Query FD01844471_04082 hypothetical protein
Match_columns 109
No_of_seqs 7 out of 11
Neff 1.90976
Searched_HMMs 86581
Date Tue Feb 27 20:56:04 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6539448.hhr -oa3m ../results/6539448.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15540.10 ; Ntox47 ; Bacteria 97.9 0.00024 2.7E-09 41.7 7.8 81 13-99 23-107 (108)
2 3C0F_B Uncharacterized protein 70.7 8.2 9.4E-05 28.0 2.5 38 2-41 9-46 (91)
3 PF18505.5 ; DUF5619 ; Domain o 65.3 18 0.00021 25.4 3.2 35 2-41 6-40 (75)
4 PF05537.15 ; DUF759 ; Borrelia 45.2 23 0.00027 32.6 1.4 17 10-26 88-104 (429)
5 PF02843.20 ; GARS_C ; Phosphor 40.1 76 0.00088 19.8 2.8 33 2-34 55-87 (92)
6 PF14119.10 ; DUF4288 ; Domain 35.1 73 0.00084 20.8 2.2 19 4-22 25-43 (84)
7 7A0S_1 50S ribosomal protein L 34.1 88 0.001 18.8 2.3 22 25-46 25-46 (49)
8 6TH6_BG 50S ribosomal protein 33.0 1.1E+02 0.0013 22.6 3.1 28 27-59 14-41 (184)
9 2MXE_A MvaT; TRANSCRIPTION REG 31.5 93 0.0011 21.5 2.3 17 33-49 9-25 (55)
10 PF09954.13 ; DUF2188 ; Unchara 31.4 1.2E+02 0.0013 17.9 2.5 35 5-44 21-56 (60)
11 5MYJ_B5 50S ribosomal protein 30.7 1.2E+02 0.0013 18.4 2.4 22 25-46 25-46 (49)
12 PF16548.9 ; FlgT_N ; Flagellar 30.7 91 0.001 19.1 2.0 21 1-22 7-27 (88)
13 PF00347.27 ; Ribosomal_L6 ; Ri 30.3 1.9E+02 0.0022 16.9 3.4 28 27-59 2-29 (79)
14 PF00471.24 ; Ribosomal_L33 ; R 29.5 1.2E+02 0.0014 18.3 2.4 22 25-46 23-44 (47)
15 5LI0_5 50S ribosomal protein L 25.9 1.1E+02 0.0013 17.6 1.7 22 25-46 18-39 (39)
16 8BTR_LJ Ribosomal protein L6; 25.7 1.5E+02 0.0018 21.8 2.7 50 27-81 12-61 (185)
17 7UVW_G 50S ribosomal protein L 25.3 1.9E+02 0.0022 21.3 3.2 28 27-59 12-39 (177)
18 4WQ1_O8 50S ribosomal protein 24.8 1.7E+02 0.0019 17.3 2.4 22 25-46 21-42 (45)
19 3HBC_A Choloylglycine hydrolas 24.6 2.9E+02 0.0033 21.4 4.1 54 4-58 108-170 (320)
20 7P6Z_z 50S ribosomal protein L 24.6 1.7E+02 0.0019 18.0 2.4 23 24-46 26-48 (53)
21 2GU3_A YpmB protein; APC1927, 24.5 2.6E+02 0.003 20.1 3.6 44 9-53 11-54 (136)
22 7PKT_z Mitochondrial ribosomal 24.4 1.5E+02 0.0018 18.5 2.3 22 25-46 33-54 (59)
23 PF20844.1 ; PCF11_RFEG_rpt ; P 24.3 4.1E+02 0.0048 19.4 4.6 62 36-101 13-76 (87)
24 8FN2_e 50S ribosomal protein L 24.3 1.5E+02 0.0017 18.1 2.2 25 25-49 25-49 (51)
25 6XYW_AC At3g06320; Ribosome, M 23.8 1.8E+02 0.0021 18.2 2.4 22 25-46 32-53 (58)
26 PF04999.17 ; FtsL ; Cell divis 23.6 1.5E+02 0.0017 17.6 2.0 33 5-37 64-96 (96)
27 8CVL_26 50S ribosomal protein 23.3 1.9E+02 0.0022 17.5 2.4 25 25-49 29-53 (54)
28 7SFR_1 50S ribosomal protein L 23.0 2E+02 0.0023 17.6 2.5 22 25-46 31-52 (55)
29 8CDR_LL 60S ribosomal protein 22.9 2.1E+02 0.0024 21.4 3.1 28 27-59 13-40 (191)
30 7ZQ5_u 50S ribosomal protein L 22.5 2.8E+02 0.0032 19.3 3.4 30 26-55 55-84 (93)
31 3J79_H 60S ribosomal protein u 22.4 2.4E+02 0.0028 20.4 3.2 28 27-59 13-40 (190)
32 6YWE_F uL6m; Neurospora crassa 22.1 2.6E+02 0.0031 23.0 3.7 32 27-59 62-104 (255)
33 8BH1_D Cell division protein F 22.1 1.2E+02 0.0014 18.0 1.4 33 5-37 65-97 (97)
34 PF21706.1 ; FCSD_central ; Sul 21.6 2.7E+02 0.0031 19.3 3.2 44 13-59 65-115 (118)
35 6ZU5_LH0 uL6; Microsporidia, P 21.4 2.7E+02 0.0031 20.0 3.2 28 27-59 13-40 (186)
36 PF01087.26 ; GalP_UDP_transf ; 21.0 2.3E+02 0.0027 19.8 2.8 30 23-52 1-30 (175)
37 5DM6_1 50S ribosomal protein L 20.6 2.2E+02 0.0026 17.6 2.4 21 25-46 31-51 (54)
38 PF18929.4 ; DUF5678 ; Family o 20.6 3E+02 0.0035 15.9 3.9 32 4-38 18-49 (49)
39 8A57_6 50S ribosomal protein L 20.2 2.3E+02 0.0026 17.2 2.4 22 25-46 25-46 (49)
No 1
>PF15540.10 ; Ntox47 ; Bacterial toxin 47
Probab=97.95 E-value=0.00024 Score=41.73 Aligned_cols=81 Identities=37% Similarity=0.616 Sum_probs=58.6 Template_Neff=11.800
Q ss_pred HHHHHHHHhcCCCChhhCceee----ecCCCCeEEEEeCCCCCeeeecCCCCCCCCCCCCCCCccceecCCccCCCCccc
Q FD01844471_040 13 AARRTGFENAGMTNPEDVTFSK----VDPKTGTVVEFKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKRGSGGANR 88 (109)
Q Consensus 13 ~AR~~AF~~Agm~dp~~V~FsK----~dp~TGTvvEFkG~~GAkVaYD~pHad~~~~~gHDkpHv~wq~~gKR~~gga~R 88 (109)
..+..+|...++.. ....+.+ ... .....+++..+|+.|.+|..|.. .+.+.+|++|+..++++.++..+
T Consensus 23 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 96 (108)
T Q65M69_BACLD/4 23 DALDEAFKRTGVPK-KEFKVTKWGKDENG-KSFPVEWRSKNGAEVNIDVGHTK----NGPDVPHTGYQTAGKRGGGGAIR 96 (108)
T ss_pred HHHHHHHHHhCCCC-ccceeeEeEeCCCC-CccCeEEeCCCCCeEEeeccccc----CCCCCCceEeecCCCCCCCCccc
Confidence 44455666677654 3355554 222 23556778889999999987753 37889999999999998888899
Q ss_pred CCccCCCCCCC
Q FD01844471_040 89 GNITYDGPQHP 99 (109)
Q Consensus 89 gN~ty~g~qhP 99 (109)
+++.+.+...+
T Consensus 97 ~~~~~~~~~~~ 107 (108)
T Q65M69_BACLD/4 97 GHILVDSVPIN 107 (108)
T ss_pred cceEecCCCCC
Confidence 99988877654
No 2
>3C0F_B Uncharacterized protein AF_1514; hot dog fold, sulphur SAD, methylated, UNKNOWN FUNCTION; HET: MLY; 1.8A {Archaeoglobus fulgidus DSM 4304}
Probab=70.69 E-value=8.2 Score=28.03 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred ceeeecCccHHHHHHHHHHhcCCCChhhCceeeecCCCCe
Q FD01844471_040 2 LAILEHQSNFDAARRTGFENAGMTNPEDVTFSKVDPKTGT 41 (109)
Q Consensus 2 ~~~~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK~dp~TGT 41 (109)
|.| .-.-+|++||+.|.+.|.-. ++.+-.+-+|-+||.
T Consensus 9 i~~-~~~ldf~~A~~lA~~~A~~~-~~~mLLsW~D~~~g~ 46 (91)
T 3C0F_B 9 VNL-QKEVSLEEAERYAKNIASKY-GDGILLSVHDSKTGY 46 (91)
T ss_dssp ECC-SSCCCHHHHHHHHHHHHTTT-SEEEEEEEEETTTCC
T ss_pred eec-CCCCCHHHHHHHHHHHHHhh-CCcEEEEEEeCCCCC
No 3
>PF18505.5 ; DUF5619 ; Domain of unknown function (DUF5619)
Probab=65.34 E-value=18 Score=25.39 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred ceeeecCccHHHHHHHHHHhcCCCChhhCceeeecCCCCe
Q FD01844471_040 2 LAILEHQSNFDAARRTGFENAGMTNPEDVTFSKVDPKTGT 41 (109)
Q Consensus 2 ~~~~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK~dp~TGT 41 (109)
|.|- -.-+|++||+.|-+.|. +.+-.+-+|.+||.
T Consensus 6 i~~~-~~ldf~~A~~lA~~~A~----~~mllsW~D~~~~~ 40 (75)
T N0BE46_9EURY/1 6 VSVD-RDVDFNLARKMADVIAD----DGMLVSWFDGKKGT 40 (75)
T ss_pred EecC-CCCCHHHHHHHHHHHhc----CCEEEEEEeCCCCc
No 4
>PF05537.15 ; DUF759 ; Borrelia burgdorferi protein of unknown function (DUF759)
Probab=45.16 E-value=23 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred cHHHHHHHHHHhcCCCC
Q FD01844471_040 10 NFDAARRTGFENAGMTN 26 (109)
Q Consensus 10 ~FD~AR~~AF~~Agm~d 26 (109)
.|++||++||++.=|.|
T Consensus 88 ~FekArkeAfkrSlmsd 104 (429)
T Q9S0F6_BORBU/1 88 GFEKARKEAFRRSLMSD 104 (429)
T ss_pred CHHHHHHHHHHHhhhcH
No 5
>PF02843.20 ; GARS_C ; Phosphoribosylglycinamide synthetase, C domain
Probab=40.06 E-value=76 Score=19.81 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred ceeeecCccHHHHHHHHHHhcCCCChhhCceee
Q FD01844471_040 2 LAILEHQSNFDAARRTGFENAGMTNPEDVTFSK 34 (109)
Q Consensus 2 ~~~~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK 34 (109)
|+++...+++++|++.++.......-.+..|.+
T Consensus 55 ~~~~~~~~~~~~a~~~~~~~~~~i~~~~~~yR~ 87 (92)
T C7LUV9_DESBD/3 55 LGITALGTDLEQARERAYQAVARIHFDNSYYRK 87 (92)
T ss_pred EEEEEecCCHHHHHHHHHHHHhcCccCCCEeec
No 6
>PF14119.10 ; DUF4288 ; Domain of unknown function (DUF4288)
Probab=35.08 E-value=73 Score=20.82 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred eeecCccHHHHHHHHHHhc
Q FD01844471_040 4 ILEHQSNFDAARRTGFENA 22 (109)
Q Consensus 4 ~~~H~~~FD~AR~~AF~~A 22 (109)
+|..++|+++|+++|=+.|
T Consensus 25 ~Lv~A~s~e~A~~kA~~~~ 43 (84)
T K9U1K2_CHRTP/1 25 ILIQANSLEEAREKALLYS 43 (84)
T ss_pred EEEEeCCHHHHHHHHHHHH
No 7
>7A0S_1 50S ribosomal protein L33; Complex, NPET, Macrolide, A2058, ANTIBIOTIC; HET: SPD, QU2, MG, MPD; 3.22A {Deinococcus radiodurans R1}
Probab=34.09 E-value=88 Score=18.78 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..|+.+.+.|+||....-+.|+
T Consensus 25 ~~~~kl~l~Ky~p~~~kh~~~~ 46 (49)
T 7A0S_1 25 NTQAKLELKKYDPVAKKHVVFR 46 (49)
T ss_dssp SSCSSCCEEEECCSSSSCEEEE
T ss_pred CCccceEEEEEccccCceEEEE
No 8
>6TH6_BG 50S ribosomal protein L6; T. kodakarensis, ac4C, Ribosome, cryo-EM; HET: ZN, 5MU, 6MZ, 5MC, 4AC, OMU, 4SU, MA6, OMC, OMG, LHH, A2M, LV2; 2.55A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
Probab=32.95 E-value=1.1e+02 Score=22.63 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|++|+++. .+.++.++|+.| ++.++-+|
T Consensus 14 P~~v~v~~----~~~~l~v~Gp~G-~~~~~~~~ 41 (184)
T 6TH6_BG 14 PEGVEVTV----EGNTVKVKGPKG-ELQRELKY 41 (184)
T ss_pred CCCCEEEE----eCCEEEEEcCCc-EEEEEecC
No 9
>2MXE_A MvaT; TRANSCRIPTION REGULATOR; NMR {Pseudomonas aeruginosa PAO1}
Probab=31.52 E-value=93 Score=21.53 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred eeecCCCCeEEEEeCCC
Q FD01844471_040 33 SKVDPKTGTVVEFKGPN 49 (109)
Q Consensus 33 sK~dp~TGTvvEFkG~~ 49 (109)
...+|-||.+||-+|.+
T Consensus 9 ~Y~NPhTGEvVetkg~n 25 (55)
T 2MXE_A 9 QYKNPHTGEVIETKGGN 25 (55)
T ss_dssp EEEETTTTEEEEESSSC
T ss_pred EEeCCCCCCEEEEcCCC
No 10
>PF09954.13 ; DUF2188 ; Uncharacterized protein conserved in bacteria (DUF2188)
Probab=31.39 E-value=1.2e+02 Score=17.86 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred eecCccHHHHHHHHHHhc-CCCChhhCceeeecCCCCeEEE
Q FD01844471_040 5 LEHQSNFDAARRTGFENA-GMTNPEDVTFSKVDPKTGTVVE 44 (109)
Q Consensus 5 ~~H~~~FD~AR~~AF~~A-gm~dp~~V~FsK~dp~TGTvvE 44 (109)
+..+++-++|-+.|-+.| .. +..|..-+.| |++.+
T Consensus 21 ~~~~~tk~eAi~~a~~~A~~~--~~~v~i~~~d---G~i~~ 56 (60)
T B2GBG8_LIMF3/5 21 SKIYSTKSEAIKAGRQQAINN--HAELVSQKRN---GQINL 56 (60)
T ss_pred eeecCCHHHHHHHHHHHHHHC--CCEEEEECCC---CCEEE
No 11
>5MYJ_B5 50S ribosomal protein L33 3; ribosome, 70S, lactoccocus lactis, Cryo-EM; 5.6A {Lactococcus lactis subsp. cremoris MG1363}
Probab=30.70 E-value=1.2e+02 Score=18.43 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
.+|+.+.+.|+||....-+.|+
T Consensus 25 ~~~~kl~lkKy~~~~~kh~~~~ 46 (49)
T 5MYJ_B5 25 AKEKRVEVKKFCRTCGKHTLHK 46 (49)
T ss_pred CCccceEEEEEcCCCCCeEeEe
No 12
>PF16548.9 ; FlgT_N ; Flagellar assembly protein T, N-terminal domain
Probab=30.69 E-value=91 Score=19.06 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CceeeecCccHHHHHHHHHHhc
Q FD01844471_040 1 GLAILEHQSNFDAARRTGFENA 22 (109)
Q Consensus 1 ~~~~~~H~~~FD~AR~~AF~~A 22 (109)
|.+.+.. .+..+||++|+.+|
T Consensus 7 G~~~~~~-~~~~~ar~~A~~~A 27 (88)
T Q5QYW7_IDILO/2 7 GTARIIN-GDTNAAREKAIENA 27 (88)
T ss_pred EEEEEec-CCHHHHHHHHHHHH
No 13
>PF00347.27 ; Ribosomal_L6 ; Ribosomal protein L6
Probab=30.30 E-value=1.9e+02 Score=16.95 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|.+|+-... +.++.|+|+.| ++.|+.|+
T Consensus 2 p~~v~v~~~----~~~~~~~G~~g-~~~~~~~~ 29 (79)
T RL6_THEMA/11-8 2 PQGVTVEIK----DNVVKVKGPKG-ELSQEFLP 29 (79)
T ss_pred CCCcEEEEE----CCEEEEEcCCc-EEEEEcCC
No 14
>PF00471.24 ; Ribosomal_L33 ; Ribosomal protein L33
Probab=29.54 E-value=1.2e+02 Score=18.34 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..|+.+.+.|+||....-+.|+
T Consensus 23 ~~~~kl~lkKycp~~~kh~~~~ 44 (47)
T RL33_SYNAS/3-4 23 TMQGRFEIKKYCRFCRSHKLHR 44 (47)
T ss_pred CCccceEEEEEcCCCCceEeEE
No 15
>5LI0_5 50S ribosomal protein L33 2; pathogenic ribosome, bL31 B-type, ribosome; HET: MG;{Staphylococcus aureus (strain NCTC 8325)}
Probab=25.90 E-value=1.1e+02 Score=17.61 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..++.+.+.|+||....-+.|+
T Consensus 18 ~~~~kl~lkKy~p~~~kh~~~k 39 (39)
T 5LI0_5 18 NNPERVEMKKFCSRENKQTLHR 39 (39)
T ss_pred CCccceeEEEeccccCceeecC
No 16
>8BTR_LJ Ribosomal protein L6; Ribosome, Translation, Giardia, Eukaryote, Eukaryotic, Macromolecule, tRNA; 3.25A {Giardia lamblia ATCC 50803}
Probab=25.73 E-value=1.5e+02 Score=21.84 Aligned_cols=50 Identities=30% Similarity=0.402 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCCCCCCCCCCCCCCccceecCCcc
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKR 81 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pHad~~~~~gHDkpHv~wq~~gKR 81 (109)
|.+|+.+. .+.++.++|+.| .+.++-+|.........++-.+......|+
T Consensus 12 P~~v~v~~----~~~~l~v~G~~G-~~~~~~~~~~i~~~~~~~~l~~~~~~~~k~ 61 (185)
T 8BTR_LJ 12 PTDVECTI----NKRVVTVKGKKG-TLVRDFSHAPLDITHANDTISVAVWFPRGK 61 (185)
T ss_pred CCCcEEEE----cCCEEEEEcCCc-EEEEEeCCCCcEEEEeCCeEEEeecCCChh
No 17
>7UVW_G 50S ribosomal protein L6; Streptothricin, Nourseothricin, Antibiotic, Ribosome, Ribosome-RNA complex; HET: H2U, 5MU, 6MZ, 2MG, 5MC, 2MA, 4OC, OMU, 4SU, MA6, PSU, OMG, UR3, 7MG; 2.37A {Acinetobacter baumannii AB0057}
Probab=25.34 E-value=1.9e+02 Score=21.35 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|++|+++. .+.++.++|+.| ++.++-++
T Consensus 12 P~~v~v~~----~~~~l~v~Gp~G-~~~~~~~~ 39 (177)
T 7UVW_G 12 PNGVTVTQ----NGRQVEVKGSKG-TLSFNLHA 39 (177)
T ss_pred CCCcEEEE----cCCEEEEEcCCc-EEEEEeCC
No 18
>4WQ1_O8 50S ribosomal protein L33; ribosome, translation, mismatch; HET: QUO, 4SU, OMG, PSU, MG, MIA, H2U, OMC, 5MU; 3.1A {Thermus thermophilus HB8}
Probab=24.75 E-value=1.7e+02 Score=17.34 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
.+|+.+.+.|+||....-+.|+
T Consensus 21 ~~~~kl~lkKy~p~~~kh~~~~ 42 (45)
T 4WQ1_O8 21 NTPNKLELRKYCPWCRKHTVHR 42 (45)
T ss_pred CCCCceEEEeeCCCCCceEeEe
No 19
>3HBC_A Choloylglycine hydrolase; alpha-beta sandwich, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Hydrolase; HET: MSE, GOL, EDO; 2.269A {Bacteroides thetaiotaomicron} SCOP: l.1.1.1, d.153.1.0
Probab=24.58 E-value=2.9e+02 Score=21.38 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred eeecCccHHHHHHHHHH---------hcCCCChhhCceeeecCCCCeEEEEeCCCCCeeeecCC
Q FD01844471_040 4 ILEHQSNFDAARRTGFE---------NAGMTNPEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAP 58 (109)
Q Consensus 4 ~~~H~~~FD~AR~~AF~---------~Agm~dp~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~p 58 (109)
||+.+.|.++|.+..-. ...+.......|.-.| .+|..+-++-..+....++.+
T Consensus 108 ~L~~~~s~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~iaD-~~G~~~viE~~~~~~~v~~~~ 170 (320)
T 3HBC_A 108 VLDNFATVREAVDEMKKETFRIDAPRMPNGGPESTLHMAITD-ETGNTAVIEYLDGKLSIHEGK 170 (320)
T ss_dssp HHHHCSSHHHHHHHHTTCCSEEECCCC------CCEEEEEEC-TTCCEEEEEEETTEEEEEEST
T ss_pred HHHhCCCHHHHHHHHhcCCeEEeCCCCCCCCCCcceEEEEEc-CCCCeEEEEEECCEEEEEeCC
No 20
>7P6Z_z 50S ribosomal protein L33 1; In-cell cryo-electron tomography, sub-tomogram analysis, ribosome; HET: MG; 3.5A {Mycoplasma pneumoniae M129}
Probab=24.56 E-value=1.7e+02 Score=17.95 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCChhhCceeeecCCCCeEEEEe
Q FD01844471_040 24 MTNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 24 m~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..+|+.+.+.|+||....-+.|+
T Consensus 26 ~~~~~kl~lkKy~p~~~kh~~~~ 48 (53)
T 7P6Z_z 26 KKNPEKLALNKFCSRCRKVVVHK 48 (53)
T ss_dssp TTCCSCCEEEEEETTTTEEEEEE
T ss_pred CCCcceeEEEEEcccCCceEeEe
No 21
>2GU3_A YpmB protein; APC1927, structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION; 1.74A {Bacillus subtilis subsp. subtilis str. 168} SCOP: d.17.1.6
Probab=24.47 E-value=2.6e+02 Score=20.09 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred ccHHHHHHHHHHhcCCCChhhCceeeecCCCCeEEEEeCCCCCee
Q FD01844471_040 9 SNFDAARRTGFENAGMTNPEDVTFSKVDPKTGTVVEFKGPNGAKV 53 (109)
Q Consensus 9 ~~FD~AR~~AF~~Agm~dp~~V~FsK~dp~TGTvvEFkG~~GAkV 53 (109)
...++|++.|.+.+++...++|.+...++ +=.+|.-+-.+|.++
T Consensus 11 ~~~~~a~~~a~~~~~l~~V~~~~~y~g~~-~y~vv~G~d~~g~~~ 54 (136)
T 2GU3_A 11 EGHEAAAAEAKKETDLAHVDQVETFVGKE-KYYVVKGTDKKGTAL 54 (136)
T ss_dssp TTHHHHHHHHHHHSSEEEEEEEEEEESSS-EEEEEEEEETTCCEE
T ss_pred HHHHHHHHHHHHhcCCceeEEEEEEcCCC-eEEEEEEECCCCCEE
No 22
>7PKT_z Mitochondrial ribosomal protein L33; Mitochondria, mitoribosome, alga, RIBOSOME; HET: MG; 3.0A {Chlamydomonas reinhardtii}
Probab=24.40 E-value=1.5e+02 Score=18.50 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
.+|+.+.+.|+||....-+.|+
T Consensus 33 ~~~~kl~l~Ky~p~~~kh~~~~ 54 (59)
T 7PKT_z 33 NTPWKLKLMKFDPKVNKHVLFE 54 (59)
T ss_dssp TCCSCCCEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEECcccCceEEEE
No 23
>PF20844.1 ; PCF11_RFEG_rpt ; Pre-mRNA cleavage complex 2 protein Pcf11, RFEGP repeat
Probab=24.33 E-value=4.1e+02 Score=19.40 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred cCCCCeEEEEeCCCCCeeeecCCCCCCCCCCCCCCCccceecCCccCCCC--cccCCccCCCCCCCCC
Q FD01844471_040 36 DPKTGTVVEFKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKRGSGG--ANRGNITYDGPQHPHR 101 (109)
Q Consensus 36 dp~TGTvvEFkG~~GAkVaYD~pHad~~~~~gHDkpHv~wq~~gKR~~gg--a~RgN~ty~g~qhP~R 101 (109)
+...|..+.|.|+.|..+.||.||. .+. --|. .-.-+...-|-.|- ..|+++-++|++.+.+
T Consensus 13 eg~~g~~~Rfeg~~g~~~rFdGp~~--~~~-RFeg-~~~~~~~~~Rfdgp~g~~~g~~RFdgp~g~~~ 76 (87)
T A0A6P8RJL6_GEO 13 EGPPGQPVRFEGPPGQPVRFEGPPG--QPV-RFEG-PPGQPMGPQRFEGPLGQPVGVQRFEGGPVQPV 76 (87)
T ss_pred CCCCCCCceecCCCCCCCccCCCCC--CCC-CCCC-CCCCCCCCccccCCCCCCCCcccccCCCCCCC
No 24
>8FN2_e 50S ribosomal protein L33; hibernating ribosome, bacterial, pathogen, 50S, translation, RIBOSOME; 3.4A {Borreliella burgdorferi B31}
Probab=24.27 E-value=1.5e+02 Score=18.14 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CChhhCceeeecCCCCeEEEEeCCC
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFKGPN 49 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFkG~~ 49 (109)
.+|+.+.+.|+||....-++|+..+
T Consensus 25 ~~~~kl~lkKy~p~~~kh~~~~e~k 49 (51)
T 8FN2_e 25 NKQEKLELMKYCPKLRKHTLHKEGK 49 (51)
T ss_dssp TCCSCCEEEEEETTTTEEEEEEEEC
T ss_pred CcccceEEEEECcccCceeeeeecc
No 25
>6XYW_AC At3g06320; Ribosome, Mitochondria, Plant; 3.86A {Arabidopsis thaliana}
Probab=23.80 E-value=1.8e+02 Score=18.17 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..++.+.+.|+||....-+.|+
T Consensus 32 ~~~~kl~lkKy~p~~~kh~~~~ 53 (58)
T 6XYW_AC 32 GLLEKLEFRKYDPRVNRHVLFT 53 (58)
T ss_pred CcccceEEEEeCccCCceEEEE
No 26
>PF04999.17 ; FtsL ; Cell division protein FtsL
Probab=23.60 E-value=1.5e+02 Score=17.55 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eecCccHHHHHHHHHHhcCCCChhhCceeeecC
Q FD01844471_040 5 LEHQSNFDAARRTGFENAGMTNPEDVTFSKVDP 37 (109)
Q Consensus 5 ~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK~dp 37 (109)
+....+.+...+.|-+..||..|+...+-..+|
T Consensus 64 i~~~~~~~~i~~~a~~~lg~~~~~~~~~~~v~~ 96 (96)
T Q3IFZ7_PSET1/1 64 EEFYSQHARIEEVAISQLKMKRPTSQDEQVIIL 96 (96)
T ss_pred HHHhhcHHHHHHHHHHhcCCCCCCccceeeecC
No 27
>8CVL_26 50S ribosomal protein L33; 70S ribosome, non-hydrolyzable, aminoacyl-tRNA, peptidyl-tRNA formylation, pre-attack state, transpeptidation, peptidyl transferase center, nascent peptide exit; HET: 8AN, FME, ZN, SF4, MA6, 5MC, MIA, OMC, 4OC, OMU, 4SU, OMG, PSU, MG, G7M, 0TD, M2G, 2MA, UR3, F3N, 2MG, 5MU; 2.3A {Thermus thermophilus HB8}
Probab=23.30 E-value=1.9e+02 Score=17.51 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CChhhCceeeecCCCCeEEEEeCCC
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFKGPN 49 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFkG~~ 49 (109)
.+|+.+...|+||....-+.|+..+
T Consensus 29 ~~~~kl~l~Ky~~~~~~h~~~~e~k 53 (54)
T 8CVL_26 29 NTPNKLELRKYCPWCRKHTVHREVK 53 (54)
T ss_pred CCCCceEEEEEcCcCCceEEEEeec
No 28
>7SFR_1 50S ribosomal protein L33; unmethylated, Mtb ribosome, drug discovery, SEQ-9, Structural Genomics, TB Structural Genomics Consortium, TBSGC, RIBOSOME-ANTIBIOTIC complex; HET: G7M, 5MU, 6MZ, 2MG, 5MC, WDP, 4OC, MA6, OMC, OMG, UR3, MG; 2.6A {Mycobacterium tuberculosis}
Probab=23.00 E-value=2e+02 Score=17.63 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..|+.+.+.|+||..+.-+.|+
T Consensus 31 ~~~~kl~l~Ky~p~~~kh~~~~ 52 (55)
T 7SFR_1 31 NDPDRLELKKFCPNCGKHQAHR 52 (55)
T ss_dssp TCCSCCEEEEEETTTTEEEEEE
T ss_pred CCcCceEEEEECCCCCCeEeEE
No 29
>8CDR_LL 60S ribosomal protein L9-A; Eukaryote, ribosome, translocation, elongation; HET: YYG, 1MA, B8N, UR3, MG, SO1, 5MC, G7M, OMU, OMC, GDP, 4AC, A2M, DDE, K, OMG, MA6, SPD; 2.04A {Saccharomyces cerevisiae}
Probab=22.94 E-value=2.1e+02 Score=21.39 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|.+|+.+. .+.++.|+|+.| ++.++-+|
T Consensus 13 P~~V~v~~----~~~~l~v~Gp~G-~l~~~~~~ 40 (191)
T 8CDR_LL 13 PEGVTVSI----KSRIVKVVGPRG-TLTKNLKH 40 (191)
T ss_pred CCCCEEEE----eCCEEEEEcCCe-EEEEEeCC
No 30
>7ZQ5_u 50S ribosomal protein L24; ribosome, exit tunnel, structural modification, ribosomal protein;{Escherichia coli}
Probab=22.55 E-value=2.8e+02 Score=19.31 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred ChhhCceeeecCCCCeEEEEeCCCCCeeee
Q FD01844471_040 26 NPEDVTFSKVDPKTGTVVEFKGPNGAKVAY 55 (109)
Q Consensus 26 dp~~V~FsK~dp~TGTvvEFkG~~GAkVaY 55 (109)
.++||.+...+....+-+.|+-++|.+|.|
T Consensus 55 ~~snv~lv~~~~~~~~r~~~~~~~g~k~R~ 84 (93)
T 7ZQ5_u 55 QVSNVAIFNAATGKADRVGFRFEDGKKVRF 84 (93)
T ss_pred CHHHeEEEeCCCCCCeeEEEEeeCCcEEEE
No 31
>3J79_H 60S ribosomal protein uL6; emetine, RIBOSOME-INHIBITOR complex; HET: MG; 3.2A {Plasmodium falciparum}
Probab=22.38 E-value=2.4e+02 Score=20.43 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|.+|+.+. .+.++.++|+.| ++.++-+|
T Consensus 13 P~~v~v~~----~~~~l~v~G~~G-~~~~~~~~ 40 (190)
T 3J79_H 13 PEGVKVAI----NARKVTVSGKYG-TLRRSFRH 40 (190)
T ss_dssp CTTCEECC----SSSEEEEESSSC-EEEEECTT
T ss_pred CCCCEEEE----CCCEEEEEcCCe-EEEEEeCC
No 32
>6YWE_F uL6m; Neurospora crassa, translating Mitoribosomes, tRNA, mRNA, mL108, TRANSLATION; HET: NAD, K, ATP, MG, SPM;{Neurospora crassa}
Probab=22.10 E-value=2.6e+02 Score=22.96 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred hhhCceeeecCCC-----------CeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKT-----------GTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~T-----------GTvvEFkG~~GAkVaYD~pH 59 (109)
|.+|+++..++.. +.++.++|+.| ++.++-|+
T Consensus 62 P~~V~v~~~~~~~~~~~~~~~~~~~~~l~vkGplG-~l~~~i~~ 104 (255)
T 6YWE_F 62 PPGVEITIGEPFVKRDMTQWKQQPKRKITVQGPLG-QLEMDIPD 104 (255)
T ss_dssp CTTCEEEECCCBCCCCTTCSCCCCEEEEEEECSSC-EEEEEEET
T ss_pred CCCCEEEEcCCCcccCccccccCCCCEEEEEcCCc-EEEEEcCC
No 33
>8BH1_D Cell division protein FtsL; bacterial cell division, peptidoglycan synthesis, membrane protein complex, MEMBRANE PROTEIN;{Pseudomonas aeruginosa PAO1}
Probab=22.09 E-value=1.2e+02 Score=18.03 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eecCccHHHHHHHHHHhcCCCChhhCceeeecC
Q FD01844471_040 5 LEHQSNFDAARRTGFENAGMTNPEDVTFSKVDP 37 (109)
Q Consensus 5 ~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK~dp 37 (109)
+....+.+...+.|-++.||..|....+...+|
T Consensus 65 ~~~l~~~~~i~~~a~~~lg~~~~~~~~~~~~~~ 97 (97)
T 8BH1_D 65 QSTWTAHSRIESLAVEQLRMRVPDPAEVRMVAP 97 (97)
T ss_pred HHHHhcHHHHHHHHHHhcCCCCCCHHhceecCC
No 34
>PF21706.1 ; FCSD_central ; Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, central
Probab=21.60 E-value=2.7e+02 Score=19.34 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHHh---cCCCChh--hCcee-eecCCCCeEEEEeCCCC-CeeeecCCC
Q FD01844471_040 13 AARRTGFEN---AGMTNPE--DVTFS-KVDPKTGTVVEFKGPNG-AKVAYDAPH 59 (109)
Q Consensus 13 ~AR~~AF~~---Agm~dp~--~V~Fs-K~dp~TGTvvEFkG~~G-AkVaYD~pH 59 (109)
++-+++|+. .+..--. +-... .+|++..+++- .+| .++.||-.|
T Consensus 65 ~~~~~~~~~~~~~~I~~~~~~~~~~~~~vd~~~~~i~~---~~g~~~~~yDll~ 115 (118)
T D3SD06_THISK/1 65 GLFEEGWAMHYGDMIEWRGASDGGLVEEIDVGGMTARS---DSGFERVRADVMN 115 (118)
T ss_pred HHHHHHHHHHhccceEEEecCCCceEEEEeCCCCEEEe---CCcceEEEceEEE
No 35
>6ZU5_LH0 uL6; Microsporidia, Pathogen, Ribosome, Hibernation, Genome Compaction; HET: AMP, MG; 2.9A {Paranosema locustae}
Probab=21.36 E-value=2.7e+02 Score=20.02 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred hhhCceeeecCCCCeEEEEeCCCCCeeeecCCC
Q FD01844471_040 27 PEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPH 59 (109)
Q Consensus 27 p~~V~FsK~dp~TGTvvEFkG~~GAkVaYD~pH 59 (109)
|.+|+.+. .+.++.++|+.| ++.++-+|
T Consensus 13 P~~v~v~~----~~~~~~v~G~~G-~~~~~~~~ 40 (186)
T 6ZU5_LH0 13 PEGCSVEI----LERVMTVRGKRA-TAVRDLSH 40 (186)
T ss_pred CCCCEEEE----eCcEEEEEcCCc-EEEEEeCC
No 36
>PF01087.26 ; GalP_UDP_transf ; Galactose-1-phosphate uridyl transferase, N-terminal domain
Probab=20.99 E-value=2.3e+02 Score=19.78 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCChhhCceeeecCCCCeEEEEeCCCCCe
Q FD01844471_040 23 GMTNPEDVTFSKVDPKTGTVVEFKGPNGAK 52 (109)
Q Consensus 23 gm~dp~~V~FsK~dp~TGTvvEFkG~~GAk 52 (109)
+--+|.++..-+.||.||+.+.|--....+
T Consensus 1 ~~~~~~~~~~~r~d~~t~~~~~~~~~R~~r 30 (175)
T Q9CM11_PASMU/4 1 SRFEPTEHPHRRYNPLTDQWVLVSPHRAKR 30 (175)
T ss_pred CCCCccCCCeeeEeCCCCCEEEEccccccC
No 37
>5DM6_1 50S ribosomal protein L33; protein synthesis, peptidyltransferase, ribozyme, ribonucleoprotein, ribosome; HET: MG; 2.9A {Deinococcus radiodurans}
Probab=20.56 E-value=2.2e+02 Score=17.56 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..++.+.+.|+||.. .-+.|+
T Consensus 31 ~~~~kl~lkKf~p~~-kh~~~~ 51 (54)
T 5DM6_1 31 NTQAKLELKKYDPVA-AHVVFA 51 (54)
T ss_dssp SCTTCCEECCCCTTS-SCCCEE
T ss_pred CCcccEEEEEECCCC-cEEEEE
No 38
>PF18929.4 ; DUF5678 ; Family of unknown function (DUF5678)
Probab=20.56 E-value=3e+02 Score=15.86 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred eeecCccHHHHHHHHHHhcCCCChhhCceeeecCC
Q FD01844471_040 4 ILEHQSNFDAARRTGFENAGMTNPEDVTFSKVDPK 38 (109)
Q Consensus 4 ~~~H~~~FD~AR~~AF~~Agm~dp~~V~FsK~dp~ 38 (109)
|+.+.+|+++|.+.+-+.-+.. .+.+.+..++
T Consensus 18 vi~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~ 49 (49)
T A0A1D2R6M5_9AR 18 VVASGDNAIKVLAAARKKFPMK---NPKLAFVPEE 49 (49)
T ss_pred EEEecCCHHHHHHHHHHHCCCC---CCEEEeCCCC
No 39
>8A57_6 50S ribosomal protein L33 1; Ribosome, Listeria monocytogenes, HflXr, 50S, antibiotic resistance; HET: SPD, GNP, MG, PUT; 2.3A {Listeria monocytogenes EGD-e}
Probab=20.19 E-value=2.3e+02 Score=17.22 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CChhhCceeeecCCCCeEEEEe
Q FD01844471_040 25 TNPEDVTFSKVDPKTGTVVEFK 46 (109)
Q Consensus 25 ~dp~~V~FsK~dp~TGTvvEFk 46 (109)
..|+.+.+.|+||....-+.|+
T Consensus 25 ~~~~kl~lkKfc~~~~kh~~~~ 46 (49)
T 8A57_6 25 ENPERIELKKYCPRLRRVTLHR 46 (49)
T ss_dssp TCCSCCEEEEEETTTTEEEEEE
T ss_pred CCccceeEEEeCccCCceeeEE