Query FD01849511_03367 RHS repeat family protein
Match_columns 104
No_of_seqs 101 out of 109
Neff 4.53917
Searched_HMMs 86581
Date Tue Feb 27 20:51:49 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/5655761.hhr -oa3m ../results/5655761.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF19023.4 ; DUF5749 ; Family o 62.5 10 0.00012 26.8 1.6 29 8-36 36-64 (78)
2 2KK4_A Uncharacterized protein 57.0 11 0.00013 27.6 1.2 28 8-36 42-70 (95)
3 2ZUV_A Lacto-N-biose phosphory 28.6 70 0.00081 28.8 1.8 49 13-62 2-54 (759)
4 PF20606.2 ; DUF6799 ; Domain o 23.8 1.5E+02 0.0017 19.0 2.2 19 39-58 30-48 (62)
No 1
>PF19023.4 ; DUF5749 ; Family of unknown function (DUF5749)
Probab=62.48 E-value=10 Score=26.84 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=0.0 Template_Neff=4.100
Q ss_pred HHHHhhcCCCCCCCCcccHHHHHHHHHhh
Q FD01849511_033 8 IRNQTAAGGNRGITGVVSQNDAFRLGEAF 36 (104)
Q Consensus 8 L~~a~~~~gNfgi~G~~T~~eA~~lG~~W 36 (104)
|.+........-+.|-...++|.+||+.|
T Consensus 36 l~~Ve~~~~~~iv~g~fd~~~A~~lG~~W 64 (78)
T D3RZQ0_FERPA/4 36 LEAIEKTEEDKIYVSDFDEEEAKKFGELW 64 (78)
T ss_pred HHHeeecCCceEEecCCCHHHHHHHHHHH
No 2
>2KK4_A Uncharacterized protein AF_2094; protein of unknown function, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Unknown; NMR {Archaeoglobus fulgidus}
Probab=57.00 E-value=11 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHhhc-CCCCCCCCcccHHHHHHHHHhh
Q FD01849511_033 8 IRNQTAA-GGNRGITGVVSQNDAFRLGEAF 36 (104)
Q Consensus 8 L~~a~~~-~gNfgi~G~~T~~eA~~lG~~W 36 (104)
|.+.... ..+.-| |-...++|.+||+.|
T Consensus 42 l~~Ve~~~~e~i~V-g~fD~~kA~~lGe~W 70 (95)
T 2KK4_A 42 KKSIKSVEDGRIVI-GEFDEEEARELGRKW 70 (95)
T ss_dssp TTTEEEEETTEEEE-CCCCHHHHHHHHHHH
T ss_pred HHHEEEecCCeEEE-ccCCHHHHHHHHHHH
No 3
>2ZUV_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, Glycosyltransferase, Transferase; HET: NDG, EDO, NO3; 1.85A {Bifidobacterium longum}
Probab=28.65 E-value=70 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred hcCCCCCCCC-cccHHHHHHHHHhhcCCCcEEccCCCeE---EcCCCCcccCCC
Q FD01849511_033 13 AAGGNRGITG-VVSQNDAFRLGEAFVGPNYRVMSSGKGL---VSEDGLRTFRFP 62 (104)
Q Consensus 13 ~~~gNfgi~G-~~T~~eA~~lG~~WVG~G~r~~s~G~~l---iSaDGlR~yR~P 62 (104)
..+|-|+|++ ..-.+++.+|.+.| |..+...|||..| +..=|...||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 54 (759)
T 2ZUV_A 2 TSTGRFTLPSEENFAEKTKELAELW-GADAIRNSDGTHLDEAVLALGKKIYNAY 54 (759)
T ss_dssp -CCCSEEEECCTTCHHHHHHHHHHH-TCSEEECCC------CHHHHTCEEEEEE
T ss_pred CCccceecccccChHHHHHHHHHHH-CCCceeCCCCCccCHHHHHccCCEEEEE
No 4
>PF20606.2 ; DUF6799 ; Domain of unknown function (DUF6799)
Probab=23.77 E-value=1.5e+02 Score=19.03 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCcEEccCCCeEEcCCCCcc
Q FD01849511_033 39 PNYRVMSSGKGLVSEDGLRT 58 (104)
Q Consensus 39 ~G~r~~s~G~~liSaDGlR~ 58 (104)
+|.++..+| .++.+||.+.
T Consensus 30 nGt~v~~~G-~v~~~dG~~~ 48 (62)
T B9XKI4_PEDPL/1 30 DGTKVMKDG-TVMTKHGKSK 48 (62)
T ss_pred CCCEEcCCc-EEEeCCCcEE