Query         FD01848538_01952 RHS repeat family protein
Match_columns 72
No_of_seqs    109 out of 148
Neff          5.47699
Searched_HMMs 86581
Date          Tue Feb 27 20:54:02 2024
Command       hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2464162.hhr -oa3m ../results/2464162.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf 
 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF14076.10 ; DUF4258 ; Domain   98.4 4.2E-06 4.9E-11   46.9   6.0   58    4-65      1-74  (75)
  2 PF12106.12 ; Colicin_E5 ; Coli  95.6    0.35   4E-06   28.2   7.8   67    2-72      3-77  (82)
  3 PF04365.17 ; BrnT_toxin ; Ribo  95.1    0.48 5.6E-06   27.1   7.0   64    4-71      1-79  (79)
  4 3U97_A Ribonuclease toxin BrnT  94.8    0.18   2E-06   32.4   4.8   62    4-69     38-109 (114)
  5 2FHZ_B Colicin-E5; Protein-Pro  91.4     1.7 1.9E-05   27.6   5.4   59    9-72     19-94  (108)
  6 7VD7_A toxin; Toxin-Antitoxin   89.7     4.1 4.8E-05   24.0   5.7   61    4-68      6-84  (94)
  7 5D0O_E Outer membrane protein   89.6     4.9 5.7E-05   24.4   6.2   53   20-72     49-112 (123)
  8 4DM5_A Osmotically inducible l  88.7       7 8.1E-05   24.8   7.8   60    4-68     16-84  (103)
  9 2YH9_A SMALL PROTEIN A; LIPOPR  86.8     7.5 8.7E-05   23.1   6.8   64    4-72      5-79  (88)
 10 5EKQ_E Outer membrane protein   83.5      11 0.00013   22.2   6.3   53   20-72     30-93  (94)
 11 5I4Q_A Contact-dependent inhib  80.1      19 0.00022   22.5   6.1   57    4-62     24-83  (92)
 12 PF10715.13 ; REGB_T4 ; T4-page  78.9     3.7 4.3E-05   29.4   2.4   25    4-32     44-68  (150)
 13 2HX6_A Ribonuclease; alpha/bet  78.5       4 4.6E-05   29.3   2.5   25    4-32     45-69  (153)
 14 5WAM_B Outer membrane protein   77.0      24 0.00027   21.9   6.2   59    4-68     22-91  (108)
 15 PF20132.3 ; DUF6522 ; Family o  75.9      16 0.00018   23.4   4.4   44   20-63     22-75  (87)
 16 PF18810.5 ; PBECR2 ; phage-Bar  69.1      31 0.00035   21.9   4.6   52   17-68     42-109 (132)
 17 7JRK_A Outer membrane protein   68.0      61  0.0007   22.8   7.4   65    2-71     14-89  (154)
 18 PF07467.15 ; BLIP ; Beta-lacta  67.7      42 0.00049   20.9   5.0   49   13-65      8-61  (121)
 19 PF04355.17 ; SmpA_OmlA ; SmpA   65.6      31 0.00036   18.6   5.2   48   11-62     10-68  (71)
 20 PF12554.12 ; MOZART1 ; Mitotic  63.3      26  0.0003   20.2   3.1   26    2-31     16-44  (47)
 21 2PXG_A Outer membrane protein;  60.5      57 0.00066   20.5   4.7   48   13-65     26-85  (118)
 22 7TXX_A BA5; Bam complex, outer  56.3      82 0.00095   20.4   7.1   63    4-71     36-115 (147)
 23 PF17510.6 ; GP44 ; Gene produc  50.4      55 0.00064   22.5   3.5   26   42-68     43-70  (108)
 24 8GZU_61 NADH dehydrogenase [ub  48.4 1.3E+02  0.0015   24.3   5.5   60    3-70    121-185 (318)
 25 PF07504.17 ; FTP ; Fungalysin/  48.1      59 0.00068   16.3   3.8   26   42-67     25-50  (51)
 26 3GMX_A BLP; 2-layer alpha/beta  47.8 1.2E+02  0.0014   19.8   5.7   48   12-63     11-63  (154)
 27 PF03849.18 ; Tfb2 ; Transcript  43.8      50 0.00057   24.5   2.7   25    4-32    326-350 (354)
 28 6L81_B Mitotic-spindle organiz  42.0      85 0.00099   20.5   3.3   26    2-31     40-68  (85)
 29 7PC1_A StbA; Plasmid conjugati  40.4      61  0.0007   19.0   2.3   19    9-31     30-48  (72)
 30 5UDO_D A118 serine integrase;   38.0      93  0.0011   21.8   3.2   37    1-37     53-89  (328)
 31 3GMV_X Beta-lactamase inhibito  37.8 1.8E+02  0.0021   19.0   5.7   49   11-63      9-65  (156)
 32 4HDE_A SCO1/SenC family lipopr  35.7 1.3E+02  0.0015   17.6   3.3   25   42-66    127-151 (170)
 33 6L80_D Mitotic-spindle organiz  35.3 1.2E+02  0.0014   20.5   3.3   26    2-31     57-85  (100)
 34 5IMF_A Bacterioferritin comigr  35.3   1E+02  0.0012   18.1   2.7   16   51-66    124-139 (160)
 35 PF11429.12 ; Colicin_D ; Colic  35.2 1.3E+02  0.0015   16.5   6.5   46   23-68     28-79  (88)
 36 4EVM_A Thioredoxin family prot  35.0      93  0.0011   17.3   2.4   16   51-66    107-122 (138)
 37 6B9X_B Ragulator complex prote  34.3 1.5E+02  0.0017   17.7   3.4   24   48-71     19-42  (126)
 38 PF11399.12 ; DUF3192 ; Protein  33.9 1.7E+02  0.0019   17.4   5.5   53    4-62     26-95  (104)
 39 3ME8_A Putative uncharacterize  33.3 1.5E+02  0.0018   18.1   3.4   21   51-71    129-149 (170)
 40 6HY0_M Major Outer Capsid Prot  32.5 1.1E+02  0.0013   21.6   2.9   24    9-36     28-51  (149)
 41 8CWS_B F4132-2 Chain B; DE NOV  32.4   1E+02  0.0012   19.6   2.4   19    9-31     21-39  (69)
 42 2LJA_A Putative thiol-disulfid  32.4 1.3E+02  0.0015   17.8   2.9   21   51-71    111-131 (152)
 43 6N5U_A Protein SCO1 homolog 1,  32.3 1.7E+02   0.002   17.1   3.6   27   40-66    123-149 (170)
 44 7YH1_B Roadblock/LC7 domain pr  32.1 1.3E+02  0.0015   17.4   2.8   24   48-71     19-42  (117)
 45 7BQB_A NF6; de novo designed p  32.0      79 0.00091   21.4   2.0   14   48-61     40-53  (106)
 46 3QDR_B Colicin-A; ColA, TolA,   32.0 1.1E+02  0.0013   19.1   2.6   23   40-62      2-24  (63)
 47 PF13778.10 ; DUF4174 ; Domain   31.9 1.4E+02  0.0016   17.1   2.9   18   51-68     76-93  (112)
 48 4GRF_A Putative thiol-disulfid  31.8 1.4E+02  0.0016   17.4   2.9   19   51-69    112-130 (152)
 49 PF08534.14 ; Redoxin ; Redoxin  31.6 1.6E+02  0.0019   16.6   3.2   19   51-69    108-126 (135)
 50 1XZO_A Hypothetical protein yp  31.5 1.3E+02  0.0015   18.0   2.7   16   51-66    138-153 (174)
 51 3DRN_B Peroxiredoxin, bacterio  31.4 1.3E+02  0.0015   18.1   2.8   16   51-66    113-128 (161)
 52 6L7R_B Mozart1; gamma tubulin   30.9 1.6E+02  0.0019   19.3   3.3   26    2-31     32-60  (86)
 53 PF19416.3 ; Astro_VPg ; Astrov  30.5 1.5E+02  0.0017   19.8   3.1   24    4-31     34-57  (95)
 54 2FY6_A Peptide methionine sulf  30.5 1.4E+02  0.0016   17.0   2.7   16   51-66    109-124 (143)
 55 4NMU_B Thiol-disulfide oxidore  30.4 1.5E+02  0.0018   17.2   2.9   16   51-66    115-130 (147)
 56 3HCZ_A Possible thiol-disulfid  30.3 1.3E+02  0.0015   17.4   2.6   15   51-65    114-128 (148)
 57 3IXR_A Bacterioferritin comigr  30.1 1.3E+02  0.0015   18.9   2.7   16   51-66    143-158 (179)
 58 1WE0_B alkyl hydroperoxide red  30.0 1.7E+02  0.0019   18.0   3.2   19   51-69    121-139 (187)
 59 PF04322.16 ; DUF473 ; Protein   29.9 1.1E+02  0.0012   21.2   2.4   19   20-38      8-26  (118)
 60 4G2E_A Peroxiredoxin; redox pr  29.8 1.9E+02  0.0022   16.9   3.4   22   51-72    121-142 (157)
 61 2LUS_A Thioredoxion; Cr-TRP16,  29.4 1.2E+02  0.0014   17.5   2.4   18   51-68    111-128 (143)
 62 6VPD_A Glutathione peroxidase;  28.8 1.4E+02  0.0016   18.2   2.6   16   51-66    156-171 (192)
 63 PF21434.1 ; TerS_N ; Phage G20  28.7 2.1E+02  0.0024   16.9   3.5   29    3-31     15-43  (50)
 64 2P31_A Glutathione peroxidase   28.6 1.5E+02  0.0018   18.3   2.8   18   51-68    149-166 (181)
 65 2MT4_A Transcription terminati  28.4      54 0.00062   21.2   0.8   44   18-65     15-59  (124)
 66 PF03698.17 ; UPF0180 ; Unchara  28.4   1E+02  0.0012   18.8   2.0   14   19-32     63-76  (77)
 67 2KWP_A Transcription elongatio  28.0      62 0.00071   21.0   1.0   44   18-65     15-59  (129)
 68 7UR8_A 170_h_ob; DE NOVO DESIG  27.9 1.4E+02  0.0016   18.8   2.4   15   53-67     50-64  (72)
 69 2R37_B Glutathione peroxidase   27.9 1.5E+02  0.0017   20.3   2.9   18   51-68    161-178 (207)
 70 PF12244.12 ; DUF3606 ; Protein  27.7 1.1E+02  0.0012   17.1   1.8   12   20-31     29-40  (53)
 71 2B1L_B Thiol:disulfide interch  27.7 1.8E+02  0.0021   16.2   2.8   17   51-67     89-105 (129)
 72 3LOR_B Thiol-disulfide isomera  27.4 1.8E+02  0.0021   16.9   2.9   16   51-66    123-138 (160)
 73 2YZH_B Probable thiol peroxida  27.2 1.5E+02  0.0018   18.7   2.7   15   51-65    135-149 (171)
 74 PF13154.10 ; DUF3991 ; Protein  27.1 2.1E+02  0.0025   16.5   5.9   45   18-69      6-50  (71)
 75 2H30_A Peptide methionine sulf  27.0 1.8E+02  0.0021   17.1   2.9   17   51-67    124-140 (164)
 76 7F8M_D Robl_LC7 domain-contain  26.9 1.8E+02  0.0021   16.8   2.8   22   48-69     20-41  (120)
 77 2B5Y_A YkuV protein; Thioredox  26.7 2.2E+02  0.0025   16.4   3.1   18   51-68    113-130 (148)
 78 PF20029.3 ; DUF6436 ; Domain o  26.4 1.3E+02  0.0014   16.4   2.0   11   52-62      6-16  (59)
 79 3KIJ_C Probable glutathione pe  26.3 1.7E+02   0.002   17.8   2.7   15   51-65    138-152 (180)
 80 2BMX_A ALKYL HYDROPEROXIDASE C  25.8 2.4E+02  0.0027   17.6   3.3   21   51-71    134-154 (195)
 81 4YGT_A Uncharacterized protein  25.8 3.3E+02  0.0038   18.3   5.8   43   22-65     45-92  (160)
 82 1Y9I_C low temperature require  25.6 1.4E+02  0.0016   21.4   2.4   23    4-30     10-32  (178)
 83 1Z5Y_E Thiol:disulfide interch  25.3 1.9E+02  0.0022   17.0   2.8   16   51-66    103-118 (149)
 84 4PQ1_A Putative electron trans  25.2 2.4E+02  0.0027   16.5   3.1   18   51-68    127-144 (158)
 85 7WET_A Peroxiredoxin-1; Comple  25.1 2.1E+02  0.0024   17.0   2.9   16   51-66    129-144 (175)
 86 3P7X_C Probable thiol peroxida  25.0 1.8E+02  0.0021   17.6   2.6   15   51-65    131-145 (166)
 87 PF16816.9 ; DotD ; DotD protei  24.9   2E+02  0.0023   19.1   3.0   18   48-65    105-122 (123)
 88 PF18039.5 ; UBA_6 ; UBA-like d  24.9 1.6E+02  0.0018   16.2   2.2   27    3-30     12-38  (42)
 89 PF20317.2 ; HTH_60 ; Helix-tur  24.8 2.1E+02  0.0024   19.7   3.1   29    3-37     88-116 (140)
 90 3EUR_A uncharacterized protein  24.8 1.3E+02  0.0016   17.5   2.0   12   51-62    116-127 (142)
 91 3IA1_B Thio-disulfide isomeras  24.8   2E+02  0.0023   17.0   2.8   17   51-67    112-128 (154)
 92 2LS5_A Uncharacterized protein  24.7 1.9E+02  0.0022   17.0   2.7   16   51-66    117-132 (159)
 93 PF09695.14 ; YtfJ_HI0045 ; Bac  24.4 2.1E+02  0.0024   17.5   2.8   16   51-66    126-141 (159)
 94 PF20452.2 ; Calmod_bind_C ; Ca  24.0 2.3E+02  0.0026   15.7   3.5   21   44-64      3-23  (60)
 95 7CT3_A Mutual gliding motility  23.9   2E+02  0.0023   16.8   2.6   20   48-67     16-35  (120)
 96 1LU4_A SOLUBLE SECRETED ANTIGE  23.6 2.2E+02  0.0025   16.0   2.7   15   51-65    102-116 (136)
 97 6B87_B TMHC2_E; De novo design  23.2 1.7E+02   0.002   20.0   2.4   19    9-31     45-63  (111)
 98 PF10210.13 ; MRP-S32 ; Mitocho  22.8 1.7E+02  0.0019   19.1   2.3   13   53-65      3-15  (96)
 99 3EYT_B uncharacterized protein  22.6 2.4E+02  0.0027   16.4   2.8   16   51-66    120-135 (158)
100 4JE1_B Probable thiol peroxida  22.5 2.4E+02  0.0027   17.5   2.9   16   51-66    142-157 (175)
101 5C04_B Putative peroxiredoxin   22.5 2.2E+02  0.0025   16.6   2.6   17   51-67    118-134 (153)
102 1V74_A Colicin D; colicin D -   22.4 2.5E+02  0.0029   15.7   6.3   46   23-68     41-92  (107)
103 2F9S_A Thiol-disulfide oxidore  22.3 2.8E+02  0.0032   16.7   3.1   18   51-68    106-123 (151)
104 1JFU_B THIOL:DISULFIDE INTERCH  22.3 2.4E+02  0.0027   17.1   2.8   15   51-65    146-160 (186)
105 3ZL5_J PEROXIREDOXIN I; OXIDOR  22.2 2.8E+02  0.0033   18.2   3.3   20   51-70    162-181 (222)
106 2M72_A Uncharacterized thiored  22.1 2.9E+02  0.0034   16.3   3.1   21   51-71    114-134 (156)
107 6NU2_a 39S ribosomal protein L  21.9 2.1E+02  0.0024   19.0   2.6   16   50-65     12-27  (108)
108 4O5R_D AhpC component, subunit  21.9 3.1E+02  0.0036   16.6   3.4   22   51-72    121-142 (187)
109 2N5J_A Ribonuclease ZC3H12A; R  21.9   2E+02  0.0023   16.5   2.2   27    3-30     19-45  (49)
110 5Y63_E Alkyl hydroperoxide red  21.8 2.7E+02  0.0031   17.0   3.0   17   51-67    132-148 (183)
111 2B7K_C SCO1 protein; Metalloch  21.7 3.3E+02  0.0038   16.8   3.9   25   41-65    137-161 (200)
112 5ENU_B Alkyl hydroperoxide red  21.7 2.6E+02   0.003   16.8   2.8   17   51-67    128-144 (161)
113 3LEQ_A uncharacterized protein  21.6 2.4E+02  0.0028   16.4   2.7   20   48-67     18-37  (126)
114 4LLR_J Tryparedoxin peroxidase  21.3 2.6E+02   0.003   17.4   2.9   16   51-66    129-144 (197)
115 3ADY_A DotD; 3-layer(bab) sand  21.1 2.5E+02  0.0029   19.3   3.0   18   48-65    125-142 (148)
116 1LY1_A polynucleotide kinase;   21.0   3E+02  0.0035   16.0   3.1   62    9-72    120-181 (181)
117 1PSQ_A probable thiol peroxida  20.8 3.2E+02  0.0037   16.3   3.4   21   51-71    128-148 (163)
118 PF20003.3 ; fvmX5 ; FtsH terna  20.8 5.3E+02  0.0062   18.8   5.3   40   24-64     39-80  (188)
119 2L5O_A Putative thioredoxin; S  20.7   3E+02  0.0035   16.0   3.0   18   51-68    109-126 (153)
120 8AO0_A Photoactive yellow prot  20.6   3E+02  0.0035   16.1   3.0   19   49-67      1-19  (112)
121 PF00578.25 ; AhpC-TSA ; AhpC/T  20.5 1.9E+02  0.0023   16.2   2.1   12   51-62    114-125 (127)
122 1RFZ_D Hypothetical protein AP  20.5 1.8E+02   0.002   20.4   2.2   18    9-30     17-34  (168)
123 4KCE_A Peroxidoxin; Thioredoxi  20.3 2.5E+02  0.0028   18.1   2.7   15   51-65    146-160 (213)
124 4KCE_B Peroxidoxin; Thioredoxi  20.3 2.5E+02  0.0028   18.1   2.7   15   51-65    146-160 (213)
125 4WBJ_A Blr1131 protein; copper  20.3 3.1E+02  0.0036   15.9   4.0   28   41-68    123-150 (164)
126 4WBJ_B Blr1131 protein; copper  20.3 3.1E+02  0.0036   15.9   4.0   28   41-68    123-150 (164)
127 3HDC_A Thioredoxin family prot  20.2 2.9E+02  0.0033   16.5   2.8   19   51-69    118-136 (158)
128 4GQC_D Thiol peroxidase; CXXXX  20.2 2.8E+02  0.0033   16.4   2.8   16   51-66    123-138 (164)
129 3KCM_D Thioredoxin family prot  20.1 3.1E+02  0.0036   16.2   2.9   16   51-66    109-124 (154)
130 PF04461.17 ; DUF520 ; Protein   20.1 1.1E+02  0.0013   22.1   1.2   48   21-71      9-56  (161)
131 1Q98_A Thiol Peroxidase; struc  20.1   3E+02  0.0035   16.5   2.9   16   51-66    132-147 (165)
132 4XRA_E Alkyl hydroperoxide red  20.0 3.5E+02   0.004   16.3   3.2   19   51-69    120-138 (186)
No 1
>PF14076.10 ; DUF4258 ; Domain of unknown function (DUF4258)
Probab=98.36  E-value=4.2e-06  Score=46.88  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=41.6  Template_Neff=10.800
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec----CCCcEE-----EECCCEEEEECCCC-------CEEEEe
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN----ANGTIK-----YQGKRATVVLNQDG-------KVVTVF   65 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~----~~~s~~-----y~g~~atVVlN~~g-------~vVT~~   65 (72)
                      +|.|+.+|+.    +||++.++|.++|.+|..+...    ....+.     +.|....||+..+.       .|||+|
T Consensus         1 ~t~Ha~~r~~----~r~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~viT~~   74 (75)
T D5BWQ5_NITHN/3    1 WSKHARKRMR----ERRITTRQVLDVLSKGKIIEGPVRGTTGDWECTLERFVAGDNVVVVVAIETDSAGQPVIIVTTY   74 (75)
T ss_pred             CCHHHHHHHH----hCCCCHHHHHHHHhcCceeecccCCCCCCEEEEEEEcCCCCEEEEEEEEEeCCCCCeEEEEEEe
Confidence            5899999999    9999999999999999965442    112222     23455667766542       677776
No 2
>PF12106.12 ; Colicin_E5 ; Colicin E5 ribonuclease domain
Probab=95.59  E-value=0.35  Score=28.23  Aligned_cols=67  Identities=22%  Similarity=0.201  Sum_probs=0.0  Template_Neff=9.700
Q ss_pred             CcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec-----CCCcEEEECC-CEEEEECCCC-CEEEEeec-CCCCC
Q FD01848538_019    2 TGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN-----ANGTIKYQGK-RATVVLNQDG-KVVTVFGK-SRGPE   72 (72)
Q Consensus         2 tg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~-----~~~s~~y~g~-~atVVlN~~g-~vVT~~~~-~~~~~   72 (72)
                      ..+.....++|.    .||.+.+.|.+++.+|......     +.....|.-+ ...||+|... ++|.+... +...|
T Consensus         3 ~~~~~k~~~q~~----~rGw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~vv~~~~tg~iiqv~~~~~~~~w   77 (82)
T M1MKY3_9CLOT/9    3 TKSTQKLSNQMT----QRGWTESTVRDIVSKPYTTRASINKATGNSATVYYNKAGGYVIIDDITKSVVQVSDNINPSTW   77 (82)
T ss_pred             ccccHHHHHhhh----hcCCCHHHHHHHhhCCCeeeceecccCCCcceEEEcCCCcEEEEeCCCCCEEEccCCCCCCCC
No 3
>PF04365.17 ; BrnT_toxin ; Ribonuclease toxin, BrnT, of type II toxin-antitoxin system
Probab=95.13  E-value=0.48  Score=27.10  Aligned_cols=64  Identities=14%  Similarity=0.308  Sum_probs=0.0  Template_Neff=10.100
Q ss_pred             ccHH-HHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec------CCCcEEEEC---CCEEEEE----CCCC-CEEEEeecC
Q FD01848538_019    4 YTRH-GLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN------ANGTIKYQG---KRATVVL----NQDG-KVVTVFGKS   68 (72)
Q Consensus         4 ~t~H-gl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~------~~~s~~y~g---~~atVVl----N~~g-~vVT~~~~~   68 (72)
                      +..+ ....+.    .+||+.+++.+++.+|..+...      +...+.++|   ...-+|+    ..+. .+||+|..+
T Consensus         1 wd~~k~~~~~~----khgi~~~ev~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~gr~l~vv~~~~~~~~~~iisa~~~~   76 (79)
T B6INL0_RHOCS/5    1 WDRQKAEANRR----KHGVCFGDAIPALEDPDRLERIDDRFAYGEERVQTIGAAAGGILFVVTTVNEEETCRILSARRAT   76 (79)
T ss_pred             CCHHHHHHHHH----HhCCCHHHHHHHHhCCCceEEEccccccCCeeEEEEEEeCCeEEEEEEEEecCCEEEEEEeeeCC
Q ss_pred             CCC
Q FD01848538_019   69 RGP   71 (72)
Q Consensus        69 ~~~   71 (72)
                      ...
T Consensus        77 ~~e   79 (79)
T B6INL0_RHOCS/5   77 RDE   79 (79)
T ss_pred             CCC
No 4
>3U97_A Ribonuclease toxin BrnT; RNAse Sa/RelE small ribonuclease fold, ribonuclease, BrnA, HYDROLASE; HET: MSE; 1.102A {Brucella abortus}
Probab=94.77  E-value=0.18  Score=32.39  Aligned_cols=62  Identities=13%  Similarity=0.199  Sum_probs=0.0  Template_Neff=8.300
Q ss_pred             ccHHH-HHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEE-----EEECCCC----CEEEEeecCC
Q FD01848538_019    4 YTRHG-LNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRAT-----VVLNQDG----KVVTVFGKSR   69 (72)
Q Consensus         4 ~t~Hg-l~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~at-----VVlN~~g----~vVT~~~~~~   69 (72)
                      ++.|. ...+.    .+||+.+++.+++.+|..+.......+..+|.-..     ||+.+.+    .+||+|..+.
T Consensus        38 wd~~k~~~~i~----khgIs~~ev~~~~~~~~~~~~d~e~R~~~iG~~~~gr~l~vv~~~~~~~~~riITa~~a~~  109 (114)
T 3U97_A           38 WDEPKRQTNIA----KHGLDFADLHFEFFLSAKVFPTKADRLMAIGEFNGLIIIAVIFKPVGSEALSVISMRSASQ  109 (114)
T ss_dssp             CCHHHHHHHHH----HHSCCGGGCCHHHHHTSEEEEEETTEEEEEEEETTTEEEEEEEEEETTTEEEEEEEEECCC
T ss_pred             cChHHHHHHHH----HhCCCHHHHHHHhhcccEEEeCCCceEEEEEEECCeEEEEEEEEEcCCCeEEEEEceeCCH
No 5
>2FHZ_B Colicin-E5; Protein-Protein Complex, Inhibition of Ribonuclease, IMMUNE SYSTEM, HYDROLASE; 1.15A {Escherichia coli} SCOP: d.243.1.2
Probab=91.43  E-value=1.7  Score=27.60  Aligned_cols=59  Identities=19%  Similarity=0.162  Sum_probs=0.0  Template_Neff=8.400
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHhCC----------------eEEeecCCCcEEEECCCEEEEECCCC-CEEEEeecCCCC
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQNP----------------KKIIENANGTIKYQGKRATVVLNQDG-KVVTVFGKSRGP   71 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~nP----------------~~v~~~~~~s~~y~g~~atVVlN~~g-~vVT~~~~~~~~   71 (72)
                      ..+|.    .||.+.+.|.+++.+|                ..+.. +.....|......||+|... +++-+-..+...
T Consensus        19 ~~q~~----~rGwt~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~at~Y~~~g~~Vv~~d~tg~ivqvs~~~~~~   93 (108)
T 2FHZ_B           19 RGQMP----ERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGR-NDPATVYGSPGKYVVVNDRTGEVTQISDKTDPG   93 (108)
T ss_dssp             HHHGG----GTTCCHHHHHHHHHTCEEEEEEEEECGGGSTTTTCCE-EEEEEEEEETTEEEEEETTTCBEEEECCTTCTT
T ss_pred             hhcCc----cCCCCHHHHHHHHhcCCcceeecCCCCCCCCCCcCCC-CCCccEeCCCCCEEEEeCCCCCEEEecCCCCCC
Q ss_pred             C
Q FD01848538_019   72 E   72 (72)
Q Consensus        72 ~   72 (72)
                      |
T Consensus        94 w   94 (108)
T 2FHZ_B           94 W   94 (108)
T ss_dssp             C
T ss_pred             C
No 6
>7VD7_A toxin; Toxin-Antitoxin complex Ribonuclease, TOXIN, TOXIN-ANTITOXIN complex; 1.43A {Salmonella typhimurium}
Probab=89.66  E-value=4.1  Score=24.02  Aligned_cols=61  Identities=8%  Similarity=0.090  Sum_probs=0.0  Template_Neff=10.100
Q ss_pred             ccHH-HHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec-----CCCcEEEE-----CCCEEEEECCCC-------CEEEEe
Q FD01848538_019    4 YTRH-GLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN-----ANGTIKYQ-----GKRATVVLNQDG-------KVVTVF   65 (72)
Q Consensus         4 ~t~H-gl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~-----~~~s~~y~-----g~~atVVlN~~g-------~vVT~~   65 (72)
                      ++.+ ......    .+||+.+++.+++.+|..+...     +...+..+     |.--.||+-+.+       .+||+|
T Consensus         6 wd~~k~~~~~~----khgi~~~ev~~~~~~~~~~~~~~~~~~~~~r~~~iG~~~~gr~l~vv~~~~~~~~~~~~~iita~   81 (94)
T 7VD7_A            6 WDANKAKSNLR----KHGVRFEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFDVIRIISAR   81 (94)
T ss_dssp             CCHHHHHHHHH----HHSCCHHHHGGGGGSTTCEEEEEEEETTEEEEEEEEEETTTEEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             cChHHHHHHHH----HhCCCHHHHHHHhCCCcceeecchhccCChheEEEEEEcCeEEEEEEEEeccccCCcEEEEEEce
Q ss_pred             ecC
Q FD01848538_019   66 GKS   68 (72)
Q Consensus        66 ~~~   68 (72)
                      +.+
T Consensus        82 ~a~   84 (94)
T 7VD7_A           82 KAD   84 (94)
T ss_dssp             ECC
T ss_pred             eCC
No 7
>5D0O_E Outer membrane protein assembly factor BamE; E.coli, Bacterial outer membrane beta barrel assembly machinery, outer membrane biogenesis, protein transport., PROTEIN TRANSPORT; 2.9A {Escherichia coli}
Probab=89.57  E-value=4.9  Score=24.43  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=0.0  Template_Neff=10.700
Q ss_pred             CCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019   20 GVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus        20 GVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      |.|.++|++.+-.|..+...+...+.|....           ..|.++.+|+|+...-.+...+
T Consensus        49 G~t~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~g~V~~~~~~~~~~~  112 (123)
T 5D0O_E           49 GMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG  112 (123)
T ss_dssp             SCBHHHHHHHHCCCSBCCCSSSCEEEEEEEEECTTTCCEEEEEEEEECTTSBEEEEEEECCCC-
T ss_pred             CCCHHHHHHHHCCCCccCCCCCceEEEEEeeCCCCCCceEEEEEEEECCCCeEEEEEeCCCCCC
No 8
>4DM5_A Osmotically inducible lipoprotein OsmE; lipoprotein, UNKNOWN FUNCTION; HET: MSE; 1.5A {Pseudomonas aeruginosa PAO1}
Probab=88.70  E-value=7  Score=24.81  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=0.0  Template_Neff=8.000
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEee-c--CCCcEEEECCC------EEEEECCCCCEEEEeecC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIE-N--ANGTIKYQGKR------ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~-~--~~~s~~y~g~~------atVVlN~~g~vVT~~~~~   68 (72)
                      ++...+++ +    ..|.+.++|+++|-.|..+.. .  +...+.|.-..      -.|.+|++|+|+......
T Consensus        16 ~~~~~~~~-i----~~GmT~~eV~~ilG~P~~~~~~~~~~~~~w~Y~~~~~~~~~~~~V~FD~~g~V~~~~~~~   84 (103)
T 4DM5_A           16 RNEPLVKD-V----EKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLS   84 (103)
T ss_dssp             TTSHHHHT-C----CTTCBHHHHHHHHCSCSEEEECSSSSSEEEEEEEEETTEEEEEEEEECTTSBEEEEESSC
T ss_pred             CCHHHHHh-c----CCCCCHHHHHHHhCCCceeeeccCCCCcEEEEEECCCCCeecEEEEECCCCcEEEEEECC
No 9
>2YH9_A SMALL PROTEIN A; LIPOPROTEIN, 3D DOMAIN SWAP, MEMBRANE PROTEIN; HET: MSE; 1.8A {ESCHERICHIA COLI}
Probab=86.83  E-value=7.5  Score=23.09  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=0.0  Template_Neff=9.400
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      ++.-.++++.     -|.+.++|++.|-.|..+...+...+.|.-..           ..|.++++|+++.........+
T Consensus         5 ~~~~~~~~i~-----~G~t~~eV~~~lG~P~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~v~Fd~~g~v~~~~~~~~~~~   79 (88)
T 2YH9_A            5 LTANDVSKIR-----VGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG   79 (88)
T ss_dssp             -----CTTCC-----TTCBHHHHHHHHCSCSEECCTTCSEEEEECCSCTTCCSSSCCEEEEEECTTSBEEEEEEEC----
T ss_pred             CCHHHHhcCC-----CCCCHHHHHHHhCCCceeCCCCCCeEEEEEEeecCCCCceEEEEEEEECCCCeEEEEEEcccccC
No 10
>5EKQ_E Outer membrane protein assembly factor BamE; membrane protein, insertase, beta-barrel, outer membrane protein; 3.392A {Escherichia coli (strain K12)}
Probab=83.53  E-value=11  Score=22.22  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=0.0  Template_Neff=10.000
Q ss_pred             CCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019   20 GVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus        20 GVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      |.+.++|++++-.|..+...+...+.|....           ..|.++++|+++..+-......
T Consensus        30 Gmt~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~g~v~~~~~~~~~~~   93 (94)
T 5EKQ_E           30 GMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG   93 (94)
T ss_dssp             TCCSTTTTTSSCCCSEECCSSSCEEEEEEEEECTTTCCEEEEEEEEECTTSCEEEEEEECSCC-
T ss_pred             CCCHHHHHHHhCCCceeCCCCCceEEEEEEEecCCCCceEEEEEEEECCCCcEEEEEECcccCC
No 11
>5I4Q_A Contact-dependent inhibitor A; toxin, antitoxin, elongation factor, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Structure-Function Analysis of; HET: MSE; 2.35A {Escherichia coli}
Probab=80.08  E-value=19  Score=22.51  Aligned_cols=57  Identities=16%  Similarity=0.320  Sum_probs=0.0  Template_Neff=7.800
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEE-ee-c-CCCcEEEECCCEEEEECCCCCEE
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKI-IE-N-ANGTIKYQGKRATVVLNQDGKVV   62 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v-~~-~-~~~s~~y~g~~atVVlN~~g~vV   62 (72)
                      |+.-.+.+|.  +.+|-+....+.++++....+ .. + ..+.++|.+-...|+.|+....|
T Consensus        24 fs~~~~~~m~--~~~R~vP~~il~~~i~~g~~~~~dp~g~~g~~~y~~~~lev~~~~~~~ti   83 (92)
T 5I4Q_A           24 FSKSYYEKLW--EQGRPAPFVQAREVLNSNPKIEPDPRGAPGYLRYEGAGLEMIYNPKTGQV   83 (92)
T ss_dssp             EEHHHHHHHH--HTTCCCHHHHHHHHHTSCCEEEECTTCCTTCEEEEETTEEEEEETTTTEE
T ss_pred             ccHHHHHHHH--hCCCCChHHHHHHHHhcCCCCCCCCCCCCceeeeecCeeEEEEeCCCCeE
No 12
>PF10715.13 ; REGB_T4 ; T4-page Endoribonuclease RegB
Probab=78.91  E-value=3.7  Score=29.40  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=0.0  Template_Neff=3.000
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN   32 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n   32 (72)
                      ||.|-+||++    +|.+..+.+.+.+++
T Consensus        44 yS~HllDR~I----qReIde~yVf~Lf~k   68 (150)
T REGB_BPT4/2-15   44 YSQHLLDRAI----QREIDETYVFELFHK   68 (150)
T ss_pred             echhHHHHHH----HhcCCHHHHHHHHHH
No 13
>2HX6_A Ribonuclease; alpha/beta fold, HYDROLASE; NMR {Enterobacteria phage T4}
Probab=78.55  E-value=4  Score=29.34  Aligned_cols=25  Identities=16%  Similarity=0.371  Sum_probs=0.0  Template_Neff=3.000
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN   32 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n   32 (72)
                      ||.|-+||+|    +|.+..+.+.+.+++
T Consensus        45 yS~HllDR~I----qReIde~yVf~Lf~k   69 (153)
T 2HX6_A           45 YSQALLDRAI----QREIDETYVFELFHK   69 (153)
T ss_dssp             CCHHHHHHHH----HTSTTCCHHHHHHHH
T ss_pred             ecHHHHHHHH----HhcCCHHHHHHHHHH
No 14
>5WAM_B Outer membrane protein assembly factor BamE; beta-barrel assembly machinery, BAM complex, lipoprotein, MEMBRANE PROTEIN; 2.45A {Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)}
Probab=76.99  E-value=24  Score=21.93  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=0.0  Template_Neff=9.200
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~   68 (72)
                      ++...+++..     .|.+.++|+++|-.|..........+.|.-..           ..|+++ +|+++......
T Consensus        22 ~~~~~~~~l~-----~Gmt~~eV~~~lG~P~~~~~~~~~~w~Y~~~~~~~~~~~~~~~~~v~F~-~g~v~~~~~~~   91 (108)
T 5WAM_B           22 LEPRAVAALR-----PGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFE-NGVLVRTEGDA   91 (108)
T ss_dssp             CCHHHHTTCC-----TTCBHHHHHHHHCCCSCCSSTTSSEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEESHH
T ss_pred             CCHHHHHhCC-----CCCCHHHHHHHhCCCceecCCCCCeEEEEEEeecCCcceEEEEEEEEEe-CCEEEEEEecc
No 15
>PF20132.3 ; DUF6522 ; Family of unknown function (DUF6522)
Probab=75.88  E-value=16  Score=23.41  Aligned_cols=44  Identities=11%  Similarity=0.131  Sum_probs=0.0  Template_Neff=6.100
Q ss_pred             CCCHHHHHHHHhCCeEEee--c--------CCCcEEEECCCEEEEECCCCCEEE
Q FD01848538_019   20 GVNIKDMLDAVQNPKKIIE--N--------ANGTIKYQGKRATVVLNQDGKVVT   63 (72)
Q Consensus        20 GVs~~~I~dav~nP~~v~~--~--------~~~s~~y~g~~atVVlN~~g~vVT   63 (72)
                      |++++++...++.......  +        .+-+++|-.....++++++|+++.
T Consensus        22 gl~~~~l~~~mr~G~It~~~E~G~ged~Gr~Rltfr~~~r~~r~~vd~~G~vl~   75 (87)
T A0A2R4MJ82_9HY   22 NVPPEQVQRLMRENKITSMCETGVGPDTDRHRVTFRHGLALVQLTIDESGEVLS   75 (87)
T ss_pred             CCCHHHHHHHHHCCCCeEEEEEecCCCCCeEEEEEEECCeEEEEEECCCCCEEE
No 16
>PF18810.5 ; PBECR2 ; phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2
Probab=69.07  E-value=31  Score=21.91  Aligned_cols=52  Identities=13%  Similarity=0.273  Sum_probs=0.0  Template_Neff=9.700
Q ss_pred             CCCCCCHHHHHHHHhCCeEEeec-CCCc--------EEEE----CCCEEEEECCCC---CEEEEeecC
Q FD01848538_019   17 GGKGVNIKDMLDAVQNPKKIIEN-ANGT--------IKYQ----GKRATVVLNQDG---KVVTVFGKS   68 (72)
Q Consensus        17 ~~rGVs~~~I~dav~nP~~v~~~-~~~s--------~~y~----g~~atVVlN~~g---~vVT~~~~~   68 (72)
                      .+|..-...|.++|++|..|... ....        .+|+    .....||++..+   .++|+++.+
T Consensus        42 ~e~~~~~~~l~~~l~~PdeI~~~~~~~~~~~~~~~~~~y~k~~~~~~~~vvv~~~~~~~~v~t~~~~~  109 (132)
T A0A285M2N7_9HY   42 STRAPALKQLAEAIMDPDEIWVDWEWHDVRKEWILKRRYLRSAPNLAGLLVFEWSQHGWSATTAYNAA  109 (132)
T ss_pred             cccHHHHHHHHHHHhCcceeeeeeeecccCCcEEEEEEEEeEcCCceEEEEEEEeCCeEEEEEEeecc
No 17
>7JRK_A Outer membrane protein assembly factor BamE; membrane protein, BAM complex, lipoprotein.; 1.71A {Pseudomonas aeruginosa}
Probab=67.99  E-value=61  Score=22.75  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=0.0  Template_Neff=6.600
Q ss_pred             CcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCE-----------EEEECCCCCEEEEeecCCC
Q FD01848538_019    2 TGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRA-----------TVVLNQDGKVVTVFGKSRG   70 (72)
Q Consensus         2 tg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~a-----------tVVlN~~g~vVT~~~~~~~   70 (72)
                      +-++.--+++..     .|.+.++|+..|-+|.....-+...+.|.-...           .|.+|.+|+++........
T Consensus        14 ~~vt~d~i~qL~-----~GmTk~qV~~lLG~P~~~~~~~~~~W~Y~y~~~~~~~~~~~~~l~V~Fd~~G~V~~~~~~~~p   88 (154)
T 7JRK_A           14 NVVTQDMIDQLR-----PGMTRRQVRFIMGNPLIVDTFHANRWDYLYSIQPGGGRRQQERVSLFFNDSDQLAGLNGDFMP   88 (154)
T ss_dssp             CCCBHHHHHTCC-----TTCBHHHHHHHHCSCSEEEEEEEEEEEEEEBSSTTCCGGGCEEEEEEECTTSBEEEEESCCCS
T ss_pred             ccCCHHHHHhCC-----CCCCHHHHHHHHCCCCEEecCCCcEEEEEEEecCCCCCccEEEEEEEECCCCEEEEEEeCCCC
Q ss_pred             C
Q FD01848538_019   71 P   71 (72)
Q Consensus        71 ~   71 (72)
                      .
T Consensus        89 ~   89 (154)
T 7JRK_A           89 G   89 (154)
T ss_dssp             C
T ss_pred             C
No 18
>PF07467.15 ; BLIP ; Beta-lactamase inhibitor (BLIP)
Probab=67.71  E-value=42  Score=20.86  Aligned_cols=49  Identities=12%  Similarity=0.151  Sum_probs=0.0  Template_Neff=9.800
Q ss_pred             hcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----EEEEECCCCCEEEEe
Q FD01848538_019   13 IGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----ATVVLNQDGKVVTVF   65 (72)
Q Consensus        13 ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----atVVlN~~g~vVT~~   65 (72)
                      +    .-|.+.++|..+|-.|..........+.|....     ..|-++++|+++...
T Consensus         8 I----~~G~t~~~V~~~lG~p~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~gkv~~~~   61 (121)
T B5GLC0_STRCL/3    8 I----QFGMDRTLVWQLAGADQSCSDQVERIICYNNPDHYGPQGHFFFNAADKLIHKR   61 (121)
T ss_pred             C----CCCCCHHHHHHHHCCCCccCCCceEEEEECCCCCCCCeEEEEEcCCCEEEEEE
No 19
>PF04355.17 ; SmpA_OmlA ; SmpA / OmlA family
Probab=65.64  E-value=31  Score=18.55  Aligned_cols=48  Identities=13%  Similarity=0.073  Sum_probs=0.0  Template_Neff=10.900
Q ss_pred             HHhcCCCCCCCCHHHHHHHHhCCeEEee-c-CCCcEEEECCC---------EEEEECCCCCEE
Q FD01848538_019   11 QAIGRNGGKGVNIKDMLDAVQNPKKIIE-N-ANGTIKYQGKR---------ATVVLNQDGKVV   62 (72)
Q Consensus        11 r~ig~~~~rGVs~~~I~dav~nP~~v~~-~-~~~s~~y~g~~---------atVVlN~~g~vV   62 (72)
                      ..+    ..|.|.+++.+.+-.|..+.. . ....+.|....         ..|.++.++.++
T Consensus        10 ~~i----~~G~t~~ev~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~~~v~   68 (71)
T A1K8N9_AZOSB/6   10 SQL----KRGMSREQVRFVLGTPLVVDIFRSNRWDYVYRFKPGNGEPEQRVFSVFFVDDKLDH   68 (71)
T ss_pred             Hhc----cCCCCHHHHHHHHCCCeEEeCCCCCeEEEEEEeecCCCCCeEEEEEEEEeCCeeEE
No 20
>PF12554.12 ; MOZART1 ; Mitotic-spindle organizing gamma-tubulin ring associated
Probab=63.27  E-value=26  Score=20.24  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=0.0  Template_Neff=5.200
Q ss_pred             CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~   31 (72)
                      +|+++.-+.   +.+    +.||+|+++...++
T Consensus        16 tgLd~e~L~icv~L~----e~GvnPeaLA~vi~   44 (47)
T N1Q4P1_DOTSN/2   16 THLDRQSLSYCVSLI----ENGVSPESLAKVVV   44 (47)
T ss_pred             CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 21
>2PXG_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture, MEMBRANE PROTEIN; NMR {Xanthomonas axonopodis pv. citri}
Probab=60.53  E-value=57  Score=20.54  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=0.0  Template_Neff=9.200
Q ss_pred             hcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCE------------EEEECCCCCEEEEe
Q FD01848538_019   13 IGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRA------------TVVLNQDGKVVTVF   65 (72)
Q Consensus        13 ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~a------------tVVlN~~g~vVT~~   65 (72)
                      +    ..|.|.++|.+.|-.|..........+.|.-...            .|+++ +|+++...
T Consensus        26 l----~~Gmtk~eV~~~lG~P~~~~~~~~~~w~Y~~~~~~~~~~~~~~~~~~v~f~-~g~l~~~~   85 (118)
T 2PXG_A           26 L----QVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLARTEIKNFTVFFE-NEQVVRWE   85 (118)
T ss_dssp             T----CCCSCHHHHHHHHTSCCCCCTTTCCCEEEEEEETTCSSSSCEEEEEEEEES-SSSEEEEE
T ss_pred             C----CCCCCHHHHHHHhCCCCcCCCCCCCeEEEEEEEeeCCCCCcEEEEEEEEEe-CCEEEEEE
No 22
>7TXX_A BA5; Bam complex, outer membrane biogenesis, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, PROTEIN; NMR {Bartonella henselae str. Houston-1}
Probab=56.31  E-value=82  Score=20.36  Aligned_cols=63  Identities=13%  Similarity=0.216  Sum_probs=0.0  Template_Neff=9.700
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------------EEEEECCCCCEEEEee
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------------ATVVLNQDGKVVTVFG   66 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------------atVVlN~~g~vVT~~~   66 (72)
                      .+...+++..     -|.+.++|+..+-.|......+...+.|....                 ..|.+|++|+++....
T Consensus        36 ~~~~~~~~l~-----~G~t~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~v~Fd~~g~v~~~~~  110 (147)
T 7TXX_A           36 LDKNALDSIS-----IGSSQEQVILALGTPSLKTKYDNEVFYYISQTRYRGMQFMKTKIIDRKVLAIYFNKNDQVTKIAN  110 (147)
T ss_dssp             TSTTGGGGCC-----TTCBHHHHHHHHCCCSEEECSSSCEEEEECCCCSSCCTTSCCSSCCCCEEEEEEETTTEEEEEEE
T ss_pred             CCHHHHhhcC-----CCCCHHHHHHHHCCCeeEecCCCceEEEEEEEeecCCcccCCeeEEEEEEEEEECCCCeEEEEEE
Q ss_pred             cCCCC
Q FD01848538_019   67 KSRGP   71 (72)
Q Consensus        67 ~~~~~   71 (72)
                      .....
T Consensus       111 ~~~~~  115 (147)
T 7TXX_A          111 YGLQD  115 (147)
T ss_dssp             SSEET
T ss_pred             ecCCC
No 23
>PF17510.6 ; GP44 ; Gene product 44
Probab=50.40  E-value=55  Score=22.51  Aligned_cols=26  Identities=15%  Similarity=0.496  Sum_probs=0.0  Template_Neff=2.600
Q ss_pred             CcEEEEC--CCEEEEECCCCCEEEEeecC
Q FD01848538_019   42 GTIKYQG--KRATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        42 ~s~~y~g--~~atVVlN~~g~vVT~~~~~   68 (72)
                      .|.+|.|  ++|+|.+..+ ..+|.|-.+
T Consensus        43 nsVRYk~ate~Ati~~g~~-~~~slWQ~N   70 (108)
T Q5J5Q8_9CAUD/1   43 SSLRFSSASETANISLDDD-RTVCTWQMN   70 (108)
T ss_pred             cceeeecccceeEEEeCCC-CeEEEeehh
No 24
>8GZU_61 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8, mitochondrial; Electron transport chain, supercomplex, membrane protein, Tetrahymena thermophila, ELECTRON TRANSPORT; HET: FES, FMN, CU, U10, F3S, HEA, SF4, ADP, HEC, ZN, TPO, FAD, NDP, SEP, HEM; 4.18A {Tetrahymena thermophila SB210}
Probab=48.35  E-value=1.3e+02  Score=24.28  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=0.0  Template_Neff=2.100
Q ss_pred             cccHHHHHHHhcCCCCCCCCHHHHHH----HHhCCeEEeecCCCcEEEECCCEEEEECCCC-CEEEEeecCCC
Q FD01848538_019    3 GYTRHGLNQAIGRNGGKGVNIKDMLD----AVQNPKKIIENANGTIKYQGKRATVVLNQDG-KVVTVFGKSRG   70 (72)
Q Consensus         3 g~t~Hgl~r~ig~~~~rGVs~~~I~d----av~nP~~v~~~~~~s~~y~g~~atVVlN~~g-~vVT~~~~~~~   70 (72)
                      |+|..-.+++.    +-|++|++-.|    ++..++.|.  -...+.|+-.+  ||.|+.| ||--.|+...+
T Consensus       121 GlTRkEA~~I~----~lGLtP~EeVdfAYl~~N~GlDvf--Y~~Nq~yvARQ--VVTNSKGEKvEvlWp~~~~  185 (318)
T 8GZU_61         121 GITRKEAEFIT----KLGLSPQEQVDFAYIAYNIGLDIF--YFTNQMFVARQ--VVTNSKGEKVEVLWNAQCY  185 (318)
T ss_pred             CCCHHHHHHHH----hcCCChHHHhhHHHHHHHcCCeEE--EeccceeEEEE--EEeCCCCCeEEEEEecccH
No 25
>PF07504.17 ; FTP ; Fungalysin/Thermolysin Propeptide Motif
Probab=48.05  E-value=59  Score=16.27  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=0.0  Template_Neff=10.700
Q ss_pred             CcEEEECCCEEEEECCCCCEEEEeec
Q FD01848538_019   42 GTIKYQGKRATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        42 ~s~~y~g~~atVVlN~~g~vVT~~~~   67 (72)
                      ......+..+.|.++++|+++.+...
T Consensus        25 ~gi~V~~~~~~~~~~~~g~~~~~~~~   50 (51)
T H6NTM1_9BACL/1   25 RGVPVYGKYINLHLDSSKKAYAIQNQ   50 (51)
T ss_pred             CCEEEeCcEEEEEECCCCcEEEEecc
No 26
>3GMX_A BLP; 2-layer alpha/beta sandwich, PROTEIN BINDING; HET: ACT; 1.05A {Streptomyces clavuligerus} SCOP: d.98.1.0
Probab=47.84  E-value=1.2e+02  Score=19.81  Aligned_cols=48  Identities=13%  Similarity=0.185  Sum_probs=0.0  Template_Neff=9.600
Q ss_pred             HhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----EEEEECCCCCEEE
Q FD01848538_019   12 AIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----ATVVLNQDGKVVT   63 (72)
Q Consensus        12 ~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----atVVlN~~g~vVT   63 (72)
                      .|    .-|.|.++|...|-.|..+.......+.|....     ..|.++++|++++
T Consensus        11 ~I----~~G~t~~eV~~~lG~p~~~~~~~~~~y~w~~~~~~~~~i~v~f~~~~kl~~   63 (154)
T 3GMX_A           11 KI----QFGMDRTLVWQLAGADQSCSDQVERIICYNNPDHYGPQGHFFFNAADKLIH   63 (154)
T ss_dssp             HC----CTTCBHHHHHHHHTGGGTEEECSSCEEEESSSCTTSSEEEEEECTTSBEEE
T ss_pred             hc----CCCCCHHHHHHHHCCCceeeccceEEEEEeCCCCCCCeEEEEEeCCCeEEE
No 27
>PF03849.18 ; Tfb2 ; Transcription factor Tfb2
Probab=43.82  E-value=50  Score=24.54  Aligned_cols=25  Identities=16%  Similarity=0.466  Sum_probs=0.0  Template_Neff=9.900
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN   32 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n   32 (72)
                      +|.+.+.|++    ++|++.+.|++.|+.
T Consensus       326 lt~~Sv~~a~----~~G~t~~~il~fL~~  350 (354)
T R4XAU2_TAPDE/1  326 LSRHSIRKAL----DNGITADQVILFLTS  350 (354)
T ss_pred             ECHHHHHHHH----HCCCCHHHHHHHHHH
No 28
>6L81_B Mitotic-spindle organizing protein 1; gamma tubulin complex, microprotein, microtubule, TRANSLATION; 2.19650999049A {Homo sapiens}
Probab=42.00  E-value=85  Score=20.51  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=0.0  Template_Neff=4.700
Q ss_pred             CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~   31 (72)
                      ||+++.-+.   +.+    +.||+|+++-++|+
T Consensus        40 TGLd~e~L~ici~Ll----e~GvnPeALA~vI~   68 (85)
T 6L81_B           40 TGLDMETLSICVRLC----EQGINPEALSSVIK   68 (85)
T ss_dssp             CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 29
>7PC1_A StbA; Plasmid conjugation, Plasmid partition, Helix-Turn-Helix, DNA BINDING PROTEIN; HET: MSE; 1.9A {Escherichia coli K-12}
Probab=40.42  E-value=61  Score=18.99  Aligned_cols=19  Identities=16%  Similarity=0.559  Sum_probs=0.0  Template_Neff=8.400
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~   31 (72)
                      +++++    .+|+|-++|.+.|.
T Consensus        30 I~~~~----~~G~s~~~I~~~L~   48 (72)
T 7PC1_A           30 IDRQV----RAGVQHDDIVETLN   48 (72)
T ss_dssp             HHHHH----HTTCCHHHHHHHHH
T ss_pred             HHHHH----HCCCCHHHHHHHHH
No 30
>5UDO_D A118 serine integrase; site-specific recombination, coiled-coil, RECOMBINATION; 2.541A {Listeria innocua}
Probab=38.00  E-value=93  Score=21.78  Aligned_cols=37  Identities=11%  Similarity=-0.129  Sum_probs=0.0  Template_Neff=11.600
Q ss_pred             CCcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEe
Q FD01848538_019    1 ITGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKII   37 (72)
Q Consensus         1 Itg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~   37 (72)
                      +.|.+.+.+.+.+...++...+...|...|+||....
T Consensus        53 ~~g~s~~~i~~~l~~~~~~~w~~~~v~~il~n~~y~G   89 (328)
T 5UDO_D           53 EEEQSITFLQKRLKKLGFKVRTYNRYNNWLTNDLYCG   89 (328)
T ss_dssp             -------------------------------------
T ss_pred             HcCCCHHHHHHHHHHCCCCcCChhHhhHhhhCcccce
No 31
>3GMV_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, PROTEIN BINDING; HET: TAM; 1.8A {Streptomyces exfoliatus} SCOP: d.98.1.0
Probab=37.75  E-value=1.8e+02  Score=18.97  Aligned_cols=49  Identities=6%  Similarity=0.180  Sum_probs=0.0  Template_Neff=9.700
Q ss_pred             HHhcCCCCCCCCHHHHHHHHhCCeEEee-c--CCCcEEEECCC-----EEEEECCCCCEEE
Q FD01848538_019   11 QAIGRNGGKGVNIKDMLDAVQNPKKIIE-N--ANGTIKYQGKR-----ATVVLNQDGKVVT   63 (72)
Q Consensus        11 r~ig~~~~rGVs~~~I~dav~nP~~v~~-~--~~~s~~y~g~~-----atVVlN~~g~vVT   63 (72)
                      ..|    .-|.|.++|...+-.|-.+.. .  ....+.|....     ..|.++++|++++
T Consensus         9 ~~I----~~G~t~~~V~~~lG~p~~~~~~~~~~~~~~~w~~~~~~~~~~~v~f~~~gk~~~   65 (156)
T 3GMV_X            9 EQI----QFGMTFDEVWEIGGGEAACDTGGVIGDSILCFTESGDYAPYGGFSFTDEGELWS   65 (156)
T ss_dssp             HHC----CTTCBHHHHHHHHTHHHHEECSGGGTTSEEEESSSSTTCCEEEEEECTTSBEEE
T ss_pred             HhC----CCCCCHHHHHHHhCCCceeeecCCcceEEEEEeeCCCCcCeEEEEEECCCeEEE
No 32
>4HDE_A SCO1/SenC family lipoprotein; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy; HET: MSE; 1.317A {Bacillus anthracis} SCOP: c.47.1.0, l.1.1.1
Probab=35.73  E-value=1.3e+02  Score=17.64  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=0.0  Template_Neff=13.100
Q ss_pred             CcEEEECCCEEEEECCCCCEEEEee
Q FD01848538_019   42 GTIKYQGKRATVVLNQDGKVVTVFG   66 (72)
Q Consensus        42 ~s~~y~g~~atVVlN~~g~vVT~~~   66 (72)
                      ....+.+--..++|+++|+++-.+.
T Consensus       127 ~~~~~~~~p~~~lid~~g~v~~~~~  151 (170)
T 4HDE_A          127 ENGQVIHGTSFYLIDQNGKVMKKYS  151 (170)
T ss_dssp             TTSCCBCCCEEEEECTTSCEEEEEE
T ss_pred             CCCceecccEEEEECCCCcEEEEee
No 33
>6L80_D Mitotic-spindle organizing protein 1; gamma tubulin complex, microprotien, microtubule, TRANSLATION; 2.00049753238A {Schizosaccharomyces pombe (strain 972 / ATCC 24843)}
Probab=35.30  E-value=1.2e+02  Score=20.50  Aligned_cols=26  Identities=12%  Similarity=0.196  Sum_probs=0.0  Template_Neff=4.300
Q ss_pred             CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~   31 (72)
                      +|+++..+.   |.+    +.||+++++..+++
T Consensus        57 TGLd~EtL~iCvrLl----E~GVnPeALA~vIk   85 (100)
T 6L80_D           57 TELDKTTLSLCISLC----ENNVHPEAIAQIIR   85 (100)
T ss_dssp             CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 34
>5IMF_A Bacterioferritin comigratory protein; PrxQ, BCP, Peroxidase, redox, OXIDOREDUCTASE; 1.04A {Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)}
Probab=35.27  E-value=1e+02  Score=18.14  Aligned_cols=16  Identities=31%  Similarity=0.636  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++-.+.
T Consensus       124 ~~~~id~~g~v~~~~~  139 (160)
T 5IMF_A          124 STFLLSPEGQVVQAWR  139 (160)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             eEEEECCCCeEEEEEc
No 35
>PF11429.12 ; Colicin_D ; Colicin D
Probab=35.24  E-value=1.3e+02  Score=16.46  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=0.0  Template_Neff=11.500
Q ss_pred             HHHHHHHHhCCeEEee-c---CCCcEEEEC--CCEEEEECCCCCEEEEeecC
Q FD01848538_019   23 IKDMLDAVQNPKKIIE-N---ANGTIKYQG--KRATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        23 ~~~I~dav~nP~~v~~-~---~~~s~~y~g--~~atVVlN~~g~vVT~~~~~   68 (72)
                      ...|.+.+.+|..+.. .   ......|..  ....|+++++|+.++.|.-+
T Consensus        28 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~   79 (88)
T A9I254_BORPD/2   28 ESKIKTHISSASTVQQGTYGFVKDSKVFFNSETNNAVVIDGAGNFVTGFKLS   79 (88)
T ss_pred             HHHHHHHhhcCCceEEEEEcCCCCeEEEEeCCCCeEEEECCCCCEEEEEEcC
No 36
>4EVM_A Thioredoxin family protein; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; 1.506A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=35.01  E-value=93  Score=17.28  Aligned_cols=16  Identities=19%  Similarity=0.488  Sum_probs=0.0  Template_Neff=13.400
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       107 ~~~lid~~g~i~~~~~  122 (138)
T 4EVM_A          107 TQAFIDKEGKLVKTHP  122 (138)
T ss_dssp             EEEEECTTCCEEEEEE
T ss_pred             eEEEECCCCCEEEecC
No 37
>6B9X_B Ragulator complex protein LAMTOR2; Ragulator, Lamtor, SIGNALING PROTEIN; 1.42A {Homo sapiens} SCOP: d.110.7.1, l.1.1.1
Probab=34.27  E-value=1.5e+02  Score=17.67  Aligned_cols=24  Identities=25%  Similarity=0.482  Sum_probs=0.0  Template_Neff=11.200
Q ss_pred             CCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019   48 GKRATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~~~~~~~   71 (72)
                      |-.+.++++++|.+++........
T Consensus        19 gv~~~~l~~~~G~~i~~~~~~~~~   42 (126)
T 6B9X_B           19 GVQSTLLLNNEGSLLAYSGYGDTD   42 (126)
T ss_dssp             TEEEEEEECTTCCEEEEEECCSSC
T ss_pred             CceEEEEECCCCCEEEEecCCCcc
No 38
>PF11399.12 ; DUF3192 ; Protein of unknown function (DUF3192)
Probab=33.89  E-value=1.7e+02  Score=17.41  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=0.0  Template_Neff=10.200
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCc-----EEEECCC------------EEEEECCCCCEE
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGT-----IKYQGKR------------ATVVLNQDGKVV   62 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s-----~~y~g~~------------atVVlN~~g~vV   62 (72)
                      ++...++++.     .|.+.+++...+-.|..+.......     +.|.-..            ..|.++ +|+++
T Consensus        26 ~~~~~~~~l~-----~Gmt~~ev~~~lG~P~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~v~F~-~g~vv   95 (104)
T D4ZHN7_SHEVD/3   26 LNRVSLASLS-----LGMTREQVTVLMGRADFNEAYIEKDKEVHVLFYRTQRIKGDGKTTKDECTPVVIS-NNAVI   95 (104)
T ss_pred             HhHHhHhhCC-----CCCCHHHHHHHhCCCcEEEEEEeCCcEEEEEEEEcCcccCCCcccccceEEEEEE-CCEEE
No 39
>3ME8_A Putative uncharacterized protein; electron transfer protein, ELECTRON TRANSPORT, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center; 1.5A {Aquifex aeolicus}
Probab=33.32  E-value=1.5e+02  Score=18.14  Aligned_cols=21  Identities=14%  Similarity=0.034  Sum_probs=0.0  Template_Neff=12.000
Q ss_pred             EEEEECCCCCEEEEeecCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~   71 (72)
                      +.++||++|+++-.+......
T Consensus       129 ~~~lid~~g~i~~~~~~~~~~  149 (170)
T 3ME8_A          129 VVVVLSPELQIKDYIYGVNYN  149 (170)
T ss_dssp             EEEEECTTSBEEEEEESSSCC
T ss_pred             EEEEECCCCeEEEEEecCCCC
No 40
>6HY0_M Major Outer Capsid Protein P8; virus, dsRNA, capsid; 3.5A {Pseudomonas phage phi6}
Probab=32.46  E-value=1.1e+02  Score=21.58  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=0.0  Template_Neff=1.100
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHhCCeEE
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQNPKKI   36 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~nP~~v   36 (72)
                      +.-.+    +.-+||++|+.|++|--.|
T Consensus        28 ia~~i----gsk~spsailaavk~~pvv   51 (149)
T 6HY0_M           28 IAAAI----GSKVSPSAILAAVKSNPVV   51 (149)
T ss_dssp             HCCCC----CCCSSHHHHHHHHHHCHHH
T ss_pred             HHHHh----cCCCCHHHHHHHHhcCccc
No 41
>8CWS_B F4132-2 Chain B; DE NOVO DESIGN, genetically encoded, 3D protein crystals, DE NOVO PROTEIN; 4.4A {synthetic construct}
Probab=32.43  E-value=1e+02  Score=19.63  Aligned_cols=19  Identities=16%  Similarity=0.046  Sum_probs=0.0  Template_Neff=2.000
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~   31 (72)
                      +.|+.    .+|+|.+++++.+.
T Consensus        21 l~rlq----k~GsSdedvr~Lir   39 (69)
T 8CWS_B           21 LLRLQ----MTGSSDEDVRRLML   39 (69)
T ss_dssp             HHHHH----HTTCCHHHHHHHHH
T ss_pred             HHHHH----hhCCCHHHHHHHHH
No 42
>2LJA_A Putative thiol-disulfide oxidoreductase; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC; NMR {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=32.39  E-value=1.3e+02  Score=17.81  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEeecCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~   71 (72)
                      ..+++|++|+++..+......
T Consensus       111 ~~~~id~~g~v~~~~~~~~~~  131 (152)
T 2LJA_A          111 RFILLDRDGKIISANMTRPSD  131 (152)
T ss_dssp             CEEEECTTSCEEESSCCCTTC
T ss_pred             eEEEECCCCCEEEccCCCCCC
No 43
>6N5U_A Protein SCO1 homolog 1, mitochondrial; thioredoxin fold, metal ion, reduced form, metallochaperone, HCC1, METAL BINDING PROTEIN; 2.66A {Arabidopsis thaliana} SCOP: c.47.1.0
Probab=32.26  E-value=1.7e+02  Score=17.12  Aligned_cols=27  Identities=7%  Similarity=0.187  Sum_probs=0.0  Template_Neff=13.100
Q ss_pred             CCCcEEEECCCEEEEECCCCCEEEEee
Q FD01848538_019   40 ANGTIKYQGKRATVVLNQDGKVVTVFG   66 (72)
Q Consensus        40 ~~~s~~y~g~~atVVlN~~g~vVT~~~   66 (72)
                      ....+.+......+++|++|+++-.+.
T Consensus       123 ~~~~~~~~~~~~~~lid~~g~i~~~~~  149 (170)
T 6N5U_A          123 EDSDYLVDHSIVMYLMSPEMNFVKFYG  149 (170)
T ss_dssp             SSSSEEEEECCCEEEECTTCCEEEEEC
T ss_pred             CCCcceeecceEEEEECCCCcEEEEeC
No 44
>7YH1_B Roadblock/LC7 domain protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; HET: ZN; 2.69A {Candidatus Prometheoarchaeum syntrophicum}
Probab=32.12  E-value=1.3e+02  Score=17.41  Aligned_cols=24  Identities=8%  Similarity=0.173  Sum_probs=0.0  Template_Neff=11.600
Q ss_pred             CCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019   48 GKRATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~~~~~~~   71 (72)
                      |-.+.++++++|.++..+......
T Consensus        19 gv~~~~l~~~~G~~i~~~~~~~~~   42 (117)
T 7YH1_B           19 GIHGSAIIERYGGIISSTLPGWVN   42 (117)
T ss_dssp             TEEEEEEEESSSCEEEECCCTTSC
T ss_pred             CeeEEEEEecCCeEEEecCCCCCC
No 45
>7BQB_A NF6; de novo designed protein, DE NOVO PROTEIN; NMR {synthetic construct}
Probab=32.04  E-value=79  Score=21.35  Aligned_cols=14  Identities=57%  Similarity=0.762  Sum_probs=0.0  Template_Neff=1.300
Q ss_pred             CCCEEEEECCCCCE
Q FD01848538_019   48 GKRATVVLNQDGKV   61 (72)
Q Consensus        48 g~~atVVlN~~g~v   61 (72)
                      |+..-|.+||||+|
T Consensus        40 ~r~iii~L~~DGKi   53 (106)
T 7BQB_A           40 GKLVIVYLTSDGKV   53 (106)
T ss_dssp             TCEEEEEECTTSCE
T ss_pred             CcEEEEEECCCCcE
No 46
>3QDR_B Colicin-A; ColA, TolA, Complex, translocation, ColA binds to TolA, Methylation, PROTEIN TRANSPORT-TOXIN complex; HET: MLY; 2.65A {Escherichia coli}
Probab=32.01  E-value=1.1e+02  Score=19.08  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=0.0  Template_Neff=3.700
Q ss_pred             CCCcEEEECCCEEEEECCCCCEE
Q FD01848538_019   40 ANGTIKYQGKRATVVLNQDGKVV   62 (72)
Q Consensus        40 ~~~s~~y~g~~atVVlN~~g~vV   62 (72)
                      +.....|..+.+.|++|++|..+
T Consensus         2 ~k~g~~~~tP~GkV~in~~G~~~   24 (63)
T 3QDR_B            2 SKPGDSYNTPWGKVIINAAGQPT   24 (63)
T ss_dssp             -----CEEETTEEEECCSTTCCE
T ss_pred             CCCCcceeCCCccEEECCCCCeE
No 47
>PF13778.10 ; DUF4174 ; Domain of unknown function (DUF4174)
Probab=31.92  E-value=1.4e+02  Score=17.13  Aligned_cols=18  Identities=11%  Similarity=0.220  Sum_probs=0.0  Template_Neff=11.600
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..++++++|++.-.|...
T Consensus        76 ~~~lid~~g~i~~~~~~~   93 (112)
T F4L4R4_HALH1/2   76 SALLIGKDGTEKLRSKTA   93 (112)
T ss_pred             EEEEEcCCCCeeEEEcCC
No 48
>4GRF_A Putative thiol-disulfide oxidoreductase; OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics; HET: GSH; 1.76A {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=31.80  E-value=1.4e+02  Score=17.40  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~   69 (72)
                      ..+++|++|+++..+....
T Consensus       112 ~~~lid~~g~i~~~~~~~~  130 (152)
T 4GRF_A          112 HIILVDPEGKIVAKELRGD  130 (152)
T ss_dssp             EEEEECTTSBEEECCCCHH
T ss_pred             EEEEECCCCCEEEeecCch
No 49
>PF08534.14 ; Redoxin ; Redoxin
Probab=31.59  E-value=1.6e+02  Score=16.62  Aligned_cols=19  Identities=21%  Similarity=0.270  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~   69 (72)
                      ..+++|++|+++..+....
T Consensus       108 ~~~lid~~g~v~~~~~~~~  126 (135)
T Q6AIL8_DESPS/2  108 VGFLVNRLGNVVKRYTGYV  126 (135)
T ss_pred             eEEEECCCCcEEEEEeCCC
No 50
>1XZO_A Hypothetical protein ypmQ; thioredoxin-like fold, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, METAL BINDING PROTEIN; HET: CA; 1.702A {Bacillus subtilis} SCOP: c.47.1.10
Probab=31.46  E-value=1.3e+02  Score=18.03  Aligned_cols=16  Identities=25%  Similarity=0.501  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++++++|+++-.+.
T Consensus       138 ~~~lid~~g~i~~~~~  153 (174)
T 1XZO_A          138 SFYLVGPDGKVLKDYN  153 (174)
T ss_dssp             EEEEECTTSEEEEEEE
T ss_pred             EEEEECCCCcEEEEec
No 51
>3DRN_B Peroxiredoxin, bacterioferritin comigratory protein homolog; Peroxiredoxin, Bacterioferritin comigratory protein, OXIDOREDUCTASE; HET: CIT, GOL; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=31.44  E-value=1.3e+02  Score=18.07  Aligned_cols=16  Identities=19%  Similarity=0.544  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++++++|+++-.+.
T Consensus       113 ~~~lid~~g~i~~~~~  128 (161)
T 3DRN_B          113 ITFVIDKKGIIRHIYN  128 (161)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCeEEEEEe
No 52
>6L7R_B Mozart1; gamma tubulin complex, microprotien, microtubule, TRANSLATION; 1.84813131157A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
Probab=30.93  E-value=1.6e+02  Score=19.28  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=0.0  Template_Neff=4.700
Q ss_pred             CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~   31 (72)
                      ||+++.-+.   +.+    +.||.|+++-.+|+
T Consensus        32 TGLd~etL~icv~L~----e~GvnPeALA~vI~   60 (86)
T 6L7R_B           32 CHLDRRTLSICISMI----ENGVNPEALANVIK   60 (86)
T ss_dssp             CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 53
>PF19416.3 ; Astro_VPg ; Astrovirus VPg protein
Probab=30.53  E-value=1.5e+02  Score=19.78  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=0.0  Template_Neff=4.900
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~   31 (72)
                      ||.-..++++    ..|++++.|.+++.
T Consensus        34 ~TEEEY~eLl----e~G~s~eeIr~~v~   57 (95)
T NS1A_TASV1/795   34 LTEEEYNKMV----EDGFSPDEIKEVVD   57 (95)
T ss_pred             CCHHHHHHHH----HCCCCHHHHHHHHH
No 54
>2FY6_A Peptide methionine sulfoxide reductase msrA/msrB; PILB, Cytochrome maturation protein, Thioredoxin, Methionine sulfoxide reductase, OXIDOREDUCTASE; 1.9A {Neisseria meningitidis} SCOP: c.47.1.10
Probab=30.49  E-value=1.4e+02  Score=16.96  Aligned_cols=16  Identities=19%  Similarity=0.414  Sum_probs=0.0  Template_Neff=13.000
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       109 ~~~~id~~g~i~~~~~  124 (143)
T 2FY6_A          109 SWALIGKDGDVQRIVK  124 (143)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             eEEEEcCCCCEEEEEc
No 55
>4NMU_B Thiol-disulfide oxidoreductase ResA; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; HET: ACY, EDO, MSE, GOL; 1.35A {Bacillus anthracis} SCOP: c.47.1.0
Probab=30.43  E-value=1.5e+02  Score=17.21  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=0.0  Template_Neff=12.600
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       115 ~~~~id~~g~i~~~~~  130 (147)
T 4NMU_B          115 TSFLIDKDGKVVEQII  130 (147)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
No 56
>3HCZ_A Possible thiol-disulfide isomerase; APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: SO4; 1.88A {Cytophaga hutchinsonii} SCOP: c.47.1.0, l.1.1.1
Probab=30.33  E-value=1.3e+02  Score=17.36  Aligned_cols=15  Identities=13%  Similarity=0.226  Sum_probs=0.0  Template_Neff=12.900
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..+++|++|+++..+
T Consensus       114 ~~~lid~~g~i~~~~  128 (148)
T 3HCZ_A          114 VLYVLDKNKVIIAKR  128 (148)
T ss_dssp             EEEEECTTCBEEEES
T ss_pred             EEEEECCCCeEEEee
No 57
>3IXR_A Bacterioferritin comigratory protein; Alpha Beta Protein, OXIDOREDUCTASE; 1.6A {Xylella fastidiosa} SCOP: c.47.1.0, l.1.1.1
Probab=30.06  E-value=1.3e+02  Score=18.90  Aligned_cols=16  Identities=13%  Similarity=0.395  Sum_probs=0.0  Template_Neff=11.700
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       143 ~~~lid~~g~i~~~~~  158 (179)
T 3IXR_A          143 STFLIGPTHRIVEAWR  158 (179)
T ss_dssp             EEEEECTTSBEEEEEC
T ss_pred             eEEEECCCCcEEEEec
No 58
>1WE0_B alkyl hydroperoxide reductase C; Peroxiredoxin, AhpC, OXIDOREDUCTASE; 2.9A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=30.03  E-value=1.7e+02  Score=18.03  Aligned_cols=19  Identities=16%  Similarity=0.337  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEeecCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~   69 (72)
                      +.++||++|+++-.+....
T Consensus       121 ~~~lid~~g~i~~~~~~~~  139 (187)
T 1WE0_B          121 GTFIIDPDGVIQAIEINAD  139 (187)
T ss_dssp             EEEEECTTSBEEEEEEECT
T ss_pred             EEEEECCCCcEEEEEecCC
No 59
>PF04322.16 ; DUF473 ; Protein of unknown function (DUF473)
Probab=29.86  E-value=1.1e+02  Score=21.16  Aligned_cols=19  Identities=11%  Similarity=0.279  Sum_probs=0.0  Template_Neff=5.100
Q ss_pred             CCCHHHHHHHHhCCeEEee
Q FD01848538_019   20 GVNIKDMLDAVQNPKKIIE   38 (72)
Q Consensus        20 GVs~~~I~dav~nP~~v~~   38 (72)
                      |+|+..|.|.++|+.+...
T Consensus         8 GIS~~vi~eL~~~~~rTiE   26 (118)
T D1YYL8_METPS/1    8 GLSKESLSELSKRHVRTFE   26 (118)
T ss_pred             cCCHHHHHHHHhCCCCEEE
No 60
>4G2E_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics; 1.4A {Sulfolobus tokodaii} SCOP: c.47.1.0, l.1.1.1
Probab=29.84  E-value=1.9e+02  Score=16.87  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      ..+++|++|+++-.+.......
T Consensus       121 ~~~~id~~g~i~~~~~~~~~~~  142 (157)
T 4G2E_A          121 AVFVIDKEGKVRYKWVSDDPTK  142 (157)
T ss_dssp             EEEEECTTSBEEEEEEESSTTC
T ss_pred             eEEEECCCCeEEEEEecCCCCC
No 61
>2LUS_A Thioredoxion; Cr-TRP16, OXIDOREDUCTASE; NMR {Carcinoscorpius rotundicauda}
Probab=29.45  E-value=1.2e+02  Score=17.45  Aligned_cols=18  Identities=28%  Similarity=0.698  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..+++|++|+++..+...
T Consensus       111 ~~~lid~~g~i~~~~~~~  128 (143)
T 2LUS_A          111 ALVIVKKDGTLISMNGRG  128 (143)
T ss_dssp             EEEEEETTSCEEESSCHH
T ss_pred             EEEEEcCCCCEEeccccc
No 62
>6VPD_A Glutathione peroxidase; glutathione peroxidase, OXIDOREDUCTASE; 2.603A {Hypocrea jecorina (strain QM6a)} SCOP: c.47.1.0
Probab=28.78  E-value=1.4e+02  Score=18.20  Aligned_cols=16  Identities=25%  Similarity=0.598  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++||++|+++..+.
T Consensus       156 ~~~lid~~g~i~~~~~  171 (192)
T 6VPD_A          156 EKFLIGRDGKVIGRWA  171 (192)
T ss_dssp             CEEEECTTSCEEEEEC
T ss_pred             eEEEECCCCcEEEEec
No 63
>PF21434.1 ; TerS_N ; Phage G20C small terminase, N-terminal domain
Probab=28.66  E-value=2.1e+02  Score=16.90  Aligned_cols=29  Identities=14%  Similarity=0.376  Sum_probs=0.0  Template_Neff=1.000
Q ss_pred             cccHHHHHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    3 GYTRHGLNQAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav~   31 (72)
                      ||.+.-+.|.++-+..|.|+.+.++..+.
T Consensus        15 gfdpseiaqtlsldakrkvteeevlhvla   43 (50)
T TERS_BP234/2-5   15 GFDPSEIAQTLSLDAKRKVTEEEVLHVLA   43 (50)
T ss_pred             CCCHHHHHHHcCccccCCCCHHHHHHHHH
No 64
>2P31_A Glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, Structural Genomics, Structural Genomics Consortium, SGC, OXIDOREDUCTASE; 2.0A {Homo sapiens} SCOP: c.47.1.0
Probab=28.57  E-value=1.5e+02  Score=18.30  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=0.0  Template_Neff=12.100
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      +.++|+++|+++..+...
T Consensus       149 ~~~lid~~G~i~~~~~~~  166 (181)
T 2P31_A          149 WKYLVAPDGKVVGAWDPT  166 (181)
T ss_dssp             CEEEECTTSCEEEEECTT
T ss_pred             EEEEECCCCCEEEeeCCC
No 65
>2MT4_A Transcription termination/antitermination protein NusA; Transcription factor, NUSA, RNA Polymerase, Transcription; NMR {Bacillus subtilis}
Probab=28.44  E-value=54  Score=21.16  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=0.0  Template_Neff=8.700
Q ss_pred             CCCCCHHHHHHHHhCCeEEeecCCCcEEEEC-CCEEEEECCCCCEEEEe
Q FD01848538_019   18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQG-KRATVVLNQDGKVVTVF   65 (72)
Q Consensus        18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g-~~atVVlN~~g~vVT~~   65 (72)
                      ++|++.+.+.++++.-+...-    .-.|-. .+..|.+|++...+..|
T Consensus        15 ek~i~~e~v~~~le~ai~~a~----~k~~~~~~~i~v~id~~~g~i~i~   59 (124)
T 2MT4_A           15 EKGISKEIIIEAIEAALISAY----KRNFNQAQNVRVDLNRETGSIRVF   59 (124)
T ss_dssp             STTCCHHHHHHHHHHHHHHHH----HTTSTTTCCCEEEEETTTTEEEEE
T ss_pred             HhCCCHHHHHHHHHHHHHHHH----HhhCCCCCCEEEEEeCCCCeEEEE
No 66
>PF03698.17 ; UPF0180 ; Uncharacterised protein family (UPF0180)
Probab=28.39  E-value=1e+02  Score=18.83  Aligned_cols=14  Identities=14%  Similarity=0.527  Sum_probs=0.0  Template_Neff=7.300
Q ss_pred             CCCCHHHHHHHHhC
Q FD01848538_019   19 KGVNIKDMLDAVQN   32 (72)
Q Consensus        19 rGVs~~~I~dav~n   32 (72)
                      +|-|+++|.+.|++
T Consensus        63 ~gks~eeI~~~l~~   76 (77)
T Q67SE0_SYMTH/7   63 TGKTVEEIVRQVKE   76 (77)
T ss_pred             CCCCHHHHHHHHHc
No 67
>2KWP_A Transcription elongation protein nusA; NusA, transcription; NMR {Escherichia coli}
Probab=27.95  E-value=62  Score=21.02  Aligned_cols=44  Identities=14%  Similarity=0.252  Sum_probs=0.0  Template_Neff=8.700
Q ss_pred             CCCCCHHHHHHHHhCCeEEeecCCCcEEEEC-CCEEEEECCCCCEEEEe
Q FD01848538_019   18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQG-KRATVVLNQDGKVVTVF   65 (72)
Q Consensus        18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g-~~atVVlN~~g~vVT~~   65 (72)
                      +++++.+.+.++++.-+...-    ...|-. .+..|.+|++...+..|
T Consensus        15 ek~i~~e~v~~~i~~al~~a~----~k~~~~~~~~~v~id~~~g~i~i~   59 (129)
T 2KWP_A           15 EKALPREKIFEALESALATAT----KKKYEQEIDVRVQIDRKSGDFDTF   59 (129)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHH----HHHHCSCCCEEEEEETTTTEEEEE
T ss_pred             HcCCCHHHHHHHHHHHHHHHH----HHhcCCCCcEEEEEECCCCeEEEE
No 68
>7UR8_A 170_h_ob; DE NOVO DESIGN, Beta-barrel, Protein binder, DE NOVO PROTEIN; 1.5A {synthetic construct}
Probab=27.94  E-value=1.4e+02  Score=18.81  Aligned_cols=15  Identities=47%  Similarity=0.869  Sum_probs=0.0  Template_Neff=1.000
Q ss_pred             EEECCCCCEEEEeec
Q FD01848538_019   53 VVLNQDGKVVTVFGK   67 (72)
Q Consensus        53 VVlN~~g~vVT~~~~   67 (72)
                      |++|.+|++.-+.++
T Consensus        50 vivnedgkllhvqgs   64 (72)
T 7UR8_A           50 VIVNEDGKLLHVQGS   64 (72)
T ss_dssp             EEECTTCCEEECCCC
T ss_pred             EEEcCCCCEEEEecc
No 69
>2R37_B Glutathione peroxidase 3; GLUTATHIONE, PEROXIDASE, PLASMA, STRUCTURAL GENOMICS CONSORTIUM, SGC, Oxidoreductase, Secreted, Selenium, Selenocysteine; 1.85A {Homo sapiens} SCOP: c.47.1.0
Probab=27.92  E-value=1.5e+02  Score=20.26  Aligned_cols=18  Identities=11%  Similarity=0.270  Sum_probs=0.0  Template_Neff=9.900
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..++||++|+++..|...
T Consensus       161 ~~~lid~~G~i~~~~~~~  178 (207)
T 2R37_B          161 EKFLVGPDGIPIMRWHHR  178 (207)
T ss_dssp             CEEEECTTSCEEEEECTT
T ss_pred             eEEEeCCCCcEEEEecCC
No 70
>PF12244.12 ; DUF3606 ; Protein of unknown function (DUF3606)
Probab=27.71  E-value=1.1e+02  Score=17.07  Aligned_cols=12  Identities=25%  Similarity=0.482  Sum_probs=0.0  Template_Neff=7.900
Q ss_pred             CCCHHHHHHHHh
Q FD01848538_019   20 GVNIKDMLDAVQ   31 (72)
Q Consensus        20 GVs~~~I~dav~   31 (72)
                      |||++.+.+|++
T Consensus        29 ~vs~~~l~~av~   40 (53)
T C4LBJ3_TOLAT/5   29 GCTDRELAAAVR   40 (53)
T ss_pred             CCCHHHHHHHHH
No 71
>2B1L_B Thiol:disulfide interchange protein dsbE; Comparison with the E.coli CcmG, folding topology change, OXIDOREDUCTASE; 1.9A {Escherichia coli} SCOP: c.47.1.10
Probab=27.65  E-value=1.8e+02  Score=16.23  Aligned_cols=17  Identities=12%  Similarity=0.229  Sum_probs=0.0  Template_Neff=12.900
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..+++|++|+++..+..
T Consensus        89 ~~~~~d~~g~i~~~~~g  105 (129)
T 2B1L_B           89 ETFLIDGNGIIRYRHAG  105 (129)
T ss_dssp             EEEEECTTSCEEEEEES
T ss_pred             EEEEECCCCcEEEEEcC
No 72
>3LOR_B Thiol-disulfide isomerase and thioredoxins; Thiol, isomerase, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative; HET: MSE; 2.2A {Corynebacterium glutamicum}
Probab=27.44  E-value=1.8e+02  Score=16.88  Aligned_cols=16  Identities=13%  Similarity=0.302  Sum_probs=0.0  Template_Neff=13.000
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       123 ~~~lid~~g~i~~~~~  138 (160)
T 3LOR_B          123 SIILADRKGRIRQVQF  138 (160)
T ss_dssp             EEEEECTTCBEEEEEE
T ss_pred             EEEEEcCCCcEEEEEe
No 73
>2YZH_B Probable thiol peroxidase; Redox protein, Antioxidant, Oxidoreductase, Peroxidase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses; HET: SO4; 1.85A {Aquifex aeolicus} SCOP: c.47.1.0, l.1.1.1
Probab=27.24  E-value=1.5e+02  Score=18.72  Aligned_cols=15  Identities=33%  Similarity=0.601  Sum_probs=0.0  Template_Neff=11.200
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      +.+++|++|+++..+
T Consensus       135 ~~~lid~~g~i~~~~  149 (171)
T 2YZH_B          135 AVFIIDKEGKVAYVQ  149 (171)
T ss_dssp             EEEEECTTSBEEEEE
T ss_pred             EEEEECCCCeEEEEE
No 74
>PF13154.10 ; DUF3991 ; Protein of unknown function (DUF3991)
Probab=27.10  E-value=2.1e+02  Score=16.50  Aligned_cols=45  Identities=9%  Similarity=0.076  Sum_probs=0.0  Template_Neff=8.600
Q ss_pred             CCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCC
Q FD01848538_019   18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~   69 (72)
                      .|+++++.|...+...+.... ..+...|.+.+      .+|+++-+.-.+.
T Consensus         6 ~R~I~~~~i~~~~~~g~i~~d-~~~n~vF~~~d------~~g~~~g~~~rg~   50 (71)
T A7IQ02_XANP2/1    6 ERALSDATIRAAIRHDRLREG-PHGSMWAAHTD------DAGLVTGWEERGP   50 (71)
T ss_pred             hcCCCHHHHHHHHHCCCEEEC-CCCCEEEEEeC------CCCCEEEEEEeCC
No 75
>2H30_A Peptide methionine sulfoxide reductase msrA/msrB; reduced, methionine sulfoxide, thiol-disulfide exchange, OXIDOREDUCTASE; HET: MSE; 1.6A {Neisseria gonorrhoeae} SCOP: c.47.1.10
Probab=27.00  E-value=1.8e+02  Score=17.11  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..++++++|+++..+..
T Consensus       124 ~~~lid~~g~i~~~~~g  140 (164)
T 2H30_A          124 SWALIGKDGDVQRIVKG  140 (164)
T ss_dssp             EEEEECTTSCEEEEEES
T ss_pred             EEEEEcCCCcEEEEEcC
No 76
>7F8M_D Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 2.14A {Candidatus Thorarchaeota archaeon SMTZ1-45}
Probab=26.92  E-value=1.8e+02  Score=16.82  Aligned_cols=22  Identities=14%  Similarity=0.273  Sum_probs=0.0  Template_Neff=11.700
Q ss_pred             CCCEEEEECCCCCEEEEeecCC
Q FD01848538_019   48 GKRATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~~~~~   69 (72)
                      |-.+.++++++|.++..+....
T Consensus        20 gv~~~~~~~~~G~~i~~~~~~~   41 (120)
T 7F8M_D           20 GVEGAALVSADGLMISSALPET   41 (120)
T ss_dssp             TEEEEEEEETTSCEEEECSCTT
T ss_pred             CeeEEEEEcCCCeEEEEeCCcC
No 77
>2B5Y_A YkuV protein; Thioredoxin-like, OXIDOREDUCTASE; NMR {Bacillus subtilis} SCOP: c.47.1.10
Probab=26.66  E-value=2.2e+02  Score=16.38  Aligned_cols=18  Identities=17%  Similarity=0.250  Sum_probs=0.0  Template_Neff=12.900
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..++++++|+++..+...
T Consensus       113 ~~~lid~~g~i~~~~~~~  130 (148)
T 2B5Y_A          113 AYYVFDKTGQLRHFQAGG  130 (148)
T ss_dssp             EEEEECTTSBEEEEEECC
T ss_pred             EEEEECCCCcEEEEEecC
No 78
>PF20029.3 ; DUF6436 ; Domain of unknown function (DUF6436)
Probab=26.35  E-value=1.3e+02  Score=16.35  Aligned_cols=11  Identities=9%  Similarity=0.555  Sum_probs=0.0  Template_Neff=9.400
Q ss_pred             EEEECCCCCEE
Q FD01848538_019   52 TVVLNQDGKVV   62 (72)
Q Consensus        52 tVVlN~~g~vV   62 (72)
                      .+|+|++++++
T Consensus         6 ~~vid~~~~l~   16 (59)
T Q88CL8_PSEPK/1    6 VAIWDRQGRLA   16 (59)
T ss_pred             EEEECCCCcEE
No 79
>3KIJ_C Probable glutathione peroxidase 8; Human PDI-peroxidase, glutathione peroxidase, Membrane, Oxidoreductase, Peroxidase, Transmembrane; 1.8A {Homo sapiens} SCOP: c.47.1.0
Probab=26.27  E-value=1.7e+02  Score=17.80  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=0.0  Template_Neff=12.500
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      +.+++|++|+++-.+
T Consensus       138 ~~~lid~~g~i~~~~  152 (180)
T 3KIJ_C          138 WKYLVNPEGQVVKFW  152 (180)
T ss_dssp             CEEEECTTSCEEEEE
T ss_pred             eEEEECCCCcEEEEe
No 80
>2BMX_A ALKYL HYDROPEROXIDASE C; PEROXIREDOXIN, ANTIOXIDANT DEFENSE SYSTEM, MYCOBACTERIUM TUBERCULOSIS, OXIDOREDUCTASE, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS; HET: MSE; 2.4A {MYCOBACTERIUM TUBERCULOSIS} SCOP: c.47.1.10
Probab=25.84  E-value=2.4e+02  Score=17.58  Aligned_cols=21  Identities=10%  Similarity=0.204  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEeecCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~   71 (72)
                      ..+++|++|+++..+......
T Consensus       134 ~~~lid~~g~v~~~~~~~~~~  154 (195)
T 2BMX_A          134 VTFIVDPNNEIQFVSATAGSV  154 (195)
T ss_dssp             EEEEECTTSBEEEEEEECTTC
T ss_pred             EEEEECCCCeEEEEEecCCCC
No 81
>4YGT_A Uncharacterized protein YjgB; putative secreted lipoprotein, the first structural representative of PF14172 family, Structural Genomics, Joint Center for Structural; HET: MSE, EDO; 2.13A {Bacillus subtilis}
Probab=25.80  E-value=3.3e+02  Score=18.27  Aligned_cols=43  Identities=9%  Similarity=0.107  Sum_probs=0.0  Template_Neff=8.900
Q ss_pred             CHHHHHHHHhCCeEEeecCCCcEEEECC-----CEEEEECCCCCEEEEe
Q FD01848538_019   22 NIKDMLDAVQNPKKIIENANGTIKYQGK-----RATVVLNQDGKVVTVF   65 (72)
Q Consensus        22 s~~~I~dav~nP~~v~~~~~~s~~y~g~-----~atVVlN~~g~vVT~~   65 (72)
                      +.++|.+.+-.|..... ..+.+.|...     ...+-+|++++++...
T Consensus        45 t~~~V~~~~G~P~~~~~-~~g~~~~y~~~~g~~~~~~~~d~~~~v~~i~   92 (160)
T 4YGT_A           45 TKGDVHAAFGEPERPVG-GDNRFDLYHWNMGQPGYGFSYHKDMTISEIR   92 (160)
T ss_dssp             BHHHHHHHHCSCSBCSB-TTBCSEEECCBTTBCEEEEEECTTSBEEEEE
T ss_pred             CHHHHHHHhCCCCeeec-CCCeEEEeecCCcccEEEEEEcCCCeEEEEE
No 82
>1Y9I_C low temperature requirement C protein; Structural Genomics, Protein Structure Initiative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, Helical; HET: MSE; 1.8A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=25.63  E-value=1.4e+02  Score=21.41  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=0.0  Template_Neff=7.000
Q ss_pred             ccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019    4 YTRHGLNQAIGRNGGKGVNIKDMLDAV   30 (72)
Q Consensus         4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav   30 (72)
                      +.+.-++|..    +|||+.++|.+++
T Consensus        10 ~~~~v~~~L~----erGItiedi~~~~   32 (178)
T 1Y9I_C           10 LESKARSWLI----ERGVEIDDIAELV   32 (178)
T ss_dssp             HHHHHHHHHH----HTTCCHHHHHHHH
T ss_pred             HHHHHHHHHH----HCCCCHHHHHHHH
No 83
>1Z5Y_E Thiol:disulfide interchange protein dsbE; DSBD, N-TERMINAL DOMAIN, IMMUNOGLOBULIN-LIKE, CCMG, THIOREDOXIN-LIKE, DISULFIDE-LINKED, OXIDOREDUCTASE-BIOSYNTHETIC PROTEIN COMPLEX; HET: EDO; 1.94A {Escherichia coli} SCOP: c.47.1.10
Probab=25.28  E-value=1.9e+02  Score=17.04  Aligned_cols=16  Identities=13%  Similarity=0.266  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++..+.
T Consensus       103 ~~~~i~~~g~i~~~~~  118 (149)
T 1Z5Y_E          103 ETFLIDGNGIIRYRHA  118 (149)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCCeEEEEee
No 84
>4PQ1_A Putative electron transport related protein; Thioredoxin-like region, reductant, oxidant, Oxidoreductase; 2.097A {Corynebacterium diphtheriae}
Probab=25.20  E-value=2.4e+02  Score=16.50  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..+++|++|+++-.+...
T Consensus       127 ~~~lid~~g~i~~~~~~~  144 (158)
T 4PQ1_A          127 TTIVLDKQHRPAAVFLRE  144 (158)
T ss_dssp             EEEEECTTSCEEEEESSC
T ss_pred             EEEEECCCCCEEEEEeCC
No 85
>7WET_A Peroxiredoxin-1; Complex, Inhibitor, Peroxiredoxin, OXIDOREDUCTASE; HET: AQR; 1.76A {Homo sapiens}
Probab=25.11  E-value=2.1e+02  Score=17.04  Aligned_cols=16  Identities=6%  Similarity=0.225  Sum_probs=0.0  Template_Neff=12.900
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++++++|+++-.+.
T Consensus       129 ~~~lid~~g~i~~~~~  144 (175)
T 7WET_A          129 GLFIIDDKGILRQITV  144 (175)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             eEEEECCCCcEEEEEe
No 86
>3P7X_C Probable thiol peroxidase; THIOREDOXIN FOLD, OXIDOREDUCTASE, PEROXIDASE; HET: SO4, PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=24.98  E-value=1.8e+02  Score=17.64  Aligned_cols=15  Identities=47%  Similarity=0.434  Sum_probs=0.0  Template_Neff=12.200
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..+++|++|+++-.+
T Consensus       131 ~~~lid~~g~i~~~~  145 (166)
T 3P7X_C          131 AVFVLDADNKVVYKE  145 (166)
T ss_dssp             EEEEECTTCBEEEEE
T ss_pred             EEEEECCCCEEEEEE
No 87
>PF16816.9 ; DotD ; DotD protein
Probab=24.89  E-value=2e+02  Score=19.12  Aligned_cols=18  Identities=28%  Similarity=0.503  Sum_probs=0.0  Template_Neff=7.500
Q ss_pred             CCCEEEEECCCCCEEEEe
Q FD01848538_019   48 GKRATVVLNQDGKVVTVF   65 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~   65 (72)
                      |..|.|+++++.++|...
T Consensus       105 g~~A~v~v~~~~~~i~l~  122 (123)
T Q5ZS45_LEGPH/3  105 GKKASIHVYPNSQVVELR  122 (123)
T ss_pred             CCCEEEEEeCCCCEEEEE
No 88
>PF18039.5 ; UBA_6 ; UBA-like domain
Probab=24.86  E-value=1.6e+02  Score=16.18  Aligned_cols=27  Identities=15%  Similarity=0.340  Sum_probs=0.0  Template_Neff=6.400
Q ss_pred             cccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019    3 GYTRHGLNQAIGRNGGKGVNIKDMLDAV   30 (72)
Q Consensus         3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav   30 (72)
                      ||+..-+..++.+- ++.+...++++.+
T Consensus        12 Gys~~q~~~vl~kl-g~~~~~n~~L~eL   38 (42)
T H2TPR0_TAKRU/1   12 GYSTAQVQAIQQQF-GPNTDTDKVLGEL   38 (42)
T ss_pred             CCCHHHHHHHHHHH-CCCCCccHHHHHH
No 89
>PF20317.2 ; HTH_60 ; Helix-turn-helix domain
Probab=24.80  E-value=2.1e+02  Score=19.72  Aligned_cols=29  Identities=10%  Similarity=0.221  Sum_probs=0.0  Template_Neff=6.900
Q ss_pred             cccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEe
Q FD01848538_019    3 GYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKII   37 (72)
Q Consensus         3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~   37 (72)
                      |+|..-+.+..      ||..+++.+.+++|..+.
T Consensus        88 ~ls~etIA~~a------~v~~~dl~~fl~d~~~v~  116 (140)
T A0A0X8G3A4_9FI   88 GLKLETFAAYA------NVPLEEVQLFLAHPEQVE  116 (140)
T ss_pred             CCCHHHHHHHc------CCCHHHHHHHHHCcccCC
No 90
>3EUR_A uncharacterized protein; PSI2, MCSG, conserved protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function; HET: MSE; 1.3A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=24.77  E-value=1.3e+02  Score=17.47  Aligned_cols=12  Identities=17%  Similarity=0.393  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEE
Q FD01848538_019   51 ATVVLNQDGKVV   62 (72)
Q Consensus        51 atVVlN~~g~vV   62 (72)
                      ..++++++|+++
T Consensus       116 ~~~~id~~g~i~  127 (142)
T 3EUR_A          116 TLYLLDKNKTVL  127 (142)
T ss_dssp             EEEEECTTCBEE
T ss_pred             EEEEECCCCeEE
No 91
>3IA1_B Thio-disulfide isomerase/thioredoxin; OXIDOREDUCTASE, DISULFIDE ISOMERASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR; 1.76A {Thermus thermophilus}
Probab=24.77  E-value=2e+02  Score=16.99  Aligned_cols=17  Identities=41%  Similarity=0.706  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..+++|++|+++-.+..
T Consensus       112 ~~~lid~~g~i~~~~~g  128 (154)
T 3IA1_B          112 WTFVVDREGKVVALFAG  128 (154)
T ss_dssp             EEEEECTTSEEEEEEES
T ss_pred             EEEEECCCCcEEEEeCC
No 92
>2LS5_A Uncharacterized protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology; NMR {Bacteroides thetaiotaomicron} SCOP: c.47.1.0, l.1.1.1
Probab=24.69  E-value=1.9e+02  Score=16.98  Aligned_cols=16  Identities=25%  Similarity=0.611  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++-.+.
T Consensus       117 ~~~lid~~g~i~~~~~  132 (159)
T 2LS5_A          117 RNVLIDREGKIVKLTR  132 (159)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             eEEEECCCCcEEEeec
No 93
>PF09695.14 ; YtfJ_HI0045 ; Bacterial protein of unknown function (YtfJ_HI0045)
Probab=24.35  E-value=2.1e+02  Score=17.48  Aligned_cols=16  Identities=31%  Similarity=0.474  Sum_probs=0.0  Template_Neff=11.800
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++-.+.
T Consensus       126 ~~~lid~~g~i~~~~~  141 (159)
T Q87JM8_VIBPA/2  126 AIIVQNKQGEILFVKE  141 (159)
T ss_pred             EEEEEcCCCeEEEEEe
No 94
>PF20452.2 ; Calmod_bind_C ; Calmodulin binding protein C-terminal domain
Probab=23.98  E-value=2.3e+02  Score=15.70  Aligned_cols=21  Identities=10%  Similarity=0.384  Sum_probs=0.0  Template_Neff=8.800
Q ss_pred             EEEECCCEEEEECCCCCEEEE
Q FD01848538_019   44 IKYQGKRATVVLNQDGKVVTV   64 (72)
Q Consensus        44 ~~y~g~~atVVlN~~g~vVT~   64 (72)
                      +.|.+++..+++|+-++++-+
T Consensus         3 y~y~~~~~~~~fn~v~~v~~~   23 (60)
T A0A3B6PHL1_WHE    3 YVFKSEGCDVIFSPIGEILAA   23 (60)
T ss_pred             EEEccCCeEEEECCCceEEEE
No 95
>7CT3_A Mutual gliding motility protein C (MglC); Roadblock/LC7 domain, CYTOSOLIC PROTEIN; HET: MSE; 1.85A {Myxococcus xanthus DK 1622}
Probab=23.88  E-value=2e+02  Score=16.84  Aligned_cols=20  Identities=40%  Similarity=0.496  Sum_probs=0.0  Template_Neff=11.400
Q ss_pred             CCCEEEEECCCCCEEEEeec
Q FD01848538_019   48 GKRATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~~~   67 (72)
                      |=.+.++++.+|.++.....
T Consensus        16 gv~~~~l~~~~G~~i~~~~~   35 (120)
T 7CT3_A           16 GALACSVMGFDGISVDTFQK   35 (120)
T ss_dssp             TEEEEEEEETTSCEEEEEEC
T ss_pred             CeeEEEEecCCceeeeEeec
No 96
>1LU4_A SOLUBLE SECRETED ANTIGEN MPT53; THIOREDOXIN-LIKE FOLD, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, OXIDOREDUCTASE; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.55  E-value=2.2e+02  Score=15.99  Aligned_cols=15  Identities=33%  Similarity=0.275  Sum_probs=0.0  Template_Neff=13.000
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..++++++|+++..+
T Consensus       102 ~~~~~d~~g~i~~~~  116 (136)
T 1LU4_A          102 AFVFYRADGTSTFVN  116 (136)
T ss_dssp             EEEEECTTSCEEEEC
T ss_pred             eEEEECCCCcEEEEe
No 97
>6B87_B TMHC2_E; De novo design, transmembrane protein, helical bundle, dimer, MEMBRANE PROTEIN; 2.947A {synthetic construct}
Probab=23.15  E-value=1.7e+02  Score=20.03  Aligned_cols=19  Identities=16%  Similarity=0.288  Sum_probs=0.0  Template_Neff=1.400
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQ   31 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~   31 (72)
                      ++|..    .+|+|.+++.+.++
T Consensus        45 lerlq----reGsSdedvreLlr   63 (111)
T 6B87_B           45 LERLQ----REGSSDEDVRELLR   63 (111)
T ss_dssp             HHHHH----HHTCCHHHHHHHHH
T ss_pred             HHHHH----HcCCCHHHHHHHHH
No 98
>PF10210.13 ; MRP-S32 ; Mitochondrial 28S ribosomal protein S32
Probab=22.84  E-value=1.7e+02  Score=19.06  Aligned_cols=13  Identities=23%  Similarity=0.738  Sum_probs=0.0  Template_Neff=6.400
Q ss_pred             EEECCCCCEEEEe
Q FD01848538_019   53 VVLNQDGKVVTVF   65 (72)
Q Consensus        53 VVlN~~g~vVT~~   65 (72)
                      |++..||.+|-||
T Consensus         3 i~~t~dg~tivcw   15 (96)
T A0A2I3GYF6_NOM    3 LALTSDGRTIVCY   15 (96)
T ss_pred             eEeCCCCCEEEEE
No 99
>3EYT_B uncharacterized protein SPOA0173; Thioredoxin-like superfamily protein SPOA0173, SILICIBACTER POMEROYI DSS, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for; HET: EDO, ACY, MSE; 1.95A {Silicibacter pomeroyi}
Probab=22.58  E-value=2.4e+02  Score=16.43  Aligned_cols=16  Identities=6%  Similarity=0.206  Sum_probs=0.0  Template_Neff=12.900
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++-.+.
T Consensus       120 ~~~lid~~g~i~~~~~  135 (158)
T 3EYT_B          120 SLLLIDKAGDLRAHHF  135 (158)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCcEEEEec
No 100
>4JE1_B Probable thiol peroxidase; SSGCID, THIOL PEROXIDASE, Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics; 1.4A {Burkholderia cenocepacia} SCOP: c.47.1.10
Probab=22.54  E-value=2.4e+02  Score=17.48  Aligned_cols=16  Identities=38%  Similarity=0.364  Sum_probs=0.0  Template_Neff=11.900
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++||++|+++-.+.
T Consensus       142 ~~~lid~~g~i~~~~~  157 (175)
T 4JE1_B          142 AVVVLDAQDKVIHAEL  157 (175)
T ss_dssp             EEEEECTTCBEEEEEE
T ss_pred             EEEEECCCCeEEEEEe
No 101
>5C04_B Putative peroxiredoxin MT2298; OXIDOREDUCTASE, 1-cys peroxiredoxin, peroxiredoxin, thioredoxin fold, Mycobacterium tuberculosis, active site mutant; 1.45A {Mycobacterium tuberculosis}
Probab=22.51  E-value=2.2e+02  Score=16.60  Aligned_cols=17  Identities=24%  Similarity=0.233  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..+++|++|+++-.+..
T Consensus       118 ~~~lid~~g~i~~~~~~  134 (153)
T 5C04_B          118 GTFVVDRSGIIRFAEMK  134 (153)
T ss_dssp             EEEEECTTSBEEEEEEE
T ss_pred             eEEEECCCCeEEEEecC
No 102
>1V74_A Colicin D; colicin D - ImmD complex, cytotoxicity, transfer RNase, protein-protein inhibition, ANTIBIOTIC-IMMUNE SYSTEM COMPLEX; HET: 1PE; 2.0A {Escherichia coli} SCOP: d.243.1.1
Probab=22.41  E-value=2.5e+02  Score=15.67  Aligned_cols=46  Identities=9%  Similarity=0.264  Sum_probs=0.0  Template_Neff=11.900
Q ss_pred             HHHHHHHHhCCeEEee-c---CCCcEEEE--CCCEEEEECCCCCEEEEeecC
Q FD01848538_019   23 IKDMLDAVQNPKKIIE-N---ANGTIKYQ--GKRATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        23 ~~~I~dav~nP~~v~~-~---~~~s~~y~--g~~atVVlN~~g~vVT~~~~~   68 (72)
                      ..+|.+.+.+|..+.. .   ......|.  .....|+.+++|+.++.|..+
T Consensus        41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~   92 (107)
T 1V74_A           41 RDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN   92 (107)
T ss_dssp             HHHHHHHHHCTTCEECCBCTTSTTCEEEECTTTCEEEEECTTSCEEEEEECC
T ss_pred             HHHHHHHhhCCCceeeeEEcCCCCeEEEeeCCCCcEEEECCCCCEEEEEEcC
No 103
>2F9S_A Thiol-disulfide oxidoreductase resA; Thioredoxin-like protein, Oxidoreductase; HET: MSE; 1.401A {Bacillus subtilis} SCOP: c.47.1.10
Probab=22.31  E-value=2.8e+02  Score=16.73  Aligned_cols=18  Identities=39%  Similarity=0.623  Sum_probs=0.0  Template_Neff=11.800
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..++++++|+++..+...
T Consensus       106 ~~~lid~~g~i~~~~~g~  123 (151)
T 2F9S_A          106 TTFLINPEGKVVKVVTGT  123 (151)
T ss_dssp             EEEEECTTSEEEEEEESC
T ss_pred             EEEEECCCCcEEEEEecC
No 104
>1JFU_B THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA; THIOREDOXIN-LIKE, DOUBLE DISULFIDE BRIDGE, MEMBRANE PROTEIN; 1.6A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=22.28  E-value=2.4e+02  Score=17.15  Aligned_cols=15  Identities=13%  Similarity=0.415  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..+++|++|+++-.+
T Consensus       146 ~~~lid~~g~v~~~~  160 (186)
T 1JFU_B          146 TSVLVDPQGCEIATI  160 (186)
T ss_dssp             EEEEECTTSBEEEEE
T ss_pred             EEEEECCCCcEEEEE
No 105
>3ZL5_J PEROXIREDOXIN I; OXIDOREDUCTASE, PEROXIDASE, SCHISTOSOMIASIS, CHAPERONE, THIOREDOXIN FOLD; HET: PEG, SO4; 2.493A {SCHISTOSOMA MANSONI} SCOP: c.47.1.0
Probab=22.23  E-value=2.8e+02  Score=18.20  Aligned_cols=20  Identities=5%  Similarity=0.210  Sum_probs=0.0  Template_Neff=11.500
Q ss_pred             EEEEECCCCCEEEEeecCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRG   70 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~   70 (72)
                      ..++||++|+++..+.....
T Consensus       162 ~~~lid~~g~i~~~~~~~~~  181 (222)
T 3ZL5_J          162 GLFIIDPNGILRQITINDKP  181 (222)
T ss_dssp             EEEEECTTSBEEEEEEECTT
T ss_pred             EEEEECCCCeEEEEEecCCC
No 106
>2M72_A Uncharacterized thioredoxin-like protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology; NMR {Porphyromonas gingivalis} SCOP: c.47.1.0, l.1.1.1
Probab=22.06  E-value=2.9e+02  Score=16.28  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=0.0  Template_Neff=12.500
Q ss_pred             EEEEECCCCCEEEEeecCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~   71 (72)
                      ..++++++|+++..+......
T Consensus       114 ~~~lid~~g~i~~~~~~~~~~  134 (156)
T 2M72_A          114 AVFIVDGNGKIVYNHTGYTEG  134 (156)
T ss_dssp             EEEEECTTSSEEEEEECCCSS
T ss_pred             EEEEECCCCeEEEeecCCCCC
No 107
>6NU2_a 39S ribosomal protein L42, mitochondrial; mitochondrial ribosome recycling Factor, mtRRF, 55S, RIBOSOME; HET: MG; 3.9A {Homo sapiens}
Probab=21.93  E-value=2.1e+02  Score=19.01  Aligned_cols=16  Identities=19%  Similarity=0.607  Sum_probs=0.0  Template_Neff=6.400
Q ss_pred             CEEEEECCCCCEEEEe
Q FD01848538_019   50 RATVVLNQDGKVVTVF   65 (72)
Q Consensus        50 ~atVVlN~~g~vVT~~   65 (72)
                      +..|++..+|.+|-+|
T Consensus        12 ~~~i~vt~dg~tivcw   27 (108)
T 6NU2_a           12 NVELALTSDGRTIVCY   27 (108)
T ss_pred             cceEEEcCCCCEEEEE
No 108
>4O5R_D AhpC component, subunit of alkylhydroperoxide reductase; OXIDOREDUCTASE, hydrogen peroxide; 3.33A {Escherichia coli}
Probab=21.92  E-value=3.1e+02  Score=16.56  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      ..++++++|+++-.+.......
T Consensus       121 ~~~lid~~g~i~~~~~~~~~~~  142 (187)
T 4O5R_D          121 ATFVVDPQGIIQAIEVTAEGIG  142 (187)
T ss_dssp             EEEEECTTSBEEEEEEECTTCC
T ss_pred             eEEEECCCCeEEEEEEeCCCCC
No 109
>2N5J_A Ribonuclease ZC3H12A; Regnase, Regnase-1, Zc3h12a, HYDROLASE; NMR {Mus musculus}
Probab=21.91  E-value=2e+02  Score=16.46  Aligned_cols=27  Identities=15%  Similarity=0.426  Sum_probs=0.0  Template_Neff=6.200
Q ss_pred             cccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019    3 GYTRHGLNQAIGRNGGKGVNIKDMLDAV   30 (72)
Q Consensus         3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav   30 (72)
                      ||+..-+.+++.+- ++.+...+|++.+
T Consensus        19 GYs~~qi~~vl~kl-g~~~~~n~vL~EL   45 (49)
T 2N5J_A           19 GYSSSEIHSVLQKL-GVQADTNTVLGEL   45 (49)
T ss_dssp             TCCHHHHHHHHHHH-TTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh-CCCCCccHHHHHH
No 110
>5Y63_E Alkyl hydroperoxide reductase, C subunit; Oxidoreductase, 2Cys peroxiredoxins; 2.87A {Enterococcus faecalis (strain ATCC 700802 / V583)} SCOP: c.47.1.0
Probab=21.77  E-value=2.7e+02  Score=17.04  Aligned_cols=17  Identities=12%  Similarity=0.268  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..+++|++|+++-.+..
T Consensus       132 ~~~lid~~g~v~~~~~~  148 (183)
T 5Y63_E          132 ASFIVSPEGDIKSYEIN  148 (183)
T ss_dssp             EEEEECTTSBEEEEEEE
T ss_pred             EEEEECCCCcEEEEEec
No 111
>2B7K_C SCO1 protein; Metallochaperone, Cytochrome c Oxidase, Sco, Sco1, METAL BINDING PROTEIN; 1.8A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=21.73  E-value=3.3e+02  Score=16.81  Aligned_cols=25  Identities=8%  Similarity=0.137  Sum_probs=0.0  Template_Neff=12.600
Q ss_pred             CCcEEEECCCEEEEECCCCCEEEEe
Q FD01848538_019   41 NGTIKYQGKRATVVLNQDGKVVTVF   65 (72)
Q Consensus        41 ~~s~~y~g~~atVVlN~~g~vVT~~   65 (72)
                      ...+....--..++||++|+|+-.+
T Consensus       137 ~~~~~~~~~p~~~lid~~g~i~~~~  161 (200)
T 2B7K_C          137 GQDYLVDHSIFFYLMDPEGQFVDAL  161 (200)
T ss_dssp             ----CTTTCCCEEEECTTSCEEEEE
T ss_pred             CCceeeecCcEEEEECCCCcEEEEe
No 112
>5ENU_B Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SSGCID, Peroxiredoxin, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE; 1.35A {Burkholderia ambifaria} SCOP: c.47.1.0
Probab=21.73  E-value=2.6e+02  Score=16.78  Aligned_cols=17  Identities=18%  Similarity=0.419  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEeec
Q FD01848538_019   51 ATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~   67 (72)
                      ..++++++|+++-.+..
T Consensus       128 ~~~lid~~g~i~~~~~~  144 (161)
T 5ENU_B          128 STFLIDADGVLRQAWRG  144 (161)
T ss_dssp             EEEEECTTSBEEEEEES
T ss_pred             eEEEECCCCeEEEEEeC
No 113
>3LEQ_A uncharacterized protein cvnB5; PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, structure genomics, unknown function; HET: MSE; 1.85A {Streptomyces avermitilis}
Probab=21.59  E-value=2.4e+02  Score=16.39  Aligned_cols=20  Identities=35%  Similarity=0.355  Sum_probs=0.0  Template_Neff=11.800
Q ss_pred             CCCEEEEECCCCCEEEEeec
Q FD01848538_019   48 GKRATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~~~   67 (72)
                      |-.+.++++++|.++..+..
T Consensus        18 gv~~~~l~~~~G~~i~~~~~   37 (126)
T 3LEQ_A           18 EVDHAVVLSEDGLVVSKSTG   37 (126)
T ss_dssp             TEEEEEEEETTSCEEEECTT
T ss_pred             CeeEEEEEcCCCceeEEecC
No 114
>4LLR_J Tryparedoxin peroxidase; PEROXIREDOXIN, PEROXIDASE, OXIDOREDUCTASE; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=21.30  E-value=2.6e+02  Score=17.35  Aligned_cols=16  Identities=0%  Similarity=0.104  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++||++|+++-.+.
T Consensus       129 ~~~lid~~g~i~~~~~  144 (197)
T 4LLR_J          129 GLFIIDPKQNLRQITV  144 (197)
T ss_dssp             EEEEECTTCBEEEEEE
T ss_pred             EEEEECCCCcEEEEEE
No 115
>3ADY_A DotD; 3-layer(bab) sandwich, MTH1598-like, PROTON TRANSPORT; 2.0A {Legionella pneumophila}
Probab=21.07  E-value=2.5e+02  Score=19.26  Aligned_cols=18  Identities=28%  Similarity=0.503  Sum_probs=0.0  Template_Neff=7.500
Q ss_pred             CCCEEEEECCCCCEEEEe
Q FD01848538_019   48 GKRATVVLNQDGKVVTVF   65 (72)
Q Consensus        48 g~~atVVlN~~g~vVT~~   65 (72)
                      |..|.|+++++.++|...
T Consensus       125 g~~a~v~v~~~~k~I~l~  142 (148)
T 3ADY_A          125 GKKASIHVYPNSQVVELR  142 (148)
T ss_dssp             GGGEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEeCCCCEEEEE
No 116
>1LY1_A polynucleotide kinase; PNK, KINASE, PHOSPHATASE, POLYNUCLEOTIDE, T4, PHAGE, TRANSFERASE; HET: SO4; 2.0A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=20.97  E-value=3e+02  Score=16.03  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=0.0  Template_Neff=13.500
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCCCCC
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSRGPE   72 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~~~~   72 (72)
                      ++|...|. .+.++.+.+...+..-..... ..-...+......++++.++.+-.+.....+.|
T Consensus       120 ~~r~~~r~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~  181 (181)
T 1LY1_A          120 VKRNSKRG-TKAVPIDVLRSMYKSMREYLG-LPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDL  181 (181)
T ss_dssp             HHHHTTCG-GGCCCHHHHHHHHHHHHHHHT-CCCC-----------------------------
T ss_pred             HHHHHhcC-CCCCCHHHHHHHHHHHHHHhC-CCccCCCCCCCCeEEEECCCceecccCCCCCCC
No 117
>1PSQ_A probable thiol peroxidase; STRUCTURAL GENOMICS, THIOL, PEROXIDASE, NYSGXRC, T817, PSI, Protein Structure Initiative, New York SGX Research Center for; HET: MSE; 2.3A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=20.78  E-value=3.2e+02  Score=16.26  Aligned_cols=21  Identities=24%  Similarity=0.093  Sum_probs=0.0  Template_Neff=12.500
Q ss_pred             EEEEECCCCCEEEEeecCCCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~~~   71 (72)
                      ..++++++|+++-.+......
T Consensus       128 ~~~lid~~g~i~~~~~~~~~~  148 (163)
T 1PSQ_A          128 AVFVLDTDNTIRYVEYVDNIN  148 (163)
T ss_dssp             EEEEECTTCBEEEEEECSBTT
T ss_pred             EEEEECCCCeEEEEEEcCCCC
No 118
>PF20003.3 ; fvmX5 ; FtsH ternary system domain X5
Probab=20.77  E-value=5.3e+02  Score=18.81  Aligned_cols=40  Identities=13%  Similarity=0.190  Sum_probs=0.0  Template_Neff=6.600
Q ss_pred             HHH-HHHHhCCeEEeecCCCc-EEEECCCEEEEECCCCCEEEE
Q FD01848538_019   24 KDM-LDAVQNPKKIIENANGT-IKYQGKRATVVLNQDGKVVTV   64 (72)
Q Consensus        24 ~~I-~dav~nP~~v~~~~~~s-~~y~g~~atVVlN~~g~vVT~   64 (72)
                      .++ ..+|..+--... +++. ++..-...+|.+||++..+++
T Consensus        39 ~~LL~~~L~~~Gw~~~-~dg~~~r~~~~g~~v~~d~~t~~v~i   80 (188)
T A0A2S9XDD7_9DE   39 AALLERELEGAGFEQR-EDGQWVRADEDGVEVRVDPQASTVTV   80 (188)
T ss_pred             HHHHHHHHhhCCcEEc-CCCcEEEEcCCCEEEEEECCCCEEEE
No 119
>2L5O_A Putative thioredoxin; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; NMR {Neisseria meningitidis serogroup B} SCOP: c.47.1.0, l.1.1.1
Probab=20.74  E-value=3e+02  Score=16.01  Aligned_cols=18  Identities=11%  Similarity=0.486  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEeecC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~   68 (72)
                      ..++++++|+++-.+...
T Consensus       109 ~~~~id~~g~i~~~~~~~  126 (153)
T 2L5O_A          109 TSVLIGKKGEILKTYVGE  126 (153)
T ss_dssp             EEEEECSSSCCCEEEESS
T ss_pred             EEEEECCCCCEEEEecCC
No 120
>8AO0_A Photoactive yellow protein; fluorogen-activating protein, FAST, nanoFAST, spatial structure, dynamics, ligand sepcificity, fluorogen, binding constatnt, FLUORESCENT PROTEIN; HET: GGL, O1F; NMR {synthetic construct}
Probab=20.64  E-value=3e+02  Score=16.13  Aligned_cols=19  Identities=16%  Similarity=0.286  Sum_probs=0.0  Template_Neff=10.900
Q ss_pred             CCEEEEECCCCCEEEEeec
Q FD01848538_019   49 KRATVVLNQDGKVVTVFGK   67 (72)
Q Consensus        49 ~~atVVlN~~g~vVT~~~~   67 (72)
                      ..+.++++++|+++.+...
T Consensus         1 ~~~i~i~d~~g~i~~~N~~   19 (112)
T 8AO0_A            1 MFGAIQLDGDGNILQYNAA   19 (112)
T ss_dssp             CCEEEEECTTSBEEEECHH
T ss_pred             CceEEEECCCCcEEEEeCC
No 121
>PF00578.25 ; AhpC-TSA ; AhpC/TSA family
Probab=20.52  E-value=1.9e+02  Score=16.25  Aligned_cols=12  Identities=8%  Similarity=0.133  Sum_probs=0.0  Template_Neff=12.600
Q ss_pred             EEEEECCCCCEE
Q FD01848538_019   51 ATVVLNQDGKVV   62 (72)
Q Consensus        51 atVVlN~~g~vV   62 (72)
                      ..++++++|+++
T Consensus       114 ~~~lid~~g~i~  125 (127)
T Q8EW09_MALP2/1  114 SIFIIDEFNFVK  125 (127)
T ss_pred             eEEEECCCCcEE
No 122
>1RFZ_D Hypothetical protein APC35681; Structural Genomics, Hypothetical Protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: SO4, MSE; 2.8A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=20.52  E-value=1.8e+02  Score=20.43  Aligned_cols=18  Identities=17%  Similarity=0.278  Sum_probs=0.0  Template_Neff=7.500
Q ss_pred             HHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019    9 LNQAIGRNGGKGVNIKDMLDAV   30 (72)
Q Consensus         9 l~r~ig~~~~rGVs~~~I~dav   30 (72)
                      ++|..    +|||+.++|.+++
T Consensus        17 ~~~L~----erGi~~e~i~~~~   34 (168)
T 1RFZ_D           17 RRWLE----ERGVTVEKIAELV   34 (168)
T ss_dssp             HHHHH----HHTCCHHHHHHHH
T ss_pred             HHHHH----HCCCCHHHHHHHH
No 123
>4KCE_A Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis} SCOP: c.47.1.10
Probab=20.34  E-value=2.5e+02  Score=18.15  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=0.0  Template_Neff=11.800
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..++||++|+|+..+
T Consensus       146 ~~~lid~~g~i~~~~  160 (213)
T 4KCE_A          146 GLFVIDKKGTLRHST  160 (213)
T ss_dssp             EEEEECTTSBEEEEE
T ss_pred             EEEEECCCCeEEEEE
No 124
>4KCE_B Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis}
Probab=20.34  E-value=2.5e+02  Score=18.15  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=0.0  Template_Neff=11.800
Q ss_pred             EEEEECCCCCEEEEe
Q FD01848538_019   51 ATVVLNQDGKVVTVF   65 (72)
Q Consensus        51 atVVlN~~g~vVT~~   65 (72)
                      ..++||++|+|+..+
T Consensus       146 ~~~lid~~g~i~~~~  160 (213)
T 4KCE_B          146 GLFVIDKKGTLRHST  160 (213)
T ss_dssp             EEEEECTTCBEEEEE
T ss_pred             EEEEECCCCeEEEEE
No 125
>4WBJ_A Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=20.28  E-value=3.1e+02  Score=15.87  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=0.0  Template_Neff=13.200
Q ss_pred             CCcEEEECCCEEEEECCCCCEEEEeecC
Q FD01848538_019   41 NGTIKYQGKRATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        41 ~~s~~y~g~~atVVlN~~g~vVT~~~~~   68 (72)
                      ...+.+..--..++++++|+++-.+...
T Consensus       123 ~~~~~~~~~p~~~lid~~g~i~~~~~~~  150 (164)
T 4WBJ_A          123 DGDYTMDHTALIYLMDRDGRFVSPFNLK  150 (164)
T ss_dssp             TTCEEEEECCCCEEECTTSCEEEECCCS
T ss_pred             CCCeEeeeceEEEEECCCCcEEEeecCC
No 126
>4WBJ_B Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=20.28  E-value=3.1e+02  Score=15.87  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=0.0  Template_Neff=13.200
Q ss_pred             CCcEEEECCCEEEEECCCCCEEEEeecC
Q FD01848538_019   41 NGTIKYQGKRATVVLNQDGKVVTVFGKS   68 (72)
Q Consensus        41 ~~s~~y~g~~atVVlN~~g~vVT~~~~~   68 (72)
                      ...+.+..--..++++++|+++-.+...
T Consensus       123 ~~~~~~~~~p~~~lid~~g~i~~~~~~~  150 (164)
T 4WBJ_B          123 DGDYTMDHTALIYLMDRDGRFVSPFNLK  150 (164)
T ss_dssp             TTCEEEEECCCCEEECTTSCEEEECCCS
T ss_pred             CCCeEeeeceEEEEECCCCcEEEeecCC
No 127
>3HDC_A Thioredoxin family protein; thioredoxin, Geobacter metallireducens, GS-15, ATCC53774, DSM 7210, 11211i, Structural Genomics, PSI-2, Protein Structure Initiative, New York; HET: MSE; 1.771A {Geobacter metallireducens GS-15} SCOP: c.47.1.0, l.1.1.1
Probab=20.25  E-value=2.9e+02  Score=16.50  Aligned_cols=19  Identities=11%  Similarity=0.193  Sum_probs=0.0  Template_Neff=12.300
Q ss_pred             EEEEECCCCCEEEEeecCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~   69 (72)
                      ..++++++|+++..+....
T Consensus       118 ~~~~i~~~g~v~~~~~g~~  136 (158)
T 3HDC_A          118 DTFIVDRKGIIRQRVTGGI  136 (158)
T ss_dssp             EEEEECTTSBEEEEEESCC
T ss_pred             cEEEECCCCeEEEEeeCCC
No 128
>4GQC_D Thiol peroxidase; CXXXXC Motif, fully folded, locally unfolded, peroxide, DTT, Structural Genomics, RIKEN, peroxiredoxin, reduces peroxides, disulfide, OXIDOREDUCTASE; HET: SO4, DTD, GOL; 2.0A {Aeropyrum pernix} SCOP: l.1.1.1, c.47.1.10
Probab=20.23  E-value=2.8e+02  Score=16.37  Aligned_cols=16  Identities=25%  Similarity=0.410  Sum_probs=0.0  Template_Neff=12.700
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++++++|+++-.+.
T Consensus       123 ~~~~id~~g~v~~~~~  138 (164)
T 4GQC_D          123 AVFIVKPDGTVAYKWV  138 (164)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCeEEEEEe
No 129
>3KCM_D Thioredoxin family protein; SGX, thioredoxin protein, PSI, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural; HET: SO4, MSE; 2.45A {Geobacter metallireducens GS-15} SCOP: c.47.1.0
Probab=20.13  E-value=3.1e+02  Score=16.21  Aligned_cols=16  Identities=19%  Similarity=0.374  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..++++++|+++..+.
T Consensus       109 ~~~lid~~g~i~~~~~  124 (154)
T 3KCM_D          109 ETFVIDRHGVILKKVV  124 (154)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCcEEEEEe
No 130
>PF04461.17 ; DUF520 ; Protein of unknown function (DUF520)
Probab=20.11  E-value=1.1e+02  Score=22.09  Aligned_cols=48  Identities=13%  Similarity=0.209  Sum_probs=0.0  Template_Neff=5.200
Q ss_pred             CCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019   21 VNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSRGP   71 (72)
Q Consensus        21 Vs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~~~   71 (72)
                      |..+++.+||.+-.+-..   .+|-|.|..+.+-++...+.|+..+.+.+.
T Consensus         9 vd~qEv~NAv~qa~kEi~---~RyDFKgt~~~Ie~~~k~~~i~l~a~~e~k   56 (161)
T G8TS90_SULAD/5    9 PDWAEVLNAIDQVRRETA---NRYDFRGHSITVDYDDKAHEIHLDAPSGMI   56 (161)
T ss_pred             CCHHHHHHHHHHHHHHHh---hccccCCCceEEecCcccceeeeecCChhh
No 131
>1Q98_A Thiol Peroxidase; structural genomics, tpx, peroxidase, NYSGXRC, T1429, PSI, Protein Structure Initiative, New York SGX Research Center for; 1.9A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=20.10  E-value=3e+02  Score=16.48  Aligned_cols=16  Identities=25%  Similarity=0.331  Sum_probs=0.0  Template_Neff=12.400
Q ss_pred             EEEEECCCCCEEEEee
Q FD01848538_019   51 ATVVLNQDGKVVTVFG   66 (72)
Q Consensus        51 atVVlN~~g~vVT~~~   66 (72)
                      ..+++|++|+++-.+.
T Consensus       132 ~~~lid~~g~v~~~~~  147 (165)
T 1Q98_A          132 AVIVLDEQNNVLHSQL  147 (165)
T ss_dssp             EEEEECTTSBEEEEEE
T ss_pred             EEEEECCCCcEEEEEe
No 132
>4XRA_E Alkyl hydroperoxide reductase subunit C; peroxiredoxin, FF, PrxI, conformation, OXIDOREDUCTASE; HET: CL; 1.75A {Salmonella enterica subsp. enterica serovar Typhimurium} SCOP: c.47.1.10
Probab=20.01  E-value=3.5e+02  Score=16.35  Aligned_cols=19  Identities=21%  Similarity=0.305  Sum_probs=0.0  Template_Neff=12.800
Q ss_pred             EEEEECCCCCEEEEeecCC
Q FD01848538_019   51 ATVVLNQDGKVVTVFGKSR   69 (72)
Q Consensus        51 atVVlN~~g~vVT~~~~~~   69 (72)
                      ..+++|++|+++-.+....
T Consensus       120 ~~~lid~~g~i~~~~~~~~  138 (186)
T 4XRA_E          120 ATFVVDPQGIIQAIEVTAE  138 (186)
T ss_dssp             EEEEECTTSBEEEEEEECT
T ss_pred             EEEEECCCCcEEEEEEcCC