Query FD01872492_04568 DUF4329 domain-containing protein
Match_columns 115
No_of_seqs 9 out of 14
Neff 2.47118
Searched_HMMs 86581
Date Tue Feb 27 21:04:43 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/3093750.hhr -oa3m ../results/3093750.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15606.10 ; Ntox34 ; Bacteria 95.6 0.012 1.4E-07 41.5 1.5 53 45-115 1-75 (75)
2 2BSK_C MITOCHONDRIAL IMPORT IN 34.3 2.1E+02 0.0025 19.2 4.4 38 61-107 19-56 (89)
3 2NB2_A nigellin-1.1; AMP, anti 23.4 94 0.0011 20.6 1.2 34 61-107 1-34 (38)
4 PF21376.1 ; TOR1A_C ; Torsin-1 21.0 1.8E+02 0.0021 15.8 1.9 13 96-108 6-18 (58)
No 1
>PF15606.10 ; Ntox34 ; Bacterial toxin 34
Probab=95.62 E-value=0.012 Score=41.50 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred hHHHHHHHHHHccCc------chHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhHHHHH-HHHHHHhcc---------
Q FD01872492_045 45 AGLALLVCAAQSSGE------SRRCAKVKEKCHDQCADIFADTPDLLPGSGRDLAGRLRRC-IRECIEDHG--------- 108 (115)
Q Consensus 45 ~gl~~l~~~~~~~~~------t~rv~~iis~~~~~~~~k~~~~~~~~P~s~~D~aGr~rrC-I~~~l~d~G--------- 108 (115)
.|++..+...++.|| .++|++.+++.++..+++. | +| +++.|.++|
T Consensus 1 ~~~~~~~~~ma~~GNvaDtgI~~~~~~~i~~~~~~~gk~~------------~------~C~aL~~l~~~~d~~~~~iK~ 62 (75)
T RHSA_ECOLI/129 1 PGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKP------------D------RCDVLQELIDCGDISAKDAKS 62 (75)
T ss_pred CCccchhheecccCccccccHHHHHHHHHHHHHhcCCCCC------------C------HHHHHHHHHHcCCCChHhhHH
Q ss_pred ------cccccCC
Q FD01872492_045 109 ------CRAGTTS 115 (115)
Q Consensus 109 ------Cr~~~~s 115 (115)
||++|.|
T Consensus 63 TqKa~gcr~sr~s 75 (75)
T RHSA_ECOLI/129 63 TQKAWNCRHSRQS 75 (75)
T ss_pred HHHHhcccccCCC
No 2
>2BSK_C MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9 A; PROTEIN TRANSPORT, TIM9, TIM10, MITOCHONDRIAL PROTEIN IMPORT, TIM COMPLEX; HET: MSE; 3.3A {HOMO SAPIENS} SCOP: g.83.1.1
Probab=34.33 E-value=2.1e+02 Score=19.20 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhHHHHHHHHHHHhc
Q FD01872492_045 61 RRCAKVKEKCHDQCADIFADTPDLLPGSGRDLAGRLRRCIRECIEDH 107 (115)
Q Consensus 61 ~rv~~iis~~~~~~~~k~~~~~~~~P~s~~D~aGr~rrCI~~~l~d~ 107 (115)
..++.+.+.|+..|...+ |.+.+|.... .||..|....
T Consensus 19 ~~~~~lt~~Cf~kCv~~~-------~~~~L~~~e~--~Ci~~C~~k~ 56 (89)
T 2BSK_C 19 GTYNKLTETCFLDCVKDF-------TTREVKPEET--TCSEHCLQKY 56 (89)
T ss_dssp HHHHHHHHHHHHHSCCCC-------SCSSCCHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-------CCCCCCHhHH--HHHHHHHHHH
No 3
>2NB2_A nigellin-1.1; AMP, antimicrobial peptide, ANTIMICROBIAL PROTEIN, plant antimicrobial peptides, defense peptides, blackseed, antifungal activity, antibacterial activity, hairpin-like; NMR {Nigella sativa L}
Probab=23.37 E-value=94 Score=20.62 Aligned_cols=34 Identities=32% Similarity=0.673 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhHHHHHHHHHHHhc
Q FD01872492_045 61 RRCAKVKEKCHDQCADIFADTPDLLPGSGRDLAGRLRRCIRECIEDH 107 (115)
Q Consensus 61 ~rv~~iis~~~~~~~~k~~~~~~~~P~s~~D~aGr~rrCI~~~l~d~ 107 (115)
+|-++-+++|...|--.. |-|| ||-||--|.-+|
T Consensus 1 dryqdclsecnsrctyip------------dyag-mraciglcapac 34 (38)
T 2NB2_A 1 DRYQDCLSECNSRCTYIP------------DYAG-MRACIGLCAPAC 34 (38)
T ss_dssp CHHHHHHHHHHHHHTTCS------------CHHH-HHHHHHHHHHHH
T ss_pred ChhHHHHHHhhhccccCC------------Cccc-HHHHHhhhchhh
No 4
>PF21376.1 ; TOR1A_C ; Torsin-1A, C-terminal domain
Probab=21.03 E-value=1.8e+02 Score=15.83 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHhcc
Q FD01872492_045 96 LRRCIRECIEDHG 108 (115)
Q Consensus 96 ~rrCI~~~l~d~G 108 (115)
++.||+.++...|
T Consensus 6 v~~C~~~~~~~~~ 18 (58)
T Q28CP8_XENTR/2 6 VKMCVRAELRQRG 18 (58)
T ss_pred HHHHHHHHHHHCC