Query FD01847924_02385 RHS repeat family protein
Match_columns 109
No_of_seqs 34 out of 36
Neff 3.85217
Searched_HMMs 86581
Date Tue Feb 27 21:08:29 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7919453.hhr -oa3m ../results/7919453.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8HL2_L47A 50S ribosomal protei 56.3 30 0.00035 25.1 3.1 49 54-109 24-73 (80)
2 5T87_G CdiA toxin; Contact-dep 40.9 1.4E+02 0.0016 18.4 5.6 50 29-84 1-51 (76)
3 3DB7_A putative calcium-regula 34.5 1.8E+02 0.0021 20.0 4.2 77 27-109 9-85 (127)
4 PF12993.11 ; DUF3877 ; Domain 32.4 91 0.0011 25.3 2.8 22 45-67 143-164 (172)
5 7MSL_A AcrIIC4; Anti-CRISPR pr 28.8 32 0.00037 25.4 -0.2 15 29-43 25-43 (92)
6 4FR9_A Uncharacterized protein 25.4 2.1E+02 0.0025 20.3 3.4 80 20-109 1-81 (144)
7 PF11603.12 ; Sir1 ; Sir1, ORC- 23.7 1.9E+02 0.0021 21.5 2.9 35 26-81 57-91 (121)
8 PF06174.15 ; DUF987 ; Protein 22.5 1.2E+02 0.0014 21.4 1.6 28 66-102 20-47 (65)
No 1
>8HL2_L47A 50S ribosomal protein L47A; Sulfolobus acidocaldarius ribosome small subunit, RIBOSOME; HET: GNP, UNK;{Sulfolobus acidocaldarius DSM 639}
Probab=56.27 E-value=30 Score=25.09 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred EEecCCCeeEEEEccCCCCCCCCceeecccCCCccCCCcccccC-hhhCCHHHHccC
Q FD01847924_023 54 TKVGEGKKSVWHRFQSSAADGSGAFHWNGSTDGVDIKGRPRAID-IKNVPRSARNMK 109 (109)
Q Consensus 54 a~~~~G~k~~~HRFq~~~~dg~g~~HWnGStng~t~~G~~r~i~-~~~vP~~vk~~~ 109 (109)
++.+.|++.++-..--+..-++|.- |+=.+.. ...|+ -.++|++||+.|
T Consensus 24 ~r~e~Ge~~vv~~~~~~~~~~~gee-W~~d~~~------akeid~~~~Lp~dirk~L 73 (80)
T 8HL2_L47A 24 ARNEKGEKIIIFQSLTSAKLLNNEE-WKENTTD------AKNVEKREDLPQDVRKIT 73 (80)
T ss_pred EeCCCCCEEEEEEEeeEEecCCCcc-cCCCccc------ceeccchhhCCHHHHHHH
No 2
>5T87_G CdiA toxin; Contact-dependent growth inhibition, toxin, antitoxin, immunity protein, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG; HET: MSE; 2.4A {Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)}
Probab=40.91 E-value=1.4e+02 Score=18.40 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CcCCCCHHHHHHhCccCCCCCCcceEEe-cCCCeeEEEEccCCCCCCCCceeecccC
Q FD01847924_023 29 SVIPPNAEDLFKLSQIDPDDPKTRWTKV-GEGKKSVWHRFQSSAADGSGAFHWNGST 84 (109)
Q Consensus 29 SvLP~Nh~eLf~~Sv~~~~~~~~rwa~~-~~G~k~~~HRFq~~~~dg~g~~HWnGSt 84 (109)
|.-|.+....+..++........|..++ ..| .+..|.. .+.+.||+.-.+
T Consensus 1 s~~p~~~~~al~~~~~~~~~~~~r~gvd~~~g---~~~~~d~---~~~~~~~g~vr~ 51 (76)
T 5T87_G 1 SRGPSNGQSVLENSVQVKETSPRRVSVDPQTG---EFVVFDR---TLGDVYHGHVRA 51 (76)
T ss_dssp -CCCTTHHHHHHTCEEEETTEEEEEEECTTTC---CEEEEEE---EETTEEEEEEEC
T ss_pred CCCCCChHHHHhccccCCCCCCccEEEcCCCC---eEEEeeC---CCCCeEEecccc
No 3
>3DB7_A putative calcium-regulated periplasmic protein; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, ca-binding protein; HET: MSE, EDO; 1.4A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1, l.1.1.1
Probab=34.53 E-value=1.8e+02 Score=19.97 Aligned_cols=77 Identities=8% Similarity=0.129 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCcCCCCHHHHHHhCccCCCCCCcceEEecCCCeeEEEEccCCCCCCCCceeecccCCCccCCCcccccChhhCCHHHH
Q FD01847924_023 27 SKSVIPPNAEDLFKLSQIDPDDPKTRWTKVGEGKKSVWHRFQSSAADGSGAFHWNGSTDGVDIKGRPRAIDIKNVPRSAR 106 (109)
Q Consensus 27 ~kSvLP~Nh~eLf~~Sv~~~~~~~~rwa~~~~G~k~~~HRFq~~~~dg~g~~HWnGStng~t~~G~~r~i~~~~vP~~vk 106 (109)
..+.||+...+.|....| +.....|-+..++....|.--.. ++ -.+..+-+..=.........|....||..|+
T Consensus 9 ~~~~vP~~v~~~~~~~~p--~~~~~~~~~~~~~~~~~y~v~~~---~~-~~~~~~~~G~~~~~~~~~~~i~~~~lP~~i~ 82 (127)
T 3DB7_A 9 QVTQMPQLAQQFIKQHFS--DSKVALAKMESDFLYKSYEVIFT---NG-NKVEFDKKGNWEEVDCKHTSVPVAIIPAAIQ 82 (127)
T ss_dssp CGGGSCHHHHHHHHHHCT--TSCEEEEEEEEETTEEEEEEEET---TS-CEEEECTTSCEEEEECTTSCCCGGGSCHHHH
T ss_pred CHHHCCHHHHHHHHHHCC--CCceEEEEEecCCCceeEEEEEC---CC-CEEEECCCCCEEEEEcCCccccHHHcCHHHH
Q ss_pred ccC
Q FD01847924_023 107 NMK 109 (109)
Q Consensus 107 ~~~ 109 (109)
+.+
T Consensus 83 ~~i 85 (127)
T 3DB7_A 83 KYV 85 (127)
T ss_dssp HHH
T ss_pred HHH
No 4
>PF12993.11 ; DUF3877 ; Domain of unknown function, E. rectale Gene description (DUF3877)
Probab=32.42 E-value=91 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred CCCCCCcceEEecCCCeeEEEEc
Q FD01847924_023 45 DPDDPKTRWTKVGEGKKSVWHRF 67 (109)
Q Consensus 45 ~~~~~~~rwa~~~~G~k~~~HRF 67 (109)
+. .+..+|....++.-+.||||
T Consensus 143 d~-~D~y~YC~~~e~~~~~YHRF 164 (172)
T R6PVG9_9FIRM/3 143 SG-EDSYYYCFKDEDCHIIYHRF 164 (172)
T ss_pred CC-CCceEEEEeecCCcEEEEec
No 5
>7MSL_A AcrIIC4; Anti-CRISPR proteins, AcrIIC4, a Haemophilus parainfluenzae prophage, VIRAL PROTEIN; 1.73A {Haemophilus parainfluenzae}
Probab=28.82 E-value=32 Score=25.38 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CcCCCCHHH----HHHhCc
Q FD01847924_023 29 SVIPPNAED----LFKLSQ 43 (109)
Q Consensus 29 SvLP~Nh~e----Lf~~Sv 43 (109)
||||.||.| ||+.++
T Consensus 25 svlpknhrepikglfksav 43 (92)
T 7MSL_A 25 SVLPKNHREPIKGLFKSAV 43 (92)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred ccCCcccCccchhHHHHHH
No 6
>4FR9_A Uncharacterized protein; BLIP-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION; HET: MLY, MSE; 1.2A {Bacteroides fragilis}
Probab=25.40 E-value=2.1e+02 Score=20.35 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCCCCCCCCCcCCCCHHHHHHhCccCCCCCCcceEEecCCCeeEEEEccCCCCCCCCceeecccCCCccCCCccccc-Ch
Q FD01847924_023 20 RQVPFNSSKSVIPPNAEDLFKLSQIDPDDPKTRWTKVGEGKKSVWHRFQSSAADGSGAFHWNGSTDGVDIKGRPRAI-DI 98 (109)
Q Consensus 20 g~~~yn~~kSvLP~Nh~eLf~~Sv~~~~~~~~rwa~~~~G~k~~~HRFq~~~~dg~g~~HWnGStng~t~~G~~r~i-~~ 98 (109)
|+..=+.....||+...+.|....| ......|.+.... ..=.|.. ++....-|--.++. .......+ ..
T Consensus 1 ~~~~~~~~~~~~P~~v~~~~~~~~p--~a~~~~~~~~~~~---y~v~f~~---~~~~~~~~~~~~G~--~~~~~~~~~~~ 70 (144)
T 4FR9_A 1 GGDDDDTGYLPPSQAIQDALKKLYP--NATAIKWEQKGVY---YVADCQA---DGREKEVWFDANAN--WLMTETELNSI 70 (144)
T ss_dssp ---CGGGTCCCCCHHHHHHHHHHCT--TCEEEEEEEETTE---EEEEEEE---TTEEEEEEECTTSC--EEEEEEEESSG
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHCC--CCEEeEEEEeCCE---EEEEEEE---CCEEEEEEEcCCCC--EEEEEEEccch
Q ss_pred hhCCHHHHccC
Q FD01847924_023 99 KNVPRSARNMK 109 (109)
Q Consensus 99 ~~vP~~vk~~~ 109 (109)
..||..|++.+
T Consensus 71 ~~lP~~i~~~i 81 (144)
T 4FR9_A 71 NNLPPAVLTAF 81 (144)
T ss_dssp GGSCHHHHHHH
T ss_pred hhCCHHHHHHH
No 7
>PF11603.12 ; Sir1 ; Sir1, ORC-binding domain
Probab=23.71 E-value=1.9e+02 Score=21.45 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCCcCCCCHHHHHHhCccCCCCCCcceEEecCCCeeEEEEccCCCCCCCCceeec
Q FD01847924_023 26 SSKSVIPPNAEDLFKLSQIDPDDPKTRWTKVGEGKKSVWHRFQSSAADGSGAFHWN 81 (109)
Q Consensus 26 ~~kSvLP~Nh~eLf~~Sv~~~~~~~~rwa~~~~G~k~~~HRFq~~~~dg~g~~HWn 81 (109)
++...+|....+||+.+-. .-+.|.- +.+|..|.+
T Consensus 57 ~~~~lip~~S~~LF~~v~t------------------~~~~F~~---~~~G~~~~~ 91 (121)
T G0VIY8_NAUCC/5 57 PNTDLVPCSSKELFAQSHL------------------EVKKFVR---TDEGFKLLS 91 (121)
T ss_pred CCCceeecCCHHHHHhCcc------------------EEEEEEE---CCCccEEec
No 8
>PF06174.15 ; DUF987 ; Protein of unknown function (DUF987)
Probab=22.45 E-value=1.2e+02 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred EccCCCCCCCCceeecccCCCccCCCcccccChhhCC
Q FD01847924_023 66 RFQSSAADGSGAFHWNGSTDGVDIKGRPRAIDIKNVP 102 (109)
Q Consensus 66 RFq~~~~dg~g~~HWnGStng~t~~G~~r~i~~~~vP 102 (109)
|++. --.|++.|.||... --+-.++++|
T Consensus 20 rlf~---fctGKY~WhGS~~~------YtGrevqdi~ 47 (65)
T YPJJ_ECOLI/1-6 20 RIFR---YCTGKYQWHGSVCH------YTGRDVPDIT 47 (65)
T ss_pred eecc---cCCCcceecCcccc------ccCceecCCC