregation, F plasmid, DNA-binding protein, DNA-binding, DNA BINDING PROTEIN; 1.58A {Escherichia coli}
Probab=33.07 E-value=1.2e+02 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred CCeEEEECCCCCCCHHHHHHH
Q FD01543135_043 91 TNSVVINMADTSVSIDELKQQ 111 (133)
Q Consensus 91 a~RiVlNL~ds~~~~~~l~~~ 111 (133)
.+.|++|||.+.++.+-|.+.
T Consensus 20 gnkV~~~Ld~~kip~~~i~kI 40 (52)
T 3KZ5_E 20 GDKMVLNLDRSRVPTECIEKI 40 (52)
T ss_dssp TTEEEEEEETTTSCHHHHHHH
T ss_pred CCEEEEEeCcccCCHHHHHHH
No 141
>3T1S_A Gliding protein MglB; GTPase activating protein, bacterial polarity, motility, Pole localisation, alpha/beta protein, catalytic GAP domain, Homodimer, SIGNALING PROTEIN; 1.67A {Thermus thermophilus}
Probab=32.83 E-value=99 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+.++.+.|.+. +|+.-++++|.+|.++
T Consensus 13 l~~~l~~l~~~--~gv~~~~l~~~~G~~i 39 (136)
T 3T1S_A 13 AVEVLEETLRE--TGARYALLIDRKGFVL 39 (136)
T ss_dssp HHHHHHHHHHH--HCCSEEEEEETTSCEE
T ss_pred HHHHHHHHHHH--hCCCEEEEEcCCCCEE
No 142
>6U62_F Ragulator complex protein LAMTOR3; signaling complex, GTPase, lysosome, SIGNALING PROTEIN; HET: GTP, GDP;{Homo sapiens} SCOP: d.110.7.1
Probab=32.83 E-value=82 Score=24.05 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CHHHHHHHHHhC--CCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDW--PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~--Pi~gL~EvivI~k~G~ii 133 (133)
.+..|...|++. -++|+.-+.++|++|.+|
T Consensus 1 ~~~~l~~~L~~l~~~~~gv~~~~l~~~dG~~I 32 (162)
T 6U62_F 1 MADDLKRFLYKKLPSVEGLHAIVVSDRDGVPV 32 (162)
T ss_dssp --CHHHHHHHHTSTTSTTCCEEEEEETTCCEE
T ss_pred CchHHHHHHHHHhhhCCCEEEEEEECCCCcEE
No 143
>6MNI_A Methyl-accepting chemotaxis protein; tandem CACHE domain, chemoreceptor, ligand complex, Pseudomonas syringae pv. actinidiae, PscC, SIGNALING PROTEIN; HET: PRO; 1.696A {Pseudomonas syringae pv. actinidiae}
Probab=32.58 E-value=1.2e+02 Score=22.19 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.......-..+.++|++|.++
T Consensus 185 i~~~~l~~~l~~~~~~~~~~~~l~d~~g~ii 215 (287)
T 6MNI_A 185 VSLKQLTNIVKQIKLGESGYLMLMEKNGTVL 215 (287)
T ss_dssp EEHHHHHHHHTTCCBTTTBEEEEEETTSBEE
T ss_pred eeHHHHHHHHhhCccCCCceEEEECCCCcEE
No 144
>1NS5_A Hypothetical protein ybeA; Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Unknown Function; HET: MSE; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=31.83 E-value=1.8e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMG 130 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G 130 (133)
...|.+++.. ..-|+|+-.+-..|-+++.+.|.+|-..| +.|.+| =+|
T Consensus 57 ~~~il~~l~~--~~~i~LDe~Gk~~sS~~fa~~l~~~~~~g-~~l~Fv-IGg 104 (155)
T 1NS5_A 57 GEQMLAAAGK--NRIVTLDIPGKPWDTPQLAAELERWKLDG-RDVSLL-IGG 104 (155)
T ss_dssp HHHHHHHHTT--SEEEEEEEEEECCCHHHHHHHHHHHHHHC-SCEEEE-ECB
T ss_pred HHHHHHHhCC--CeEEEECCCCCcCChHHHHHHHHHHHHcC-CcEEEE-ECC
No 145
>6SCQ_A Cell division protein SepF; Cell Division protein, CELL CYCLE; 1.5A {Corynebacterium glutamicum ATCC 13032}
Probab=31.75 E-value=2.7e+02 Score=19.13 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eeCCCC-CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHH
Q FD01543135_043 67 NIAPTT-SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFS 113 (133)
Q Consensus 67 cYaP~t-~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~ 113 (133)
.++|.+ .....|.+.++ +.+-|+|||.+- +.++.++.+.
T Consensus 9 ~~~p~~~~d~~~i~~~lk------~g~~Vilnl~~l--~~~~~~Ri~D 48 (74)
T 6SCQ_A 9 PVELHSFEDAQVIGGAFR------DGDAVVFDMSLL--SREEARRIVD 48 (74)
T ss_dssp EEECCSGGGHHHHHHHHH------TTCCEEEECTTS--CHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHH------CCCEEEEECCCC--CHHHHHHHHH
No 146
>8FW5_G Schizosaccharomyces pombe LAM2, Human LAMTOR2 ortholog; mTOR complex 1 (mTORC1), Rag GTPase, Gtr GTPase, LAMTOR, GATOR1, nutrient sensing, SIGNALING PROTEIN; HET: GDP;{Homo sapiens}
Probab=31.72 E-value=1.8e+02 Score=23.60 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 93 SVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 93 RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+-..........|...|.+.=-+|+.-+++++++|.+|
T Consensus 13 ~~~~~~~~~m~~~~~L~~~L~~l~~~gV~~a~l~t~dG~li 53 (181)
T 8FW5_G 13 EVLFQGPGSMIKPKKLSSLMKQAVEETVPSIMVFTTTGSLL 53 (181)
T ss_dssp ---------CCCHHHHHHHHHTTCCSSCCCEEEECTTSCEE
T ss_pred eeeecCCccccCHHHHHHHHHHHcCCCCCEEEEEcCCCCEE
No 147
>3U5R_H uncharacterized protein; Structural Genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, hypothetical protein, SMc02350, Unknown Function; 2.05A {Sinorhizobium meliloti} SCOP: c.47.1.0
Probab=31.68 E-value=65 Score=24.54 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECC----------------------CCCCCHHHHHHHHHhCCCCCCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMA----------------------DTSVSIDELKQQFSDWPIDGLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~----------------------ds~~~~~~l~~~l~~~Pi~gL~ 121 (133)
.|..+.+.....-..+..+.++.......-+.++++ .+++-.+.-......+.+.++-
T Consensus 66 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~P 145 (218)
T 3U5R_H 66 FISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTP 145 (218)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEES
T ss_pred EECCCCHHHHHHHHHHHHHHHHHhhCCeEEEEEECCCcccCchhhHHHHHHHHHHhCCCCCEEECCccHHHHHhCCCcCC
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 146 ~~~lid~~g~i~ 157 (218)
T 3U5R_H 146 DFFLYDRERRLV 157 (218)
T ss_dssp EEEEECTTCBEE
T ss_pred eEEEEcCCCeEE
No 148
>8GLV_BR Dynein light chain roadblock LC7a; cilia, microtubule, dynein, MOTOR PROTEIN; HET: GDP, GTP, MG; 3.1A {Chlamydomonas reinhardtii}
Probab=31.62 E-value=99 Score=21.17 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.++...|.+ ++|..-+++++++|.+|
T Consensus 6 ~~~~~l~~l~~--~~gv~~~~l~~~dG~~i 33 (105)
T 8GLV_BR 6 AVDETFKRLQS--HKGVLGIIVINAEGIAI 33 (105)
T ss_pred HHHHHHHHHHc--CCCeeEEEEEcCCCCEE
No 149
>4FU0_B D-alanine--D-alanine ligase 7; Vancomycin resistance, Peptidoglycan synthesis, D-Ala:D-Ser ligase, ATP-grasp domain, LIGASE; HET: ADP, SO4; 2.35A {Enterococcus faecalis} SCOP: c.30.1.0, d.142.1.0
Probab=31.45 E-value=1.6e+02 Score=24.04 Aligned_cols=91 Identities=7% Similarity=0.024 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHHHHHHCCCceEeCCCCCCCCCCCeeE----------------CCEEEeeeCCCCCCHhHHHHHHHHHhhc
Q FD01543135_043 25 RAIWRENESAIILSQRGYNVEQNPSVPGIKNPDFKI----------------NGEVFDNIAPTTSNVRNIYDRVNQKVLS 88 (133)
Q Consensus 25 r~~~RENEsA~~LA~~GYdVeQnP~~~~~knPDy~I----------------eG~~fDcYaP~t~~~r~I~~~i~~KV~~ 88 (133)
.++.---..++.|.+.||+|.---. ...+++.. .-.....|-..+.....+...+.+.+..
T Consensus 19 ~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (357)
T 4FU0_B 19 VSLQSASAVFENINTNKFDIIPIGI---TRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVSQNRSVKGFLEIASDKYRI 95 (357)
T ss_dssp HHHHHHHHHHHHSCTTTEEEEEEEE---CSSCCEEEECSCTHHHHTTCTTTCGGGEEEEEECCCTTTCEEEEC----CEE
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEE---CCCCCEEecCcchHHhhcCccccccccCcceeecccccccceeeeccCccee
Q ss_pred CCCCeEEEECCCCCCCHHHHHHHHHhCCCC
Q FD01543135_043 89 GQTNSVVINMADTSVSIDELKQQFSDWPID 118 (133)
Q Consensus 89 ~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~ 118 (133)
.+.+-|+...++.......+.+.+....++
T Consensus 96 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~ 125 (357)
T 4FU0_B 96 IKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125 (357)
T ss_dssp EECSEEEECCCSHHHHSSHHHHHHHHTTCC
T ss_pred eecCEEEEccCCCCCcchHHHHHHHHcCCC
No 150
>5JLY_C Thioredoxin peroxidase-1; Peroxiredoxin-1, OXIDOREDUCTASE; 3.051A {Schistosoma japonicum} SCOP: c.47.1.0
Probab=31.37 E-value=3e+02 Score=19.52 Aligned_cols=70 Identities=9% Similarity=0.092 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHH---------------------HHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQ---------------------FSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~---------------------l~~~Pi---- 117 (133)
.| ....+.....-..+..+.++....+..-|.+..++.....+.+... ...+.+
T Consensus 45 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 124 (190)
T 5JLY_C 45 FYPADFTFVCPTEIIAFSDEVDQFKSRNCQVIACSTDSKYSHLAWTKQDRKSGGLGDMRIPLLADPTKSIARAYGVLDEE 124 (190)
T ss_dssp ECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECTTSHHHHHTTCEETT
T ss_pred EeCCCCCCCCHHHHHHHHHhHHHHHhCCcEEEEEeCCChHHHHHHHHhhhhcCCCCCCCceEEeCCCchHHHHhCceecC
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.+.-.+++||++|+|+
T Consensus 125 ~~~~~p~~~lid~~g~i~ 142 (190)
T 5JLY_C 125 EGNAFRGLFIIDPKGILR 142 (190)
T ss_dssp TTEECEEEEEECTTSEEE
T ss_pred CCCccceEEEECCCCeEE
No 151
>7CH9_K STAS domain-containing protein; Mla complex, Lipid transporter, MEMBRANE PROTEIN; HET: LPP;{Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}
Probab=31.31 E-value=2.6e+02 Score=18.89 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCHhHHHHHHHHHhhcCCCCeEEEECCC-CCCCHHHHHHHHH
Q FD01543135_043 73 SNVRNIYDRVNQKVLSGQTNSVVINMAD-TSVSIDELKQQFS 113 (133)
Q Consensus 73 ~~~r~I~~~i~~KV~~~Qa~RiVlNL~d-s~~~~~~l~~~l~ 113 (133)
.+...++..+.+.......+++++||.+ ..++...+...+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~viid~~~v~~ids~gl~~l~~ 64 (102)
T 7CH9_K 23 SSGPALREQGGRLIRASQAAELVVDCSAVERSSSVGISLLLA 64 (102)
T ss_dssp THHHHHHHHHHTTTGGGCCSSEEEECTTCCEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCeEEEECccCcccCHHHHHHHHH
No 152
>7F5J_B Peptide Asparaginyl Ligases; AEP, Legumain, Peptide ligase, PAL, PLANT PROTEIN; HET: NAG, HD0, EDO, GOL, FUC; 1.593A {Viola philippica}
Probab=31.12 E-value=4.5e+02 Score=21.55 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHCCC---ceEeCCCCCCCCCCCeeECCEEEeeeC-------------CCCCCHhHHHHHHH-----------H
Q FD01543135_043 32 ESAIILSQRGY---NVEQNPSVPGIKNPDFKINGEVFDNIA-------------PTTSNVRNIYDRVN-----------Q 84 (133)
Q Consensus 32 EsA~~LA~~GY---dVeQnP~~~~~knPDy~IeG~~fDcYa-------------P~t~~~r~I~~~i~-----------~ 84 (133)
.....|.+.|| +|...=......+++...-+.++.-+. .......+|+..+. .
T Consensus 27 ~~~~~L~~~g~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~l~~~~~~~~~~~~~ 106 (282)
T 7F5J_B 27 HMYQILRKGGVKDENIIVFMYDDIAYNESNPFPGIIINKPGGENVYKGVPKDYTGEDINNVNFLAAILGNKSAIIGGSGK 106 (282)
T ss_dssp HHHHHHHHTTCCGGGEEEECCCCSTTCTTCSSTTCCCSSTTCCCTTTTCCCSBCGGGCSHHHHHHHHHTCGGGCCSSCCC
T ss_pred HHHHHHHHcCCCHHHEEEEEeCCCCCCCCCCCCCcEEeCCCCCcccCCCCCCCCCCCCCHHHHHHHHhCCCccccCCCCc
Q ss_pred HhhcCCCCeEEEECCC-----------CCCCHHHHHHHHHhCCC-CCCceEEEE
Q FD01543135_043 85 KVLSGQTNSVVINMAD-----------TSVSIDELKQQFSDWPI-DGLDKIIAI 126 (133)
Q Consensus 85 KV~~~Qa~RiVlNL~d-----------s~~~~~~l~~~l~~~Pi-~gL~EvivI 126 (133)
.......+.+++-+.+ ..++..+|...|.+.+. ...+.+++|
T Consensus 107 ~~~~~~~d~l~iy~sgG~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~~~~ivi 160 (282)
T 7F5J_B 107 VLDTSPNDHIFIYYAXGAPGKIGMPSKPYLYADDLVDTLKQKAATGTYKSMVFY 160 (282)
T ss_dssp CCCCCTTCEEEEEEECEETTEECCSSSSCEEHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred cccCCCCCeEEEEEecCCCCcccCCCCCceeHHHHHHHHHHHHHhCCCceEEEE
No 153
>3LI9_A Hypothetical sensory transduction histidine kinase; PDC fold, SIGNALING PROTEIN; HET: BTB, MSE; 1.7A {Methanosarcina mazei} SCOP: d.110.6.4
Probab=31.07 E-value=1.2e+02 Score=22.29 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.......-..+.++|++|.++
T Consensus 171 i~~~~l~~~~~~~~~~~~~~~~l~d~~g~~i 201 (291)
T 3LI9_A 171 VPLEYVDDVASSIRTFDTGYAFMVSNTGIFL 201 (291)
T ss_dssp EECHHHHHHHTTCCBTTTBEEEEECTTCBBS
T ss_pred eeHHHHHHHHhhCCccCCcEEEEEcCCCcEE
No 154
>6B9X_C Ragulator complex protein LAMTOR3; Ragulator, Lamtor, SIGNALING PROTEIN; 1.42A {Homo sapiens} SCOP: d.110.7.1
Probab=31.05 E-value=92 Score=21.95 Aligned_cols=29 Identities=34% Similarity=0.569 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHHHHhCC--CCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWP--IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~P--i~gL~EvivI~k~G~ii 133 (133)
+..+.+.|.+.= ++|+.-+.++|++|.+|
T Consensus 2 ~~~~~~~L~~l~~~~~gv~~~~l~~~dG~~i 32 (124)
T 6B9X_C 2 ADDLKRFLYKKLPSVEGLHAIVVSDRDGVPV 32 (124)
T ss_dssp CCHHHHHHHHHGGGSTTEEEEEEECTTCCEE
T ss_pred chHHHHHHHHHhhhCCCeeEEEEEcCCCCEE
No 155
>6KHX_D Peroxiredoxin; Peroxiredoxins Akkermansia muciniphila Crystal structure peroxidase activity, OXIDOREDUCTASE; 2.58A {Akkermansia muciniphila} SCOP: c.47.1.0, l.1.1.1
Probab=30.98 E-value=3.3e+02 Score=20.22 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred EE--eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHH---------------------HHHhCCC---
Q FD01543135_043 64 VF--DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQ---------------------QFSDWPI--- 117 (133)
Q Consensus 64 ~f--DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~---------------------~l~~~Pi--- 117 (133)
.| -...|.....-..+..+.++.......-|.++.+......+.+.. ....+.+
T Consensus 39 ~f~~~~~c~~c~~~~~~l~~~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 118 (215)
T 6KHX_D 39 FFYPKDFTFVCPTELIGFQEALGEFDKRDVAVVGCSTDSEFSHWAWVNTPRDQGGIQGVSYPIVSDINKTISADYGVLAG 118 (215)
T ss_dssp EECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCTTCCSCEEECTTSHHHHHTTCBCS
T ss_pred EEccccCCCCChHHHHHHHHHHHHHHhCCeEEEEEeCCChhhhhhhhcCchhcCcccCCCceEEECCCcHHHHHhCceec
Q ss_pred ----------------CCCceEEEEcCCCCcC
Q FD01543135_043 118 ----------------DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 ----------------~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 150 (215)
T 6KHX_D 119 DEEIDEDGNVEVNGELIAYRGLFLIDKDGIVR 150 (215)
T ss_dssp EEEEC---CEEEESCCCBCEEEEEECTTSBEE
T ss_pred CccccCCCceeecCeecccceEEEECCCCeEE
No 156
>PF03698.17 ; UPF0180 ; Uncharacterised protein family (UPF0180)
Probab=30.96 E-value=88 Score=21.83 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHCCCceE
Q FD01543135_043 31 NESAIILSQRGYNVE 45 (133)
Q Consensus 31 NEsA~~LA~~GYdVe 45 (133)
.+-++.|.++||+|.
T Consensus 10 ~~i~~~L~~~Gy~Vv 24 (77)
T Q67SE0_SYMTH/7 10 ENVKQALRAEGYQVT 24 (77)
T ss_pred HHHHHHHHHCCCEEE
No 157
>6IOU_A Methyl-accepting chemotaxis protein; CHEMORECEPTOR, LIGAND COMPLEX, MCP-LIKE PROTEIN, PAS-LIKE DOMAIN, SIGNALING PROTEIN; HET: TRS, SER; 2.1A {Vibrio cholerae} SCOP: d.110.6.0
Probab=30.56 E-value=1.3e+02 Score=21.64 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+.......-..+.++|++|.++
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~l~~~~g~ii 179 (256)
T 6IOU_A 149 VELTQLAQLVNSVNLFDAGYLFITTKDGVTI 179 (256)
T ss_dssp EEHHHHHHHHTCSCGGGTEEEEEECTTSBEE
T ss_pred EeHHHHHHHHHhccccCCcEEEEEcCCCcEE
No 158
>8DQ8_B Amine oxidase; nicotine-degrading enzyme, FLAVOPROTEIN; HET: EDO, NCT, FDA; 1.9A {Pseudomonas putida S16}
Probab=30.47 E-value=3.7e+02 Score=22.01 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred HHHHHHHCCCceEeCCCCCC--CCCCCeeECCEEEeeeCCCC-CCHhHHHHHHHH
Q FD01543135_043 33 SAIILSQRGYNVEQNPSVPG--IKNPDFKINGEVFDNIAPTT-SNVRNIYDRVNQ 84 (133)
Q Consensus 33 sA~~LA~~GYdVeQnP~~~~--~knPDy~IeG~~fDcYaP~t-~~~r~I~~~i~~ 84 (133)
||..|+++|++|.-.-.... ++---+.+.|..||.-+-.- ....+++..+.+
T Consensus 18 aA~~L~~~g~~v~vlE~~~~~GGr~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 72 (432)
T 8DQ8_B 18 AARECGLQGYRTLLLEARSRLGGRTFTSRFAGQEIELGGTWVHWLQPHVWAEMQR 72 (432)
T ss_dssp HHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEESSCCEECTTSHHHHHHHHH
T ss_pred HHHHHHhcCceEEEEecCCCCCCCcceeeeCCeeEEecCccccCCcHHHHHHHHH
No 159
>4FYB_B Thiol:disulfide interchange protein (DsbC); Thioredoxin fold, Reductase, OXIDOREDUCTASE; 2.2A {Helicobacter pylori}
Probab=30.33 E-value=2.6e+02 Score=21.33 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEeeeCCCCCCHhHHHHHHH--HHhhcCCCCeEEEECCCCCCC----------------HHHHHHHHHhCCCCCCceEEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVN--QKVLSGQTNSVVINMADTSVS----------------IDELKQQFSDWPIDGLDKIIA 125 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~--~KV~~~Qa~RiVlNL~ds~~~----------------~~~l~~~l~~~Pi~gL~Eviv 125 (133)
+...+++....-......+. .++.+.-.+++.+-.-....+ .+.-......+.+.+.-.+++
T Consensus 101 vl~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l 180 (241)
T 4FYB_B 101 LLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVL 180 (241)
T ss_dssp EEEEECTTCHHHHHHHHHHHHCHHHHHHHHHHEEEEEEETTSCCEEEEEESCTTCCEEEEEEHHHHHHHTTCCSSSEEEE
T ss_pred EEEEeCCCChHHHHHHHHhhchHHHHHHHHccEEEEEEECCCCCeeeeecccccccceecCCHHHHHHHhCCCCCCEEEE
Q ss_pred EcCCCCcC
Q FD01543135_043 126 IDKMGEPV 133 (133)
Q Consensus 126 I~k~G~ii 133 (133)
||++|+|+
T Consensus 181 id~~G~i~ 188 (241)
T 4FYB_B 181 SDKTGKTI 188 (241)
T ss_dssp ECTTSCEE
T ss_pred ECCCCCEE
No 160
>3HDC_A Thioredoxin family protein; thioredoxin, Geobacter metallireducens, GS-15, ATCC53774, DSM 7210, 11211i, Structural Genomics, PSI-2, Protein Structure Initiative, New York; HET: MSE; 1.771A {Geobacter metallireducens GS-15} SCOP: c.47.1.0, l.1.1.1
Probab=30.32 E-value=2.8e+02 Score=18.93 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH---------------HHHHhCCCCCCceEEEEcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK---------------QQFSDWPIDGLDKIIAIDK 128 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~---------------~~l~~~Pi~gL~EvivI~k 128 (133)
++..|++....-......+..-.......++++-.-+..-...+.. .....+.+.+.-.++++|+
T Consensus 45 li~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~ 124 (158)
T 3HDC_A 45 LVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDR 124 (158)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECT
T ss_pred EEEEEccCCHHHHHHcHHHHHHHHhCCCCCEEEEEeecCccchHHHHhCCCCcceeeCCccHHHHHhCCCCCCcEEEECC
Q ss_pred CCCcC
Q FD01543135_043 129 MGEPV 133 (133)
Q Consensus 129 ~G~ii 133 (133)
+|+|+
T Consensus 125 ~g~v~ 129 (158)
T 3HDC_A 125 KGIIR 129 (158)
T ss_dssp TSBEE
T ss_pred CCeEE
No 161
>1O8X_A TRYPAREDOXIN; TRYPAREDOXIN-I, SYNCHROTRON RADIATION, DISULFIDE BONDS TRYPAREDOXIN, CRITHIDIA FASCICULATA, THIOREDOXIN, TRYPANOSOME, ANOMALOUS DISPERSION, OXIDATIVE STRESS, OXIDOREDUCTASE, ELECTRON; 1.3A {CRITHIDIA FASCICULATA} SCOP: c.47.1.10
Probab=30.18 E-value=2.6e+02 Score=18.53 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCC-CeEEEECCCCCCCHHHH--------------------HHHHHhCCCCCCce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQT-NSVVINMADTSVSIDEL--------------------KQQFSDWPIDGLDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa-~RiVlNL~ds~~~~~~l--------------------~~~l~~~Pi~gL~E 122 (133)
++..+++....-......+..-.+.... ..+.+-.-...-+.+.+ ......+.+.++-.
T Consensus 32 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 111 (146)
T 1O8X_A 32 FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPT 111 (146)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSE
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHhhcCCCEEEEEEccCCChhchhhHhhhCCCccccccchHHHHHHHHHcCCCCCCE
Q ss_pred EEEEcCC-CCcC
Q FD01543135_043 123 IIAIDKM-GEPV 133 (133)
Q Consensus 123 vivI~k~-G~ii 133 (133)
+++||++ |+|+
T Consensus 112 ~~lid~~gg~i~ 123 (146)
T 1O8X_A 112 LIGVDADSGDVV 123 (146)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEcCCCCeEE
No 162
>4MH2_L Thioredoxin-dependent peroxide reductase, mitochondrial; CATENANE, DODECAMER, PEROXIREDOXIN, OXIDOREDUCTASE, Thioredoxin fold, mitochondrial; HET: CIT; 2.2A {Bos taurus} SCOP: c.47.1.0
Probab=30.15 E-value=2.3e+02 Score=21.20 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC---------------------CCCCHHHHHHHHHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD---------------------TSVSIDELKQQFSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d---------------------s~~~~~~l~~~l~~~Pi---- 117 (133)
.| ....+.....-.-+..+.++....+..-+.++.++ +.+-.+.-......+-+
T Consensus 63 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 142 (220)
T 4MH2_L 63 FYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG 142 (220)
T ss_dssp ECSCTTCSSSHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT
T ss_pred EecCccCCCCHHHHHHHHHHHHHHhcCCcEEEEEEcCchHhhHHHHhccHhhCCCcccCeEEEecchhHHHHHhCcccCC
Q ss_pred --CCCceEEEEcCCCCcC
Q FD01543135_043 118 --DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 --~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 143 ~~~~~P~~~lid~~g~i~ 160 (220)
T 4MH2_L 143 PGLALRGLFIIDPNGVIK 160 (220)
T ss_dssp TTEECEEEEEECTTSBEE
T ss_pred CCceecEEEEECCCCcEE
No 163
>PF03572.22 ; Peptidase_S41 ; Peptidase family S41
Probab=30.07 E-value=3.3e+02 Score=19.56 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred hHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 76 RNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 76 r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
..-+...-.++.+..++.+||+|.+|..........+..+-.............+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~lIiDlR~n~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T Q896W4_CLOTE/2 15 PELFKKRIENLLNSNIENLVVDLRGNLGGYTSSAYEIAGYFIGNKTVTIMKDKKGN 70 (163)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCccHHHHHHHHHhhcCCceEEEEECCCCC
No 164
>PF18954.4 ; DUF5697 ; Family of unknown function (DUF5697)
Probab=30.06 E-value=4.2e+02 Score=20.78 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred eeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCc
Q FD01543135_043 58 FKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEP 132 (133)
Q Consensus 58 y~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~i 132 (133)
|..+|+.||...=....-.-+-..++.. .....+.++=|++ ..|+...-+++.---.+++++|++
T Consensus 100 F~~~~~~y~I~~v~~g~E~~~~~~~~~~--~~~~~~~iivle~--------~~qi~~i~~~~~~~f~~v~~~G~v 164 (167)
T R9K0T9_9FIRM/1 100 FVGDGEIYDILYVAPEDVELTNQLFVRR--KIDGCGHIVVVEE--------TEEIPEIHIPDVVGYCTVKEEGQI 164 (167)
T ss_pred EEECCcEEEEEEEChhhHHHHHHHHHhc--CCCCCeEEEEECC--------HHHHhcCCCCCceeEEEECCCCeE
No 165
>4KYZ_D Designed protein OR327; Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, domain insertion, DE NOVO PROTEIN; HET: MSE; 2.492A {synthetic construct}
Probab=29.90 E-value=2e+02 Score=24.45 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred CCEEEee-eCCCC-CCHhHHHHHHHHHhhcCCCCeEEEECCC-CCCCHHHHHHHHH
Q FD01543135_043 61 NGEVFDN-IAPTT-SNVRNIYDRVNQKVLSGQTNSVVINMAD-TSVSIDELKQQFS 113 (133)
Q Consensus 61 eG~~fDc-YaP~t-~~~r~I~~~i~~KV~~~Qa~RiVlNL~d-s~~~~~~l~~~l~ 113 (133)
+|+.||. |.-++ ..+..+|.++.+-+++..++||.+-... ++-+..+|++.|.
T Consensus 13 ~g~~f~~di~i~~~~~lekaLkElv~~lrk~GAkri~i~Ita~~skeAe~Lka~lk 68 (172)
T 4KYZ_D 13 NGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARSSKEAYKFLAILA 68 (172)
T ss_dssp SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHCCSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEcCHHHHHHHHHHHHHHHHHcCCceEEEEEeccCcHHHHHHHHHHH
No 166
>4JGP_A Sporulation kinase D; PAS-like fold, Histidine kinase, Extracytoplasmic, alpha-beta-alpha structure, Structural Genomics, Midwest Center for Structural Genomics, MCSG, PSI-Biology; HET: MSE, PYR; 2.03A {Bacillus subtilis subsp. subtilis}
Probab=29.78 E-value=1.4e+02 Score=20.96 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+.|.+.|.. +..-..++++|.+|.++
T Consensus 147 i~~~~l~~~~~~--~~~~~~~~i~d~~g~ii 175 (217)
T 4JGP_A 147 IQIDYLKNLINL--LSPDVYIEVVNQDGKMI 175 (217)
T ss_dssp EEHHHHHHHHHH--HCTTSCEEEEETTSCEE
T ss_pred eeHHHHHHHHHh--cCCCCeEEEECCCCCEE
No 167
>5CJ9_A Arginine repressor; structural analysis, ArgR, transcriptional regulator, TRANSCRIPTION REGULATOR; 2.409A {Bacillus halodurans} SCOP: a.4.5.3, l.1.1.1, d.74.2.0
Probab=29.31 E-value=2e+02 Score=22.42 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHCCCceEeCCCCCC------CCCCC------eeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEE
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVPG------IKNPD------FKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVIN 97 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~~------~knPD------y~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlN 97 (133)
|.|=.+.|+++||.|.|---+.- .|.++ |.+.... .......+...+..-+..-....-.+-
T Consensus 19 Q~eL~~~L~~~Gi~vtQaTlSRDL~eLgivK~~~~~g~~~Y~~~~~~------~~~~~~~l~~~~~~~~~~i~~~~~~iv 92 (146)
T 5CJ9_A 19 QDELVEQLKAAGYNVTQATVSRDIKELHLVKVPMMDGRYKYSLPADQ------RFNPLQKLKRGLVDSFVSIDRTDNLIV 92 (146)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCEEEECSSSCEEEECCGGG------CCCHHHHHHHHHHHHEEEEEEETTEEE
T ss_pred HHHHHHHHHHCCCcccHHHHHHHHHHcCCeEEECCCCceEeecCccc------CCChHHHHHHHHHhcceEEecCCCEEE
Q ss_pred CCCCCCCHHHHHHHHHhCC-------CCCCceEEEEcCCCC
Q FD01543135_043 98 MADTSVSIDELKQQFSDWP-------IDGLDKIIAIDKMGE 131 (133)
Q Consensus 98 L~ds~~~~~~l~~~l~~~P-------i~gL~EvivI~k~G~ 131 (133)
|.-.++....+...+.+.. +.|-+.|+++.+++.
T Consensus 93 ikT~pG~A~~va~~id~~~~~~i~gtiaGddtvlvi~~~~~ 133 (146)
T 5CJ9_A 93 MKTLPGNAHAIGALIDNLDWTEIMGTICGDDTILIICKDKQ 133 (146)
T ss_dssp EEESTTCHHHHHHHHHTTCCTTEEEEEECSSEEEEEESSTT
T ss_pred EEcCCCCHHHHHHHHHhcCCCceEEEEeCCCEEEEEECCcc
No 168
>3LID_A Putative sensory box/GGDEF family protein; PDC fold, SIGNALING PROTEIN; HET: PO4, EDO; 1.76A {Vibrio parahaemolyticus} SCOP: d.110.6.2
Probab=29.26 E-value=1.1e+02 Score=22.31 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+..... .-..+.++|.+|.++
T Consensus 172 i~~~~l~~~~~~~~~-~~~~~~l~d~~g~ii 201 (295)
T 3LID_A 172 VDIEYLSSLLNYSPV-RDFHIELVKHKGFYI 201 (295)
T ss_dssp EEHHHHHHHHSEETT-TTEECEEEETTSBEE
T ss_pred EEHHHHHHHHhcCCC-CCCeEEEEccCCcEE
No 169
>5OVQ_E Peroxiredoxin; OXIDOREDUCTASE; HET: OCS, UNL; 1.8A {Aquifex aeolicus (strain VF5)} SCOP: c.47.1.0, l.1.1.1
Probab=28.99 E-value=1.2e+02 Score=22.66 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC--------------------CCCCHHHHHHHHHhCCC-------
Q FD01543135_043 65 FDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD--------------------TSVSIDELKQQFSDWPI------- 117 (133)
Q Consensus 65 fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d--------------------s~~~~~~l~~~l~~~Pi------- 117 (133)
|....|.....-..+..+.++.......-|.+..+. +++-.+.-......+-+
T Consensus 42 ~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 121 (223)
T 5OVQ_E 42 PADFTPVCTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGIEIPFPIIADHNMEVAKKYGMIHPAQST 121 (223)
T ss_dssp SCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHSCCCCSCEEECTTSHHHHHTTCCCTTTCS
T ss_pred CCCCCCCCHHHHHHHHHhHHHHHhCCcEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCCEEECCChHHHHHhCCccCccCC
Q ss_pred -CCCceEEEEcCCCCcC
Q FD01543135_043 118 -DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 -~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 122 ~~~~p~~~lid~~G~i~ 138 (223)
T 5OVQ_E 122 TFTVRALFVIDDKGILR 138 (223)
T ss_dssp SSCCEEEEEECTTSBEE
T ss_pred CccceEEEEECCCCeEE
No 170
>3E0U_A Glutathione peroxidase; thioredoxin fold, Oxidoreductase, Peroxidase; HET: GOL; 2.3A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=28.68 E-value=2.8e+02 Score=18.35 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHHhCCCCCCc------------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFSDWPIDGLD------------------ 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~~~Pi~gL~------------------ 121 (133)
.|.-..|.....-.....+.++....+..-+.+.++. ...+...+.+.+....-.+..
T Consensus 32 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (166)
T 3E0U_A 32 NVASRCGYTKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEF 111 (166)
T ss_dssp EECSSCCCCSTHHHHHHHHHHHHGGGTCEEEEEECCTTCC-----------CCSSCCCCSSCBBCCCBSSSTTBCHHHHH
T ss_pred EecCCCCCCcchHHHHHHHHHHhccCCcEEEEEecCccCCCCCCchhhHHHHHhhcccccceeeeeecCCCCcccchhHH
Q ss_pred ------------------eEEEEcCCCCcC
Q FD01543135_043 122 ------------------KIIAIDKMGEPV 133 (133)
Q Consensus 122 ------------------EvivI~k~G~ii 133 (133)
.+++||++|+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 141 (166)
T 3E0U_A 112 MKATIPGLFGTKAIKWNFTSFLIDRHGVPV 141 (166)
T ss_dssp HHHHSCCSSSCSCCCSTTCEEEECTTSCEE
T ss_pred HhccCCcccccccccccceeEEECCCCcEe
No 171
>5Y63_E Alkyl hydroperoxide reductase, C subunit; Oxidoreductase, 2Cys peroxiredoxins; 2.87A {Enterococcus faecalis (strain ATCC 700802 / V583)} SCOP: c.47.1.0
Probab=28.67 E-value=3.3e+02 Score=19.11 Aligned_cols=70 Identities=3% Similarity=-0.075 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHH------------------HHHhCCC------C
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQ------------------QFSDWPI------D 118 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~------------------~l~~~Pi------~ 118 (133)
.| ....+.....-..+..+.++....+..-+.+.+++.....+-+.. ....+.+ .
T Consensus 49 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 128 (183)
T 5Y63_E 49 FYPADFSFVCPTELGDMQEHYAHLQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGM 128 (183)
T ss_dssp ECSCSSCSSHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTTCHHHHTCCSCEEECTTCHHHHHHTCEETTTTE
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhhchhccCCCcEEECCCcHHHHHhCCeeCCCCC
Q ss_pred CCceEEEEcCCCCcC
Q FD01543135_043 119 GLDKIIAIDKMGEPV 133 (133)
Q Consensus 119 gL~EvivI~k~G~ii 133 (133)
+.-.+++||++|+|+
T Consensus 129 ~~p~~~lid~~g~v~ 143 (183)
T 5Y63_E 129 AYRASFIVSPEGDIK 143 (183)
T ss_dssp ECEEEEEECTTSBEE
T ss_pred eEEEEEEECCCCcEE
No 172
>PF05818.16 ; TraT ; Enterobacterial TraT complement resistance protein
Probab=28.50 E-value=1.1e+02 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEee
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDN 67 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDc 67 (133)
++.-...|..+||.|..+|... +|.|.+.+-.|
T Consensus 40 ~~~l~~~L~~kGY~iv~dp~~A-----~y~lq~nv~~~ 72 (213)
T E1QGA2_DESB2/3 40 QYEVSAAIAAKGYQVVYDPRQA-----HFWLMANILSV 72 (213)
T ss_pred HHHHHHHHHhCCCEEecCHHhc-----eEEEEEEEEec
No 173
>4DGK_A Phytoene dehydrogenase; the FAD/NAD(P)-binding Rossmann fold, oxidoreductase; HET: EDO; 2.35A {Pantoea ananatis}
Probab=28.45 E-value=1.8e+02 Score=24.81 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHCCCceE--eCCCCCCCCCCCeeECCEEEee
Q FD01543135_043 33 SAIILSQRGYNVE--QNPSVPGIKNPDFKINGEVFDN 67 (133)
Q Consensus 33 sA~~LA~~GYdVe--QnP~~~~~knPDy~IeG~~fDc 67 (133)
||..||++|++|. ..-...|+.--.+...|-.||.
T Consensus 16 aA~~La~~G~~v~vlE~~~~~GG~~~~~~~~g~~~d~ 52 (501)
T 4DGK_A 16 LAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDA 52 (501)
T ss_dssp HHHHHHHTTCCEEEECCC-------CEEEETTEEEEC
T ss_pred HHHHHHHCCCCEEEEcCCCCCCcCccEEEcCCeEEcc
No 174
>5LTX_B Chemotaxis protein; Ligand binding domain, Pseudomonas aeruginosa, chemotactic transducer, signaling protein; HET: FMT, GOL, MET; 2.02A {Pseudomonas aeruginosa} SCOP: d.110.6.4
Probab=28.28 E-value=1.5e+02 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+......+-..+.++|++|.++
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~d~~g~~i 196 (270)
T 5LTX_B 166 LSLKTLVQIINSLDFSGMGYAFLVSGDGKIL 196 (270)
T ss_dssp ECHHHHHHHHTCSCGGGSEEEEEEETTSBEE
T ss_pred EeHHHHHHHHHcCCCCCCcEEEEEcCCCcEE
No 175
>1J3W_B Giding protein-mglB; Gliding, Motility, mglB, mutational function, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, unknown function; HET: SO4, MES; 1.5A {Thermus thermophilus} SCOP: d.110.7.1
Probab=28.27 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+..+.+.|.+. +|+.-+++++++|.++
T Consensus 16 l~~~l~~l~~~--~gv~~~~l~~~~G~~i 42 (163)
T 1J3W_B 16 AVEVLEETLRE--TGARYALLIDRKGFVL 42 (163)
T ss_dssp HHHHHHHHHHH--HCCSEEEEEETTSCEE
T ss_pred HHHHHHHHHHH--hCCCEEEEEcCCCCEE
No 176
>6HN3_A Phospholipid hydroperoxide glutathione peroxidase; ANTI-OXIDATVE DEFENSE SYSTEM, OXIDOREDUCTASE; 1.01A {Homo sapiens} SCOP: c.47.1.0, l.1.1.1
Probab=28.23 E-value=3.3e+02 Score=19.07 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHHhCC-----------------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFSDWP----------------------- 116 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~~~P----------------------- 116 (133)
.|+...|.....-..+..+..+....+..-+.+..+. ..-+.+.+.+.+....
T Consensus 41 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T 6HN3_A 41 NVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWM 120 (176)
T ss_dssp EECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHH
T ss_pred EEecCCCcchhHHHHHHHHHHHhhcCCeEEEEEEcCccCCCCCCCHHHHHHHHhhcCCcceeeeeeecCCCCcchhHHHh
Q ss_pred -------------CCCCceEEEEcCCCCcC
Q FD01543135_043 117 -------------IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 117 -------------i~gL~EvivI~k~G~ii 133 (133)
+.++-.+++||++|.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 150 (176)
T 6HN3_A 121 KIQPKGKGILGNAIKWNFTKFLIDKNGCVV 150 (176)
T ss_dssp HHSGGGCBTTBSSCCSSCCEEEECTTSCEE
T ss_pred hcCCCCCCcccccceeceeEEEECCCCCEE
No 177
>2JJM_E GLYCOSYL TRANSFERASE, GROUP 1 FAMILY PROTEIN; GLYCOSYL TRANSFER, GLYCOSYLTRANSFERASE, ANTHRAX, NUCLEOTIDE, TRANSFERASE, CARBOHYDRATE; 3.1A {BACILLUS ANTHRACIS}
Probab=27.96 E-value=4.7e+02 Score=20.70 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred HHHHHHCCCceEeCCCCCC----CCCCCeeECCEEEeeeCCCC--CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHH
Q FD01543135_043 34 AIILSQRGYNVEQNPSVPG----IKNPDFKINGEVFDNIAPTT--SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDE 107 (133)
Q Consensus 34 A~~LA~~GYdVeQnP~~~~----~knPDy~IeG~~fDcYaP~t--~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~ 107 (133)
|+.|++.|++|.-.-.... ...+.+.+....+..+.... .........+.+.+.+.+.+-|+++-.....-...
T Consensus 37 ~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 116 (394)
T 2JJM_E 37 GKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAY 116 (394)
T ss_dssp HHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHH
T ss_pred HHHHHHCCCeEEEEecCCccccCcccCCeeEEEeecCceeeeecChhHHHHHHHHHHHHhhcCCCEEEecCcchhHHHHH
Q ss_pred HHHHHHhCCCC
Q FD01543135_043 108 LKQQFSDWPID 118 (133)
Q Consensus 108 l~~~l~~~Pi~ 118 (133)
+...+....++
T Consensus 117 ~~~~~~~~~~~ 127 (394)
T 2JJM_E 117 LAKQMIGERIK 127 (394)
T ss_dssp HHHHHTTTCSE
T ss_pred HHHHHhCCCce
No 178
>PF04592.18 ; SelP_N ; Selenoprotein P, N terminal region
Probab=27.36 E-value=2.2e+02 Score=23.30 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCC---CCeEEEECCCCCC--CHHHHHHHHH-hCCCCC---------------Cce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQ---TNSVVINMADTSV--SIDELKQQFS-DWPIDG---------------LDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Q---a~RiVlNL~ds~~--~~~~l~~~l~-~~Pi~g---------------L~E 122 (133)
.|....+.....-..+..+..|..... ..-|+||.++..- .+..+.+.+. .+|+-- +..
T Consensus 32 f~~~~C~~C~~~~~~L~~l~~~~~~~g~~~i~vv~V~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~P~ 111 (235)
T SELPB_DANRE/28 32 LLKASUHFCLTQAARLGDLRDKLANGGLTNISFMVVNEQDSQSRAMYWELKRRTAQDIPVYQQSPLQNDVWEILEGDKDD 111 (235)
T ss_pred eecCCccchHHHHHHHHHHHHHHHcCCCccEEEEEEeCCchhhHHHHHHHHHHhcCCCcEEeCCCcchhHHHHhcCCCCE
Q ss_pred EEEEcCCCCcC
Q FD01543135_043 123 IIAIDKMGEPV 133 (133)
Q Consensus 123 vivI~k~G~ii 133 (133)
++|||++|+|+
T Consensus 112 ~~iiD~~Grlv 122 (235)
T SELPB_DANRE/28 112 FLVYDRCGYLT 122 (235)
T ss_pred EEEECCCCcEE
No 179
>PF18075.5 ; FtsX_ECD ; FtsX extracellular domain
Probab=27.10 E-value=1.9e+02 Score=19.30 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred eEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCC
Q FD01543135_043 93 SVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 93 RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~ 129 (133)
.|.+-|.+. -.+.+|.+.|+..| +.++|.+++++
T Consensus 2 ~i~v~l~~~-~~~~~l~~~l~~~~--~V~~v~~~s~~ 35 (90)
T E3CVP0_9BACT/5 2 SIQAYMKPD-ADMEATAQRVRRLP--GVKAVEIITAE 35 (90)
T ss_pred eEEEEeCCc-hhHHHHHHHHHcCC--CeeEEEEEcHH
No 180
>4YOD_A thioredoxin-like protein; Thioredoxin fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE; HET: MSE; 1.9A {Bacteroides caccae ATCC 43185}
Probab=27.06 E-value=3.6e+02 Score=22.29 Aligned_cols=70 Identities=7% Similarity=0.200 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHH--HhhcCCCCe-EEEECCCCCCCHHHHHHHHHhCC--------------------CCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQ--KVLSGQTNS-VVINMADTSVSIDELKQQFSDWP--------------------IDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~--KV~~~Qa~R-iVlNL~ds~~~~~~l~~~l~~~P--------------------i~gL 120 (133)
++..|+|....-+.....+.. -..+..... +.+-.-...-+.++..+.+..+| +.+.
T Consensus 178 ll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~vi~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~y~v~~~ 257 (287)
T 4YOD_A 178 LLFINNPGCHACTETIEGLKQAPIISQLIKEKKLIVLSIYPDEELDDWRKHLNEFPKEWINGYDKKFTIKEKQLYDLKAI 257 (287)
T ss_dssp EEEECCSSCHHHHHHHHHHHTCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHHTSSCCSSS
T ss_pred EEEEeCCCCHHHHHHHHHHhcCHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhCCCCcEEEecCCCcccccCccccCCC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.++++|++|+|+
T Consensus 258 P~~~llD~~g~Ii 270 (287)
T 4YOD_A 258 PTLYLLNKEKTVL 270 (287)
T ss_dssp SEEEEECTTCBEE
T ss_pred CeEEEECCCCeEE
No 181
>PF18096.5 ; Thump_like ; THUMP domain-like
Probab=26.92 E-value=3.1e+02 Score=18.33 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 80 DRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 80 ~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
..|++-+.+.+..++-+---+.++++++|++.|.-. .|-.-++++.+.|.
T Consensus 15 k~l~~~lr~~~~~~~~v~~Rg~~~~~~~lrk~l~~~--g~~~~~l~~~r~~~ 64 (73)
T L0DLW3_SINAD/3 15 KTIGKLVTARKLGPLEIKTKGTDLRPEALRAQWKPR--GPHPATLLLMGGKG 64 (73)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHhCCC--CCCCEEEEEEEeCC
No 182
>PF15643.10 ; Tox-PL-2 ; Papain fold toxin 2
Probab=26.92 E-value=1.2e+02 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred eE----CCEEEeeeCCCCCCHhHHHHHH
Q FD01543135_043 59 KI----NGEVFDNIAPTTSNVRNIYDRV 82 (133)
Q Consensus 59 ~I----eG~~fDcYaP~t~~~r~I~~~i 82 (133)
.+ +|++||++.|..-+...-...+
T Consensus 73 ~v~~~~~~~VfDNl~p~G~~~~ewl~~~ 100 (101)
T K9WUF0_9NOST/7 73 AIIIDELEMIFDNHHPDGITREQWLANL 100 (101)
T ss_pred EEEECCEEEEEeCCCCCCccHHHHHHhh
No 183
>3C8C_A Methyl-accepting chemotaxis protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, UNCHARACTERIZED PROTEIN, PREDICTED CHEMOTAXIS PROTEIN, PROTEIN STRUCTURE INITIATIVE, PSI-2, New York SGX; HET: ALA, MSE; 1.5A {Vibrio cholerae O1 biovar eltor str. N16961} SCOP: l.1.1.1, d.110.6.4
Probab=26.82 E-value=1.9e+02 Score=20.34 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+.......-..+.+++++|.++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~l~~~~g~~i 172 (240)
T 3C8C_A 142 VSLAELAELVNEVKLFDAGYVFIVSEDGTTI 172 (240)
T ss_dssp ECHHHHHHHHTCSCCTTSEEEEEEETTSBEE
T ss_pred ecHHHHHHHHHhcCcCCCcEEEEECCCCcEE
No 184
>2B5Y_A YkuV protein; Thioredoxin-like, OXIDOREDUCTASE; NMR {Bacillus subtilis} SCOP: c.47.1.10
Probab=26.80 E-value=3e+02 Score=18.08 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCC--CeEEEECCCC--CCCHHHHHHHHHhCCCCC------------------Cc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQT--NSVVINMADT--SVSIDELKQQFSDWPIDG------------------LD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa--~RiVlNL~ds--~~~~~~l~~~l~~~Pi~g------------------L~ 121 (133)
++..|++....-......+.+-....+. .-+.++++.. ..+.+.+...+..+.+.- .-
T Consensus 33 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 112 (148)
T 2B5Y_A 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVP 112 (148)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHHHHTTTSEEEEEECCCSGGGCCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCCSS
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHhhcceeEEEEECCCCcccCChhHHHHHHHhCCCCCCEEeCCchHHHHhccCCCcC
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.++++|++|+|+
T Consensus 113 ~~~lid~~g~i~ 124 (148)
T 2B5Y_A 113 AYYVFDKTGQLR 124 (148)
T ss_dssp EEEEECTTSBEE
T ss_pred EEEEECCCCcEE
No 185
>PF03259.21 ; Robl_LC7 ; Roadblock/LC7 domain
Probab=26.79 E-value=99 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCCCceEEEEcCCCCcC
Q FD01543135_043 117 IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 117 i~gL~EvivI~k~G~ii 133 (133)
++|..-+.+++++|.++
T Consensus 12 ~~gv~~~~l~~~~G~~~ 28 (88)
T LTOR2_CAEEL/5- 12 TSGVDGSWLFNKEGLLL 28 (88)
T ss_pred CCCccEEEEEcCCCcEE
No 186
>1JR3_D DNA polymerase III, delta subunit; DNA Polymerase, Processivity, Processivity clamp, clamp loader, AAA+ ATPASE, TRANSFERASE; HET: SO4; 2.7A {Escherichia coli} SCOP: c.37.1.20, a.80.1.1
Probab=26.78 E-value=5e+02 Score=21.40 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred eeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCC
Q FD01543135_043 67 NIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 67 cYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~ 129 (133)
.|.|..--.......|.+++.......+.+.--+...+++++...+...|+-+=+.+++| ++
T Consensus 23 i~G~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lf~~~kiiii-~~ 84 (343)
T 1JR3_D 23 LLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLL-LL 84 (343)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEE-EC
T ss_pred EecCChHHHHHHHHHHHHHHHHCCCcceeeEEeCCCCCHHHHHHHHhccccccCceEEEE-Ec
No 187
>1YQH_A IG hypothetical 16092; Bacillus cereus, structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION; HET: MSE; 1.7A {Bacillus cereus ATCC 14579} SCOP: d.58.48.1, l.1.1.1
Probab=26.74 E-value=3.4e+02 Score=19.80 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM 98 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL 98 (133)
.++-+.|.+.|++++.+|-.. .|+|. || .+-.+...+.+.+.+....||++++
T Consensus 28 ~~~i~~l~~~gl~~~~~~~sT-------~ieG~-~~-------~v~~~l~~~~~~~~~~G~~rv~~~i 80 (109)
T 1YQH_A 28 DKAIEVVQQSGVRYEVGAMET-------TLEGE-LD-------VLLDVVKRAQQACVDAGAEEVITSI 80 (109)
T ss_dssp HHHHHHHHHSCSEEEECSSCE-------EEEEC-HH-------HHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHhCCcEEEcCCce-------EEEeC-HH-------HHHHHHHHHHHHHHHCCCCEEEEEE
No 188
>4XMR_B Putative methyl-accepting chemotaxis signal transduction protein; Sensory domain, chemotactic receptor, CcmL, SIGNALING PROTEIN; HET: ILE, SO4; 1.3A {Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)} SCOP: l.1.1.1, d.110.6.4
Probab=26.72 E-value=1.4e+02 Score=21.30 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+.|...+.... ..+.++|++|.++
T Consensus 161 i~~~~l~~~~~~~~----~~~~l~d~~g~~i 187 (254)
T 4XMR_B 161 IPSEDLQNLVAKTP----GNTFLFDQKNKIF 187 (254)
T ss_dssp EEHHHHHHHHHTSS----SSEEEECTTSCEE
T ss_pred eeHHHHHHHHhcCC----CcEEEEcCCCcEE
No 189
>PF16818.9 ; SLM4 ; Protein SLM4
Probab=26.71 E-value=1.4e+02 Score=22.81 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCHHHHHHHHHhCC---------CCCCceEEEEcC-CCCcC
Q FD01543135_043 103 VSIDELKQQFSDWP---------IDGLDKIIAIDK-MGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~P---------i~gL~EvivI~k-~G~ii 133 (133)
+....|...|.+.- .+|+.-++++++ +|.++
T Consensus 2 l~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~L~~~~~G~li 42 (154)
T C5DDY6_LACTC/9 2 LHGKNIHHLLELTLSPVQTVVAEHEPLFSSLLVSCTNGSII 42 (154)
T ss_pred CcchhHHHHHHHhcCCccccccCCCCceEEEEEeCCCCcEE
No 190
>PF13778.10 ; DUF4174 ; Domain of unknown function (DUF4174)
Probab=26.27 E-value=3e+02 Score=17.97 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCCC-CHHHHHHHHHhCCCCC-CceEEEEcCCCCcC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADTSV-SIDELKQQFSDWPIDG-LDKIIAIDKMGEPV 133 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds~~-~~~~l~~~l~~~Pi~g-L~EvivI~k~G~ii 133 (133)
......+..+....-|.++-+...- ..+.-......+.+.. .-.+++||++|.|.
T Consensus 31 l~~~~~~~~~~~~~vv~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~lid~~g~i~ 87 (112)
T F4L4R4_HALH1/2 31 MQEYEASLNERDVKILVIFPTGSKDCAAEDCQGLYNDYQIDPHTFSALLIGKDGTEK 87 (112)
T ss_pred HHHcHHHHhhCCeEEEEEeCCCcccCCHHHhhHHHHHcCCCccceEEEEEcCCCCee
No 191
>4FAK_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase Rossmann fold, rRNA methylation, AdoMet, rRNA, TRANSFERASE, RIBOSOMAL PROTEIN; HET: SAM, PG4; 1.7A {Staphylococcus aureus} SCOP: c.116.1.3, l.1.1.1
Probab=26.23 E-value=2.5e+02 Score=21.91 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCC
Q FD01543135_043 80 DRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMG 130 (133)
Q Consensus 80 ~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G 130 (133)
..|.+++ +....-|+|+-.+-.+|-+++.+.|.+|-..|-+.|..+ =+|
T Consensus 65 ~~il~~l-~~~~~~i~LDe~Gk~~sS~~fa~~l~~~~~~g~~~i~Fv-IGg 113 (163)
T 4FAK_A 65 QRILAKI-KPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFV-IGG 113 (163)
T ss_dssp HHHHHTC-CTTSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEE-ECB
T ss_pred HHHHHhc-CCCCEEEEECCCCcccChHHHHHHHHHHHHcCCCCEEEE-Ecc
No 192
>7KNF_B 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; phosphoglycerate mutase, ipglycermide, peptide inhibitors, metal ion binding, ISOMERASE; HET: DTY, CSO, PG4; 1.8A {Caenorhabditis elegans}
Probab=26.20 E-value=4.6e+02 Score=24.71 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCC-----------------CHhHHHHHHHHHhhcCCCCeEEE
Q FD01543135_043 34 AIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTS-----------------NVRNIYDRVNQKVLSGQTNSVVI 96 (133)
Q Consensus 34 A~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~-----------------~~r~I~~~i~~KV~~~Qa~RiVl 96 (133)
++.|+++||+.-..........--|...|..-..|.+... +...+.+.+.+.+++...+-+++
T Consensus 323 ~e~L~~~G~~~~~iae~~k~~~v~~f~~g~~~~~~~~e~~~~ip~~~~~~y~~~p~~~~~~i~~~~~~~l~~~~~~fi~v 402 (538)
T 7KNF_B 323 AEWLAEQKVSQFHCAETEKYAHVTFFFNGGLEKQFEGEERCLVPSPKVATYDLQPEMSAAGVADKMIEQLEAGTHPFIMC 402 (538)
T ss_dssp HHHHHHTTCCEEEEEEGGGHHCCCCCTTTSSCCCCTTEEEEEECCCCCSSGGGSTTTTHHHHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHccCeeeeccCcccceeEEEeecCceeeeeeccccccCCCCCcccccCCcchhhhhHHHHHHHHHHhCCCCceEE
Q ss_pred ECCC
Q FD01543135_043 97 NMAD 100 (133)
Q Consensus 97 NL~d 100 (133)
|+..
T Consensus 403 n~~~ 406 (538)
T 7KNF_B 403 NFAP 406 (538)
T ss_dssp EECH
T ss_pred ecCC
No 193
>PF05176.18 ; ATP-synt_10 ; ATP10 protein
Probab=25.90 E-value=2e+02 Score=23.74 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCC--CceEEEEcCCCCcC
Q FD01543135_043 78 IYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDG--LDKIIAIDKMGEPV 133 (133)
Q Consensus 78 I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~g--L~EvivI~k~G~ii 133 (133)
+...+++.+.+.+-...++- |......++++.|. +.+ +--+++||++|+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~l~---i~~~~~p~v~lID~~G~Ir 233 (254)
T Q6CPH0_KLULA/2 181 VKNRYASIVPPHRHDKTFIS--NRDQLPFQIREQLQ---INNLYSGYVFVVDENLKIR 233 (254)
T ss_pred HHHHHHhcCCHHHcCCEEEE--cCCCCcHHHHHHhC---CCCCCeeEEEEECCCCeEE
No 194
>PF13788.10 ; DUF4180 ; Domain of unknown function (DUF4180)
Probab=25.84 E-value=2.2e+02 Score=19.44 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred EEeeeCCCC-CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHH
Q FD01543135_043 64 VFDNIAPTT-SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSID 106 (133)
Q Consensus 64 ~fDcYaP~t-~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~ 106 (133)
.++ +.+.+ .....++..+.+.+...+..+++++..+......
T Consensus 8 ~v~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~d~~~~~~~~~ 50 (111)
T A0A6L7H575_BAC 8 VIR-NNKVLISDVQSALDTMATVQYEVNAKHIIIHKSLISEDFF 50 (111)
T ss_pred EEe-cCCccccCHHHHHHHHHHHHHHcCCCEEEEEHHHcCCccc
No 195
>PF13366.10 ; PDDEXK_3 ; PD-(D/E)XK nuclease superfamily
Probab=25.67 E-value=3.8e+02 Score=18.91 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHHHHCCCceEeCCCCC---------CCCCCCeeECCE-EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECC
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVP---------GIKNPDFKINGE-VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMA 99 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~---------~~knPDy~IeG~-~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ 99 (133)
++.-+..|...|+.++...... ....+|+.|+++ +.++-+....+...+.....---..+-..-+++|..
T Consensus 28 ~~~l~~~l~~~~i~~~~~~~~~~~~~g~~i~~~~~~D~iv~~~ivveik~~~~~~~~~~~q~~~yl~~~~~~~G~l~nf~ 107 (118)
T Q39QK9_GEOMG/1 28 EACLAYELSEAGLHVERQKVLPVRYKNINLDDGLRMDLVVENRIILELKCVDTILPVHEAQLQTYLKLSGLRVGLLMNFY 107 (118)
T ss_pred HHHHHHHHHHCCCeEEEeeeeeEEeCCEeCCcceEEEEEEcCeEEEEEEecccCCHHHHHHHHHHHHHcCCCEEEEEecC
Q ss_pred CCCCC
Q FD01543135_043 100 DTSVS 104 (133)
Q Consensus 100 ds~~~ 104 (133)
...+.
T Consensus 108 ~~~~~ 112 (118)
T Q39QK9_GEOMG/1 108 TKYLK 112 (118)
T ss_pred cchhc
No 196
>3BM3_B PspGI restriction endonuclease; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, PSPGI, BASE FLIPPING, HYDROLASE-DNA COMPLEX; HET: MSE, CIT; 1.7A {Pyrococcus sp. GI-H}
Probab=25.27 E-value=7.4e+02 Score=22.10 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred HHHHHHHHHHHHHHHHCCCceEeCC------CCCCCCCCCeeECC------EEEeeeCCCC-CCHhHHHHHHHHHhh---
Q FD01543135_043 24 KRAIWRENESAIILSQRGYNVEQNP------SVPGIKNPDFKING------EVFDNIAPTT-SNVRNIYDRVNQKVL--- 87 (133)
Q Consensus 24 ~r~~~RENEsA~~LA~~GYdVeQnP------~~~~~knPDy~IeG------~~fDcYaP~t-~~~r~I~~~i~~KV~--- 87 (133)
+.+..-|+.-+.+|...|+..+..+ ...+++.||+.|.+ ..-.|..=+. ++.|.=|..+-.-..
T Consensus 99 RaG~sfE~~i~~lL~~~gI~~~~q~~i~~~~~~~~~~~~DfviP~~~~y~~~~~~~~~ls~KtTLRERWrQv~~e~~~i~ 178 (272)
T 3BM3_B 99 RGGKAFEIIFTKLLNKFGIRYEHDRVIKIYDYITEGEKPAFIIPSVRTFLNDPSSAILITVKRKVRERWREAVGEAQILR 178 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEESCCBCSSTTCSCCBCCSEEESCHHHHHHCGGGCEEEEECSSCTTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCcceecCceeeEeeccCCCccCEEecCHHHhhcCCcceEEEEechhHHHHHHHHHHHHHHHH
Q ss_pred ---cCCCCeEEEECCCCCCCHHHHHHH
Q FD01543135_043 88 ---SGQTNSVVINMADTSVSIDELKQQ 111 (133)
Q Consensus 88 ---~~Qa~RiVlNL~ds~~~~~~l~~~ 111 (133)
..+..-+++-| |..+|.+.+...
T Consensus 179 ~k~~~~~~~~LiTl-d~dis~~k~~em 204 (272)
T 3BM3_B 179 NKFGDEINFWFVGF-DEEFTIYSAIAM 204 (272)
T ss_dssp HHHCTTCCEEEECC-CTTCCHHHHHHH
T ss_pred HhhCCCceEEEEec-CCCCCHHHHHHH
No 197
>7YLA_6 GTPase HflX; HflX, RIBOSOME; HET: PSU, GNP; 2.52A {Escherichia coli}
Probab=25.06 E-value=2.6e+02 Score=25.04 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHCCCceEeCCCCCC-CCCCCeeE-CCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHH
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPG-IKNPDFKI-NGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDEL 108 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~-~knPDy~I-eG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l 108 (133)
.|+..+....||.|...-.... ..+|.|.| .|++ +.|.++++...++.||+| +.+++.+.
T Consensus 28 ~e~~~l~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~---------------~~~~~~~~~~~~~~v~~~---~~l~~~q~ 89 (426)
T 7YLA_6 28 QEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKA---------------VEIAEAVKATGASVVLFD---HALSPAQE 89 (426)
T ss_dssp HHHHHHHHHHTCEEEEEEEEECSSCCTTTSSCHHHH---------------HHHHHHHHHHTCSEEEES---SCCCHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEEecCCCCCceecCccHH---------------HHHHHHHHHcCCCEEEEC---CCCCHHHH
Q ss_pred HHHHHhCCCCCCceEEEE
Q FD01543135_043 109 KQQFSDWPIDGLDKIIAI 126 (133)
Q Consensus 109 ~~~l~~~Pi~gL~EvivI 126 (133)
+..-..+.++=++..-+|
T Consensus 90 ~~l~~~~~~~v~dr~~li 107 (426)
T 7YLA_6 90 RNLERLCECRVIDRTGLI 107 (426)
T ss_dssp HHHHHHSSSEEECHHHHH
T ss_pred HHHHHHhCCeeecCCchH
No 198
>2PN8_I Peroxiredoxin-4; PEROXIREDOXIN, THIOREDOXIN, OXIDOREDUCTASE, STRUCTURAL GENOMICS CONSORTIUM, SGC; 1.8A {Homo sapiens} SCOP: c.47.1.0, l.1.1.1
Probab=24.93 E-value=2.8e+02 Score=20.69 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC---------------------CCCCHHHHHHHHHhCCCC---
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD---------------------TSVSIDELKQQFSDWPID--- 118 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d---------------------s~~~~~~l~~~l~~~Pi~--- 118 (133)
.| .-..+.....-..+..+..+.......-|+++.+. +++-.+.-......+-+.
T Consensus 55 f~~~~~c~~c~~~~~~l~~l~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 134 (211)
T 2PN8_I 55 FYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLED 134 (211)
T ss_dssp ECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETT
T ss_pred EcccccCCcCHHHHHHHHHHHHHHHhCCeEEEEEECCCHHHhHHHHhccHhhCCCCCCccceecCCccHHHHHhCcEecC
Q ss_pred ---CCceEEEEcCCCCcC
Q FD01543135_043 119 ---GLDKIIAIDKMGEPV 133 (133)
Q Consensus 119 ---gL~EvivI~k~G~ii 133 (133)
++-.+++||++|+|+
T Consensus 135 ~~~~~p~~~lid~~g~i~ 152 (211)
T 2PN8_I 135 SGHTLRGLFIIDDKGILR 152 (211)
T ss_dssp TTEECEEEEEECTTSBEE
T ss_pred CCCcccEEEEEcCCCeEE
No 199
>PF13590.10 ; DUF4136 ; Domain of unknown function (DUF4136)
Probab=24.93 E-value=1.8e+02 Score=21.05 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHHCCCceEeCCCCCCCCCCCeeE
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVPGIKNPDFKI 60 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~~~knPDy~I 60 (133)
++.-...|.++||. ....+||+.|
T Consensus 36 ~~~i~~~L~~~G~~-------~~~~~~d~~v 59 (161)
T Q1ISP0_KORVE/2 36 KNTIQQEFAKRGLT-------QVESGGDLIL 59 (161)
T ss_pred HHHHHHHHHHCCCe-------eccCCCCEEE
No 200
>6FU4_A Probable chemotaxis transducer; chemotaxis, Pseudomonas aeruginosa, signaling protein, chemoreceptor, histamine; HET: HSM, MSE, PO4, GOL; 2.45A {Pseudomonas aeruginosa PAO1}
Probab=24.89 E-value=1.8e+02 Score=21.82 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCC---CCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWP---IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~P---i~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.... ..+-..+.++|.+|.++
T Consensus 225 i~~~~l~~~~~~~~~~~~~~~~~~~l~d~~g~ii 258 (345)
T 6FU4_A 225 INLSNLQALSEQGNRELYDGVGQVGILSPAGLFA 258 (345)
T ss_dssp EEHHHHHHHHHHHHHTSGGGTSEEEEECTTSBEE
T ss_pred EeHHHHHHHHHhcCccccCCCceEEEECCCCeEE
No 201
>3KA7_A Oxidoreductase; OXIDOREDUCTASE, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; HET: FAD, MSE; 1.8A {Methanosarcina mazei}
Probab=24.85 E-value=2.5e+02 Score=23.23 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHCCCceE--eCCCCCCCCCCCeeECCEEEeeeC
Q FD01543135_043 33 SAIILSQRGYNVE--QNPSVPGIKNPDFKINGEVFDNIA 69 (133)
Q Consensus 33 sA~~LA~~GYdVe--QnP~~~~~knPDy~IeG~~fDcYa 69 (133)
||..|+++|++|. ..-...|+.-=-+...|-.||..+
T Consensus 15 aA~~L~~~G~~V~vlE~~~~~GG~~~~~~~~g~~~~~g~ 53 (425)
T 3KA7_A 15 SAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGA 53 (425)
T ss_dssp HHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSS
T ss_pred HHHHHHHCCCcEEEEcCCCCCCcceeeeEeCCEEEeccc
No 202
>6ELW_A Phospholipid hydroperoxide glutathione peroxidase, mitochondrial; HUMAN GPX4, PEROXIDASE, SELENOPROTEIN, THIOREDOXIN-FOLD, ANTI-OXIDATVE DEFENSE SYSTEM, OXIDOREDUCTASE; 1.3A {Homo sapiens} SCOP: c.47.1.0
Probab=24.81 E-value=4.2e+02 Score=19.10 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC----CCCCHHHHHHHHHhCCCCC--------------------
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD----TSVSIDELKQQFSDWPIDG-------------------- 119 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d----s~~~~~~l~~~l~~~Pi~g-------------------- 119 (133)
.|....|.....-..+..+.++.....-.-+.+.++. ...+.+++++.+..++...
T Consensus 63 f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (192)
T 6ELW_A 63 NVASQXGKTEVNYTQLVDLHARYAEAGLRILAFPSNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKIAVNGDDAHPLWKWM 142 (192)
T ss_dssp EECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCCCSSTTSCHHHHHH
T ss_pred EecCCCCccHHHHHHHHHHHHHHhhCCcEEEEEEcCccCCCCCCCHHHHHHHHHhcCCCcceeeEeecCCcccchHHHhh
Q ss_pred -Cc---------------eEEEEcCCCCcC
Q FD01543135_043 120 -LD---------------KIIAIDKMGEPV 133 (133)
Q Consensus 120 -L~---------------EvivI~k~G~ii 133 (133)
.. .+++||++|+|+
T Consensus 143 ~~~~~~~~~~~~~~~~~p~~~lid~~g~i~ 172 (192)
T 6ELW_A 143 KIQPKGKGILGNAIKWNFTKFLIDKNGAVV 172 (192)
T ss_dssp HHSTTCCCSSCSSCCSSCCEEEECTTSCEE
T ss_pred hcCCCCCCccCCcceecceEEEECCCCCEE
No 203
>6F9G_B Methyl-accepting chemotaxis protein McpU; Ligand binding domain, SIGNALING PROTEIN, CHEMOTACTIC TRANSDUCER; HET: PUT, GOL; 2.388A {Pseudomonas putida KT2440}
Probab=24.74 E-value=1.7e+02 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred CCHHHHHHHHHhCC---CCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWP---IDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~P---i~gL~EvivI~k~G~ii 133 (133)
++++.|.+.+.+.. ...-..+.++|++|.++
T Consensus 221 i~~~~l~~~~~~~~~~~~~~~~~~~l~d~~g~ii 254 (321)
T 6F9G_B 221 IGLANLQQLSVNGRRDLFDGQGQVSIATAAGLLA 254 (321)
T ss_dssp EEHHHHHHHHHHHHHTSTTTTSEEEEECTTSBEE
T ss_pred EeHHHHHHHHHhCcccccCCCceEEEEeCCceEE
No 204
>PF12324.12 ; HTH_15 ; Helix-turn-helix domain of alkylmercury lyase
Probab=24.71 E-value=1.7e+02 Score=20.42 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+++.+.|..+| -+..|.+|+||
T Consensus 47 ~~~~~v~~~L~~~~------~~~~D~~G~Iv 71 (74)
T F4CKR9_PSEUX/7 47 TSVDQVRQALAAEP------DTEYDADGRVV 71 (74)
T ss_pred CCHHHHHHHHHcCC------CeEECCCCCEe
No 205
>PF03190.19 ; Thioredox_DsbH ; Protein of unknown function, DUF255
Probab=24.63 E-value=3.9e+02 Score=18.65 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHH------HHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHH-hCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIY------DRVNQKVLSGQTNSVVINMADTSVSIDELKQQFS-DWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~------~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~-~~Pi~gL~EvivI~k~G~ii 133 (133)
++..|++....-+... ..+.++. ...-.-+-++.++..-........+. .+.+.+.-.++++|++|+++
T Consensus 41 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~ 116 (163)
T O26847_METTH/6 41 FLSIGYSTCHWCHVMARESFENPEIADIL-NRDFVSVKVDREERPDIDAIYMRVCQMMTGAGGWPLTIIMTPEGEPF 116 (163)
T ss_pred EEEEECCCcHHHHHHHHHhhcCHHHHHHH-hhcceEEEEeCCcCCchHHHHHHHHHHHhCCCCccEEEEECCCCCee
No 206
>3BY8_A Sensor protein dcuS; histidine kinase sensor domain, Inner membrane, Membrane, Phosphoprotein, Transferase, Transmembrane, Two-component regulatory system; 1.45A {Escherichia coli} SCOP: d.110.6.1
Probab=24.44 E-value=2.2e+02 Score=17.97 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+..+...+... +++..+.++|.+|.++
T Consensus 43 ~~~~~~~~~~~--~~~~~~~i~~~~g~~~ 69 (142)
T 3BY8_A 43 IQAIAEAVRKR--NDLLFIVVTDMQSLRY 69 (142)
T ss_dssp HHHHHHHHHHH--TTCSEEEEEETTCBBS
T ss_pred HHHHHHHHHhc--CCceEEEEEcCCCcEE
No 207
>5DVB_J Tsa2p; Oxidoreductase, Peroxiredoxin, Peroxidase, Oxidative Stress; 2.2A {Saccharomyces cerevisiae} SCOP: l.1.1.1, c.47.1.10
Probab=24.41 E-value=4.7e+02 Score=19.57 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEeeeC---CCCC-CHhHHHHHHHHHhhcCCCCeEEEECCC---------------------CCCCHHHHHHHHHhCCC-
Q FD01543135_043 64 VFDNIA---PTTS-NVRNIYDRVNQKVLSGQTNSVVINMAD---------------------TSVSIDELKQQFSDWPI- 117 (133)
Q Consensus 64 ~fDcYa---P~t~-~~r~I~~~i~~KV~~~Qa~RiVlNL~d---------------------s~~~~~~l~~~l~~~Pi- 117 (133)
++..++ +... .....+..+.++.......-|.+..+. +++-.+.-......+.+
T Consensus 57 ll~f~~~~c~~c~~~~~~~l~~~~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 136 (217)
T 5DVB_J 57 VLAFVPLAFSFVSPTEIVAFSDAAKKFEDQGAQVLFASTDSEYSLLAWTNLPRKDGGLGPVKVPLLADKNHSLSRDYGVL 136 (217)
T ss_dssp EEEECCCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCCCSSCEEECTTSHHHHHTTCE
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHhccccccCCCCCcceeeccccchHHHHHhCCE
Q ss_pred -----CCCceEEEEcCCCCcC
Q FD01543135_043 118 -----DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 -----~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 137 ~~~~~~~~P~~~lid~~g~i~ 157 (217)
T 5DVB_J 137 IEKEGIALRGLFIIDPKGIIR 157 (217)
T ss_dssp ETTTTEECEEEEEECTTSBEE
T ss_pred eccCCcceeEEEEECCCCeEE
No 208
>PF13756.10 ; Stimulus_sens_1 ; Stimulus-sensing domain
Probab=24.39 E-value=2.3e+02 Score=19.85 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++.+..++.|++.-.+.=.+|.|+|.+|++|
T Consensus 1 l~~~~a~~~l~rL~~~~~~r~rlfd~~G~ll 31 (110)
T F7QGB1_9BRAD/1 1 INPERVAPVLRRLISPTKTRARIYDRDGVLV 31 (110)
T ss_pred CCHHHHHHHHHHhhCCCCCEEEEECCCCCEE
No 209
>1O6D_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3, l.1.1.1
Probab=24.01 E-value=3e+02 Score=21.60 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMG 130 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G 130 (133)
...|.+++ +....-|+|+-.+-.+|-+++.+.|.+|-..|- +|.++ =+|
T Consensus 55 ~~~ll~~i-~~~~~vI~LDe~Gk~~sSe~fa~~l~~~~~~g~-~l~Fv-IGg 103 (163)
T 1O6D_A 55 TEDLTNRI-LPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGK-DITIL-IGG 103 (163)
T ss_dssp HHHHHTTC-CTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTC-CEEEE-ECC
T ss_pred HHHHHhhc-CCCCEEEEEcCCCCccCHHHHHHHHHHHHHcCC-CEEEE-ECC
No 210
>1I5G_A TRYPAREDOXIN II; tryparedoxin, electron transport; HET: TS5; 1.4A {Crithidia fasciculata} SCOP: c.47.1.10
Probab=23.87 E-value=3.7e+02 Score=18.09 Aligned_cols=70 Identities=10% Similarity=0.191 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCC-eEEEECCCCCCCHHHHHHHHHhCC--------------------CCCCce
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTN-SVVINMADTSVSIDELKQQFSDWP--------------------IDGLDK 122 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~-RiVlNL~ds~~~~~~l~~~l~~~P--------------------i~gL~E 122 (133)
++..+++....-......+.+-.+..... ++.+-.-...-+.+.+.+.+..++ +.++-.
T Consensus 32 ~l~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 111 (144)
T 1I5G_A 32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPT 111 (144)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSE
T ss_pred EEEEEecCCHHHHHhHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHhCCCeeCCCCChhhHHHHHhcCCCCCccE
Q ss_pred EEEEcCC-CCcC
Q FD01543135_043 123 IIAIDKM-GEPV 133 (133)
Q Consensus 123 vivI~k~-G~ii 133 (133)
++++|++ |+|+
T Consensus 112 ~~lid~~~g~i~ 123 (144)
T 1I5G_A 112 LVGVEADSGNII 123 (144)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEECCCCCcee
No 211
>3MCB_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, Chaperone; 1.9A {Homo sapiens}
Probab=23.82 E-value=1e+02 Score=19.94 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCCCceEEEEcCCCCcC
Q FD01543135_043 116 PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 116 Pi~gL~EvivI~k~G~ii 133 (133)
+++|++||-+...+|+++
T Consensus 3 ~i~~i~ev~~~~~dg~v~ 20 (58)
T 3MCB_B 3 NISGIEEVNMFTNQGTVI 20 (58)
T ss_dssp EECCCCEEEEEETTSEEE
T ss_pred CCCCceEEEEEecCCeEE
No 212
>PF09984.13 ; sCache_4 ; Single cache domain 4
Probab=23.39 E-value=2.4e+02 Score=18.39 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+..+...+...|-+++..+.++|.+|+++
T Consensus 38 ~~~~l~~~~~~~~~~i~~v~i~d~~g~~~ 66 (148)
T W0I1D2_9GAMM/3 38 VRHLVNLLHRHHSDIVRSISLFDANNTLF 66 (148)
T ss_pred HHHHHHHHHhcCCCcEEEEEEECCCCCEE
No 213
>1TO0_F Hypothetical UPF0247 protein yyda; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; HET: MSE; 2.5A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.07 E-value=3.4e+02 Score=21.39 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCC
Q FD01543135_043 79 YDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMG 130 (133)
Q Consensus 79 ~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G 130 (133)
...|.+++ +....-|+|+-.+-.+|-+++.+.|.+|-..|-++|.++ =+|
T Consensus 60 ~~~ll~~l-~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~l~Fv-IGg 109 (167)
T 1TO0_F 60 GDRILSKI-SPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFV-IGG 109 (167)
T ss_dssp HHHHHTTC-CTTSEEEEEEEEEEECCHHHHHHHHHHTTTTSCCEEEEE-ECC
T ss_pred HHHHHhcC-CCCCEEEEEeCCCcccChHHHHHHHHHHHHcCCCCEEEE-Ecc
No 214
>7UEK_A OT3; TIM barrel, de novo, oval curvature, DE NOVO PROTEIN; 2.1A {synthetic construct}
Probab=22.99 E-value=8.5e+02 Score=22.00 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred HHHHHHHHCCCc----eEeCCCCCCCCCCCe-----eEC---------CEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCe
Q FD01543135_043 32 ESAIILSQRGYN----VEQNPSVPGIKNPDF-----KIN---------GEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNS 93 (133)
Q Consensus 32 EsA~~LA~~GYd----VeQnP~~~~~knPDy-----~Ie---------G~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~R 93 (133)
+||..+.+.|++ +-.. .+-|- .++ |--.=.|+-.+++.+.+...++.=. +..++=
T Consensus 58 eaaK~~~e~G~d~~ivILI~------d~Ddk~~~~k~vee~~e~l~K~G~k~rtV~~~~~D~E~lK~~ik~a~-k~Ga~i 130 (242)
T 7UEK_A 58 VAAKVLHDLGAEEAIIILIF------DIDDEDEFKKQVKKALELMKKLGVDHRIIALRMTDEEKFKKLAKIAA-ELGADA 130 (242)
T ss_dssp HHHHHHHHHTCTTCEEEEEE------CCSCHHHHHHHHHHHHHHHHHTTCSCEEEEEECCSHHHHHHHHHHHH-HHTCSE
T ss_pred HHHHHHHHCCCcceEEEEEE------eCCChhHHHHHHHHHHHHHHHcCCCeEEEeccCCCHHHHHHHHHHHH-HhCCCE
Q ss_pred EEEECCCCCCCHHHHHHHHHhCCCCCCceEEEE
Q FD01543135_043 94 VVINMADTSVSIDELKQQFSDWPIDGLDKIIAI 126 (133)
Q Consensus 94 iVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI 126 (133)
+|+.++++. +..++.+.+...--.|++.++++
T Consensus 131 ~Iiv~d~d~-~~~~vk~~vE~lkK~G~kviv~l 162 (242)
T 7UEK_A 131 ICIYLDESA-TWKDMKKAMEILYKLGVKKIVVL 162 (242)
T ss_dssp EEEECCTTC-CHHHHHHHHHHHHHHTCSCEEEE
T ss_pred EEEEeCCCc-cHHHHHHHHHHHHHcCCcEEEEe
No 215
>3BF0_A Protease 4; protease, bacterial, Hydrolase, Inner membrane, Membrane, Transmembrane, SER/LYS Protease; 2.55A {Escherichia coli}
Probab=22.83 E-value=6.1e+02 Score=24.11 Aligned_cols=57 Identities=12% Similarity=0.284 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred eeECCEEEeeeCC-------------------CCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCC----CHHHHHHHHHh
Q FD01543135_043 58 FKINGEVFDNIAP-------------------TTSNVRNIYDRVNQKVLSGQTNSVVINMADTSV----SIDELKQQFSD 114 (133)
Q Consensus 58 y~IeG~~fDcYaP-------------------~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~----~~~~l~~~l~~ 114 (133)
..|+|.+-+..++ ...+...+...|+.-..+...+-|||++++++. ...+|.+.|.+
T Consensus 36 i~l~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Ivl~i~~s~Gg~~~~~~el~~~i~~ 115 (593)
T 3BF0_A 36 LDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKE 115 (593)
T ss_dssp ECCEEEEESCC--------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHH
T ss_pred EECCCceeecCCccchhHHHHHHHhCCCCcccccCCHHHHHHHHHHHHhCCCccEEEEECCCCCCCChHHHHHHHHHHHH
No 216
>3KH7_A Thiol:disulfide interchange protein dsbE; TRX-like, thiol-disulfide exchange, Cell inner membrane, Cytochrome c-type biogenesis, Disulfide bond, Redox-active center, Transmembrane, oxidoreductase; 1.75A {Pseudomonas aeruginosa} SCOP: c.47.1.0, l.1.1.1
Probab=22.78 E-value=4.4e+02 Score=18.65 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHH----------------HHHhCCCCCCceEEEEc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQ----------------QFSDWPIDGLDKIIAID 127 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~----------------~l~~~Pi~gL~EvivI~ 127 (133)
++..+++....-+.....+.+-... ...-+.++.++..-....... ....+.+.++-.++++|
T Consensus 62 ll~f~~~~c~~c~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~lid 140 (176)
T 3KH7_A 62 LVNVWGTWCPSCRVEHPELTRLAEQ-GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLID 140 (176)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHT-TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHHHHHHHcCCCceEEeecCCCceeccccccCCCeEEEEC
Q ss_pred CCCCcC
Q FD01543135_043 128 KMGEPV 133 (133)
Q Consensus 128 k~G~ii 133 (133)
++|+|+
T Consensus 141 ~~g~v~ 146 (176)
T 3KH7_A 141 KQGIIR 146 (176)
T ss_dssp TTCBEE
T ss_pred CCCcEE
No 217
>1HF2_A SEPTUM SITE-DETERMINING PROTEIN MINC; CELL DIVISION PROTEIN, FTSZ, SEPTUM, BACTERIAL CELL DIVISION, BETA HELIX; 2.2A {THERMOTOGA MARITIMA} SCOP: b.80.3.1, c.102.1.1
Probab=22.69 E-value=5.9e+02 Score=20.94 Aligned_cols=47 Identities=4% Similarity=0.143 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred eeCCCCCCHhHHHHHHHHHhhcCCCC-----eEEEECCCCCCCHHHHHHHHH
Q FD01543135_043 67 NIAPTTSNVRNIYDRVNQKVLSGQTN-----SVVINMADTSVSIDELKQQFS 113 (133)
Q Consensus 67 cYaP~t~~~r~I~~~i~~KV~~~Qa~-----RiVlNL~ds~~~~~~l~~~l~ 113 (133)
.+-+...+...+.+.+.+|+...+.- +|+|++.+...+..++.+.+.
T Consensus 13 i~l~~~~~~~~~~~~l~~kl~~~~~ff~~~~~v~l~~~~~~~~~~~~~~l~~ 64 (210)
T 1HF2_A 13 LLIKDYQNLEEVLNAISARITQMGGFFAKGDRISLMIENHNKHSQDIPRIVS 64 (210)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHTGGGCCTTCEEEEEETTHHHHGGGHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhccccccCCCeEEEEecCCCCChhHHHHHHH
No 218
>PF04239.16 ; DUF421 ; YetF C-terminal domain
Probab=22.37 E-value=1.4e+02 Score=22.55 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred ECCCCCCCHHHHHHHHHhCCCCCCce--EEEEcCCCCc
Q FD01543135_043 97 NMADTSVSIDELKQQFSDWPIDGLDK--IIAIDKMGEP 132 (133)
Q Consensus 97 NL~ds~~~~~~l~~~l~~~Pi~gL~E--vivI~k~G~i 132 (133)
||....++.++|...|+...+..+++ ..+++.+|++
T Consensus 27 ~L~~~~~~~~~L~~~Lr~~g~~~i~dV~~a~le~~G~l 64 (134)
T I0JL56_HALH3/8 27 NLKKEKYTLDELLQLLRGKNIFELAEVEYAVLEADGKL 64 (134)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCCHHHHceeEEcCCCCE
No 219
>4L0W_A Thioredoxin peroxidase 1; OXIDOREDUCTASE, PEROXIREDOXIN, DISULFIDE, ANTIOXIDANT; 2.29A {Plasmodium yoelii yoelii} SCOP: c.47.1.0, l.1.1.1
Probab=22.34 E-value=4.8e+02 Score=18.88 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCC---------------------CCCCHHHHHHHHHhCCC----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMAD---------------------TSVSIDELKQQFSDWPI---- 117 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~d---------------------s~~~~~~l~~~l~~~Pi---- 117 (133)
.| ....+.....-..+..+.++.......-+.+..+. +++-.+.-......+.+
T Consensus 54 f~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 133 (208)
T 4L0W_A 54 FYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE 133 (208)
T ss_dssp ECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCchHHHHHhhhcchhhCCCCcceeeEecchhHHHHHhcCEeecC
Q ss_pred -CCCceEEEEcCCCCcC
Q FD01543135_043 118 -DGLDKIIAIDKMGEPV 133 (133)
Q Consensus 118 -~gL~EvivI~k~G~ii 133 (133)
.++-.+++||++|+|+
T Consensus 134 ~~~~P~~~lid~~g~i~ 150 (208)
T 4L0W_A 134 SVALRAFVLIDKQGVVQ 150 (208)
T ss_dssp TEECCEEEEECTTSBEE
T ss_pred cccccEEEEECCCCeEE
No 220
>3RAZ_A Thioredoxin-related protein; Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, thioredoxin-related; HET: MSE; 2.0A {Neisseria meningitidis serogroup B}
Probab=22.28 E-value=4e+02 Score=17.94 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCC--eEEEECCCCCCCHHHH------------------HHHHHhCC--CCCCc
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTN--SVVINMADTSVSIDEL------------------KQQFSDWP--IDGLD 121 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~--RiVlNL~ds~~~~~~l------------------~~~l~~~P--i~gL~ 121 (133)
++.+|++....-+.....+..-....... +++.-..+..-+.... ......+. +.++-
T Consensus 28 ll~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 107 (151)
T 3RAZ_A 28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLP 107 (151)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCSS
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCChhHHHHHHHhCCCCCccccccccccchhHHHhCCCCCccC
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
.++++|++|+++
T Consensus 108 ~~~lid~~g~~~ 119 (151)
T 3RAZ_A 108 FTVVEAPKCGYR 119 (151)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEcCCCCeE
No 221
>3DRN_B Peroxiredoxin, bacterioferritin comigratory protein homolog; Peroxiredoxin, Bacterioferritin comigratory protein, OXIDOREDUCTASE; HET: CIT, GOL; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=22.25 E-value=4.2e+02 Score=18.16 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EE-eeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCC---------------CCce-----
Q FD01543135_043 64 VF-DNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPID---------------GLDK----- 122 (133)
Q Consensus 64 ~f-DcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~---------------gL~E----- 122 (133)
.| ....+.....-..+..+.++.......-+.++.+ +.+.+.+.+...++. ++..
T Consensus 36 ~~~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (161)
T 3DRN_B 36 FYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD----DINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA 111 (161)
T ss_dssp ECSCTTSHHHHHHHHHHHHTHHHHGGGCEEEEEEESC----CHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred EecCCCCCcCHHHHHHHHHhHHHHHhCCeEEEEEeCC----CHHHHHHHHHHhCCCcEEEeCCCChHHHHhCCCCCcccc
Q ss_pred --EEEEcCCCCcC
Q FD01543135_043 123 --IIAIDKMGEPV 133 (133)
Q Consensus 123 --vivI~k~G~ii 133 (133)
+++||++|+|+
T Consensus 112 P~~~lid~~g~i~ 124 (161)
T 3DRN_B 112 RITFVIDKKGIIR 124 (161)
T ss_dssp CEEEEECTTSBEE
T ss_pred cEEEEECCCCeEE
No 222
>2IBO_D Hypothetical protein SP2199; alpha-beta protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; HET: MSE; 2.8A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=21.78 E-value=4.6e+02 Score=18.95 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHHHCCCceEeCCCCCCCCCCCeeECCEEEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEEC
Q FD01543135_043 31 NESAIILSQRGYNVEQNPSVPGIKNPDFKINGEVFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINM 98 (133)
Q Consensus 31 NEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG~~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL 98 (133)
.++-+.|.+.|++++..|-.. .|+| ..+.+-++...+.+++.+. +.|+++++
T Consensus 23 ~~~i~~l~~~gl~~~~~~~sT-------~veG--------~~~~v~~~l~~~~~~~~~~-~~rv~~~i 74 (104)
T 2IBO_D 23 DQVIAYLQTQEVTMVVTPFET-------VLEG--------EFDELMRILKEALEVAGQE-ADNVFANV 74 (104)
T ss_dssp HHHHHHHHHSSSEEEECSSCE-------EEEE--------EHHHHHHHHHHHHHHHHTS-CSEEEEEE
T ss_pred HHHHHHHHhCCCeEEEcCCce-------EEEe--------CHHHHHHHHHHHHHHHHHh-CCEEEEEE
No 223
>3ZH9_B DELTA; HYDROLASE, REPLICATION; HET: SO4, GOL; 2.1A {BACILLUS SUBTILIS}
Probab=21.73 E-value=4.9e+02 Score=21.35 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred eeCCCCCCHhHHHHHHHHHhhcCCCCeE-EEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCC
Q FD01543135_043 67 NIAPTTSNVRNIYDRVNQKVLSGQTNSV-VINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKM 129 (133)
Q Consensus 67 cYaP~t~~~r~I~~~i~~KV~~~Qa~Ri-VlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~ 129 (133)
.|.|...-...+...+.+++...+...+ +..++....+++++...+...|+-+=+.|++| ++
T Consensus 20 l~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lf~~~kiiii-~~ 82 (347)
T 3ZH9_B 20 LYGKETYLLQETVSRIRQTVVDQETKDFNLSVFDLEEDPLDQAIADAETFPFMGERRLVIV-KN 82 (347)
T ss_dssp EESSCHHHHHHHHHHHHHHHCCGGGHHHHEEEEETTTSCHHHHHHHHTSCCSSSSCEEEEE-EC
T ss_pred EEcCcHHHHHHHHHHHHHHhcCHhhccCCeEEEeCCCCCHHHHHHHHhcCcccCCceEEEE-eC
No 224
>3QOU_A protein ybbN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, PROTEIN BINDING; HET: MLY; 1.8A {Escherichia coli}
Probab=21.57 E-value=6e+02 Score=19.77 Aligned_cols=64 Identities=8% Similarity=0.151 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++|||....-+.+...+.+-+.+.+..=.++-++ .++-......+-+.++-.++++ .+|.++
T Consensus 30 ~~~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~vd-----~~~~~~~~~~~~~~~~p~~~~~-~~g~~~ 93 (287)
T 3QOU_A 30 LFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLD-----CDAEQMIAAQFGLRAIPTVYLF-QNGQPV 93 (287)
T ss_dssp EEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEE-----TTTCHHHHHTTTCCSSSEEEEE-ETTEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEec-----CCccHHHHHHcCCCcCCEEEEE-ECCEEe
No 225
>3LKX_A Transcription factor BTF3; beta-barrel, CHAPERONE; 2.5A {Homo sapiens}
Probab=21.56 E-value=1.2e+02 Score=20.25 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCCCCceEEEEcCCCCcC
Q FD01543135_043 116 PIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 116 Pi~gL~EvivI~k~G~ii 133 (133)
+++|++||-++..+|+++
T Consensus 3 ~i~~i~evn~~~~dg~v~ 20 (66)
T 3LKX_A 3 NISGIEEVNMFTNQGTVI 20 (66)
T ss_dssp ECCCEEEEEEEETTSEEE
T ss_pred CCCCeeEEEEEecCCeEE
No 226
>4Y68_D Putative nisin-resistance protein; lipoprotein, lantibiotic, peptidase, hydrolase; HET: MES; 2.21A {Streptococcus agalactiae 515}
Probab=21.47 E-value=7.5e+02 Score=20.79 Aligned_cols=67 Identities=6% Similarity=0.040 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EeeeCCCCCC-HhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCC
Q FD01543135_043 65 FDNIAPTTSN-VRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGE 131 (133)
Q Consensus 65 fDcYaP~t~~-~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ 131 (133)
|.-+++.... ....+..+.+.+.+...+.+||+|.+|.+.-......|-.+-++.=.......+.+.
T Consensus 123 i~~f~~~~~~~~~~~~~~~~~~l~~~~~~~lIiDlR~N~GG~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (312)
T 4Y68_D 123 IPSISKLDKRSISHYSGKLQNILMEKSYKGLILDLSNNTGGNMIPMIGGLASILPNDTLFHYTDKYGN 190 (312)
T ss_dssp CCCBCCCCHHHHHHHHHHHHHHHHHSCCSEEEEECTTCCEEEHHHHHHHTGGGSCSSEEEEEECTTCC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCChHHHHHHHHHHCCCceEEEEEcCCCC
No 227
>2J80_B SENSOR KINASE CITA; TRANSFERASE, SIGNAL TRANSDUCTION, TRANSMEMBRANE, PHOSPHORYLATION, TWO-COMPONENT REGULATORY SYSTEM; HET: FLC, MSE, GOL; 1.6A {KLEBSIELLA PNEUMONIAE} SCOP: d.110.6.1
Probab=21.43 E-value=3e+02 Score=17.18 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+..+...+.. ..++..+.++|.+|.++
T Consensus 43 ~~~~l~~~~~--~~~~~~~~i~~~~g~~~ 69 (135)
T 2J80_B 43 IKALIDPMRS--FSDATYITVGDASGQRL 69 (135)
T ss_dssp HHHHHHHHHH--TCCCSEEEEEETTSBEE
T ss_pred HHHHHHHHHh--cCCCcEEEEEcCCCcEE
No 228
>5YKJ_A Peroxiredoxin PRX1, mitochondrial; Saccharomyces cerevisiae, 1-Cys Peroxiredoxin, Thioredoxin, glutathione, TRANSFERASE; HET: GOL, CSO; 1.53A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} SCOP: c.47.1.0, l.1.1.1
Probab=21.41 E-value=4.3e+02 Score=19.55 Aligned_cols=69 Identities=6% Similarity=0.086 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHH---------------------HHHHhCCCC-----
Q FD01543135_043 65 FDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELK---------------------QQFSDWPID----- 118 (133)
Q Consensus 65 fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~---------------------~~l~~~Pi~----- 118 (133)
|..+.|.....-..+..+.++.......-+.+..+........+. .....+.+.
T Consensus 37 ~~~~c~~c~~~~~~l~~~~~~~~~~~v~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 116 (214)
T 5YKJ_A 37 PADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWIQDIKEIAKVKNVGFPIIGDTFRNVAFLYDMVDAEGF 116 (214)
T ss_dssp SCSSCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCSCEEECTTSHHHHHTTSCSCCSC
T ss_pred CCCCCCCcHHHHHHHHHhHHHHHhCCcEEEEEeCCCHHHHHHHHHHHHHHhCCCcccccEEeCcchHHHHHcCCcchhhh
Q ss_pred ---------CCceEEEEcCCCCcC
Q FD01543135_043 119 ---------GLDKIIAIDKMGEPV 133 (133)
Q Consensus 119 ---------gL~EvivI~k~G~ii 133 (133)
++-.+++||++|+|+
T Consensus 117 ~~~~~~~~~~~p~~~lid~~g~i~ 140 (214)
T 5YKJ_A 117 KNINDGSLKTVRSVFVIDPKKKIR 140 (214)
T ss_dssp CCCSSSTTTTCCEEEEECTTSBEE
T ss_pred ccCCCCCcccceEEEEECCCCeEE
No 229
>2YXD_A Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]; Alpha and beta protein (a/b) Class, Methyltransferase superfamily, Structural Genomics, NPPSFA, National Project on Protein Structural; HET: SO4, MES, MSE; 2.3A {Methanocaldococcus jannaschii} SCOP: c.66.1.0
Probab=21.18 E-value=1.8e+02 Score=22.21 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHHHHHCCCceEeCCCCCC------------CCCCCeeECCE
Q FD01543135_043 27 IWRENESAIILSQRGYNVEQNPSVPG------------IKNPDFKINGE 63 (133)
Q Consensus 27 ~~RENEsA~~LA~~GYdVeQnP~~~~------------~knPDy~IeG~ 63 (133)
......+...|.+.||.+++.+.... .+||++.+.++
T Consensus 134 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (183)
T 2YXD_A 134 LENAAKIINEFESRGYNVDAVNVFISYAKKIPSGHMFLAKNPITIIKAV 182 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEEeeccEecCCceeeccCCCEEEEEEe
No 230
>3APS_A DnaJ homolog subfamily C member 10; THIOREDOXIN FOLD, CXXC MOTIF, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE; 1.9A {Mus musculus} SCOP: c.47.1.0
Probab=21.13 E-value=3.8e+02 Score=17.18 Aligned_cols=62 Identities=6% Similarity=0.063 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.+..+.+........+..+.++. ..+..-+.++.+.+ ...+.++.+.++-.+++++.++.+.
T Consensus 28 f~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-------~~~~~~~~v~~~P~~~~~~~~~~~~ 89 (122)
T 3APS_A 28 FYAPWCGPCQNFAPEFELLARMI-KGKVRAGKVDCQAY-------PQTCQKAGIKAYPSVKLYQYERAKK 89 (122)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH-TTTCEEEEEETTTC-------HHHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred EeCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEecccC-------hHHHHHcCCCcCCEEEEEccchhcc
No 231
>7DGU_A de novo designed protein H4A1R; Designed protein, DE NOVO PROTEIN; 1.75A {Escherichia coli 'BL21-Gold(DE3)pLysS AG'}
Probab=21.11 E-value=2.4e+02 Score=21.53 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CHHHHHHHHHHH-HHHHHHHHCC
Q FD01543135_043 20 TEDNKRAIWREN-ESAIILSQRG 41 (133)
Q Consensus 20 ~~~~~r~~~REN-EsA~~LA~~G 41 (133)
+|+..|++-|.- |||.-||+.|
T Consensus 52 speeirallrkaieaakklaklg 74 (106)
T 7DGU_A 52 SPEEIRALLRKAIEAAKKLAKLG 74 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhh
No 232
>8IB8_Q Phosducin-like protein 3; chaperonin complex, CHAPERONE, cochaperone;{Homo sapiens}
Probab=20.99 E-value=4.7e+02 Score=21.61 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEeeeCCCC---CCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTT---SNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t---~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+...|++.. .....++..+..+... ..-+-++.+.+. .++++.++--++++ ++|+++
T Consensus 116 vv~f~~~~~~~C~~l~~~l~~la~~~~~--v~f~~i~~~~~~----------~~~~i~~~Ptllvy-~~G~~v 175 (239)
T 8IB8_Q 116 ILHLYKQGIPLCALINQHLSGLARKFPD--VKFIKAISTTCI----------PNYPDRNLPTIFVY-LEGDIK 175 (239)
T ss_dssp EEEEBCTTSHHHHHHHHHHHHHHHHCTT--SEEECCBHHHHS----------TTCCTTSCSEEEEE-ETTEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHCCC--CEEEEEEcCcch----------hhCCCCCCCEEEEE-ECCEEE
No 233
>PF03852.19 ; Vsr ; DNA mismatch endonuclease Vsr
Probab=20.96 E-value=4.2e+02 Score=17.66 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHCCCceEeCCCCCCCCCCCeeECC
Q FD01543135_043 30 ENESAIILSQRGYNVEQNPSVPGIKNPDFKING 62 (133)
Q Consensus 30 ENEsA~~LA~~GYdVeQnP~~~~~knPDy~IeG 62 (133)
|-.-+..|.+.|+..+.+-... ...||+.+.+
T Consensus 24 E~~~~~~L~~~g~~~~~~~~~~-~~~~D~~~~~ 55 (75)
T VSR_ECOLI/2-76 24 EKRLASLLTGQGLAFRVQDASL-PGRPDFVVDE 55 (75)
T ss_pred HHHHHHHHHHCCCEEEeeCCCC-CCCCCEEECC
No 234
>2JSY_A Probable thiol peroxidase; solution structure, Antioxidant, Oxidoreductase, Peroxidase; NMR {Bacillus subtilis} SCOP: c.47.1.0
Probab=20.93 E-value=4.5e+02 Score=18.05 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEeeeCCC-CCCHhHHHHHHHHHhhc-CCCCeEEEECCC---------------CCCCHHH-HHHHHHhCCCCC------
Q FD01543135_043 64 VFDNIAPT-TSNVRNIYDRVNQKVLS-GQTNSVVINMAD---------------TSVSIDE-LKQQFSDWPIDG------ 119 (133)
Q Consensus 64 ~fDcYaP~-t~~~r~I~~~i~~KV~~-~Qa~RiVlNL~d---------------s~~~~~~-l~~~l~~~Pi~g------ 119 (133)
+.-.+++. ...-......+.+-.++ ....-|.+..++ +++-.+. -......+.+.+
T Consensus 48 ll~f~~~~~~~~c~~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (167)
T 2JSY_A 48 IISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLL 127 (167)
T ss_dssp EEEECSCSTTSHCCCCCHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSB
T ss_pred EEEeecCCCCcccHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCCeEEeeCcccchHHHHhCCcHHhhcce
Q ss_pred CceEEEEcCCCCcC
Q FD01543135_043 120 LDKIIAIDKMGEPV 133 (133)
Q Consensus 120 L~EvivI~k~G~ii 133 (133)
.-.+++||++|+|+
T Consensus 128 ~p~~~lid~~g~i~ 141 (167)
T 2JSY_A 128 ARSVFVLDENGKVV 141 (167)
T ss_dssp CCEEEEECTTSCEE
T ss_pred ecEEEEECCCCeEE
No 235
>PF20029.3 ; DUF6436 ; Domain of unknown function (DUF6436)
Probab=20.79 E-value=1.2e+02 Score=18.87 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred eEEEEcCCCCcC
Q FD01543135_043 122 KIIAIDKMGEPV 133 (133)
Q Consensus 122 EvivI~k~G~ii 133 (133)
|++|||++|+++
T Consensus 5 e~~vid~~~~l~ 16 (59)
T Q88CL8_PSEPK/1 5 AVAIWDRQGRLA 16 (59)
T ss_pred eEEEECCCCcEE
No 236
>3QZ6_A HpcH/HpaI aldolase; structural genomics, PSI-Biology, protein structure initiative, midwest center for structural genomics, MCSG, cytoplasmic, LYASE; HET: MSE; 1.999A {Desulfitobacterium hafniense} SCOP: c.1.12.0, l.1.1.1
Probab=20.61 E-value=7.2e+02 Score=20.22 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCEEEeeeC-CCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHH
Q FD01543135_043 61 NGEVFDNIA-PTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFS 113 (133)
Q Consensus 61 eG~~fDcYa-P~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~ 113 (133)
.+..|..|. |..+. .+.++.....++-|++++.++..+.+.+...+.
T Consensus 13 ~~~~~g~~~~~~~~~------~~~~~~~~~g~D~v~~D~E~~~~~~~~~~~~~~ 60 (261)
T 3QZ6_A 13 GKSVVGTMLNLVYNP------DIVRIYAEAGLDYFIVDCEHAAYTFREINHLVS 60 (261)
T ss_dssp TCCEEEEEESSCCCT------THHHHHHHTTCSEEEEESSSSCCCHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCh------HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
No 237
>8T4C_B Thioredoxin oxidoreductase; Fet system, iron uptake, disulfide reductase, OXIDOREDUCTASE; 1.5A {Campylobacter jejuni subsp. jejuni}
Probab=20.59 E-value=4.2e+02 Score=17.51 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCC-------------------CCCceEE
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPI-------------------DGLDKII 124 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi-------------------~gL~Evi 124 (133)
++..+++....-+.....+.+-......+ +.+-.-....+.+.+.+.+..+.+ .++-.++
T Consensus 41 l~~f~~~~c~~c~~~~~~l~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 119 (147)
T 8T4C_B 41 VLVFFQNGCPSCLKELPSLDEFIQNHPNK-ISVYAINSIDNANVVKVLAEQFDFKNVKVLKDDLKITNDRYAVFATPTTI 119 (147)
T ss_dssp EEEEECTTCGGGTTHHHHHHHHHHHSTTT-EEEEEEESSSCHHHHHHHHHHHCCSSSEEEEESTTHHHHHTTCCSSCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHhCCCc-EEEEEEEeCCChHHHHHHHHhcCCCccEEEecccchhhHhccceecCEEE
Q ss_pred EEcCCCCcC
Q FD01543135_043 125 AIDKMGEPV 133 (133)
Q Consensus 125 vI~k~G~ii 133 (133)
++ ++|+|+
T Consensus 120 ~~-~~g~i~ 127 (147)
T 8T4C_B 120 II-KDGMIK 127 (147)
T ss_dssp EE-ETTEEE
T ss_pred EE-eCCEEE
No 238
>PF11964.12 ; SpoIIAA-like ; SpoIIAA-like
Probab=20.55 E-value=3.5e+02 Score=16.57 Aligned_cols=63 Identities=2% Similarity=0.042 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEeeeCCCC-CCHhHHHHHHHHHhhcCCCCeEEEECCCCCC-CHHHHHHHHH--hCCCCCCceEEEE
Q FD01543135_043 64 VFDNIAPTT-SNVRNIYDRVNQKVLSGQTNSVVINMADTSV-SIDELKQQFS--DWPIDGLDKIIAI 126 (133)
Q Consensus 64 ~fDcYaP~t-~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~-~~~~l~~~l~--~~Pi~gL~EvivI 126 (133)
++.+...-+ ......+..+.+-+..++...+++++.+... +.+++...+. ..-..++..+.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v 69 (106)
T K9XV53_STAC7/1 3 GIKVDGKITKNDFTELVHKLETAINNYGQIRILVEFIQMQGLEASAFWEDLRFSLTHFKDISRYAIV 69 (106)
T ss_pred EEEEecEecHHHHHHHHHHHHHHHHhcCcEEEEEEEecCCCccchHHHHHHhHHHHhhhcceeEEEE
No 239
>8BIY_A Histidine kinase; signal transduction, Geobacillus thermodenitrificans, sensor histidine kinase, CitA, sensor domain, extracytoplasmic PAS domain, R93A mutation, two-component; HET: SO4, CXS, GOL; 1.61A {Geobacillus thermodenitrificans}
Probab=20.40 E-value=2.5e+02 Score=17.36 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred CHHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 104 SIDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 104 ~~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
.+..+...+... +++..+.++|.+|.++
T Consensus 37 ~~~~~l~~~~~~--~~~~~~~i~~~~g~~~ 64 (131)
T 8BIY_A 37 RLQPFAERIRQK--TGAEYVVIGNRQGIAY 64 (131)
T ss_dssp HHHHHHHHHHHH--HTCSEEEEECTTCBEE
T ss_pred hcHHHHHHHHhh--cCCCEEEEEcCCCcEE
No 240
>PF11009.12 ; BrxC ; Monothiol bacilliredoxin BrxC
Probab=20.37 E-value=3.5e+02 Score=16.52 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCCCCCHHHHHHHHHhCCCCC-CceEEEEcCCCCcC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADTSVSIDELKQQFSDWPIDG-LDKIIAIDKMGEPV 133 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds~~~~~~l~~~l~~~Pi~g-L~EvivI~k~G~ii 133 (133)
++..|++....-+.....+..=..+.... +.+..-+....-.........+.+.+ +-.++++ ++|+++
T Consensus 22 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~g~~~ 90 (103)
T E4RVU0_LEAB4/4 22 GLFKHSTRCSISATAKDRLERNWSKIDGK-ISPYYLDLIAHRDISNAIQDTFGITHESPQFILL-KNGKAV 90 (103)
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhcCCC-ceeEEEEecccccccHHHHHHHCCCCCCCEEEEE-ECCEEE
No 241
>6HJM_H MglB; Small GTPase, guanyl-nucleotide exchange factor (GEF), CYTOSOLIC PROTEIN; 2.39A {Myxococcus xanthus} SCOP: d.110.7.0
Probab=20.36 E-value=2.3e+02 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 105 IDELKQQFSDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 105 ~~~l~~~l~~~Pi~gL~EvivI~k~G~ii 133 (133)
+.++...|.+ ++|++-+++++++|.++
T Consensus 48 l~~~L~~l~~--~~gv~~~~l~~~dG~~i 74 (192)
T 6HJM_H 48 INAVCDRLTK--DANAKVVFLVDKNGQLI 74 (192)
T ss_dssp HHHHHHHHHH--HTTCSEEEEEETTSCEE
T ss_pred HHHHHHHHHH--hcCCeEEEEEcCCCcEE
No 242
>6MAB_A Sigma regulatory family protein-PP2C phosphatase; RsbU, periplasmic sensor domain, Chlamydia trachomatis, TCA cycle intermediates, SIGNALING PROTEIN; 1.7A {Chlamydia trachomatis serovar L2}
Probab=20.27 E-value=2.3e+02 Score=20.90 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred CCHHHHHHHH-HhCCCCCCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQF-SDWPIDGLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l-~~~Pi~gL~EvivI~k~G~ii 133 (133)
++++.|...+ ....+ .-..+.++|++|.++
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~l~d~~g~ii 180 (272)
T 6MAB_A 150 SDTNYLLNGLLAAKDP-LSVKTAILSKNGIIL 180 (272)
T ss_dssp EECHHHHHHHHCCCC---CCEEEEEETTSBEE
T ss_pred ccHHHHHHHhhcCCCC-CCceEEEEcCCCeEE
No 243
>7PRR_A Probable chemotaxis transducer; Ligand binding domain, Pseudomonas aeruginosa, chemotactic transducer, SIGNALING PROTEIN; HET: ACH, PEG, PGE; 1.8A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}
Probab=20.11 E-value=1.9e+02 Score=21.76 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCHHHHHHHHHhCCCC---CCceEEEEcCCCCcC
Q FD01543135_043 103 VSIDELKQQFSDWPID---GLDKIIAIDKMGEPV 133 (133)
Q Consensus 103 ~~~~~l~~~l~~~Pi~---gL~EvivI~k~G~ii 133 (133)
++++.|.+.+...... .-..+.++|.+|.++
T Consensus 225 i~~~~l~~~~~~~~~~~~~~~~~~~l~d~~g~ii 258 (350)
T 7PRR_A 225 LSLAFIQDLLKRADQQLYDGAGEMALIASNGRLV 258 (350)
T ss_dssp EEHHHHHHHHHHHHHTSGGGTSEEEEECTTSBEE
T ss_pred EeHHHHHHHHHHcchhccCCCceEEEEecCCEEE
No 244
>4EVM_A Thioredoxin family protein; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; 1.506A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=20.09 E-value=3.8e+02 Score=16.90 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred EEeeeCCCCCCHhHHHHHHHHHhhcCCCCeEEEECCCC----CCCHHHHHH-------------------HHHhCCCCCC
Q FD01543135_043 64 VFDNIAPTTSNVRNIYDRVNQKVLSGQTNSVVINMADT----SVSIDELKQ-------------------QFSDWPIDGL 120 (133)
Q Consensus 64 ~fDcYaP~t~~~r~I~~~i~~KV~~~Qa~RiVlNL~ds----~~~~~~l~~-------------------~l~~~Pi~gL 120 (133)
+...|++....-......+.+-........+++-.-.. ..+...+.. ....+.+.+.
T Consensus 26 ~l~f~~~~c~~c~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (138)
T 4EVM_A 26 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSY 105 (138)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSS
T ss_pred EEEEECCCCHHHHHhCcchHHHHHHhCCCcEEEEEECCccCCcccchhHhHHhhcCCCCCCcEEECCCCcchhhhCCCCC
Q ss_pred ceEEEEcCCCCcC
Q FD01543135_043 121 DKIIAIDKMGEPV 133 (133)
Q Consensus 121 ~EvivI~k~G~ii 133 (133)
-.++++|++|+|+
T Consensus 106 P~~~lid~~g~i~ 118 (138)
T 4EVM_A 106 PTQAFIDKEGKLV 118 (138)
T ss_dssp SEEEEECTTCCEE
T ss_pred CeEEEECCCCCEE
No 245
>PF01514.21 ; YscJ_FliF ; Secretory protein of YscJ/FliF family
Probab=20.01 E-value=4.8e+02 Score=20.51 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred EEEECCCCCCCHHHHHHHHH--hCCCCCCc--eEEEEcCCCCcC
Q FD01543135_043 94 VVINMADTSVSIDELKQQFS--DWPIDGLD--KIIAIDKMGEPV 133 (133)
Q Consensus 94 iVlNL~ds~~~~~~l~~~l~--~~Pi~gL~--EvivI~k~G~ii 133 (133)
|+|.+.+ .++.+++...-. ..-++||+ .|.|+|..|.++
T Consensus 131 V~v~~~~-~l~~~~v~~I~~lVa~sv~gL~~~nV~I~D~~g~~l 173 (175)
T F2LWX9_HIPMA/4 131 IVLDLYK-PLTRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLL 173 (175)
T ss_pred EEEEeCC-CCCHHHHHHHHHHHHhhCCCCCHHHeEEEcCCCCcc