Query FD01848538_01952 RHS repeat family protein
Match_columns 72
No_of_seqs 109 out of 148
Neff 5.47699
Searched_HMMs 86581
Date Tue Feb 27 20:54:02 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2464162.hhr -oa3m ../results/2464162.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14076.10 ; DUF4258 ; Domain 98.4 4.2E-06 4.9E-11 46.9 6.0 58 4-65 1-74 (75)
2 PF12106.12 ; Colicin_E5 ; Coli 95.6 0.35 4E-06 28.2 7.8 67 2-72 3-77 (82)
3 PF04365.17 ; BrnT_toxin ; Ribo 95.1 0.48 5.6E-06 27.1 7.0 64 4-71 1-79 (79)
4 3U97_A Ribonuclease toxin BrnT 94.8 0.18 2E-06 32.4 4.8 62 4-69 38-109 (114)
5 2FHZ_B Colicin-E5; Protein-Pro 91.4 1.7 1.9E-05 27.6 5.4 59 9-72 19-94 (108)
6 7VD7_A toxin; Toxin-Antitoxin 89.7 4.1 4.8E-05 24.0 5.7 61 4-68 6-84 (94)
7 5D0O_E Outer membrane protein 89.6 4.9 5.7E-05 24.4 6.2 53 20-72 49-112 (123)
8 4DM5_A Osmotically inducible l 88.7 7 8.1E-05 24.8 7.8 60 4-68 16-84 (103)
9 2YH9_A SMALL PROTEIN A; LIPOPR 86.8 7.5 8.7E-05 23.1 6.8 64 4-72 5-79 (88)
10 5EKQ_E Outer membrane protein 83.5 11 0.00013 22.2 6.3 53 20-72 30-93 (94)
11 5I4Q_A Contact-dependent inhib 80.1 19 0.00022 22.5 6.1 57 4-62 24-83 (92)
12 PF10715.13 ; REGB_T4 ; T4-page 78.9 3.7 4.3E-05 29.4 2.4 25 4-32 44-68 (150)
13 2HX6_A Ribonuclease; alpha/bet 78.5 4 4.6E-05 29.3 2.5 25 4-32 45-69 (153)
14 5WAM_B Outer membrane protein 77.0 24 0.00027 21.9 6.2 59 4-68 22-91 (108)
15 PF20132.3 ; DUF6522 ; Family o 75.9 16 0.00018 23.4 4.4 44 20-63 22-75 (87)
16 PF18810.5 ; PBECR2 ; phage-Bar 69.1 31 0.00035 21.9 4.6 52 17-68 42-109 (132)
17 7JRK_A Outer membrane protein 68.0 61 0.0007 22.8 7.4 65 2-71 14-89 (154)
18 PF07467.15 ; BLIP ; Beta-lacta 67.7 42 0.00049 20.9 5.0 49 13-65 8-61 (121)
19 PF04355.17 ; SmpA_OmlA ; SmpA 65.6 31 0.00036 18.6 5.2 48 11-62 10-68 (71)
20 PF12554.12 ; MOZART1 ; Mitotic 63.3 26 0.0003 20.2 3.1 26 2-31 16-44 (47)
21 2PXG_A Outer membrane protein; 60.5 57 0.00066 20.5 4.7 48 13-65 26-85 (118)
22 7TXX_A BA5; Bam complex, outer 56.3 82 0.00095 20.4 7.1 63 4-71 36-115 (147)
23 PF17510.6 ; GP44 ; Gene produc 50.4 55 0.00064 22.5 3.5 26 42-68 43-70 (108)
24 8GZU_61 NADH dehydrogenase [ub 48.4 1.3E+02 0.0015 24.3 5.5 60 3-70 121-185 (318)
25 PF07504.17 ; FTP ; Fungalysin/ 48.1 59 0.00068 16.3 3.8 26 42-67 25-50 (51)
26 3GMX_A BLP; 2-layer alpha/beta 47.8 1.2E+02 0.0014 19.8 5.7 48 12-63 11-63 (154)
27 PF03849.18 ; Tfb2 ; Transcript 43.8 50 0.00057 24.5 2.7 25 4-32 326-350 (354)
28 6L81_B Mitotic-spindle organiz 42.0 85 0.00099 20.5 3.3 26 2-31 40-68 (85)
29 7PC1_A StbA; Plasmid conjugati 40.4 61 0.0007 19.0 2.3 19 9-31 30-48 (72)
30 5UDO_D A118 serine integrase; 38.0 93 0.0011 21.8 3.2 37 1-37 53-89 (328)
31 3GMV_X Beta-lactamase inhibito 37.8 1.8E+02 0.0021 19.0 5.7 49 11-63 9-65 (156)
32 4HDE_A SCO1/SenC family lipopr 35.7 1.3E+02 0.0015 17.6 3.3 25 42-66 127-151 (170)
33 6L80_D Mitotic-spindle organiz 35.3 1.2E+02 0.0014 20.5 3.3 26 2-31 57-85 (100)
34 5IMF_A Bacterioferritin comigr 35.3 1E+02 0.0012 18.1 2.7 16 51-66 124-139 (160)
35 PF11429.12 ; Colicin_D ; Colic 35.2 1.3E+02 0.0015 16.5 6.5 46 23-68 28-79 (88)
36 4EVM_A Thioredoxin family prot 35.0 93 0.0011 17.3 2.4 16 51-66 107-122 (138)
37 6B9X_B Ragulator complex prote 34.3 1.5E+02 0.0017 17.7 3.4 24 48-71 19-42 (126)
38 PF11399.12 ; DUF3192 ; Protein 33.9 1.7E+02 0.0019 17.4 5.5 53 4-62 26-95 (104)
39 3ME8_A Putative uncharacterize 33.3 1.5E+02 0.0018 18.1 3.4 21 51-71 129-149 (170)
40 6HY0_M Major Outer Capsid Prot 32.5 1.1E+02 0.0013 21.6 2.9 24 9-36 28-51 (149)
41 8CWS_B F4132-2 Chain B; DE NOV 32.4 1E+02 0.0012 19.6 2.4 19 9-31 21-39 (69)
42 2LJA_A Putative thiol-disulfid 32.4 1.3E+02 0.0015 17.8 2.9 21 51-71 111-131 (152)
43 6N5U_A Protein SCO1 homolog 1, 32.3 1.7E+02 0.002 17.1 3.6 27 40-66 123-149 (170)
44 7YH1_B Roadblock/LC7 domain pr 32.1 1.3E+02 0.0015 17.4 2.8 24 48-71 19-42 (117)
45 7BQB_A NF6; de novo designed p 32.0 79 0.00091 21.4 2.0 14 48-61 40-53 (106)
46 3QDR_B Colicin-A; ColA, TolA, 32.0 1.1E+02 0.0013 19.1 2.6 23 40-62 2-24 (63)
47 PF13778.10 ; DUF4174 ; Domain 31.9 1.4E+02 0.0016 17.1 2.9 18 51-68 76-93 (112)
48 4GRF_A Putative thiol-disulfid 31.8 1.4E+02 0.0016 17.4 2.9 19 51-69 112-130 (152)
49 PF08534.14 ; Redoxin ; Redoxin 31.6 1.6E+02 0.0019 16.6 3.2 19 51-69 108-126 (135)
50 1XZO_A Hypothetical protein yp 31.5 1.3E+02 0.0015 18.0 2.7 16 51-66 138-153 (174)
51 3DRN_B Peroxiredoxin, bacterio 31.4 1.3E+02 0.0015 18.1 2.8 16 51-66 113-128 (161)
52 6L7R_B Mozart1; gamma tubulin 30.9 1.6E+02 0.0019 19.3 3.3 26 2-31 32-60 (86)
53 PF19416.3 ; Astro_VPg ; Astrov 30.5 1.5E+02 0.0017 19.8 3.1 24 4-31 34-57 (95)
54 2FY6_A Peptide methionine sulf 30.5 1.4E+02 0.0016 17.0 2.7 16 51-66 109-124 (143)
55 4NMU_B Thiol-disulfide oxidore 30.4 1.5E+02 0.0018 17.2 2.9 16 51-66 115-130 (147)
56 3HCZ_A Possible thiol-disulfid 30.3 1.3E+02 0.0015 17.4 2.6 15 51-65 114-128 (148)
57 3IXR_A Bacterioferritin comigr 30.1 1.3E+02 0.0015 18.9 2.7 16 51-66 143-158 (179)
58 1WE0_B alkyl hydroperoxide red 30.0 1.7E+02 0.0019 18.0 3.2 19 51-69 121-139 (187)
59 PF04322.16 ; DUF473 ; Protein 29.9 1.1E+02 0.0012 21.2 2.4 19 20-38 8-26 (118)
60 4G2E_A Peroxiredoxin; redox pr 29.8 1.9E+02 0.0022 16.9 3.4 22 51-72 121-142 (157)
61 2LUS_A Thioredoxion; Cr-TRP16, 29.4 1.2E+02 0.0014 17.5 2.4 18 51-68 111-128 (143)
62 6VPD_A Glutathione peroxidase; 28.8 1.4E+02 0.0016 18.2 2.6 16 51-66 156-171 (192)
63 PF21434.1 ; TerS_N ; Phage G20 28.7 2.1E+02 0.0024 16.9 3.5 29 3-31 15-43 (50)
64 2P31_A Glutathione peroxidase 28.6 1.5E+02 0.0018 18.3 2.8 18 51-68 149-166 (181)
65 2MT4_A Transcription terminati 28.4 54 0.00062 21.2 0.8 44 18-65 15-59 (124)
66 PF03698.17 ; UPF0180 ; Unchara 28.4 1E+02 0.0012 18.8 2.0 14 19-32 63-76 (77)
67 2KWP_A Transcription elongatio 28.0 62 0.00071 21.0 1.0 44 18-65 15-59 (129)
68 7UR8_A 170_h_ob; DE NOVO DESIG 27.9 1.4E+02 0.0016 18.8 2.4 15 53-67 50-64 (72)
69 2R37_B Glutathione peroxidase 27.9 1.5E+02 0.0017 20.3 2.9 18 51-68 161-178 (207)
70 PF12244.12 ; DUF3606 ; Protein 27.7 1.1E+02 0.0012 17.1 1.8 12 20-31 29-40 (53)
71 2B1L_B Thiol:disulfide interch 27.7 1.8E+02 0.0021 16.2 2.8 17 51-67 89-105 (129)
72 3LOR_B Thiol-disulfide isomera 27.4 1.8E+02 0.0021 16.9 2.9 16 51-66 123-138 (160)
73 2YZH_B Probable thiol peroxida 27.2 1.5E+02 0.0018 18.7 2.7 15 51-65 135-149 (171)
74 PF13154.10 ; DUF3991 ; Protein 27.1 2.1E+02 0.0025 16.5 5.9 45 18-69 6-50 (71)
75 2H30_A Peptide methionine sulf 27.0 1.8E+02 0.0021 17.1 2.9 17 51-67 124-140 (164)
76 7F8M_D Robl_LC7 domain-contain 26.9 1.8E+02 0.0021 16.8 2.8 22 48-69 20-41 (120)
77 2B5Y_A YkuV protein; Thioredox 26.7 2.2E+02 0.0025 16.4 3.1 18 51-68 113-130 (148)
78 PF20029.3 ; DUF6436 ; Domain o 26.4 1.3E+02 0.0014 16.4 2.0 11 52-62 6-16 (59)
79 3KIJ_C Probable glutathione pe 26.3 1.7E+02 0.002 17.8 2.7 15 51-65 138-152 (180)
80 2BMX_A ALKYL HYDROPEROXIDASE C 25.8 2.4E+02 0.0027 17.6 3.3 21 51-71 134-154 (195)
81 4YGT_A Uncharacterized protein 25.8 3.3E+02 0.0038 18.3 5.8 43 22-65 45-92 (160)
82 1Y9I_C low temperature require 25.6 1.4E+02 0.0016 21.4 2.4 23 4-30 10-32 (178)
83 1Z5Y_E Thiol:disulfide interch 25.3 1.9E+02 0.0022 17.0 2.8 16 51-66 103-118 (149)
84 4PQ1_A Putative electron trans 25.2 2.4E+02 0.0027 16.5 3.1 18 51-68 127-144 (158)
85 7WET_A Peroxiredoxin-1; Comple 25.1 2.1E+02 0.0024 17.0 2.9 16 51-66 129-144 (175)
86 3P7X_C Probable thiol peroxida 25.0 1.8E+02 0.0021 17.6 2.6 15 51-65 131-145 (166)
87 PF16816.9 ; DotD ; DotD protei 24.9 2E+02 0.0023 19.1 3.0 18 48-65 105-122 (123)
88 PF18039.5 ; UBA_6 ; UBA-like d 24.9 1.6E+02 0.0018 16.2 2.2 27 3-30 12-38 (42)
89 PF20317.2 ; HTH_60 ; Helix-tur 24.8 2.1E+02 0.0024 19.7 3.1 29 3-37 88-116 (140)
90 3EUR_A uncharacterized protein 24.8 1.3E+02 0.0016 17.5 2.0 12 51-62 116-127 (142)
91 3IA1_B Thio-disulfide isomeras 24.8 2E+02 0.0023 17.0 2.8 17 51-67 112-128 (154)
92 2LS5_A Uncharacterized protein 24.7 1.9E+02 0.0022 17.0 2.7 16 51-66 117-132 (159)
93 PF09695.14 ; YtfJ_HI0045 ; Bac 24.4 2.1E+02 0.0024 17.5 2.8 16 51-66 126-141 (159)
94 PF20452.2 ; Calmod_bind_C ; Ca 24.0 2.3E+02 0.0026 15.7 3.5 21 44-64 3-23 (60)
95 7CT3_A Mutual gliding motility 23.9 2E+02 0.0023 16.8 2.6 20 48-67 16-35 (120)
96 1LU4_A SOLUBLE SECRETED ANTIGE 23.6 2.2E+02 0.0025 16.0 2.7 15 51-65 102-116 (136)
97 6B87_B TMHC2_E; De novo design 23.2 1.7E+02 0.002 20.0 2.4 19 9-31 45-63 (111)
98 PF10210.13 ; MRP-S32 ; Mitocho 22.8 1.7E+02 0.0019 19.1 2.3 13 53-65 3-15 (96)
99 3EYT_B uncharacterized protein 22.6 2.4E+02 0.0027 16.4 2.8 16 51-66 120-135 (158)
100 4JE1_B Probable thiol peroxida 22.5 2.4E+02 0.0027 17.5 2.9 16 51-66 142-157 (175)
101 5C04_B Putative peroxiredoxin 22.5 2.2E+02 0.0025 16.6 2.6 17 51-67 118-134 (153)
102 1V74_A Colicin D; colicin D - 22.4 2.5E+02 0.0029 15.7 6.3 46 23-68 41-92 (107)
103 2F9S_A Thiol-disulfide oxidore 22.3 2.8E+02 0.0032 16.7 3.1 18 51-68 106-123 (151)
104 1JFU_B THIOL:DISULFIDE INTERCH 22.3 2.4E+02 0.0027 17.1 2.8 15 51-65 146-160 (186)
105 3ZL5_J PEROXIREDOXIN I; OXIDOR 22.2 2.8E+02 0.0033 18.2 3.3 20 51-70 162-181 (222)
106 2M72_A Uncharacterized thiored 22.1 2.9E+02 0.0034 16.3 3.1 21 51-71 114-134 (156)
107 6NU2_a 39S ribosomal protein L 21.9 2.1E+02 0.0024 19.0 2.6 16 50-65 12-27 (108)
108 4O5R_D AhpC component, subunit 21.9 3.1E+02 0.0036 16.6 3.4 22 51-72 121-142 (187)
109 2N5J_A Ribonuclease ZC3H12A; R 21.9 2E+02 0.0023 16.5 2.2 27 3-30 19-45 (49)
110 5Y63_E Alkyl hydroperoxide red 21.8 2.7E+02 0.0031 17.0 3.0 17 51-67 132-148 (183)
111 2B7K_C SCO1 protein; Metalloch 21.7 3.3E+02 0.0038 16.8 3.9 25 41-65 137-161 (200)
112 5ENU_B Alkyl hydroperoxide red 21.7 2.6E+02 0.003 16.8 2.8 17 51-67 128-144 (161)
113 3LEQ_A uncharacterized protein 21.6 2.4E+02 0.0028 16.4 2.7 20 48-67 18-37 (126)
114 4LLR_J Tryparedoxin peroxidase 21.3 2.6E+02 0.003 17.4 2.9 16 51-66 129-144 (197)
115 3ADY_A DotD; 3-layer(bab) sand 21.1 2.5E+02 0.0029 19.3 3.0 18 48-65 125-142 (148)
116 1LY1_A polynucleotide kinase; 21.0 3E+02 0.0035 16.0 3.1 62 9-72 120-181 (181)
117 1PSQ_A probable thiol peroxida 20.8 3.2E+02 0.0037 16.3 3.4 21 51-71 128-148 (163)
118 PF20003.3 ; fvmX5 ; FtsH terna 20.8 5.3E+02 0.0062 18.8 5.3 40 24-64 39-80 (188)
119 2L5O_A Putative thioredoxin; S 20.7 3E+02 0.0035 16.0 3.0 18 51-68 109-126 (153)
120 8AO0_A Photoactive yellow prot 20.6 3E+02 0.0035 16.1 3.0 19 49-67 1-19 (112)
121 PF00578.25 ; AhpC-TSA ; AhpC/T 20.5 1.9E+02 0.0023 16.2 2.1 12 51-62 114-125 (127)
122 1RFZ_D Hypothetical protein AP 20.5 1.8E+02 0.002 20.4 2.2 18 9-30 17-34 (168)
123 4KCE_A Peroxidoxin; Thioredoxi 20.3 2.5E+02 0.0028 18.1 2.7 15 51-65 146-160 (213)
124 4KCE_B Peroxidoxin; Thioredoxi 20.3 2.5E+02 0.0028 18.1 2.7 15 51-65 146-160 (213)
125 4WBJ_A Blr1131 protein; copper 20.3 3.1E+02 0.0036 15.9 4.0 28 41-68 123-150 (164)
126 4WBJ_B Blr1131 protein; copper 20.3 3.1E+02 0.0036 15.9 4.0 28 41-68 123-150 (164)
127 3HDC_A Thioredoxin family prot 20.2 2.9E+02 0.0033 16.5 2.8 19 51-69 118-136 (158)
128 4GQC_D Thiol peroxidase; CXXXX 20.2 2.8E+02 0.0033 16.4 2.8 16 51-66 123-138 (164)
129 3KCM_D Thioredoxin family prot 20.1 3.1E+02 0.0036 16.2 2.9 16 51-66 109-124 (154)
130 PF04461.17 ; DUF520 ; Protein 20.1 1.1E+02 0.0013 22.1 1.2 48 21-71 9-56 (161)
131 1Q98_A Thiol Peroxidase; struc 20.1 3E+02 0.0035 16.5 2.9 16 51-66 132-147 (165)
132 4XRA_E Alkyl hydroperoxide red 20.0 3.5E+02 0.004 16.3 3.2 19 51-69 120-138 (186)
No 1
>PF14076.10 ; DUF4258 ; Domain of unknown function (DUF4258)
Probab=98.36 E-value=4.2e-06 Score=46.88 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=41.6 Template_Neff=10.800
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec----CCCcEE-----EECCCEEEEECCCC-------CEEEEe
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN----ANGTIK-----YQGKRATVVLNQDG-------KVVTVF 65 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~----~~~s~~-----y~g~~atVVlN~~g-------~vVT~~ 65 (72)
+|.|+.+|+. +||++.++|.++|.+|..+... ....+. +.|....||+..+. .|||+|
T Consensus 1 ~t~Ha~~r~~----~r~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~viT~~ 74 (75)
T D5BWQ5_NITHN/3 1 WSKHARKRMR----ERRITTRQVLDVLSKGKIIEGPVRGTTGDWECTLERFVAGDNVVVVVAIETDSAGQPVIIVTTY 74 (75)
T ss_pred CCHHHHHHHH----hCCCCHHHHHHHHhcCceeecccCCCCCCEEEEEEEcCCCCEEEEEEEEEeCCCCCeEEEEEEe
Confidence 5899999999 9999999999999999965442 112222 23455667766542 677776
No 2
>PF12106.12 ; Colicin_E5 ; Colicin E5 ribonuclease domain
Probab=95.59 E-value=0.35 Score=28.23 Aligned_cols=67 Identities=22% Similarity=0.201 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec-----CCCcEEEECC-CEEEEECCCC-CEEEEeec-CCCCC
Q FD01848538_019 2 TGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN-----ANGTIKYQGK-RATVVLNQDG-KVVTVFGK-SRGPE 72 (72)
Q Consensus 2 tg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~-----~~~s~~y~g~-~atVVlN~~g-~vVT~~~~-~~~~~ 72 (72)
..+.....++|. .||.+.+.|.+++.+|...... +.....|.-+ ...||+|... ++|.+... +...|
T Consensus 3 ~~~~~k~~~q~~----~rGw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~vv~~~~tg~iiqv~~~~~~~~w 77 (82)
T M1MKY3_9CLOT/9 3 TKSTQKLSNQMT----QRGWTESTVRDIVSKPYTTRASINKATGNSATVYYNKAGGYVIIDDITKSVVQVSDNINPSTW 77 (82)
T ss_pred ccccHHHHHhhh----hcCCCHHHHHHHhhCCCeeeceecccCCCcceEEEcCCCcEEEEeCCCCCEEEccCCCCCCCC
No 3
>PF04365.17 ; BrnT_toxin ; Ribonuclease toxin, BrnT, of type II toxin-antitoxin system
Probab=95.13 E-value=0.48 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ccHH-HHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec------CCCcEEEEC---CCEEEEE----CCCC-CEEEEeecC
Q FD01848538_019 4 YTRH-GLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN------ANGTIKYQG---KRATVVL----NQDG-KVVTVFGKS 68 (72)
Q Consensus 4 ~t~H-gl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~------~~~s~~y~g---~~atVVl----N~~g-~vVT~~~~~ 68 (72)
+..+ ....+. .+||+.+++.+++.+|..+... +...+.++| ...-+|+ ..+. .+||+|..+
T Consensus 1 wd~~k~~~~~~----khgi~~~ev~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~gr~l~vv~~~~~~~~~~iisa~~~~ 76 (79)
T B6INL0_RHOCS/5 1 WDRQKAEANRR----KHGVCFGDAIPALEDPDRLERIDDRFAYGEERVQTIGAAAGGILFVVTTVNEEETCRILSARRAT 76 (79)
T ss_pred CCHHHHHHHHH----HhCCCHHHHHHHHhCCCceEEEccccccCCeeEEEEEEeCCeEEEEEEEEecCCEEEEEEeeeCC
Q ss_pred CCC
Q FD01848538_019 69 RGP 71 (72)
Q Consensus 69 ~~~ 71 (72)
...
T Consensus 77 ~~e 79 (79)
T B6INL0_RHOCS/5 77 RDE 79 (79)
T ss_pred CCC
No 4
>3U97_A Ribonuclease toxin BrnT; RNAse Sa/RelE small ribonuclease fold, ribonuclease, BrnA, HYDROLASE; HET: MSE; 1.102A {Brucella abortus}
Probab=94.77 E-value=0.18 Score=32.39 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred ccHHH-HHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEE-----EEECCCC----CEEEEeecCC
Q FD01848538_019 4 YTRHG-LNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRAT-----VVLNQDG----KVVTVFGKSR 69 (72)
Q Consensus 4 ~t~Hg-l~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~at-----VVlN~~g----~vVT~~~~~~ 69 (72)
++.|. ...+. .+||+.+++.+++.+|..+.......+..+|.-.. ||+.+.+ .+||+|..+.
T Consensus 38 wd~~k~~~~i~----khgIs~~ev~~~~~~~~~~~~d~e~R~~~iG~~~~gr~l~vv~~~~~~~~~riITa~~a~~ 109 (114)
T 3U97_A 38 WDEPKRQTNIA----KHGLDFADLHFEFFLSAKVFPTKADRLMAIGEFNGLIIIAVIFKPVGSEALSVISMRSASQ 109 (114)
T ss_dssp CCHHHHHHHHH----HHSCCGGGCCHHHHHTSEEEEEETTEEEEEEEETTTEEEEEEEEEETTTEEEEEEEEECCC
T ss_pred cChHHHHHHHH----HhCCCHHHHHHHhhcccEEEeCCCceEEEEEEECCeEEEEEEEEEcCCCeEEEEEceeCCH
No 5
>2FHZ_B Colicin-E5; Protein-Protein Complex, Inhibition of Ribonuclease, IMMUNE SYSTEM, HYDROLASE; 1.15A {Escherichia coli} SCOP: d.243.1.2
Probab=91.43 E-value=1.7 Score=27.60 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHhCC----------------eEEeecCCCcEEEECCCEEEEECCCC-CEEEEeecCCCC
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQNP----------------KKIIENANGTIKYQGKRATVVLNQDG-KVVTVFGKSRGP 71 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~nP----------------~~v~~~~~~s~~y~g~~atVVlN~~g-~vVT~~~~~~~~ 71 (72)
..+|. .||.+.+.|.+++.+| ..+.. +.....|......||+|... +++-+-..+...
T Consensus 19 ~~q~~----~rGwt~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~at~Y~~~g~~Vv~~d~tg~ivqvs~~~~~~ 93 (108)
T 2FHZ_B 19 RGQMP----ERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGR-NDPATVYGSPGKYVVVNDRTGEVTQISDKTDPG 93 (108)
T ss_dssp HHHGG----GTTCCHHHHHHHHHTCEEEEEEEEECGGGSTTTTCCE-EEEEEEEEETTEEEEEETTTCBEEEECCTTCTT
T ss_pred hhcCc----cCCCCHHHHHHHHhcCCcceeecCCCCCCCCCCcCCC-CCCccEeCCCCCEEEEeCCCCCEEEecCCCCCC
Q ss_pred C
Q FD01848538_019 72 E 72 (72)
Q Consensus 72 ~ 72 (72)
|
T Consensus 94 w 94 (108)
T 2FHZ_B 94 W 94 (108)
T ss_dssp C
T ss_pred C
No 6
>7VD7_A toxin; Toxin-Antitoxin complex Ribonuclease, TOXIN, TOXIN-ANTITOXIN complex; 1.43A {Salmonella typhimurium}
Probab=89.66 E-value=4.1 Score=24.02 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ccHH-HHHHHhcCCCCCCCCHHHHHHHHhCCeEEeec-----CCCcEEEE-----CCCEEEEECCCC-------CEEEEe
Q FD01848538_019 4 YTRH-GLNQAIGRNGGKGVNIKDMLDAVQNPKKIIEN-----ANGTIKYQ-----GKRATVVLNQDG-------KVVTVF 65 (72)
Q Consensus 4 ~t~H-gl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~-----~~~s~~y~-----g~~atVVlN~~g-------~vVT~~ 65 (72)
++.+ ...... .+||+.+++.+++.+|..+... +...+..+ |.--.||+-+.+ .+||+|
T Consensus 6 wd~~k~~~~~~----khgi~~~ev~~~~~~~~~~~~~~~~~~~~~r~~~iG~~~~gr~l~vv~~~~~~~~~~~~~iita~ 81 (94)
T 7VD7_A 6 WDANKAKSNLR----KHGVRFEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFDVIRIISAR 81 (94)
T ss_dssp CCHHHHHHHHH----HHSCCHHHHGGGGGSTTCEEEEEEEETTEEEEEEEEEETTTEEEEEEEEEEECSSCEEEEEEEEE
T ss_pred cChHHHHHHHH----HhCCCHHHHHHHhCCCcceeecchhccCChheEEEEEEcCeEEEEEEEEeccccCCcEEEEEEce
Q ss_pred ecC
Q FD01848538_019 66 GKS 68 (72)
Q Consensus 66 ~~~ 68 (72)
+.+
T Consensus 82 ~a~ 84 (94)
T 7VD7_A 82 KAD 84 (94)
T ss_dssp ECC
T ss_pred eCC
No 7
>5D0O_E Outer membrane protein assembly factor BamE; E.coli, Bacterial outer membrane beta barrel assembly machinery, outer membrane biogenesis, protein transport., PROTEIN TRANSPORT; 2.9A {Escherichia coli}
Probab=89.57 E-value=4.9 Score=24.43 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 20 GVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 20 GVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~ 72 (72)
|.|.++|++.+-.|..+...+...+.|.... ..|.++.+|+|+...-.+...+
T Consensus 49 G~t~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~g~V~~~~~~~~~~~ 112 (123)
T 5D0O_E 49 GMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG 112 (123)
T ss_dssp SCBHHHHHHHHCCCSBCCCSSSCEEEEEEEEECTTTCCEEEEEEEEECTTSBEEEEEEECCCC-
T ss_pred CCCHHHHHHHHCCCCccCCCCCceEEEEEeeCCCCCCceEEEEEEEECCCCeEEEEEeCCCCCC
No 8
>4DM5_A Osmotically inducible lipoprotein OsmE; lipoprotein, UNKNOWN FUNCTION; HET: MSE; 1.5A {Pseudomonas aeruginosa PAO1}
Probab=88.70 E-value=7 Score=24.81 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEee-c--CCCcEEEECCC------EEEEECCCCCEEEEeecC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIE-N--ANGTIKYQGKR------ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~-~--~~~s~~y~g~~------atVVlN~~g~vVT~~~~~ 68 (72)
++...+++ + ..|.+.++|+++|-.|..+.. . +...+.|.-.. -.|.+|++|+|+......
T Consensus 16 ~~~~~~~~-i----~~GmT~~eV~~ilG~P~~~~~~~~~~~~~w~Y~~~~~~~~~~~~V~FD~~g~V~~~~~~~ 84 (103)
T 4DM5_A 16 RNEPLVKD-V----EKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLS 84 (103)
T ss_dssp TTSHHHHT-C----CTTCBHHHHHHHHCSCSEEEECSSSSSEEEEEEEEETTEEEEEEEEECTTSBEEEEESSC
T ss_pred CCHHHHHh-c----CCCCCHHHHHHHhCCCceeeeccCCCCcEEEEEECCCCCeecEEEEECCCCcEEEEEECC
No 9
>2YH9_A SMALL PROTEIN A; LIPOPROTEIN, 3D DOMAIN SWAP, MEMBRANE PROTEIN; HET: MSE; 1.8A {ESCHERICHIA COLI}
Probab=86.83 E-value=7.5 Score=23.09 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~ 72 (72)
++.-.++++. -|.+.++|++.|-.|..+...+...+.|.-.. ..|.++++|+++.........+
T Consensus 5 ~~~~~~~~i~-----~G~t~~eV~~~lG~P~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~v~Fd~~g~v~~~~~~~~~~~ 79 (88)
T 2YH9_A 5 LTANDVSKIR-----VGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG 79 (88)
T ss_dssp -----CTTCC-----TTCBHHHHHHHHCSCSEECCTTCSEEEEECCSCTTCCSSSCCEEEEEECTTSBEEEEEEEC----
T ss_pred CCHHHHhcCC-----CCCCHHHHHHHhCCCceeCCCCCCeEEEEEEeecCCCCceEEEEEEEECCCCeEEEEEEcccccC
No 10
>5EKQ_E Outer membrane protein assembly factor BamE; membrane protein, insertase, beta-barrel, outer membrane protein; 3.392A {Escherichia coli (strain K12)}
Probab=83.53 E-value=11 Score=22.22 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 20 GVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 20 GVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~~~~~ 72 (72)
|.+.++|++++-.|..+...+...+.|.... ..|.++++|+++..+-......
T Consensus 30 Gmt~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~g~v~~~~~~~~~~~ 93 (94)
T 5EKQ_E 30 GMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG 93 (94)
T ss_dssp TCCSTTTTTSSCCCSEECCSSSCEEEEEEEEECTTTCCEEEEEEEEECTTSCEEEEEEECSCC-
T ss_pred CCCHHHHHHHhCCCceeCCCCCceEEEEEEEecCCCCceEEEEEEEECCCCcEEEEEECcccCC
No 11
>5I4Q_A Contact-dependent inhibitor A; toxin, antitoxin, elongation factor, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Structure-Function Analysis of; HET: MSE; 2.35A {Escherichia coli}
Probab=80.08 E-value=19 Score=22.51 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEE-ee-c-CCCcEEEECCCEEEEECCCCCEE
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKI-IE-N-ANGTIKYQGKRATVVLNQDGKVV 62 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v-~~-~-~~~s~~y~g~~atVVlN~~g~vV 62 (72)
|+.-.+.+|. +.+|-+....+.++++....+ .. + ..+.++|.+-...|+.|+....|
T Consensus 24 fs~~~~~~m~--~~~R~vP~~il~~~i~~g~~~~~dp~g~~g~~~y~~~~lev~~~~~~~ti 83 (92)
T 5I4Q_A 24 FSKSYYEKLW--EQGRPAPFVQAREVLNSNPKIEPDPRGAPGYLRYEGAGLEMIYNPKTGQV 83 (92)
T ss_dssp EEHHHHHHHH--HTTCCCHHHHHHHHHTSCCEEEECTTCCTTCEEEEETTEEEEEETTTTEE
T ss_pred ccHHHHHHHH--hCCCCChHHHHHHHHhcCCCCCCCCCCCCceeeeecCeeEEEEeCCCCeE
No 12
>PF10715.13 ; REGB_T4 ; T4-page Endoribonuclease RegB
Probab=78.91 E-value=3.7 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN 32 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n 32 (72)
||.|-+||++ +|.+..+.+.+.+++
T Consensus 44 yS~HllDR~I----qReIde~yVf~Lf~k 68 (150)
T REGB_BPT4/2-15 44 YSQHLLDRAI----QREIDETYVFELFHK 68 (150)
T ss_pred echhHHHHHH----HhcCCHHHHHHHHHH
No 13
>2HX6_A Ribonuclease; alpha/beta fold, HYDROLASE; NMR {Enterobacteria phage T4}
Probab=78.55 E-value=4 Score=29.34 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN 32 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n 32 (72)
||.|-+||+| +|.+..+.+.+.+++
T Consensus 45 yS~HllDR~I----qReIde~yVf~Lf~k 69 (153)
T 2HX6_A 45 YSQALLDRAI----QREIDETYVFELFHK 69 (153)
T ss_dssp CCHHHHHHHH----HTSTTCCHHHHHHHH
T ss_pred ecHHHHHHHH----HhcCCHHHHHHHHHH
No 14
>5WAM_B Outer membrane protein assembly factor BamE; beta-barrel assembly machinery, BAM complex, lipoprotein, MEMBRANE PROTEIN; 2.45A {Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)}
Probab=76.99 E-value=24 Score=21.93 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------EEEEECCCCCEEEEeecC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------atVVlN~~g~vVT~~~~~ 68 (72)
++...+++.. .|.+.++|+++|-.|..........+.|.-.. ..|+++ +|+++......
T Consensus 22 ~~~~~~~~l~-----~Gmt~~eV~~~lG~P~~~~~~~~~~w~Y~~~~~~~~~~~~~~~~~v~F~-~g~v~~~~~~~ 91 (108)
T 5WAM_B 22 LEPRAVAALR-----PGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFE-NGVLVRTEGDA 91 (108)
T ss_dssp CCHHHHTTCC-----TTCBHHHHHHHHCCCSCCSSTTSSEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEESHH
T ss_pred CCHHHHHhCC-----CCCCHHHHHHHhCCCceecCCCCCeEEEEEEeecCCcceEEEEEEEEEe-CCEEEEEEecc
No 15
>PF20132.3 ; DUF6522 ; Family of unknown function (DUF6522)
Probab=75.88 E-value=16 Score=23.41 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCCHHHHHHHHhCCeEEee--c--------CCCcEEEECCCEEEEECCCCCEEE
Q FD01848538_019 20 GVNIKDMLDAVQNPKKIIE--N--------ANGTIKYQGKRATVVLNQDGKVVT 63 (72)
Q Consensus 20 GVs~~~I~dav~nP~~v~~--~--------~~~s~~y~g~~atVVlN~~g~vVT 63 (72)
|++++++...++....... + .+-+++|-.....++++++|+++.
T Consensus 22 gl~~~~l~~~mr~G~It~~~E~G~ged~Gr~Rltfr~~~r~~r~~vd~~G~vl~ 75 (87)
T A0A2R4MJ82_9HY 22 NVPPEQVQRLMRENKITSMCETGVGPDTDRHRVTFRHGLALVQLTIDESGEVLS 75 (87)
T ss_pred CCCHHHHHHHHHCCCCeEEEEEecCCCCCeEEEEEEECCeEEEEEECCCCCEEE
No 16
>PF18810.5 ; PBECR2 ; phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2
Probab=69.07 E-value=31 Score=21.91 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCCCCCHHHHHHHHhCCeEEeec-CCCc--------EEEE----CCCEEEEECCCC---CEEEEeecC
Q FD01848538_019 17 GGKGVNIKDMLDAVQNPKKIIEN-ANGT--------IKYQ----GKRATVVLNQDG---KVVTVFGKS 68 (72)
Q Consensus 17 ~~rGVs~~~I~dav~nP~~v~~~-~~~s--------~~y~----g~~atVVlN~~g---~vVT~~~~~ 68 (72)
.+|..-...|.++|++|..|... .... .+|+ .....||++..+ .++|+++.+
T Consensus 42 ~e~~~~~~~l~~~l~~PdeI~~~~~~~~~~~~~~~~~~y~k~~~~~~~~vvv~~~~~~~~v~t~~~~~ 109 (132)
T A0A285M2N7_9HY 42 STRAPALKQLAEAIMDPDEIWVDWEWHDVRKEWILKRRYLRSAPNLAGLLVFEWSQHGWSATTAYNAA 109 (132)
T ss_pred cccHHHHHHHHHHHhCcceeeeeeeecccCCcEEEEEEEEeEcCCceEEEEEEEeCCeEEEEEEeecc
No 17
>7JRK_A Outer membrane protein assembly factor BamE; membrane protein, BAM complex, lipoprotein.; 1.71A {Pseudomonas aeruginosa}
Probab=67.99 E-value=61 Score=22.75 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCE-----------EEEECCCCCEEEEeecCCC
Q FD01848538_019 2 TGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRA-----------TVVLNQDGKVVTVFGKSRG 70 (72)
Q Consensus 2 tg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~a-----------tVVlN~~g~vVT~~~~~~~ 70 (72)
+-++.--+++.. .|.+.++|+..|-+|.....-+...+.|.-... .|.+|.+|+++........
T Consensus 14 ~~vt~d~i~qL~-----~GmTk~qV~~lLG~P~~~~~~~~~~W~Y~y~~~~~~~~~~~~~l~V~Fd~~G~V~~~~~~~~p 88 (154)
T 7JRK_A 14 NVVTQDMIDQLR-----PGMTRRQVRFIMGNPLIVDTFHANRWDYLYSIQPGGGRRQQERVSLFFNDSDQLAGLNGDFMP 88 (154)
T ss_dssp CCCBHHHHHTCC-----TTCBHHHHHHHHCSCSEEEEEEEEEEEEEEBSSTTCCGGGCEEEEEEECTTSBEEEEESCCCS
T ss_pred ccCCHHHHHhCC-----CCCCHHHHHHHHCCCCEEecCCCcEEEEEEEecCCCCCccEEEEEEEECCCCEEEEEEeCCCC
Q ss_pred C
Q FD01848538_019 71 P 71 (72)
Q Consensus 71 ~ 71 (72)
.
T Consensus 89 ~ 89 (154)
T 7JRK_A 89 G 89 (154)
T ss_dssp C
T ss_pred C
No 18
>PF07467.15 ; BLIP ; Beta-lactamase inhibitor (BLIP)
Probab=67.71 E-value=42 Score=20.86 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred hcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----EEEEECCCCCEEEEe
Q FD01848538_019 13 IGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----ATVVLNQDGKVVTVF 65 (72)
Q Consensus 13 ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----atVVlN~~g~vVT~~ 65 (72)
+ .-|.+.++|..+|-.|..........+.|.... ..|-++++|+++...
T Consensus 8 I----~~G~t~~~V~~~lG~p~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~gkv~~~~ 61 (121)
T B5GLC0_STRCL/3 8 I----QFGMDRTLVWQLAGADQSCSDQVERIICYNNPDHYGPQGHFFFNAADKLIHKR 61 (121)
T ss_pred C----CCCCCHHHHHHHHCCCCccCCCceEEEEECCCCCCCCeEEEEEcCCCEEEEEE
No 19
>PF04355.17 ; SmpA_OmlA ; SmpA / OmlA family
Probab=65.64 E-value=31 Score=18.55 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHhcCCCCCCCCHHHHHHHHhCCeEEee-c-CCCcEEEECCC---------EEEEECCCCCEE
Q FD01848538_019 11 QAIGRNGGKGVNIKDMLDAVQNPKKIIE-N-ANGTIKYQGKR---------ATVVLNQDGKVV 62 (72)
Q Consensus 11 r~ig~~~~rGVs~~~I~dav~nP~~v~~-~-~~~s~~y~g~~---------atVVlN~~g~vV 62 (72)
..+ ..|.|.+++.+.+-.|..+.. . ....+.|.... ..|.++.++.++
T Consensus 10 ~~i----~~G~t~~ev~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~v~f~~~~~v~ 68 (71)
T A1K8N9_AZOSB/6 10 SQL----KRGMSREQVRFVLGTPLVVDIFRSNRWDYVYRFKPGNGEPEQRVFSVFFVDDKLDH 68 (71)
T ss_pred Hhc----cCCCCHHHHHHHHCCCeEEeCCCCCeEEEEEEeecCCCCCeEEEEEEEEeCCeeEE
No 20
>PF12554.12 ; MOZART1 ; Mitotic-spindle organizing gamma-tubulin ring associated
Probab=63.27 E-value=26 Score=20.24 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~ 31 (72)
+|+++.-+. +.+ +.||+|+++...++
T Consensus 16 tgLd~e~L~icv~L~----e~GvnPeaLA~vi~ 44 (47)
T N1Q4P1_DOTSN/2 16 THLDRQSLSYCVSLI----ENGVSPESLAKVVV 44 (47)
T ss_pred CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 21
>2PXG_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture, MEMBRANE PROTEIN; NMR {Xanthomonas axonopodis pv. citri}
Probab=60.53 E-value=57 Score=20.54 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCE------------EEEECCCCCEEEEe
Q FD01848538_019 13 IGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRA------------TVVLNQDGKVVTVF 65 (72)
Q Consensus 13 ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~a------------tVVlN~~g~vVT~~ 65 (72)
+ ..|.|.++|.+.|-.|..........+.|.-... .|+++ +|+++...
T Consensus 26 l----~~Gmtk~eV~~~lG~P~~~~~~~~~~w~Y~~~~~~~~~~~~~~~~~~v~f~-~g~l~~~~ 85 (118)
T 2PXG_A 26 L----QVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLARTEIKNFTVFFE-NEQVVRWE 85 (118)
T ss_dssp T----CCCSCHHHHHHHHTSCCCCCTTTCCCEEEEEEETTCSSSSCEEEEEEEEES-SSSEEEEE
T ss_pred C----CCCCCHHHHHHHhCCCCcCCCCCCCeEEEEEEEeeCCCCCcEEEEEEEEEe-CCEEEEEE
No 22
>7TXX_A BA5; Bam complex, outer membrane biogenesis, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, PROTEIN; NMR {Bartonella henselae str. Houston-1}
Probab=56.31 E-value=82 Score=20.36 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----------------EEEEECCCCCEEEEee
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----------------ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----------------atVVlN~~g~vVT~~~ 66 (72)
.+...+++.. -|.+.++|+..+-.|......+...+.|.... ..|.+|++|+++....
T Consensus 36 ~~~~~~~~l~-----~G~t~~eV~~~lG~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~v~Fd~~g~v~~~~~ 110 (147)
T 7TXX_A 36 LDKNALDSIS-----IGSSQEQVILALGTPSLKTKYDNEVFYYISQTRYRGMQFMKTKIIDRKVLAIYFNKNDQVTKIAN 110 (147)
T ss_dssp TSTTGGGGCC-----TTCBHHHHHHHHCCCSEEECSSSCEEEEECCCCSSCCTTSCCSSCCCCEEEEEEETTTEEEEEEE
T ss_pred CCHHHHhhcC-----CCCCHHHHHHHHCCCeeEecCCCceEEEEEEEeecCCcccCCeeEEEEEEEEEECCCCeEEEEEE
Q ss_pred cCCCC
Q FD01848538_019 67 KSRGP 71 (72)
Q Consensus 67 ~~~~~ 71 (72)
.....
T Consensus 111 ~~~~~ 115 (147)
T 7TXX_A 111 YGLQD 115 (147)
T ss_dssp SSEET
T ss_pred ecCCC
No 23
>PF17510.6 ; GP44 ; Gene product 44
Probab=50.40 E-value=55 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.496 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred CcEEEEC--CCEEEEECCCCCEEEEeecC
Q FD01848538_019 42 GTIKYQG--KRATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 42 ~s~~y~g--~~atVVlN~~g~vVT~~~~~ 68 (72)
.|.+|.| ++|+|.+..+ ..+|.|-.+
T Consensus 43 nsVRYk~ate~Ati~~g~~-~~~slWQ~N 70 (108)
T Q5J5Q8_9CAUD/1 43 SSLRFSSASETANISLDDD-RTVCTWQMN 70 (108)
T ss_pred cceeeecccceeEEEeCCC-CeEEEeehh
No 24
>8GZU_61 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8, mitochondrial; Electron transport chain, supercomplex, membrane protein, Tetrahymena thermophila, ELECTRON TRANSPORT; HET: FES, FMN, CU, U10, F3S, HEA, SF4, ADP, HEC, ZN, TPO, FAD, NDP, SEP, HEM; 4.18A {Tetrahymena thermophila SB210}
Probab=48.35 E-value=1.3e+02 Score=24.28 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=0.0 Template_Neff=2.100
Q ss_pred cccHHHHHHHhcCCCCCCCCHHHHHH----HHhCCeEEeecCCCcEEEECCCEEEEECCCC-CEEEEeecCCC
Q FD01848538_019 3 GYTRHGLNQAIGRNGGKGVNIKDMLD----AVQNPKKIIENANGTIKYQGKRATVVLNQDG-KVVTVFGKSRG 70 (72)
Q Consensus 3 g~t~Hgl~r~ig~~~~rGVs~~~I~d----av~nP~~v~~~~~~s~~y~g~~atVVlN~~g-~vVT~~~~~~~ 70 (72)
|+|..-.+++. +-|++|++-.| ++..++.|. -...+.|+-.+ ||.|+.| ||--.|+...+
T Consensus 121 GlTRkEA~~I~----~lGLtP~EeVdfAYl~~N~GlDvf--Y~~Nq~yvARQ--VVTNSKGEKvEvlWp~~~~ 185 (318)
T 8GZU_61 121 GITRKEAEFIT----KLGLSPQEQVDFAYIAYNIGLDIF--YFTNQMFVARQ--VVTNSKGEKVEVLWNAQCY 185 (318)
T ss_pred CCCHHHHHHHH----hcCCChHHHhhHHHHHHHcCCeEE--EeccceeEEEE--EEeCCCCCeEEEEEecccH
No 25
>PF07504.17 ; FTP ; Fungalysin/Thermolysin Propeptide Motif
Probab=48.05 E-value=59 Score=16.27 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CcEEEECCCEEEEECCCCCEEEEeec
Q FD01848538_019 42 GTIKYQGKRATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 42 ~s~~y~g~~atVVlN~~g~vVT~~~~ 67 (72)
......+..+.|.++++|+++.+...
T Consensus 25 ~gi~V~~~~~~~~~~~~g~~~~~~~~ 50 (51)
T H6NTM1_9BACL/1 25 RGVPVYGKYINLHLDSSKKAYAIQNQ 50 (51)
T ss_pred CCEEEeCcEEEEEECCCCcEEEEecc
No 26
>3GMX_A BLP; 2-layer alpha/beta sandwich, PROTEIN BINDING; HET: ACT; 1.05A {Streptomyces clavuligerus} SCOP: d.98.1.0
Probab=47.84 E-value=1.2e+02 Score=19.81 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCC-----EEEEECCCCCEEE
Q FD01848538_019 12 AIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKR-----ATVVLNQDGKVVT 63 (72)
Q Consensus 12 ~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~-----atVVlN~~g~vVT 63 (72)
.| .-|.|.++|...|-.|..+.......+.|.... ..|.++++|++++
T Consensus 11 ~I----~~G~t~~eV~~~lG~p~~~~~~~~~~y~w~~~~~~~~~i~v~f~~~~kl~~ 63 (154)
T 3GMX_A 11 KI----QFGMDRTLVWQLAGADQSCSDQVERIICYNNPDHYGPQGHFFFNAADKLIH 63 (154)
T ss_dssp HC----CTTCBHHHHHHHHTGGGTEEECSSCEEEESSSCTTSSEEEEEECTTSBEEE
T ss_pred hc----CCCCCHHHHHHHHCCCceeeccceEEEEEeCCCCCCCeEEEEEeCCCeEEE
No 27
>PF03849.18 ; Tfb2 ; Transcription factor Tfb2
Probab=43.82 E-value=50 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhC
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQN 32 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~n 32 (72)
+|.+.+.|++ ++|++.+.|++.|+.
T Consensus 326 lt~~Sv~~a~----~~G~t~~~il~fL~~ 350 (354)
T R4XAU2_TAPDE/1 326 LSRHSIRKAL----DNGITADQVILFLTS 350 (354)
T ss_pred ECHHHHHHHH----HCCCCHHHHHHHHHH
No 28
>6L81_B Mitotic-spindle organizing protein 1; gamma tubulin complex, microprotein, microtubule, TRANSLATION; 2.19650999049A {Homo sapiens}
Probab=42.00 E-value=85 Score=20.51 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~ 31 (72)
||+++.-+. +.+ +.||+|+++-++|+
T Consensus 40 TGLd~e~L~ici~Ll----e~GvnPeALA~vI~ 68 (85)
T 6L81_B 40 TGLDMETLSICVRLC----EQGINPEALSSVIK 68 (85)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 29
>7PC1_A StbA; Plasmid conjugation, Plasmid partition, Helix-Turn-Helix, DNA BINDING PROTEIN; HET: MSE; 1.9A {Escherichia coli K-12}
Probab=40.42 E-value=61 Score=18.99 Aligned_cols=19 Identities=16% Similarity=0.559 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~ 31 (72)
+++++ .+|+|-++|.+.|.
T Consensus 30 I~~~~----~~G~s~~~I~~~L~ 48 (72)
T 7PC1_A 30 IDRQV----RAGVQHDDIVETLN 48 (72)
T ss_dssp HHHHH----HTTCCHHHHHHHHH
T ss_pred HHHHH----HCCCCHHHHHHHHH
No 30
>5UDO_D A118 serine integrase; site-specific recombination, coiled-coil, RECOMBINATION; 2.541A {Listeria innocua}
Probab=38.00 E-value=93 Score=21.78 Aligned_cols=37 Identities=11% Similarity=-0.129 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCcccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEe
Q FD01848538_019 1 ITGYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKII 37 (72)
Q Consensus 1 Itg~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~ 37 (72)
+.|.+.+.+.+.+...++...+...|...|+||....
T Consensus 53 ~~g~s~~~i~~~l~~~~~~~w~~~~v~~il~n~~y~G 89 (328)
T 5UDO_D 53 EEEQSITFLQKRLKKLGFKVRTYNRYNNWLTNDLYCG 89 (328)
T ss_dssp -------------------------------------
T ss_pred HcCCCHHHHHHHHHHCCCCcCChhHhhHhhhCcccce
No 31
>3GMV_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, PROTEIN BINDING; HET: TAM; 1.8A {Streptomyces exfoliatus} SCOP: d.98.1.0
Probab=37.75 E-value=1.8e+02 Score=18.97 Aligned_cols=49 Identities=6% Similarity=0.180 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHhcCCCCCCCCHHHHHHHHhCCeEEee-c--CCCcEEEECCC-----EEEEECCCCCEEE
Q FD01848538_019 11 QAIGRNGGKGVNIKDMLDAVQNPKKIIE-N--ANGTIKYQGKR-----ATVVLNQDGKVVT 63 (72)
Q Consensus 11 r~ig~~~~rGVs~~~I~dav~nP~~v~~-~--~~~s~~y~g~~-----atVVlN~~g~vVT 63 (72)
..| .-|.|.++|...+-.|-.+.. . ....+.|.... ..|.++++|++++
T Consensus 9 ~~I----~~G~t~~~V~~~lG~p~~~~~~~~~~~~~~~w~~~~~~~~~~~v~f~~~gk~~~ 65 (156)
T 3GMV_X 9 EQI----QFGMTFDEVWEIGGGEAACDTGGVIGDSILCFTESGDYAPYGGFSFTDEGELWS 65 (156)
T ss_dssp HHC----CTTCBHHHHHHHHTHHHHEECSGGGTTSEEEESSSSTTCCEEEEEECTTSBEEE
T ss_pred HhC----CCCCCHHHHHHHhCCCceeeecCCcceEEEEEeeCCCCcCeEEEEEECCCeEEE
No 32
>4HDE_A SCO1/SenC family lipoprotein; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy; HET: MSE; 1.317A {Bacillus anthracis} SCOP: c.47.1.0, l.1.1.1
Probab=35.73 E-value=1.3e+02 Score=17.64 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred CcEEEECCCEEEEECCCCCEEEEee
Q FD01848538_019 42 GTIKYQGKRATVVLNQDGKVVTVFG 66 (72)
Q Consensus 42 ~s~~y~g~~atVVlN~~g~vVT~~~ 66 (72)
....+.+--..++|+++|+++-.+.
T Consensus 127 ~~~~~~~~p~~~lid~~g~v~~~~~ 151 (170)
T 4HDE_A 127 ENGQVIHGTSFYLIDQNGKVMKKYS 151 (170)
T ss_dssp TTSCCBCCCEEEEECTTSCEEEEEE
T ss_pred CCCceecccEEEEECCCCcEEEEee
No 33
>6L80_D Mitotic-spindle organizing protein 1; gamma tubulin complex, microprotien, microtubule, TRANSLATION; 2.00049753238A {Schizosaccharomyces pombe (strain 972 / ATCC 24843)}
Probab=35.30 E-value=1.2e+02 Score=20.50 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~ 31 (72)
+|+++..+. |.+ +.||+++++..+++
T Consensus 57 TGLd~EtL~iCvrLl----E~GVnPeALA~vIk 85 (100)
T 6L80_D 57 TELDKTTLSLCISLC----ENNVHPEAIAQIIR 85 (100)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 34
>5IMF_A Bacterioferritin comigratory protein; PrxQ, BCP, Peroxidase, redox, OXIDOREDUCTASE; 1.04A {Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)}
Probab=35.27 E-value=1e+02 Score=18.14 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++-.+.
T Consensus 124 ~~~~id~~g~v~~~~~ 139 (160)
T 5IMF_A 124 STFLLSPEGQVVQAWR 139 (160)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred eEEEECCCCeEEEEEc
No 35
>PF11429.12 ; Colicin_D ; Colicin D
Probab=35.24 E-value=1.3e+02 Score=16.46 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHhCCeEEee-c---CCCcEEEEC--CCEEEEECCCCCEEEEeecC
Q FD01848538_019 23 IKDMLDAVQNPKKIIE-N---ANGTIKYQG--KRATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 23 ~~~I~dav~nP~~v~~-~---~~~s~~y~g--~~atVVlN~~g~vVT~~~~~ 68 (72)
...|.+.+.+|..+.. . ......|.. ....|+++++|+.++.|.-+
T Consensus 28 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ 79 (88)
T A9I254_BORPD/2 28 ESKIKTHISSASTVQQGTYGFVKDSKVFFNSETNNAVVIDGAGNFVTGFKLS 79 (88)
T ss_pred HHHHHHHhhcCCceEEEEEcCCCCeEEEEeCCCCeEEEECCCCCEEEEEEcC
No 36
>4EVM_A Thioredoxin family protein; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; 1.506A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=35.01 E-value=93 Score=17.28 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 107 ~~~lid~~g~i~~~~~ 122 (138)
T 4EVM_A 107 TQAFIDKEGKLVKTHP 122 (138)
T ss_dssp EEEEECTTCCEEEEEE
T ss_pred eEEEECCCCCEEEecC
No 37
>6B9X_B Ragulator complex protein LAMTOR2; Ragulator, Lamtor, SIGNALING PROTEIN; 1.42A {Homo sapiens} SCOP: d.110.7.1, l.1.1.1
Probab=34.27 E-value=1.5e+02 Score=17.67 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019 48 GKRATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~~~~~~~ 71 (72)
|-.+.++++++|.+++........
T Consensus 19 gv~~~~l~~~~G~~i~~~~~~~~~ 42 (126)
T 6B9X_B 19 GVQSTLLLNNEGSLLAYSGYGDTD 42 (126)
T ss_dssp TEEEEEEECTTCCEEEEEECCSSC
T ss_pred CceEEEEECCCCCEEEEecCCCcc
No 38
>PF11399.12 ; DUF3192 ; Protein of unknown function (DUF3192)
Probab=33.89 E-value=1.7e+02 Score=17.41 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCc-----EEEECCC------------EEEEECCCCCEE
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGT-----IKYQGKR------------ATVVLNQDGKVV 62 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s-----~~y~g~~------------atVVlN~~g~vV 62 (72)
++...++++. .|.+.+++...+-.|..+....... +.|.-.. ..|.++ +|+++
T Consensus 26 ~~~~~~~~l~-----~Gmt~~ev~~~lG~P~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~v~F~-~g~vv 95 (104)
T D4ZHN7_SHEVD/3 26 LNRVSLASLS-----LGMTREQVTVLMGRADFNEAYIEKDKEVHVLFYRTQRIKGDGKTTKDECTPVVIS-NNAVI 95 (104)
T ss_pred HhHHhHhhCC-----CCCCHHHHHHHhCCCcEEEEEEeCCcEEEEEEEEcCcccCCCcccccceEEEEEE-CCEEE
No 39
>3ME8_A Putative uncharacterized protein; electron transfer protein, ELECTRON TRANSPORT, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center; 1.5A {Aquifex aeolicus}
Probab=33.32 E-value=1.5e+02 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEEEECCCCCEEEEeecCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~ 71 (72)
+.++||++|+++-.+......
T Consensus 129 ~~~lid~~g~i~~~~~~~~~~ 149 (170)
T 3ME8_A 129 VVVVLSPELQIKDYIYGVNYN 149 (170)
T ss_dssp EEEEECTTSBEEEEEESSSCC
T ss_pred EEEEECCCCeEEEEEecCCCC
No 40
>6HY0_M Major Outer Capsid Protein P8; virus, dsRNA, capsid; 3.5A {Pseudomonas phage phi6}
Probab=32.46 E-value=1.1e+02 Score=21.58 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=0.0 Template_Neff=1.100
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHhCCeEE
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQNPKKI 36 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~nP~~v 36 (72)
+.-.+ +.-+||++|+.|++|--.|
T Consensus 28 ia~~i----gsk~spsailaavk~~pvv 51 (149)
T 6HY0_M 28 IAAAI----GSKVSPSAILAAVKSNPVV 51 (149)
T ss_dssp HCCCC----CCCSSHHHHHHHHHHCHHH
T ss_pred HHHHh----cCCCCHHHHHHHHhcCccc
No 41
>8CWS_B F4132-2 Chain B; DE NOVO DESIGN, genetically encoded, 3D protein crystals, DE NOVO PROTEIN; 4.4A {synthetic construct}
Probab=32.43 E-value=1e+02 Score=19.63 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=0.0 Template_Neff=2.000
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~ 31 (72)
+.|+. .+|+|.+++++.+.
T Consensus 21 l~rlq----k~GsSdedvr~Lir 39 (69)
T 8CWS_B 21 LLRLQ----MTGSSDEDVRRLML 39 (69)
T ss_dssp HHHHH----HTTCCHHHHHHHHH
T ss_pred HHHHH----hhCCCHHHHHHHHH
No 42
>2LJA_A Putative thiol-disulfide oxidoreductase; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC; NMR {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=32.39 E-value=1.3e+02 Score=17.81 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEeecCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~ 71 (72)
..+++|++|+++..+......
T Consensus 111 ~~~~id~~g~v~~~~~~~~~~ 131 (152)
T 2LJA_A 111 RFILLDRDGKIISANMTRPSD 131 (152)
T ss_dssp CEEEECTTSCEEESSCCCTTC
T ss_pred eEEEECCCCCEEEccCCCCCC
No 43
>6N5U_A Protein SCO1 homolog 1, mitochondrial; thioredoxin fold, metal ion, reduced form, metallochaperone, HCC1, METAL BINDING PROTEIN; 2.66A {Arabidopsis thaliana} SCOP: c.47.1.0
Probab=32.26 E-value=1.7e+02 Score=17.12 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred CCCcEEEECCCEEEEECCCCCEEEEee
Q FD01848538_019 40 ANGTIKYQGKRATVVLNQDGKVVTVFG 66 (72)
Q Consensus 40 ~~~s~~y~g~~atVVlN~~g~vVT~~~ 66 (72)
....+.+......+++|++|+++-.+.
T Consensus 123 ~~~~~~~~~~~~~~lid~~g~i~~~~~ 149 (170)
T 6N5U_A 123 EDSDYLVDHSIVMYLMSPEMNFVKFYG 149 (170)
T ss_dssp SSSSEEEEECCCEEEECTTCCEEEEEC
T ss_pred CCCcceeecceEEEEECCCCcEEEEeC
No 44
>7YH1_B Roadblock/LC7 domain protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; HET: ZN; 2.69A {Candidatus Prometheoarchaeum syntrophicum}
Probab=32.12 E-value=1.3e+02 Score=17.41 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019 48 GKRATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~~~~~~~ 71 (72)
|-.+.++++++|.++..+......
T Consensus 19 gv~~~~l~~~~G~~i~~~~~~~~~ 42 (117)
T 7YH1_B 19 GIHGSAIIERYGGIISSTLPGWVN 42 (117)
T ss_dssp TEEEEEEEESSSCEEEECCCTTSC
T ss_pred CeeEEEEEecCCeEEEecCCCCCC
No 45
>7BQB_A NF6; de novo designed protein, DE NOVO PROTEIN; NMR {synthetic construct}
Probab=32.04 E-value=79 Score=21.35 Aligned_cols=14 Identities=57% Similarity=0.762 Sum_probs=0.0 Template_Neff=1.300
Q ss_pred CCCEEEEECCCCCE
Q FD01848538_019 48 GKRATVVLNQDGKV 61 (72)
Q Consensus 48 g~~atVVlN~~g~v 61 (72)
|+..-|.+||||+|
T Consensus 40 ~r~iii~L~~DGKi 53 (106)
T 7BQB_A 40 GKLVIVYLTSDGKV 53 (106)
T ss_dssp TCEEEEEECTTSCE
T ss_pred CcEEEEEECCCCcE
No 46
>3QDR_B Colicin-A; ColA, TolA, Complex, translocation, ColA binds to TolA, Methylation, PROTEIN TRANSPORT-TOXIN complex; HET: MLY; 2.65A {Escherichia coli}
Probab=32.01 E-value=1.1e+02 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred CCCcEEEECCCEEEEECCCCCEE
Q FD01848538_019 40 ANGTIKYQGKRATVVLNQDGKVV 62 (72)
Q Consensus 40 ~~~s~~y~g~~atVVlN~~g~vV 62 (72)
+.....|..+.+.|++|++|..+
T Consensus 2 ~k~g~~~~tP~GkV~in~~G~~~ 24 (63)
T 3QDR_B 2 SKPGDSYNTPWGKVIINAAGQPT 24 (63)
T ss_dssp -----CEEETTEEEECCSTTCCE
T ss_pred CCCCcceeCCCccEEECCCCCeE
No 47
>PF13778.10 ; DUF4174 ; Domain of unknown function (DUF4174)
Probab=31.92 E-value=1.4e+02 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..++++++|++.-.|...
T Consensus 76 ~~~lid~~g~i~~~~~~~ 93 (112)
T F4L4R4_HALH1/2 76 SALLIGKDGTEKLRSKTA 93 (112)
T ss_pred EEEEEcCCCCeeEEEcCC
No 48
>4GRF_A Putative thiol-disulfide oxidoreductase; OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics; HET: GSH; 1.76A {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=31.80 E-value=1.4e+02 Score=17.40 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~ 69 (72)
..+++|++|+++..+....
T Consensus 112 ~~~lid~~g~i~~~~~~~~ 130 (152)
T 4GRF_A 112 HIILVDPEGKIVAKELRGD 130 (152)
T ss_dssp EEEEECTTSBEEECCCCHH
T ss_pred EEEEECCCCCEEEeecCch
No 49
>PF08534.14 ; Redoxin ; Redoxin
Probab=31.59 E-value=1.6e+02 Score=16.62 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~ 69 (72)
..+++|++|+++..+....
T Consensus 108 ~~~lid~~g~v~~~~~~~~ 126 (135)
T Q6AIL8_DESPS/2 108 VGFLVNRLGNVVKRYTGYV 126 (135)
T ss_pred eEEEECCCCcEEEEEeCCC
No 50
>1XZO_A Hypothetical protein ypmQ; thioredoxin-like fold, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, METAL BINDING PROTEIN; HET: CA; 1.702A {Bacillus subtilis} SCOP: c.47.1.10
Probab=31.46 E-value=1.3e+02 Score=18.03 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++++++|+++-.+.
T Consensus 138 ~~~lid~~g~i~~~~~ 153 (174)
T 1XZO_A 138 SFYLVGPDGKVLKDYN 153 (174)
T ss_dssp EEEEECTTSEEEEEEE
T ss_pred EEEEECCCCcEEEEec
No 51
>3DRN_B Peroxiredoxin, bacterioferritin comigratory protein homolog; Peroxiredoxin, Bacterioferritin comigratory protein, OXIDOREDUCTASE; HET: CIT, GOL; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=31.44 E-value=1.3e+02 Score=18.07 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++++++|+++-.+.
T Consensus 113 ~~~lid~~g~i~~~~~ 128 (161)
T 3DRN_B 113 ITFVIDKKGIIRHIYN 128 (161)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCeEEEEEe
No 52
>6L7R_B Mozart1; gamma tubulin complex, microprotien, microtubule, TRANSLATION; 1.84813131157A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
Probab=30.93 E-value=1.6e+02 Score=19.28 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred CcccHHHHH---HHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 2 TGYTRHGLN---QAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 2 tg~t~Hgl~---r~ig~~~~rGVs~~~I~dav~ 31 (72)
||+++.-+. +.+ +.||.|+++-.+|+
T Consensus 32 TGLd~etL~icv~L~----e~GvnPeALA~vI~ 60 (86)
T 6L7R_B 32 CHLDRRTLSICISMI----ENGVNPEALANVIK 60 (86)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HCCCCHHHHHHHHH
No 53
>PF19416.3 ; Astro_VPg ; Astrovirus VPg protein
Probab=30.53 E-value=1.5e+02 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav~ 31 (72)
||.-..++++ ..|++++.|.+++.
T Consensus 34 ~TEEEY~eLl----e~G~s~eeIr~~v~ 57 (95)
T NS1A_TASV1/795 34 LTEEEYNKMV----EDGFSPDEIKEVVD 57 (95)
T ss_pred CCHHHHHHHH----HCCCCHHHHHHHHH
No 54
>2FY6_A Peptide methionine sulfoxide reductase msrA/msrB; PILB, Cytochrome maturation protein, Thioredoxin, Methionine sulfoxide reductase, OXIDOREDUCTASE; 1.9A {Neisseria meningitidis} SCOP: c.47.1.10
Probab=30.49 E-value=1.4e+02 Score=16.96 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 109 ~~~~id~~g~i~~~~~ 124 (143)
T 2FY6_A 109 SWALIGKDGDVQRIVK 124 (143)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred eEEEEcCCCCEEEEEc
No 55
>4NMU_B Thiol-disulfide oxidoreductase ResA; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; HET: ACY, EDO, MSE, GOL; 1.35A {Bacillus anthracis} SCOP: c.47.1.0
Probab=30.43 E-value=1.5e+02 Score=17.21 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 115 ~~~~id~~g~i~~~~~ 130 (147)
T 4NMU_B 115 TSFLIDKDGKVVEQII 130 (147)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCCEEEEEe
No 56
>3HCZ_A Possible thiol-disulfide isomerase; APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: SO4; 1.88A {Cytophaga hutchinsonii} SCOP: c.47.1.0, l.1.1.1
Probab=30.33 E-value=1.3e+02 Score=17.36 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..+++|++|+++..+
T Consensus 114 ~~~lid~~g~i~~~~ 128 (148)
T 3HCZ_A 114 VLYVLDKNKVIIAKR 128 (148)
T ss_dssp EEEEECTTCBEEEES
T ss_pred EEEEECCCCeEEEee
No 57
>3IXR_A Bacterioferritin comigratory protein; Alpha Beta Protein, OXIDOREDUCTASE; 1.6A {Xylella fastidiosa} SCOP: c.47.1.0, l.1.1.1
Probab=30.06 E-value=1.3e+02 Score=18.90 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 143 ~~~lid~~g~i~~~~~ 158 (179)
T 3IXR_A 143 STFLIGPTHRIVEAWR 158 (179)
T ss_dssp EEEEECTTSBEEEEEC
T ss_pred eEEEECCCCcEEEEec
No 58
>1WE0_B alkyl hydroperoxide reductase C; Peroxiredoxin, AhpC, OXIDOREDUCTASE; 2.9A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=30.03 E-value=1.7e+02 Score=18.03 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEeecCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~ 69 (72)
+.++||++|+++-.+....
T Consensus 121 ~~~lid~~g~i~~~~~~~~ 139 (187)
T 1WE0_B 121 GTFIIDPDGVIQAIEINAD 139 (187)
T ss_dssp EEEEECTTSBEEEEEEECT
T ss_pred EEEEECCCCcEEEEEecCC
No 59
>PF04322.16 ; DUF473 ; Protein of unknown function (DUF473)
Probab=29.86 E-value=1.1e+02 Score=21.16 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCCHHHHHHHHhCCeEEee
Q FD01848538_019 20 GVNIKDMLDAVQNPKKIIE 38 (72)
Q Consensus 20 GVs~~~I~dav~nP~~v~~ 38 (72)
|+|+..|.|.++|+.+...
T Consensus 8 GIS~~vi~eL~~~~~rTiE 26 (118)
T D1YYL8_METPS/1 8 GLSKESLSELSKRHVRTFE 26 (118)
T ss_pred cCCHHHHHHHHhCCCCEEE
No 60
>4G2E_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics; 1.4A {Sulfolobus tokodaii} SCOP: c.47.1.0, l.1.1.1
Probab=29.84 E-value=1.9e+02 Score=16.87 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~~ 72 (72)
..+++|++|+++-.+.......
T Consensus 121 ~~~~id~~g~i~~~~~~~~~~~ 142 (157)
T 4G2E_A 121 AVFVIDKEGKVRYKWVSDDPTK 142 (157)
T ss_dssp EEEEECTTSBEEEEEEESSTTC
T ss_pred eEEEECCCCeEEEEEecCCCCC
No 61
>2LUS_A Thioredoxion; Cr-TRP16, OXIDOREDUCTASE; NMR {Carcinoscorpius rotundicauda}
Probab=29.45 E-value=1.2e+02 Score=17.45 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..+++|++|+++..+...
T Consensus 111 ~~~lid~~g~i~~~~~~~ 128 (143)
T 2LUS_A 111 ALVIVKKDGTLISMNGRG 128 (143)
T ss_dssp EEEEEETTSCEEESSCHH
T ss_pred EEEEEcCCCCEEeccccc
No 62
>6VPD_A Glutathione peroxidase; glutathione peroxidase, OXIDOREDUCTASE; 2.603A {Hypocrea jecorina (strain QM6a)} SCOP: c.47.1.0
Probab=28.78 E-value=1.4e+02 Score=18.20 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++||++|+++..+.
T Consensus 156 ~~~lid~~g~i~~~~~ 171 (192)
T 6VPD_A 156 EKFLIGRDGKVIGRWA 171 (192)
T ss_dssp CEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEec
No 63
>PF21434.1 ; TerS_N ; Phage G20C small terminase, N-terminal domain
Probab=28.66 E-value=2.1e+02 Score=16.90 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 3 GYTRHGLNQAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav~ 31 (72)
||.+.-+.|.++-+..|.|+.+.++..+.
T Consensus 15 gfdpseiaqtlsldakrkvteeevlhvla 43 (50)
T TERS_BP234/2-5 15 GFDPSEIAQTLSLDAKRKVTEEEVLHVLA 43 (50)
T ss_pred CCCHHHHHHHcCccccCCCCHHHHHHHHH
No 64
>2P31_A Glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, Structural Genomics, Structural Genomics Consortium, SGC, OXIDOREDUCTASE; 2.0A {Homo sapiens} SCOP: c.47.1.0
Probab=28.57 E-value=1.5e+02 Score=18.30 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
+.++|+++|+++..+...
T Consensus 149 ~~~lid~~G~i~~~~~~~ 166 (181)
T 2P31_A 149 WKYLVAPDGKVVGAWDPT 166 (181)
T ss_dssp CEEEECTTSCEEEEECTT
T ss_pred EEEEECCCCCEEEeeCCC
No 65
>2MT4_A Transcription termination/antitermination protein NusA; Transcription factor, NUSA, RNA Polymerase, Transcription; NMR {Bacillus subtilis}
Probab=28.44 E-value=54 Score=21.16 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCCHHHHHHHHhCCeEEeecCCCcEEEEC-CCEEEEECCCCCEEEEe
Q FD01848538_019 18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQG-KRATVVLNQDGKVVTVF 65 (72)
Q Consensus 18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g-~~atVVlN~~g~vVT~~ 65 (72)
++|++.+.+.++++.-+...- .-.|-. .+..|.+|++...+..|
T Consensus 15 ek~i~~e~v~~~le~ai~~a~----~k~~~~~~~i~v~id~~~g~i~i~ 59 (124)
T 2MT4_A 15 EKGISKEIIIEAIEAALISAY----KRNFNQAQNVRVDLNRETGSIRVF 59 (124)
T ss_dssp STTCCHHHHHHHHHHHHHHHH----HTTSTTTCCCEEEEETTTTEEEEE
T ss_pred HhCCCHHHHHHHHHHHHHHHH----HhhCCCCCCEEEEEeCCCCeEEEE
No 66
>PF03698.17 ; UPF0180 ; Uncharacterised protein family (UPF0180)
Probab=28.39 E-value=1e+02 Score=18.83 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCCHHHHHHHHhC
Q FD01848538_019 19 KGVNIKDMLDAVQN 32 (72)
Q Consensus 19 rGVs~~~I~dav~n 32 (72)
+|-|+++|.+.|++
T Consensus 63 ~gks~eeI~~~l~~ 76 (77)
T Q67SE0_SYMTH/7 63 TGKTVEEIVRQVKE 76 (77)
T ss_pred CCCCHHHHHHHHHc
No 67
>2KWP_A Transcription elongation protein nusA; NusA, transcription; NMR {Escherichia coli}
Probab=27.95 E-value=62 Score=21.02 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCCHHHHHHHHhCCeEEeecCCCcEEEEC-CCEEEEECCCCCEEEEe
Q FD01848538_019 18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQG-KRATVVLNQDGKVVTVF 65 (72)
Q Consensus 18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g-~~atVVlN~~g~vVT~~ 65 (72)
+++++.+.+.++++.-+...- ...|-. .+..|.+|++...+..|
T Consensus 15 ek~i~~e~v~~~i~~al~~a~----~k~~~~~~~~~v~id~~~g~i~i~ 59 (129)
T 2KWP_A 15 EKALPREKIFEALESALATAT----KKKYEQEIDVRVQIDRKSGDFDTF 59 (129)
T ss_dssp HHCCCHHHHHHHHHHHHHHHH----HHHHCSCCCEEEEEETTTTEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHHH----HHhcCCCCcEEEEEECCCCeEEEE
No 68
>7UR8_A 170_h_ob; DE NOVO DESIGN, Beta-barrel, Protein binder, DE NOVO PROTEIN; 1.5A {synthetic construct}
Probab=27.94 E-value=1.4e+02 Score=18.81 Aligned_cols=15 Identities=47% Similarity=0.869 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred EEECCCCCEEEEeec
Q FD01848538_019 53 VVLNQDGKVVTVFGK 67 (72)
Q Consensus 53 VVlN~~g~vVT~~~~ 67 (72)
|++|.+|++.-+.++
T Consensus 50 vivnedgkllhvqgs 64 (72)
T 7UR8_A 50 VIVNEDGKLLHVQGS 64 (72)
T ss_dssp EEECTTCCEEECCCC
T ss_pred EEEcCCCCEEEEecc
No 69
>2R37_B Glutathione peroxidase 3; GLUTATHIONE, PEROXIDASE, PLASMA, STRUCTURAL GENOMICS CONSORTIUM, SGC, Oxidoreductase, Secreted, Selenium, Selenocysteine; 1.85A {Homo sapiens} SCOP: c.47.1.0
Probab=27.92 E-value=1.5e+02 Score=20.26 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..++||++|+++..|...
T Consensus 161 ~~~lid~~G~i~~~~~~~ 178 (207)
T 2R37_B 161 EKFLVGPDGIPIMRWHHR 178 (207)
T ss_dssp CEEEECTTSCEEEEECTT
T ss_pred eEEEeCCCCcEEEEecCC
No 70
>PF12244.12 ; DUF3606 ; Protein of unknown function (DUF3606)
Probab=27.71 E-value=1.1e+02 Score=17.07 Aligned_cols=12 Identities=25% Similarity=0.482 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCHHHHHHHHh
Q FD01848538_019 20 GVNIKDMLDAVQ 31 (72)
Q Consensus 20 GVs~~~I~dav~ 31 (72)
|||++.+.+|++
T Consensus 29 ~vs~~~l~~av~ 40 (53)
T C4LBJ3_TOLAT/5 29 GCTDRELAAAVR 40 (53)
T ss_pred CCCHHHHHHHHH
No 71
>2B1L_B Thiol:disulfide interchange protein dsbE; Comparison with the E.coli CcmG, folding topology change, OXIDOREDUCTASE; 1.9A {Escherichia coli} SCOP: c.47.1.10
Probab=27.65 E-value=1.8e+02 Score=16.23 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..+++|++|+++..+..
T Consensus 89 ~~~~~d~~g~i~~~~~g 105 (129)
T 2B1L_B 89 ETFLIDGNGIIRYRHAG 105 (129)
T ss_dssp EEEEECTTSCEEEEEES
T ss_pred EEEEECCCCcEEEEEcC
No 72
>3LOR_B Thiol-disulfide isomerase and thioredoxins; Thiol, isomerase, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative; HET: MSE; 2.2A {Corynebacterium glutamicum}
Probab=27.44 E-value=1.8e+02 Score=16.88 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 123 ~~~lid~~g~i~~~~~ 138 (160)
T 3LOR_B 123 SIILADRKGRIRQVQF 138 (160)
T ss_dssp EEEEECTTCBEEEEEE
T ss_pred EEEEEcCCCcEEEEEe
No 73
>2YZH_B Probable thiol peroxidase; Redox protein, Antioxidant, Oxidoreductase, Peroxidase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses; HET: SO4; 1.85A {Aquifex aeolicus} SCOP: c.47.1.0, l.1.1.1
Probab=27.24 E-value=1.5e+02 Score=18.72 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
+.+++|++|+++..+
T Consensus 135 ~~~lid~~g~i~~~~ 149 (171)
T 2YZH_B 135 AVFIIDKEGKVAYVQ 149 (171)
T ss_dssp EEEEECTTSBEEEEE
T ss_pred EEEEECCCCeEEEEE
No 74
>PF13154.10 ; DUF3991 ; Protein of unknown function (DUF3991)
Probab=27.10 E-value=2.1e+02 Score=16.50 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCC
Q FD01848538_019 18 GKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 18 ~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~ 69 (72)
.|+++++.|...+...+.... ..+...|.+.+ .+|+++-+.-.+.
T Consensus 6 ~R~I~~~~i~~~~~~g~i~~d-~~~n~vF~~~d------~~g~~~g~~~rg~ 50 (71)
T A7IQ02_XANP2/1 6 ERALSDATIRAAIRHDRLREG-PHGSMWAAHTD------DAGLVTGWEERGP 50 (71)
T ss_pred hcCCCHHHHHHHHHCCCEEEC-CCCCEEEEEeC------CCCCEEEEEEeCC
No 75
>2H30_A Peptide methionine sulfoxide reductase msrA/msrB; reduced, methionine sulfoxide, thiol-disulfide exchange, OXIDOREDUCTASE; HET: MSE; 1.6A {Neisseria gonorrhoeae} SCOP: c.47.1.10
Probab=27.00 E-value=1.8e+02 Score=17.11 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..++++++|+++..+..
T Consensus 124 ~~~lid~~g~i~~~~~g 140 (164)
T 2H30_A 124 SWALIGKDGDVQRIVKG 140 (164)
T ss_dssp EEEEECTTSCEEEEEES
T ss_pred EEEEEcCCCcEEEEEcC
No 76
>7F8M_D Robl_LC7 domain-containing protein; Asgard archaea, MGLB, roadblock, UNKNOWN FUNCTION; 2.14A {Candidatus Thorarchaeota archaeon SMTZ1-45}
Probab=26.92 E-value=1.8e+02 Score=16.82 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCEEEEECCCCCEEEEeecCC
Q FD01848538_019 48 GKRATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~~~~~ 69 (72)
|-.+.++++++|.++..+....
T Consensus 20 gv~~~~~~~~~G~~i~~~~~~~ 41 (120)
T 7F8M_D 20 GVEGAALVSADGLMISSALPET 41 (120)
T ss_dssp TEEEEEEEETTSCEEEECSCTT
T ss_pred CeeEEEEEcCCCeEEEEeCCcC
No 77
>2B5Y_A YkuV protein; Thioredoxin-like, OXIDOREDUCTASE; NMR {Bacillus subtilis} SCOP: c.47.1.10
Probab=26.66 E-value=2.2e+02 Score=16.38 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..++++++|+++..+...
T Consensus 113 ~~~lid~~g~i~~~~~~~ 130 (148)
T 2B5Y_A 113 AYYVFDKTGQLRHFQAGG 130 (148)
T ss_dssp EEEEECTTSBEEEEEECC
T ss_pred EEEEECCCCcEEEEEecC
No 78
>PF20029.3 ; DUF6436 ; Domain of unknown function (DUF6436)
Probab=26.35 E-value=1.3e+02 Score=16.35 Aligned_cols=11 Identities=9% Similarity=0.555 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred EEEECCCCCEE
Q FD01848538_019 52 TVVLNQDGKVV 62 (72)
Q Consensus 52 tVVlN~~g~vV 62 (72)
.+|+|++++++
T Consensus 6 ~~vid~~~~l~ 16 (59)
T Q88CL8_PSEPK/1 6 VAIWDRQGRLA 16 (59)
T ss_pred EEEECCCCcEE
No 79
>3KIJ_C Probable glutathione peroxidase 8; Human PDI-peroxidase, glutathione peroxidase, Membrane, Oxidoreductase, Peroxidase, Transmembrane; 1.8A {Homo sapiens} SCOP: c.47.1.0
Probab=26.27 E-value=1.7e+02 Score=17.80 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
+.+++|++|+++-.+
T Consensus 138 ~~~lid~~g~i~~~~ 152 (180)
T 3KIJ_C 138 WKYLVNPEGQVVKFW 152 (180)
T ss_dssp CEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEe
No 80
>2BMX_A ALKYL HYDROPEROXIDASE C; PEROXIREDOXIN, ANTIOXIDANT DEFENSE SYSTEM, MYCOBACTERIUM TUBERCULOSIS, OXIDOREDUCTASE, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS; HET: MSE; 2.4A {MYCOBACTERIUM TUBERCULOSIS} SCOP: c.47.1.10
Probab=25.84 E-value=2.4e+02 Score=17.58 Aligned_cols=21 Identities=10% Similarity=0.204 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEeecCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~ 71 (72)
..+++|++|+++..+......
T Consensus 134 ~~~lid~~g~v~~~~~~~~~~ 154 (195)
T 2BMX_A 134 VTFIVDPNNEIQFVSATAGSV 154 (195)
T ss_dssp EEEEECTTSBEEEEEEECTTC
T ss_pred EEEEECCCCeEEEEEecCCCC
No 81
>4YGT_A Uncharacterized protein YjgB; putative secreted lipoprotein, the first structural representative of PF14172 family, Structural Genomics, Joint Center for Structural; HET: MSE, EDO; 2.13A {Bacillus subtilis}
Probab=25.80 E-value=3.3e+02 Score=18.27 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CHHHHHHHHhCCeEEeecCCCcEEEECC-----CEEEEECCCCCEEEEe
Q FD01848538_019 22 NIKDMLDAVQNPKKIIENANGTIKYQGK-----RATVVLNQDGKVVTVF 65 (72)
Q Consensus 22 s~~~I~dav~nP~~v~~~~~~s~~y~g~-----~atVVlN~~g~vVT~~ 65 (72)
+.++|.+.+-.|..... ..+.+.|... ...+-+|++++++...
T Consensus 45 t~~~V~~~~G~P~~~~~-~~g~~~~y~~~~g~~~~~~~~d~~~~v~~i~ 92 (160)
T 4YGT_A 45 TKGDVHAAFGEPERPVG-GDNRFDLYHWNMGQPGYGFSYHKDMTISEIR 92 (160)
T ss_dssp BHHHHHHHHCSCSBCSB-TTBCSEEECCBTTBCEEEEEECTTSBEEEEE
T ss_pred CHHHHHHHhCCCCeeec-CCCeEEEeecCCcccEEEEEEcCCCeEEEEE
No 82
>1Y9I_C low temperature requirement C protein; Structural Genomics, Protein Structure Initiative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, Helical; HET: MSE; 1.8A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=25.63 E-value=1.4e+02 Score=21.41 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019 4 YTRHGLNQAIGRNGGKGVNIKDMLDAV 30 (72)
Q Consensus 4 ~t~Hgl~r~ig~~~~rGVs~~~I~dav 30 (72)
+.+.-++|.. +|||+.++|.+++
T Consensus 10 ~~~~v~~~L~----erGItiedi~~~~ 32 (178)
T 1Y9I_C 10 LESKARSWLI----ERGVEIDDIAELV 32 (178)
T ss_dssp HHHHHHHHHH----HTTCCHHHHHHHH
T ss_pred HHHHHHHHHH----HCCCCHHHHHHHH
No 83
>1Z5Y_E Thiol:disulfide interchange protein dsbE; DSBD, N-TERMINAL DOMAIN, IMMUNOGLOBULIN-LIKE, CCMG, THIOREDOXIN-LIKE, DISULFIDE-LINKED, OXIDOREDUCTASE-BIOSYNTHETIC PROTEIN COMPLEX; HET: EDO; 1.94A {Escherichia coli} SCOP: c.47.1.10
Probab=25.28 E-value=1.9e+02 Score=17.04 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++..+.
T Consensus 103 ~~~~i~~~g~i~~~~~ 118 (149)
T 1Z5Y_E 103 ETFLIDGNGIIRYRHA 118 (149)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCeEEEEee
No 84
>4PQ1_A Putative electron transport related protein; Thioredoxin-like region, reductant, oxidant, Oxidoreductase; 2.097A {Corynebacterium diphtheriae}
Probab=25.20 E-value=2.4e+02 Score=16.50 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..+++|++|+++-.+...
T Consensus 127 ~~~lid~~g~i~~~~~~~ 144 (158)
T 4PQ1_A 127 TTIVLDKQHRPAAVFLRE 144 (158)
T ss_dssp EEEEECTTSCEEEEESSC
T ss_pred EEEEECCCCCEEEEEeCC
No 85
>7WET_A Peroxiredoxin-1; Complex, Inhibitor, Peroxiredoxin, OXIDOREDUCTASE; HET: AQR; 1.76A {Homo sapiens}
Probab=25.11 E-value=2.1e+02 Score=17.04 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++++++|+++-.+.
T Consensus 129 ~~~lid~~g~i~~~~~ 144 (175)
T 7WET_A 129 GLFIIDDKGILRQITV 144 (175)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred eEEEECCCCcEEEEEe
No 86
>3P7X_C Probable thiol peroxidase; THIOREDOXIN FOLD, OXIDOREDUCTASE, PEROXIDASE; HET: SO4, PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=24.98 E-value=1.8e+02 Score=17.64 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..+++|++|+++-.+
T Consensus 131 ~~~lid~~g~i~~~~ 145 (166)
T 3P7X_C 131 AVFVLDADNKVVYKE 145 (166)
T ss_dssp EEEEECTTCBEEEEE
T ss_pred EEEEECCCCEEEEEE
No 87
>PF16816.9 ; DotD ; DotD protein
Probab=24.89 E-value=2e+02 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCEEEEECCCCCEEEEe
Q FD01848538_019 48 GKRATVVLNQDGKVVTVF 65 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~ 65 (72)
|..|.|+++++.++|...
T Consensus 105 g~~A~v~v~~~~~~i~l~ 122 (123)
T Q5ZS45_LEGPH/3 105 GKKASIHVYPNSQVVELR 122 (123)
T ss_pred CCCEEEEEeCCCCEEEEE
No 88
>PF18039.5 ; UBA_6 ; UBA-like domain
Probab=24.86 E-value=1.6e+02 Score=16.18 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019 3 GYTRHGLNQAIGRNGGKGVNIKDMLDAV 30 (72)
Q Consensus 3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav 30 (72)
||+..-+..++.+- ++.+...++++.+
T Consensus 12 Gys~~q~~~vl~kl-g~~~~~n~~L~eL 38 (42)
T H2TPR0_TAKRU/1 12 GYSTAQVQAIQQQF-GPNTDTDKVLGEL 38 (42)
T ss_pred CCCHHHHHHHHHHH-CCCCCccHHHHHH
No 89
>PF20317.2 ; HTH_60 ; Helix-turn-helix domain
Probab=24.80 E-value=2.1e+02 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHHhCCeEEe
Q FD01848538_019 3 GYTRHGLNQAIGRNGGKGVNIKDMLDAVQNPKKII 37 (72)
Q Consensus 3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav~nP~~v~ 37 (72)
|+|..-+.+.. ||..+++.+.+++|..+.
T Consensus 88 ~ls~etIA~~a------~v~~~dl~~fl~d~~~v~ 116 (140)
T A0A0X8G3A4_9FI 88 GLKLETFAAYA------NVPLEEVQLFLAHPEQVE 116 (140)
T ss_pred CCCHHHHHHHc------CCCHHHHHHHHHCcccCC
No 90
>3EUR_A uncharacterized protein; PSI2, MCSG, conserved protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function; HET: MSE; 1.3A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=24.77 E-value=1.3e+02 Score=17.47 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEE
Q FD01848538_019 51 ATVVLNQDGKVV 62 (72)
Q Consensus 51 atVVlN~~g~vV 62 (72)
..++++++|+++
T Consensus 116 ~~~~id~~g~i~ 127 (142)
T 3EUR_A 116 TLYLLDKNKTVL 127 (142)
T ss_dssp EEEEECTTCBEE
T ss_pred EEEEECCCCeEE
No 91
>3IA1_B Thio-disulfide isomerase/thioredoxin; OXIDOREDUCTASE, DISULFIDE ISOMERASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR; 1.76A {Thermus thermophilus}
Probab=24.77 E-value=2e+02 Score=16.99 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..+++|++|+++-.+..
T Consensus 112 ~~~lid~~g~i~~~~~g 128 (154)
T 3IA1_B 112 WTFVVDREGKVVALFAG 128 (154)
T ss_dssp EEEEECTTSEEEEEEES
T ss_pred EEEEECCCCcEEEEeCC
No 92
>2LS5_A Uncharacterized protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology; NMR {Bacteroides thetaiotaomicron} SCOP: c.47.1.0, l.1.1.1
Probab=24.69 E-value=1.9e+02 Score=16.98 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++-.+.
T Consensus 117 ~~~lid~~g~i~~~~~ 132 (159)
T 2LS5_A 117 RNVLIDREGKIVKLTR 132 (159)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred eEEEECCCCcEEEeec
No 93
>PF09695.14 ; YtfJ_HI0045 ; Bacterial protein of unknown function (YtfJ_HI0045)
Probab=24.35 E-value=2.1e+02 Score=17.48 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++-.+.
T Consensus 126 ~~~lid~~g~i~~~~~ 141 (159)
T Q87JM8_VIBPA/2 126 AIIVQNKQGEILFVKE 141 (159)
T ss_pred EEEEEcCCCeEEEEEe
No 94
>PF20452.2 ; Calmod_bind_C ; Calmodulin binding protein C-terminal domain
Probab=23.98 E-value=2.3e+02 Score=15.70 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEECCCEEEEECCCCCEEEE
Q FD01848538_019 44 IKYQGKRATVVLNQDGKVVTV 64 (72)
Q Consensus 44 ~~y~g~~atVVlN~~g~vVT~ 64 (72)
+.|.+++..+++|+-++++-+
T Consensus 3 y~y~~~~~~~~fn~v~~v~~~ 23 (60)
T A0A3B6PHL1_WHE 3 YVFKSEGCDVIFSPIGEILAA 23 (60)
T ss_pred EEEccCCeEEEECCCceEEEE
No 95
>7CT3_A Mutual gliding motility protein C (MglC); Roadblock/LC7 domain, CYTOSOLIC PROTEIN; HET: MSE; 1.85A {Myxococcus xanthus DK 1622}
Probab=23.88 E-value=2e+02 Score=16.84 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCCEEEEECCCCCEEEEeec
Q FD01848538_019 48 GKRATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~~~ 67 (72)
|=.+.++++.+|.++.....
T Consensus 16 gv~~~~l~~~~G~~i~~~~~ 35 (120)
T 7CT3_A 16 GALACSVMGFDGISVDTFQK 35 (120)
T ss_dssp TEEEEEEEETTSCEEEEEEC
T ss_pred CeeEEEEecCCceeeeEeec
No 96
>1LU4_A SOLUBLE SECRETED ANTIGEN MPT53; THIOREDOXIN-LIKE FOLD, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, OXIDOREDUCTASE; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.55 E-value=2.2e+02 Score=15.99 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..++++++|+++..+
T Consensus 102 ~~~~~d~~g~i~~~~ 116 (136)
T 1LU4_A 102 AFVFYRADGTSTFVN 116 (136)
T ss_dssp EEEEECTTSCEEEEC
T ss_pred eEEEECCCCcEEEEe
No 97
>6B87_B TMHC2_E; De novo design, transmembrane protein, helical bundle, dimer, MEMBRANE PROTEIN; 2.947A {synthetic construct}
Probab=23.15 E-value=1.7e+02 Score=20.03 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHh
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQ 31 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~ 31 (72)
++|.. .+|+|.+++.+.++
T Consensus 45 lerlq----reGsSdedvreLlr 63 (111)
T 6B87_B 45 LERLQ----REGSSDEDVRELLR 63 (111)
T ss_dssp HHHHH----HHTCCHHHHHHHHH
T ss_pred HHHHH----HcCCCHHHHHHHHH
No 98
>PF10210.13 ; MRP-S32 ; Mitochondrial 28S ribosomal protein S32
Probab=22.84 E-value=1.7e+02 Score=19.06 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred EEECCCCCEEEEe
Q FD01848538_019 53 VVLNQDGKVVTVF 65 (72)
Q Consensus 53 VVlN~~g~vVT~~ 65 (72)
|++..||.+|-||
T Consensus 3 i~~t~dg~tivcw 15 (96)
T A0A2I3GYF6_NOM 3 LALTSDGRTIVCY 15 (96)
T ss_pred eEeCCCCCEEEEE
No 99
>3EYT_B uncharacterized protein SPOA0173; Thioredoxin-like superfamily protein SPOA0173, SILICIBACTER POMEROYI DSS, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for; HET: EDO, ACY, MSE; 1.95A {Silicibacter pomeroyi}
Probab=22.58 E-value=2.4e+02 Score=16.43 Aligned_cols=16 Identities=6% Similarity=0.206 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++-.+.
T Consensus 120 ~~~lid~~g~i~~~~~ 135 (158)
T 3EYT_B 120 SLLLIDKAGDLRAHHF 135 (158)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCcEEEEec
No 100
>4JE1_B Probable thiol peroxidase; SSGCID, THIOL PEROXIDASE, Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics; 1.4A {Burkholderia cenocepacia} SCOP: c.47.1.10
Probab=22.54 E-value=2.4e+02 Score=17.48 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++||++|+++-.+.
T Consensus 142 ~~~lid~~g~i~~~~~ 157 (175)
T 4JE1_B 142 AVVVLDAQDKVIHAEL 157 (175)
T ss_dssp EEEEECTTCBEEEEEE
T ss_pred EEEEECCCCeEEEEEe
No 101
>5C04_B Putative peroxiredoxin MT2298; OXIDOREDUCTASE, 1-cys peroxiredoxin, peroxiredoxin, thioredoxin fold, Mycobacterium tuberculosis, active site mutant; 1.45A {Mycobacterium tuberculosis}
Probab=22.51 E-value=2.2e+02 Score=16.60 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..+++|++|+++-.+..
T Consensus 118 ~~~lid~~g~i~~~~~~ 134 (153)
T 5C04_B 118 GTFVVDRSGIIRFAEMK 134 (153)
T ss_dssp EEEEECTTSBEEEEEEE
T ss_pred eEEEECCCCeEEEEecC
No 102
>1V74_A Colicin D; colicin D - ImmD complex, cytotoxicity, transfer RNase, protein-protein inhibition, ANTIBIOTIC-IMMUNE SYSTEM COMPLEX; HET: 1PE; 2.0A {Escherichia coli} SCOP: d.243.1.1
Probab=22.41 E-value=2.5e+02 Score=15.67 Aligned_cols=46 Identities=9% Similarity=0.264 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred HHHHHHHHhCCeEEee-c---CCCcEEEE--CCCEEEEECCCCCEEEEeecC
Q FD01848538_019 23 IKDMLDAVQNPKKIIE-N---ANGTIKYQ--GKRATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 23 ~~~I~dav~nP~~v~~-~---~~~s~~y~--g~~atVVlN~~g~vVT~~~~~ 68 (72)
..+|.+.+.+|..+.. . ......|. .....|+.+++|+.++.|..+
T Consensus 41 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ 92 (107)
T 1V74_A 41 RDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN 92 (107)
T ss_dssp HHHHHHHHHCTTCEECCBCTTSTTCEEEECTTTCEEEEECTTSCEEEEEECC
T ss_pred HHHHHHHhhCCCceeeeEEcCCCCeEEEeeCCCCcEEEECCCCCEEEEEEcC
No 103
>2F9S_A Thiol-disulfide oxidoreductase resA; Thioredoxin-like protein, Oxidoreductase; HET: MSE; 1.401A {Bacillus subtilis} SCOP: c.47.1.10
Probab=22.31 E-value=2.8e+02 Score=16.73 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..++++++|+++..+...
T Consensus 106 ~~~lid~~g~i~~~~~g~ 123 (151)
T 2F9S_A 106 TTFLINPEGKVVKVVTGT 123 (151)
T ss_dssp EEEEECTTSEEEEEEESC
T ss_pred EEEEECCCCcEEEEEecC
No 104
>1JFU_B THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA; THIOREDOXIN-LIKE, DOUBLE DISULFIDE BRIDGE, MEMBRANE PROTEIN; 1.6A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=22.28 E-value=2.4e+02 Score=17.15 Aligned_cols=15 Identities=13% Similarity=0.415 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..+++|++|+++-.+
T Consensus 146 ~~~lid~~g~v~~~~ 160 (186)
T 1JFU_B 146 TSVLVDPQGCEIATI 160 (186)
T ss_dssp EEEEECTTSBEEEEE
T ss_pred EEEEECCCCcEEEEE
No 105
>3ZL5_J PEROXIREDOXIN I; OXIDOREDUCTASE, PEROXIDASE, SCHISTOSOMIASIS, CHAPERONE, THIOREDOXIN FOLD; HET: PEG, SO4; 2.493A {SCHISTOSOMA MANSONI} SCOP: c.47.1.0
Probab=22.23 E-value=2.8e+02 Score=18.20 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEECCCCCEEEEeecCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRG 70 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~ 70 (72)
..++||++|+++..+.....
T Consensus 162 ~~~lid~~g~i~~~~~~~~~ 181 (222)
T 3ZL5_J 162 GLFIIDPNGILRQITINDKP 181 (222)
T ss_dssp EEEEECTTSBEEEEEEECTT
T ss_pred EEEEECCCCeEEEEEecCCC
No 106
>2M72_A Uncharacterized thioredoxin-like protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology; NMR {Porphyromonas gingivalis} SCOP: c.47.1.0, l.1.1.1
Probab=22.06 E-value=2.9e+02 Score=16.28 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEEEECCCCCEEEEeecCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~ 71 (72)
..++++++|+++..+......
T Consensus 114 ~~~lid~~g~i~~~~~~~~~~ 134 (156)
T 2M72_A 114 AVFIVDGNGKIVYNHTGYTEG 134 (156)
T ss_dssp EEEEECTTSSEEEEEECCCSS
T ss_pred EEEEECCCCeEEEeecCCCCC
No 107
>6NU2_a 39S ribosomal protein L42, mitochondrial; mitochondrial ribosome recycling Factor, mtRRF, 55S, RIBOSOME; HET: MG; 3.9A {Homo sapiens}
Probab=21.93 E-value=2.1e+02 Score=19.01 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred CEEEEECCCCCEEEEe
Q FD01848538_019 50 RATVVLNQDGKVVTVF 65 (72)
Q Consensus 50 ~atVVlN~~g~vVT~~ 65 (72)
+..|++..+|.+|-+|
T Consensus 12 ~~~i~vt~dg~tivcw 27 (108)
T 6NU2_a 12 NVELALTSDGRTIVCY 27 (108)
T ss_pred cceEEEcCCCCEEEEE
No 108
>4O5R_D AhpC component, subunit of alkylhydroperoxide reductase; OXIDOREDUCTASE, hydrogen peroxide; 3.33A {Escherichia coli}
Probab=21.92 E-value=3.1e+02 Score=16.56 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~~ 72 (72)
..++++++|+++-.+.......
T Consensus 121 ~~~lid~~g~i~~~~~~~~~~~ 142 (187)
T 4O5R_D 121 ATFVVDPQGIIQAIEVTAEGIG 142 (187)
T ss_dssp EEEEECTTSBEEEEEEECTTCC
T ss_pred eEEEECCCCeEEEEEEeCCCCC
No 109
>2N5J_A Ribonuclease ZC3H12A; Regnase, Regnase-1, Zc3h12a, HYDROLASE; NMR {Mus musculus}
Probab=21.91 E-value=2e+02 Score=16.46 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019 3 GYTRHGLNQAIGRNGGKGVNIKDMLDAV 30 (72)
Q Consensus 3 g~t~Hgl~r~ig~~~~rGVs~~~I~dav 30 (72)
||+..-+.+++.+- ++.+...+|++.+
T Consensus 19 GYs~~qi~~vl~kl-g~~~~~n~vL~EL 45 (49)
T 2N5J_A 19 GYSSSEIHSVLQKL-GVQADTNTVLGEL 45 (49)
T ss_dssp TCCHHHHHHHHHHH-TTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-CCCCCccHHHHHH
No 110
>5Y63_E Alkyl hydroperoxide reductase, C subunit; Oxidoreductase, 2Cys peroxiredoxins; 2.87A {Enterococcus faecalis (strain ATCC 700802 / V583)} SCOP: c.47.1.0
Probab=21.77 E-value=2.7e+02 Score=17.04 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..+++|++|+++-.+..
T Consensus 132 ~~~lid~~g~v~~~~~~ 148 (183)
T 5Y63_E 132 ASFIVSPEGDIKSYEIN 148 (183)
T ss_dssp EEEEECTTSBEEEEEEE
T ss_pred EEEEECCCCcEEEEEec
No 111
>2B7K_C SCO1 protein; Metallochaperone, Cytochrome c Oxidase, Sco, Sco1, METAL BINDING PROTEIN; 1.8A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=21.73 E-value=3.3e+02 Score=16.81 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred CCcEEEECCCEEEEECCCCCEEEEe
Q FD01848538_019 41 NGTIKYQGKRATVVLNQDGKVVTVF 65 (72)
Q Consensus 41 ~~s~~y~g~~atVVlN~~g~vVT~~ 65 (72)
...+....--..++||++|+|+-.+
T Consensus 137 ~~~~~~~~~p~~~lid~~g~i~~~~ 161 (200)
T 2B7K_C 137 GQDYLVDHSIFFYLMDPEGQFVDAL 161 (200)
T ss_dssp ----CTTTCCCEEEECTTSCEEEEE
T ss_pred CCceeeecCcEEEEECCCCcEEEEe
No 112
>5ENU_B Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SSGCID, Peroxiredoxin, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE; 1.35A {Burkholderia ambifaria} SCOP: c.47.1.0
Probab=21.73 E-value=2.6e+02 Score=16.78 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEeec
Q FD01848538_019 51 ATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~ 67 (72)
..++++++|+++-.+..
T Consensus 128 ~~~lid~~g~i~~~~~~ 144 (161)
T 5ENU_B 128 STFLIDADGVLRQAWRG 144 (161)
T ss_dssp EEEEECTTSBEEEEEES
T ss_pred eEEEECCCCeEEEEEeC
No 113
>3LEQ_A uncharacterized protein cvnB5; PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, structure genomics, unknown function; HET: MSE; 1.85A {Streptomyces avermitilis}
Probab=21.59 E-value=2.4e+02 Score=16.39 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCCEEEEECCCCCEEEEeec
Q FD01848538_019 48 GKRATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~~~ 67 (72)
|-.+.++++++|.++..+..
T Consensus 18 gv~~~~l~~~~G~~i~~~~~ 37 (126)
T 3LEQ_A 18 EVDHAVVLSEDGLVVSKSTG 37 (126)
T ss_dssp TEEEEEEEETTSCEEEECTT
T ss_pred CeeEEEEEcCCCceeEEecC
No 114
>4LLR_J Tryparedoxin peroxidase; PEROXIREDOXIN, PEROXIDASE, OXIDOREDUCTASE; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=21.30 E-value=2.6e+02 Score=17.35 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++||++|+++-.+.
T Consensus 129 ~~~lid~~g~i~~~~~ 144 (197)
T 4LLR_J 129 GLFIIDPKQNLRQITV 144 (197)
T ss_dssp EEEEECTTCBEEEEEE
T ss_pred EEEEECCCCcEEEEEE
No 115
>3ADY_A DotD; 3-layer(bab) sandwich, MTH1598-like, PROTON TRANSPORT; 2.0A {Legionella pneumophila}
Probab=21.07 E-value=2.5e+02 Score=19.26 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCEEEEECCCCCEEEEe
Q FD01848538_019 48 GKRATVVLNQDGKVVTVF 65 (72)
Q Consensus 48 g~~atVVlN~~g~vVT~~ 65 (72)
|..|.|+++++.++|...
T Consensus 125 g~~a~v~v~~~~k~I~l~ 142 (148)
T 3ADY_A 125 GKKASIHVYPNSQVVELR 142 (148)
T ss_dssp GGGEEEEEETTTTEEEEE
T ss_pred CCcEEEEEeCCCCEEEEE
No 116
>1LY1_A polynucleotide kinase; PNK, KINASE, PHOSPHATASE, POLYNUCLEOTIDE, T4, PHAGE, TRANSFERASE; HET: SO4; 2.0A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=20.97 E-value=3e+02 Score=16.03 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCCCCC
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSRGPE 72 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~~~~ 72 (72)
++|...|. .+.++.+.+...+..-..... ..-...+......++++.++.+-.+.....+.|
T Consensus 120 ~~r~~~r~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~ 181 (181)
T 1LY1_A 120 VKRNSKRG-TKAVPIDVLRSMYKSMREYLG-LPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDL 181 (181)
T ss_dssp HHHHTTCG-GGCCCHHHHHHHHHHHHHHHT-CCCC-----------------------------
T ss_pred HHHHHhcC-CCCCCHHHHHHHHHHHHHHhC-CCccCCCCCCCCeEEEECCCceecccCCCCCCC
No 117
>1PSQ_A probable thiol peroxidase; STRUCTURAL GENOMICS, THIOL, PEROXIDASE, NYSGXRC, T817, PSI, Protein Structure Initiative, New York SGX Research Center for; HET: MSE; 2.3A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=20.78 E-value=3.2e+02 Score=16.26 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEEEECCCCCEEEEeecCCCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~~~ 71 (72)
..++++++|+++-.+......
T Consensus 128 ~~~lid~~g~i~~~~~~~~~~ 148 (163)
T 1PSQ_A 128 AVFVLDTDNTIRYVEYVDNIN 148 (163)
T ss_dssp EEEEECTTCBEEEEEECSBTT
T ss_pred EEEEECCCCeEEEEEEcCCCC
No 118
>PF20003.3 ; fvmX5 ; FtsH ternary system domain X5
Probab=20.77 E-value=5.3e+02 Score=18.81 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHH-HHHHhCCeEEeecCCCc-EEEECCCEEEEECCCCCEEEE
Q FD01848538_019 24 KDM-LDAVQNPKKIIENANGT-IKYQGKRATVVLNQDGKVVTV 64 (72)
Q Consensus 24 ~~I-~dav~nP~~v~~~~~~s-~~y~g~~atVVlN~~g~vVT~ 64 (72)
.++ ..+|..+--... +++. ++..-...+|.+||++..+++
T Consensus 39 ~~LL~~~L~~~Gw~~~-~dg~~~r~~~~g~~v~~d~~t~~v~i 80 (188)
T A0A2S9XDD7_9DE 39 AALLERELEGAGFEQR-EDGQWVRADEDGVEVRVDPQASTVTV 80 (188)
T ss_pred HHHHHHHHhhCCcEEc-CCCcEEEEcCCCEEEEEECCCCEEEE
No 119
>2L5O_A Putative thioredoxin; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; NMR {Neisseria meningitidis serogroup B} SCOP: c.47.1.0, l.1.1.1
Probab=20.74 E-value=3e+02 Score=16.01 Aligned_cols=18 Identities=11% Similarity=0.486 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEeecC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~ 68 (72)
..++++++|+++-.+...
T Consensus 109 ~~~~id~~g~i~~~~~~~ 126 (153)
T 2L5O_A 109 TSVLIGKKGEILKTYVGE 126 (153)
T ss_dssp EEEEECSSSCCCEEEESS
T ss_pred EEEEECCCCCEEEEecCC
No 120
>8AO0_A Photoactive yellow protein; fluorogen-activating protein, FAST, nanoFAST, spatial structure, dynamics, ligand sepcificity, fluorogen, binding constatnt, FLUORESCENT PROTEIN; HET: GGL, O1F; NMR {synthetic construct}
Probab=20.64 E-value=3e+02 Score=16.13 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCEEEEECCCCCEEEEeec
Q FD01848538_019 49 KRATVVLNQDGKVVTVFGK 67 (72)
Q Consensus 49 ~~atVVlN~~g~vVT~~~~ 67 (72)
..+.++++++|+++.+...
T Consensus 1 ~~~i~i~d~~g~i~~~N~~ 19 (112)
T 8AO0_A 1 MFGAIQLDGDGNILQYNAA 19 (112)
T ss_dssp CCEEEEECTTSBEEEECHH
T ss_pred CceEEEECCCCcEEEEeCC
No 121
>PF00578.25 ; AhpC-TSA ; AhpC/TSA family
Probab=20.52 E-value=1.9e+02 Score=16.25 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEEEECCCCCEE
Q FD01848538_019 51 ATVVLNQDGKVV 62 (72)
Q Consensus 51 atVVlN~~g~vV 62 (72)
..++++++|+++
T Consensus 114 ~~~lid~~g~i~ 125 (127)
T Q8EW09_MALP2/1 114 SIFIIDEFNFVK 125 (127)
T ss_pred eEEEECCCCcEE
No 122
>1RFZ_D Hypothetical protein APC35681; Structural Genomics, Hypothetical Protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: SO4, MSE; 2.8A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=20.52 E-value=1.8e+02 Score=20.43 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHhcCCCCCCCCHHHHHHHH
Q FD01848538_019 9 LNQAIGRNGGKGVNIKDMLDAV 30 (72)
Q Consensus 9 l~r~ig~~~~rGVs~~~I~dav 30 (72)
++|.. +|||+.++|.+++
T Consensus 17 ~~~L~----erGi~~e~i~~~~ 34 (168)
T 1RFZ_D 17 RRWLE----ERGVTVEKIAELV 34 (168)
T ss_dssp HHHHH----HHTCCHHHHHHHH
T ss_pred HHHHH----HCCCCHHHHHHHH
No 123
>4KCE_A Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis} SCOP: c.47.1.10
Probab=20.34 E-value=2.5e+02 Score=18.15 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..++||++|+|+..+
T Consensus 146 ~~~lid~~g~i~~~~ 160 (213)
T 4KCE_A 146 GLFVIDKKGTLRHST 160 (213)
T ss_dssp EEEEECTTSBEEEEE
T ss_pred EEEEECCCCeEEEEE
No 124
>4KCE_B Peroxidoxin; Thioredoxin-like, oxidoreductase; 2.79A {Leishmania braziliensis}
Probab=20.34 E-value=2.5e+02 Score=18.15 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEEEECCCCCEEEEe
Q FD01848538_019 51 ATVVLNQDGKVVTVF 65 (72)
Q Consensus 51 atVVlN~~g~vVT~~ 65 (72)
..++||++|+|+..+
T Consensus 146 ~~~lid~~g~i~~~~ 160 (213)
T 4KCE_B 146 GLFVIDKKGTLRHST 160 (213)
T ss_dssp EEEEECTTCBEEEEE
T ss_pred EEEEECCCCeEEEEE
No 125
>4WBJ_A Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=20.28 E-value=3.1e+02 Score=15.87 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred CCcEEEECCCEEEEECCCCCEEEEeecC
Q FD01848538_019 41 NGTIKYQGKRATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 41 ~~s~~y~g~~atVVlN~~g~vVT~~~~~ 68 (72)
...+.+..--..++++++|+++-.+...
T Consensus 123 ~~~~~~~~~p~~~lid~~g~i~~~~~~~ 150 (164)
T 4WBJ_A 123 DGDYTMDHTALIYLMDRDGRFVSPFNLK 150 (164)
T ss_dssp TTCEEEEECCCCEEECTTSCEEEECCCS
T ss_pred CCCeEeeeceEEEEECCCCcEEEeecCC
No 126
>4WBJ_B Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=20.28 E-value=3.1e+02 Score=15.87 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred CCcEEEECCCEEEEECCCCCEEEEeecC
Q FD01848538_019 41 NGTIKYQGKRATVVLNQDGKVVTVFGKS 68 (72)
Q Consensus 41 ~~s~~y~g~~atVVlN~~g~vVT~~~~~ 68 (72)
...+.+..--..++++++|+++-.+...
T Consensus 123 ~~~~~~~~~p~~~lid~~g~i~~~~~~~ 150 (164)
T 4WBJ_B 123 DGDYTMDHTALIYLMDRDGRFVSPFNLK 150 (164)
T ss_dssp TTCEEEEECCCCEEECTTSCEEEECCCS
T ss_pred CCCeEeeeceEEEEECCCCcEEEeecCC
No 127
>3HDC_A Thioredoxin family protein; thioredoxin, Geobacter metallireducens, GS-15, ATCC53774, DSM 7210, 11211i, Structural Genomics, PSI-2, Protein Structure Initiative, New York; HET: MSE; 1.771A {Geobacter metallireducens GS-15} SCOP: c.47.1.0, l.1.1.1
Probab=20.25 E-value=2.9e+02 Score=16.50 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEECCCCCEEEEeecCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~ 69 (72)
..++++++|+++..+....
T Consensus 118 ~~~~i~~~g~v~~~~~g~~ 136 (158)
T 3HDC_A 118 DTFIVDRKGIIRQRVTGGI 136 (158)
T ss_dssp EEEEECTTSBEEEEEESCC
T ss_pred cEEEECCCCeEEEEeeCCC
No 128
>4GQC_D Thiol peroxidase; CXXXXC Motif, fully folded, locally unfolded, peroxide, DTT, Structural Genomics, RIKEN, peroxiredoxin, reduces peroxides, disulfide, OXIDOREDUCTASE; HET: SO4, DTD, GOL; 2.0A {Aeropyrum pernix} SCOP: l.1.1.1, c.47.1.10
Probab=20.23 E-value=2.8e+02 Score=16.37 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++++++|+++-.+.
T Consensus 123 ~~~~id~~g~v~~~~~ 138 (164)
T 4GQC_D 123 AVFIVKPDGTVAYKWV 138 (164)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCeEEEEEe
No 129
>3KCM_D Thioredoxin family protein; SGX, thioredoxin protein, PSI, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural; HET: SO4, MSE; 2.45A {Geobacter metallireducens GS-15} SCOP: c.47.1.0
Probab=20.13 E-value=3.1e+02 Score=16.21 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..++++++|+++..+.
T Consensus 109 ~~~lid~~g~i~~~~~ 124 (154)
T 3KCM_D 109 ETFVIDRHGVILKKVV 124 (154)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCcEEEEEe
No 130
>PF04461.17 ; DUF520 ; Protein of unknown function (DUF520)
Probab=20.11 E-value=1.1e+02 Score=22.09 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred CCHHHHHHHHhCCeEEeecCCCcEEEECCCEEEEECCCCCEEEEeecCCCC
Q FD01848538_019 21 VNIKDMLDAVQNPKKIIENANGTIKYQGKRATVVLNQDGKVVTVFGKSRGP 71 (72)
Q Consensus 21 Vs~~~I~dav~nP~~v~~~~~~s~~y~g~~atVVlN~~g~vVT~~~~~~~~ 71 (72)
|..+++.+||.+-.+-.. .+|-|.|..+.+-++...+.|+..+.+.+.
T Consensus 9 vd~qEv~NAv~qa~kEi~---~RyDFKgt~~~Ie~~~k~~~i~l~a~~e~k 56 (161)
T G8TS90_SULAD/5 9 PDWAEVLNAIDQVRRETA---NRYDFRGHSITVDYDDKAHEIHLDAPSGMI 56 (161)
T ss_pred CCHHHHHHHHHHHHHHHh---hccccCCCceEEecCcccceeeeecCChhh
No 131
>1Q98_A Thiol Peroxidase; structural genomics, tpx, peroxidase, NYSGXRC, T1429, PSI, Protein Structure Initiative, New York SGX Research Center for; 1.9A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=20.10 E-value=3e+02 Score=16.48 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred EEEEECCCCCEEEEee
Q FD01848538_019 51 ATVVLNQDGKVVTVFG 66 (72)
Q Consensus 51 atVVlN~~g~vVT~~~ 66 (72)
..+++|++|+++-.+.
T Consensus 132 ~~~lid~~g~v~~~~~ 147 (165)
T 1Q98_A 132 AVIVLDEQNNVLHSQL 147 (165)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCcEEEEEe
No 132
>4XRA_E Alkyl hydroperoxide reductase subunit C; peroxiredoxin, FF, PrxI, conformation, OXIDOREDUCTASE; HET: CL; 1.75A {Salmonella enterica subsp. enterica serovar Typhimurium} SCOP: c.47.1.10
Probab=20.01 E-value=3.5e+02 Score=16.35 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEECCCCCEEEEeecCC
Q FD01848538_019 51 ATVVLNQDGKVVTVFGKSR 69 (72)
Q Consensus 51 atVVlN~~g~vVT~~~~~~ 69 (72)
..+++|++|+++-.+....
T Consensus 120 ~~~lid~~g~i~~~~~~~~ 138 (186)
T 4XRA_E 120 ATFVVDPQGIIQAIEVTAE 138 (186)
T ss_dssp EEEEECTTSBEEEEEEECT
T ss_pred EEEEECCCCcEEEEEEcCC