Query FD01848346_03751 RHS repeat-associated core domain-containing protein
Match_columns 105
No_of_seqs 103 out of 228
Neff 5.64072
Searched_HMMs 86581
Date Tue Feb 27 21:09:44 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/3377218.hhr -oa3m ../results/3377218.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 5T87_G CdiA toxin; Contact-dep 92.3 1.7 2E-05 26.6 6.1 61 35-99 1-63 (76)
2 1MBY_A serine/threonine kinase 56.5 85 0.00098 20.5 5.2 43 53-101 30-72 (88)
3 PF16225.9 ; DUF4884 ; Domain o 49.8 46 0.00053 21.1 2.8 25 55-79 6-31 (48)
4 PF11603.12 ; Sir1 ; Sir1, ORC- 47.5 39 0.00044 24.2 2.6 33 32-67 57-89 (121)
5 5LHX_A Serine/threonine-protei 46.5 1.4E+02 0.0016 20.1 5.2 43 53-101 33-77 (93)
6 8HL2_L47A 50S ribosomal protei 39.9 1.5E+02 0.0017 20.7 4.3 41 59-100 24-74 (80)
7 PF11743.12 ; DUF3301 ; Protein 33.6 43 0.0005 23.0 1.1 39 42-82 35-78 (93)
8 2L93_A DNA-binding protein H-N 27.4 2.1E+02 0.0025 17.7 3.3 27 67-99 7-33 (55)
9 PF06174.15 ; DUF987 ; Protein 25.8 1.2E+02 0.0014 20.4 2.0 25 68-92 20-47 (65)
10 PF19855.3 ; DUF6330 ; Family o 20.6 4.1E+02 0.0047 18.2 3.7 28 57-85 10-37 (69)
11 5AJ4_Ad MITORIBOSOMAL PROTEIN 20.5 1.5E+02 0.0018 22.7 2.1 32 36-68 142-173 (177)
No 1
>5T87_G CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin, immunity protein, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
Probab=92.30 E-value=1.7 Score=26.56 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCCCCCHHHHHHhcEeCC-CCCeeEEEC-CCCCEEEEeeCCCCCeeeccccCCCCCCCCCHHHHHHh
Q FD01848346_037 35 SILPSNAEELYKHAIPDA-EGKHWYAMD-KDGVIHRYGNSNDGKAHWNGDTSQNRGVPVPKEVQRRF 99 (105)
Q Consensus 35 ~~eP~na~~lf~~Sv~~~-~~~~r~a~d-~~G~ihRF~~~n~G~~HWsGst~~~~~~~vp~~i~k~l 99 (105)
+..|.+.+..++.++... ....|+++| ..|.+..|.....+.+|+.-.+-. .+..+.+..|
T Consensus 1 s~~p~~~~~al~~~~~~~~~~~~r~gvd~~~g~~~~~d~~~~~~~~g~vr~~~----~~~~~~~~~l 63 (76)
T 5T87_G 1 SRGPSNGQSVLENSVQVKETSPRRVSVDPQTGEFVVFDRTLGDVYHGHVRAWK----DLTSDMQNAL 63 (76)
T ss_dssp -CCCTTHHHHHHTCEEEETTEEEEEEECTTTCCEEEEEEEETTEEEEEEECGG----GSCHHHHHHH
T ss_pred CCCCCChHHHHhccccCCCCCCccEEEcCCCCeEEEeeCCCCCeEEeccccHH----hCCHHHHHHH
No 2
>1MBY_A serine/threonine kinase; POLO DOMAIN, STRAND EXCHANGE, TRANSFERASE; 2.0A {Mus musculus} SCOP: d.223.1.1
Probab=56.45 E-value=85 Score=20.55 Aligned_cols=43 Identities=7% Similarity=0.220 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCCeeEEECCCCCEEEEeeCCCCCeeeccccCCCCCCCCCHHHHHHhhh
Q FD01848346_037 53 EGKHWYAMDKDGVIHRYGNSNDGKAHWNGDTSQNRGVPVPKEVQRRFEQ 101 (105)
Q Consensus 53 ~~~~r~a~d~~G~ihRF~~~n~G~~HWsGst~~~~~~~vp~~i~k~lg~ 101 (105)
..+.+..++.++...+|...+....+|+-.. .+|.++++.|..
T Consensus 30 ~Dgs~l~~~~~~~~v~y~~~~g~~~~f~~~~------~lP~~v~~kl~~ 72 (88)
T 1MBY_A 30 NDGSQLVMQAGVSSISYTSPDGQTTRYGENE------KLPEYIKQKLQL 72 (88)
T ss_dssp TTSCEEEEEEEEEEEEEECTTSCEEEEETTS------CCCHHHHHHHTT
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEeCCC------cCCHHHHHHHHH
No 3
>PF16225.9 ; DUF4884 ; Domain of unknown function (DUF4884)
Probab=49.77 E-value=46 Score=21.07 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred CeeEEECCCC-CEEEEeeCCCCCeee
Q FD01848346_037 55 KHWYAMDKDG-VIHRYGNSNDGKAHW 79 (105)
Q Consensus 55 ~~r~a~d~~G-~ihRF~~~n~G~~HW 79 (105)
...+-..-+| .+|||.++..|.++.
T Consensus 6 ~Ve~LFe~DGCkVYRF~D~~~g~~vY 31 (48)
T R6FE76_9BACE/3 6 RVSYLFEHDGCRVYRFYDSWSGSYVY 31 (48)
T ss_pred eeeEEEEECCEEEEEEEeCCCCeEEE
No 4
>PF11603.12 ; Sir1 ; Sir1, ORC-binding domain
Probab=47.54 E-value=39 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCCCCCCCHHHHHHhcEeCCCCCeeEEECCCCCEE
Q FD01848346_037 32 SQTSILPSNAEELYKHAIPDAEGKHWYAMDKDGVIH 67 (105)
Q Consensus 32 ~~~~~eP~na~~lf~~Sv~~~~~~~r~a~d~~G~ih 67 (105)
|...+.|.++.+||+.+=... .+|..+++|.++
T Consensus 57 ~~~~lip~~S~~LF~~v~t~~---~~F~~~~~G~~~ 89 (121)
T G0VIY8_NAUCC/5 57 PNTDLVPCSSKELFAQSHLEV---KKFVRTDEGFKL 89 (121)
T ss_pred CCCceeecCCHHHHHhCccEE---EEEEECCCccEE
No 5
>5LHX_A Serine/threonine-protein kinase PLK4; Polo box domain, Centriole, transferase, structural protein; 1.53A {Drosophila melanogaster} SCOP: d.223.1.0
Probab=46.51 E-value=1.4e+02 Score=20.08 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCeeEEECCCCC--EEEEeeCCCCCeeeccccCCCCCCCCCHHHHHHhhh
Q FD01848346_037 53 EGKHWYAMDKDGV--IHRYGNSNDGKAHWNGDTSQNRGVPVPKEVQRRFEQ 101 (105)
Q Consensus 53 ~~~~r~a~d~~G~--ihRF~~~n~G~~HWsGst~~~~~~~vp~~i~k~lg~ 101 (105)
..+.++.++.+.. ..+|...+....+|+-.. .+|..|++.|..
T Consensus 33 ~DGs~l~~~~~~~~~~i~y~~~~g~~~~y~~~~------~lP~~v~~kL~~ 77 (93)
T 5LHX_A 33 YDGSVVSVIPSMQGGGITYTQPNGTSTHFGKGD------DLPFPVRDRVGQ 77 (93)
T ss_dssp TTSCEEEECCGGGTCCEEEECTTSCEEEECTTC------CCCTTHHHHHTT
T ss_pred CCCCEEEEecCCCcCeEEEECCCCCEEEeeCCC------CCCHHHHHHHhh
No 6
>8HL2_L47A 50S ribosomal protein L47A; Sulfolobus acidocaldarius ribosome small subunit, RIBOSOME; HET: GNP, UNK;{Sulfolobus acidocaldarius DSM 639}
Probab=39.90 E-value=1.5e+02 Score=20.71 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred EECCCC-CEEEEee-----CCCCCeeeccccCCCCCC----CCCHHHHHHhh
Q FD01848346_037 59 AMDKDG-VIHRYGN-----SNDGKAHWNGDTSQNRGV----PVPKEVQRRFE 100 (105)
Q Consensus 59 a~d~~G-~ihRF~~-----~n~G~~HWsGst~~~~~~----~vp~~i~k~lg 100 (105)
+++++| .++-|+. .++|.- |+=.+.+.... .+|++||+.|.
T Consensus 24 ~r~e~Ge~~vv~~~~~~~~~~~gee-W~~d~~~akeid~~~~Lp~dirk~Ls 74 (80)
T 8HL2_L47A 24 ARNEKGEKIIIFQSLTSAKLLNNEE-WKENTTDAKNVEKREDLPQDVRKITG 74 (80)
T ss_pred EeCCCCCEEEEEEEeeEEecCCCcc-cCCCcccceeccchhhCCHHHHHHHH
No 7
>PF11743.12 ; DUF3301 ; Protein of unknown function (DUF3301)
Probab=33.60 E-value=43 Score=23.03 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred HHHHHhcEeCCCCCeeEEECCCC-----CEEEEeeCCCCCeeeccc
Q FD01848346_037 42 EELYKHAIPDAEGKHWYAMDKDG-----VIHRYGNSNDGKAHWNGD 82 (105)
Q Consensus 42 ~~lf~~Sv~~~~~~~r~a~d~~G-----~ihRF~~~n~G~~HWsGs 82 (105)
.+|.+.+|... +.++.++.+| ..|+|.-+.+|.-.+.|.
T Consensus 35 lQlLD~tv~l~--~~~~~r~~~g~~~~~R~Y~FEFS~~G~~Ry~G~ 78 (93)
T C5BMU7_TERTT/8 35 VNLLDQSIVLR--RISLRPSASSLFAVRRVYSFEFATLGDERYPGT 78 (93)
T ss_pred CEEeeheEEee--eeeeccCCCCCeEEEEEEEEEEcCCCCceEEEE
No 8
>2L93_A DNA-binding protein H-NS; H-NS, AT hook, DNA Binding Protein; NMR {Salmonella typhimurium} SCOP: a.155.1.1, l.1.1.1
Probab=27.42 E-value=2.1e+02 Score=17.66 Aligned_cols=27 Identities=19% Similarity=0.505 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred EEEeeCCCCCeeeccccCCCCCCCCCHHHHHHh
Q FD01848346_037 67 HRYGNSNDGKAHWNGDTSQNRGVPVPKEVQRRF 99 (105)
Q Consensus 67 hRF~~~n~G~~HWsGst~~~~~~~vp~~i~k~l 99 (105)
|||.+..+...-|+|.- ..|..+++.+
T Consensus 7 Yry~~p~~~~~tWsGrG------r~P~wl~~~~ 33 (55)
T 2L93_A 7 YSYVDENGETKTWTGQG------RTPAVIKKAM 33 (55)
T ss_dssp EEEESSSSEEEEECSCS------SCCHHHHHHH
T ss_pred eEEECCCCCeeeeeCCC------CCCHHHHHHH
No 9
>PF06174.15 ; DUF987 ; Protein of unknown function (DUF987)
Probab=25.79 E-value=1.2e+02 Score=20.38 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred EEeeCCCCCeeeccccCCCCCC---CCC
Q FD01848346_037 68 RYGNSNDGKAHWNGDTSQNRGV---PVP 92 (105)
Q Consensus 68 RF~~~n~G~~HWsGst~~~~~~---~vp 92 (105)
|++.--+|.|.|.||...-... +||
T Consensus 20 rlf~fctGKY~WhGS~~~YtGrevqdi~ 47 (65)
T YPJJ_ECOLI/1-6 20 RIFRYCTGKYQWHGSVCHYTGRDVPDIT 47 (65)
T ss_pred eecccCCCcceecCccccccCceecCCC
No 10
>PF19855.3 ; DUF6330 ; Family of unknown function (DUF6330)
Probab=20.56 E-value=4.1e+02 Score=18.21 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=0.0 Template_Neff=2.000
Q ss_pred eEEECCCCCEEEEeeCCCCCeeeccccCC
Q FD01848346_037 57 WYAMDKDGVIHRYGNSNDGKAHWNGDTSQ 85 (105)
Q Consensus 57 r~a~d~~G~ihRF~~~n~G~~HWsGst~~ 85 (105)
+.|.+.+|.-++..-.. |-|-||-|.+.
T Consensus 10 rVAc~~dG~R~iitf~r-gaYwWS~sega 37 (69)
T A0A166RVU3_9RH 10 RVACFNDGRRKIITFKR-GAYWWSAAEGA 37 (69)
T ss_pred EEEEcCCCceEEEEEcC-ceEEeeccCCc
No 11
>5AJ4_Ad MITORIBOSOMAL PROTEIN MS26, MRPS26; RIBOSOME, TRANSLATION, MITOCHONDRIA, MAMMALIAN 55S MITORIBOSOME, MAMMALIAN 55S MITOCHONDRIAL RIBOSOME, 28S SMALL SUBUNIT, 39S LARGE SUBUNIT; HET: Y5P, GDP, P5P, MG; 3.8A {SUS SCROFA}
Probab=20.48 E-value=1.5e+02 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CCCCCHHHHHHhcEeCCCCCeeEEECCCCCEEE
Q FD01848346_037 36 ILPSNAEELYKHAIPDAEGKHWYAMDKDGVIHR 68 (105)
Q Consensus 36 ~eP~na~~lf~~Sv~~~~~~~r~a~d~~G~ihR 68 (105)
|-+.|-.+..++|+... -..-||+|.+|.+|+
T Consensus 142 IT~ENLDe~Ie~aL~~~-vdYNfAID~~G~i~~ 173 (177)
T 5AJ4_Ad 142 ITRENLEARVEEALDSP-KSYNWAITREGLVVR 173 (177)
T ss_pred CChhhHHHHHHHHHhCC-CCCCceecCCCceec