Query FD01872749_01031 type IV secretion protein Rhs
Match_columns 107
No_of_seqs 47 out of 49
Neff 5.19445
Searched_HMMs 86581
Date Tue Feb 27 20:48:20 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4061699.hhr -oa3m ../results/4061699.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6SDK_A Stage 0 sporulation pro 97.8 0.00031 3.6E-09 49.4 8.1 52 27-82 26-77 (199)
2 2HWJ_D Hypothetical protein At 97.8 0.0002 2.3E-09 55.2 7.5 91 3-101 11-108 (205)
3 7BNR_B ParB family protein; DN 97.7 0.00073 8.5E-09 48.3 8.3 54 28-85 27-80 (212)
4 PF20188.2 ; DUF6551 ; Family o 97.6 0.00055 6.4E-09 51.4 6.9 67 13-92 7-79 (242)
5 1XW3_A SULFIREDOXIN; retroredu 97.6 0.0013 1.5E-08 42.6 7.5 81 1-92 14-102 (110)
6 6KY4_A Sulfiredoxin, chloropla 97.5 0.0022 2.6E-08 42.2 8.4 61 29-93 42-104 (112)
7 1VZ0_A Chromosome-partitioning 97.5 0.001 1.2E-08 48.8 7.0 90 1-99 23-112 (230)
8 4UMK_B PROBABLE CHROMOSOME-PAR 97.4 0.0025 2.9E-08 48.0 8.9 94 1-102 33-129 (240)
9 PF02195.22 ; ParBc ; ParB/Sulf 97.4 0.0025 2.9E-08 38.5 7.2 87 4-99 1-88 (89)
10 7NFU_B Nucleoid occlusion prot 97.3 0.0031 3.6E-08 47.3 7.9 97 1-106 28-125 (252)
11 7BM8_A Chromosome-partitioning 97.1 0.0061 7.1E-08 46.4 7.7 94 1-102 34-133 (257)
12 5K5D_B ParB domain protein nuc 97.1 0.0054 6.2E-08 48.9 7.5 86 3-99 13-101 (300)
13 PF08857.15 ; ParBc_2 ; Putativ 96.8 0.0036 4.1E-08 45.9 4.3 54 47-100 37-93 (153)
14 6RYK_A ParB-like nuclease doma 96.7 0.016 1.8E-07 43.6 6.8 69 27-99 54-123 (229)
15 1VK1_A Conserved hypothetical 94.7 0.24 2.7E-06 37.7 6.3 50 29-82 37-89 (242)
16 5UJE_A SbnI protein; staphylof 92.9 0.92 1.1E-05 34.7 6.5 50 29-82 29-80 (242)
17 6NR6_A Bifunctional transcript 92.7 1.2 1.3E-05 34.6 6.9 69 1-82 8-78 (254)
18 6CKA_A Paratox; prophage, natu 78.9 6 6.9E-05 27.1 3.3 29 28-59 3-31 (68)
19 PF14072.10 ; DndB ; DNA-sulfur 55.5 1.7E+02 0.002 23.8 8.3 81 13-102 41-154 (338)
20 PF19930.3 ; DUF6393 ; Family o 54.6 33 0.00038 25.0 3.1 63 1-66 3-72 (96)
21 PF19702.3 ; DUF6200 ; Family o 50.4 31 0.00035 24.2 2.4 38 18-55 31-73 (79)
22 3NEK_B nitrogen repressor-like 42.9 50 0.00058 27.4 2.9 82 3-92 133-232 (238)
23 1NXU_A Hypothetical oxidoreduc 41.0 2.2E+02 0.0025 23.9 6.3 71 29-101 49-132 (333)
24 1R71_D Transcriptional repress 40.8 66 0.00076 22.8 3.0 37 66-102 1-37 (178)
25 PF04060.17 ; FeS ; Putative Fe 32.8 1.2E+02 0.0014 15.3 2.8 21 28-48 13-33 (33)
26 4H8A_A Ureidoglycolate dehydro 32.3 4E+02 0.0046 22.5 6.6 71 29-101 51-134 (339)
27 4O7K_A Protein osa; Plasmid Fe 30.8 3.3E+02 0.0039 21.6 5.6 65 30-94 104-172 (190)
28 1V9N_A Malate dehydrogenase; D 30.2 3.6E+02 0.0041 22.7 6.0 71 29-101 60-143 (360)
29 PF18315.5 ; VCH_CASS14 ; Integ 29.9 96 0.0011 22.5 2.3 37 29-65 19-60 (97)
30 5VNY_A Lethal (2) giant discs 28.3 1.4E+02 0.0016 18.8 2.6 22 27-48 39-61 (66)
31 7MJ2_F Pyridinium-3,5-biscarbo 24.2 87 0.001 25.2 1.4 42 27-68 2-45 (256)
32 2X06_G L-SULFOLACTATE DEHYDROG 24.2 4E+02 0.0047 22.2 5.2 71 29-101 49-132 (344)
33 1Z2I_A malate dehydrogenase; M 23.5 2.1E+02 0.0025 24.0 3.6 43 29-73 58-102 (358)
34 PF01995.20 ; NRD1_2 ; NrpR reg 22.9 1.7E+02 0.002 24.1 2.8 86 3-92 112-218 (220)
35 PF02615.18 ; Ldh_2 ; Malate/L- 22.9 2.5E+02 0.0029 23.6 3.9 43 29-73 47-91 (337)
36 PF15517.10 ; TBPIP_N ; TBP-int 22.4 97 0.0011 22.9 1.2 44 50-94 14-57 (100)
37 8GLV_6S FAP339; cilia, microtu 22.2 1.9E+02 0.0022 21.0 2.7 26 30-56 34-59 (87)
38 PF21528.1 ; CC2D1A-B_DM14 ; Co 22.2 2.3E+02 0.0026 16.2 2.6 22 27-48 32-54 (56)
39 3I0P_A Malate dehydrogenase; a 21.8 2.8E+02 0.0032 23.7 4.0 43 29-73 55-100 (365)
40 7ZSS_P de novo designed binder 21.6 2.1E+02 0.0024 19.0 2.6 22 27-48 44-66 (79)
41 3IMO_A Integron cassette prote 21.5 1.6E+02 0.0019 22.7 2.3 37 29-65 49-90 (133)
42 PF18006.5 ; SepRS_C ; O-phosph 21.4 2.9E+02 0.0033 15.9 3.0 27 50-76 2-28 (31)
43 PF07879.15 ; PHB_acc_N ; PHB/P 20.0 3.7E+02 0.0043 17.8 3.5 29 20-55 11-40 (61)
No 1
>6SDK_A Stage 0 sporulation protein J; ParB, Chromosome segregation, Chromosome organization, DNA BINDING PROTEIN; HET: CDP, MSE; 1.81A {Bacillus subtilis (strain 168)} SCOP: d.268.1.0, a.4.14.0
Probab=97.82 E-value=0.00031 Score=49.44 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=45.4 Template_Neff=11.400
Q ss_pred ccHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeEEE
Q FD01872749_010 27 RSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL 82 (107)
Q Consensus 27 ~~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~~~ 82 (107)
..+..+.+.++.... +.||.|...+|.++.+||++|+.|+++.|.+.|++.+
T Consensus 26 ~~~~~l~~si~~~g~----~~pi~v~~~~~~~~vi~G~~R~~a~~~~~~~~i~~~~ 77 (199)
T 6SDK_A 26 EALAELKESVLQHGI----LQPLIVRKSLKGYDIVAGERRFRAAKLAGLDTVPAIV 77 (199)
T ss_dssp HHHHHHHHHHHHHCC----CSCEEEEECSSSEEEEECHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHcCC----CCCEEEEECCCcEEEEechhHHHHHHHcCCCeecEEE
Confidence 478888888887443 4699999988889999999999999999999999988
No 2
>2HWJ_D Hypothetical protein Atu1540; Agrobacterium tumefaciens, Hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; HET: MSE; 2.61A {Agrobacterium tumefaciens str. C58} SCOP: d.268.1.3
Probab=97.80 E-value=0.0002 Score=55.21 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=61.9 Template_Neff=7.600
Q ss_pred ccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCH----hHCCCeEEEE-ECCeEEEecCChHHHHHHHCCCCc
Q FD01872749_010 3 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKA----TDFPAIKVVN-VKGQLVVRDGNSRLAIAVKGKAQQ 77 (107)
Q Consensus 3 ~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~----~dipPIrVv~-~~G~~~sLD~NRRL~a~~~Agv~~ 77 (107)
.|+..+|+=||..|+-. .+....+.+...+... ....|+.|.. .++.++++|||||+.|+..+|...
T Consensus 11 ~v~i~~L~PTQ~~vg~~--------~v~~~~~~~~~~~~~~~~~~l~~~~ipvvigp~g~~yliDGHHr~~a~~~~G~~~ 82 (205)
T 2HWJ_D 11 RIAIDKLRPTQIAVGFR--------EVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEH 82 (205)
T ss_dssp EEETTTSBCSBSEECHH--------HHHHHHHHHTTCC------CTTCCEEEEEECSTTCEEECSCHHHHHHHHTTTCCE
T ss_pred EeeHHHcCCCchhcCHH--------HHHHHHHHHHHhchhhccccccCceeeEEECCCCCEEEeCChHHHHHHHHhCCCE
Confidence 46677888899888754 6777777766431000 0024555554 356699999999999999999999
Q ss_pred CeEEEcCc--HHHHHHHHHhhhcCCC
Q FD01872749_010 78 IKVILETN--VDQLRDFTKRLRNNGL 101 (107)
Q Consensus 78 i~~~~~t~--~~~~~~l~~kl~~n~~ 101 (107)
|+|.+..+ ..-..+||+.|.+++.
T Consensus 83 v~v~v~~d~s~l~~~~Fw~~m~~~~~ 108 (205)
T 2HWJ_D 83 VLTSEVAKFSHLGKDEFWSVMDHRNL 108 (205)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred EEEEEechhccCCHHHHHHHHHHCCC
Confidence 99988222 1112788988877654
No 3
>7BNR_B ParB family protein; DNA-binding protein, CTP, Myxococcus, DNA-segregation, DNA BINDING PROTEIN; HET: UFQ, GOL; 1.7A {Myxococcus xanthus (strain DK 1622)}
Probab=97.68 E-value=0.00073 Score=48.32 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=48.7 Template_Neff=11.200
Q ss_pred cHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeEEEcCc
Q FD01872749_010 28 SVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVILETN 85 (107)
Q Consensus 28 ~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~~~~t~ 85 (107)
.+..+.+++...|. ..|+.+...++.|+|+|||||+.+++.++...++|.+...
T Consensus 27 ~~~~l~~si~~~g~----~~pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~~i~~~ 80 (212)
T 7BNR_B 27 KLKELSESIKAQGV----LQPILVRKDGDGYRIIAGERRWRASQAAGLKEVPAIVRDV 80 (212)
T ss_dssp HHHHHHHHHHHHCC----SSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECCC
T ss_pred HHHHHHHHHHHhCC----ccCEEEEEcCCceEEeecchHHHHHHHcCCCccCEEEECC
Confidence 78899999998888 8899998877789999999999999999999999998654
No 4
>PF20188.2 ; DUF6551 ; Family of unknown function (DUF6551)
Probab=97.58 E-value=0.00055 Score=51.43 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCC---CcCeEEE---cCcH
Q FD01872749_010 13 QTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKA---QQIKVIL---ETNV 86 (107)
Q Consensus 13 Q~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv---~~i~~~~---~t~~ 86 (107)
|+.+++. .|..+++.+..+ -++||.|..++|.+|++||.+|+.|++.+|- ..|++.+ .+..
T Consensus 7 qR~~~~~--------~v~~l~~~~~~~-----~~~pi~v~~~~g~~~viDGqhR~~a~~~~~~~~~~~v~~~i~~~~~~~ 73 (242)
T D4K186_9FIRM/3 7 QRGIQRK--------RVELIARDFNEY-----TANEPKISFRNGRYYVTDGQHTIEARILRNGGKDLPILCKVYTGLTMQ 73 (242)
T ss_pred ccccCHH--------HHHHHHHhccHh-----hCCCCEEEEeCCeEEEeCChhHHHHHHHhcCCCCccEEEEEEcCCCHH
Q ss_pred HHHHHH
Q FD01872749_010 87 DQLRDF 92 (107)
Q Consensus 87 ~~~~~l 92 (107)
+....+
T Consensus 74 ~~~~~f 79 (242)
T D4K186_9FIRM/3 74 QEALFF 79 (242)
T ss_pred HHHHHH
No 5
>1XW3_A SULFIREDOXIN; retroreduction, sulfinic acid, peroxiredoxin, ATP, OXIDOREDUCTASE; 1.65A {Homo sapiens} SCOP: l.1.1.1, d.268.1.4
Probab=97.57 E-value=0.0013 Score=42.61 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHc-CCCCHhHCCCeEEEEECCe-----EEEecCChHHHHHHHCC
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRK-GNIKATDFPAIKVVNVKGQ-----LVVRDGNSRLAIAVKGK 74 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~-G~~~~~dipPIrVv~~~G~-----~~sLD~NRRL~a~~~Ag 74 (107)
...+.+.+|.+.+ +...... .++.+.+.++. |... |||.|...++. ++.+||++|+.|++..|
T Consensus 14 ~~~i~~~~i~~~~----~~~~~~~---~~~~l~~si~~~g~~~----~pi~v~~~~~~~~~~~~~ii~G~~R~~a~~~~~ 82 (110)
T 1XW3_A 14 VHNVPLSVLIRPL----PSVLDPA---KVQSLVDTIREDPDSV----PPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQ 82 (110)
T ss_dssp EEEEEGGGEECCS----CCCCCHH---HHHHHHHHHHHCGGGS----CCEEEEEEECTTSCEEEECCSCHHHHHHHHHTT
T ss_pred eEEEeHHHccCCC----CCCCCHH---HHHHHHHHHHhCCCCC----CCeEEEEEeCCCCCceEEEEcchHHHHHHHHhc
Q ss_pred CCcCeEEE--cCcHHHHHHH
Q FD01872749_010 75 AQQIKVIL--ETNVDQLRDF 92 (107)
Q Consensus 75 v~~i~~~~--~t~~~~~~~l 92 (107)
...|++.+ .+..+....+
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~ 102 (110)
T 1XW3_A 83 RETIPAKLVQSTLSDLRVYL 102 (110)
T ss_dssp CSEEEEEEEEECHHHHHHHH
T ss_pred cCCCCeEEEeCCHHHHHHHh
No 6
>6KY4_A Sulfiredoxin, chloroplastic/mitochondrial; sulfiredoxin, cysteine, sulfinic acid, peroxiredoxin repair protein, arabidopsis thaliana, antioxidant, oxidoreductase; HET: PO4, ADP; 3.2A {Arabidopsis thaliana}
Probab=97.52 E-value=0.0022 Score=42.21 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeEEE--cCcHHHHHHHH
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL--ETNVDQLRDFT 93 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~~~--~t~~~~~~~l~ 93 (107)
++.+++.++..... +||.|...+|.++.+||++|+.+++.+|...|++.+ .+..+.....+
T Consensus 42 ~~~l~~s~~~~g~~----~pi~v~~~~~~~~ii~G~~R~~aa~~~~~~~i~~~v~~~~~~~~~~~~~ 104 (112)
T 6KY4_A 42 VKELMDSIRQIGLQ----VPIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTKETLRHHLR 104 (112)
T ss_dssp HHHHHHHHHHHCCC----SCEEEEEETTEEECCSCHHHHHHHHHTTCSEEEEEEEECCHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC----CCeEEEEECCEEEEEcCchHHHHHHHhCCCeeeEEEEeCCHHHHHHHhH
No 7
>1VZ0_A Chromosome-partitioning protein Spo0J; NUCLEAR PROTEIN, CHROMOSOME SEGREGATION, DNA-BINDING, HELIX-TURN-HELIX; HET: CO; 2.3A {Thermus thermophilus HB27} SCOP: a.4.14.1, d.268.1.1
Probab=97.49 E-value=0.001 Score=48.78 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeE
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKV 80 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~ 80 (107)
...+++++|...-......|+.. .++.+++.|+..... .||.|...+|.++.+||++|+.|++++|...|++
T Consensus 23 ~~~i~i~~i~~~~~~~r~~~~~~----~~~~l~~si~~~g~~----~pi~v~~~~~~~~i~dG~~R~~a~~~~~~~~i~~ 94 (230)
T 1VZ0_A 23 VVRLPLASIRPNPRQPRKRFAEE----SLKELADSIREKGLL----QPLLVRPQGDGYELVAGERRYRAALMAGLQEVPA 94 (230)
T ss_dssp CEEEEGGGEECCCCCHHHHHHHH----HHHHHHHHHHHHCCS----SCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEE
T ss_pred eeEccHHHCCCCCCCCcccCCHH----HHHHHHHHHHHhCCC----CCEEEEEcCCeEEEEeChHHHHHHHHcCCCeeCE
Q ss_pred EEcCcHHHHHHHHHhhhcC
Q FD01872749_010 81 ILETNVDQLRDFTKRLRNN 99 (107)
Q Consensus 81 ~~~t~~~~~~~l~~kl~~n 99 (107)
.+....+...... .+..|
T Consensus 95 ~v~~~~~~~~~~~-~~~~n 112 (230)
T 1VZ0_A 95 VVKDLTDREALEL-ALVEN 112 (230)
T ss_dssp EECCCCHHHHHHH-HHHHH
T ss_pred EEecCCHHHHHHH-HHHHH
No 8
>4UMK_B PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB; DNA BINDING PROTEIN-DNA COMPLEX; HET: SO4; 3.096A {HELICOBACTER PYLORI}
Probab=97.45 E-value=0.0025 Score=47.97 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeE
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKV 80 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~ 80 (107)
...+.+.+|..........++.. .++.+++.+...... .||.|...+|.++++||++|+.|+++.|.+.|++
T Consensus 33 ~~~i~l~~i~~~~~~~r~~~~~~----~~~~l~~si~~~G~~----~Pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~ 104 (240)
T 4UMK_B 33 VVELGIDEVMPNPYQPRKVFSED----SLEELAQSIKEHGLL----QPVLVVSENGRYHLIAGERRLRASKLAKMPTIKA 104 (240)
T ss_dssp ------------CCCSSCCCCCC----HHHHHSSTTTTTTCC----CCCCCEEEETTEEEESCGGGHHHHHTTSSSCCCC
T ss_pred eEEecHHHcCCCCCCcccCCCHH----HHHHHHHHHHHcCCC----cCEEEEeeCCEEEEEeChhHHHHHHHcCCCcceE
Q ss_pred EE--cCcHHHH-HHHHHhhhcCCCC
Q FD01872749_010 81 IL--ETNVDQL-RDFTKRLRNNGLP 102 (107)
Q Consensus 81 ~~--~t~~~~~-~~l~~kl~~n~~~ 102 (107)
.+ .+..+.. ..+.....+..+.
T Consensus 105 ~v~~~~~~~~~~~~l~~n~~r~~~~ 129 (240)
T 4UMK_B 105 IVVDIEQEKMREVALIENIQREDLN 129 (240)
T ss_dssp CCSEEEHHHHHHHHHHHHSCCCSCC
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCC
No 9
>PF02195.22 ; ParBc ; ParB/Sulfiredoxin domain
Probab=97.43 E-value=0.0025 Score=38.50 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEEC-CeEEEecCChHHHHHHHCCCCcCeEEE
Q FD01872749_010 4 VNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVK-GQLVVRDGNSRLAIAVKGKAQQIKVIL 82 (107)
Q Consensus 4 vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~-G~~~sLD~NRRL~a~~~Agv~~i~~~~ 82 (107)
++..+|...+......+... .++.+++.++..... .|+.+.... |.++.+||++|+.+++++|...|++.+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~----~pi~~~~~~~~~~~v~~G~~r~~~~~~~~~~~i~~~~ 72 (89)
T PARB_PSEPK/39- 1 LPVELVQRGKYQPRRDMDPE----ALEELAHSIRNHGVM----QPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAMV 72 (89)
T ss_pred CCHHHccCCCCCCcccCCHH----HHHHHHHHHHHcCCc----cCEEEEEcCCCCEEEeeChhHHHHHHHhCCCccCEEE
Q ss_pred cCcHHHHHHHHHhhhcC
Q FD01872749_010 83 ETNVDQLRDFTKRLRNN 99 (107)
Q Consensus 83 ~t~~~~~~~l~~kl~~n 99 (107)
....+...... .+..|
T Consensus 73 ~~~~~~~~~~~-~~~~n 88 (89)
T PARB_PSEPK/39- 73 REVPDEAAIAM-ALIEN 88 (89)
T ss_pred ecCCHHHHHHH-HHHhc
No 10
>7NFU_B Nucleoid occlusion protein; CTP switch, chromosome segregation, protein-DNA recognition, peripheral membrane protein, DNA BINDING PROTEIN; HET: SO4; 2.5A {Geobacillus thermoleovorans CCB_US3_UF5}
Probab=97.32 E-value=0.0031 Score=47.25 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEE-CCeEEEecCChHHHHHHHCCCCcCe
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQIK 79 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~-~G~~~sLD~NRRL~a~~~Agv~~i~ 79 (107)
...+++.+|..........+... .++.+.+.|+..... .||.|... +|.++++||++|+.|++++|.+.++
T Consensus 28 ~~~i~~~~i~~~~~~~r~~~~~~----~~~~l~~si~~~g~~----~Pi~v~~~~~~~y~vidG~~R~~a~~~~~~~~i~ 99 (252)
T 7NFU_B 28 VRHIPVKSIIPNRFQPRTMFDEE----KIDELALTIRTHGII----QPIVVRECGNGRFEIIAGERRWRAVQKLGWTEIP 99 (252)
T ss_dssp CEEEEGGGEECCTTSCCCCCCHH----HHHHHHHHHHHHCCS----SCEEEEEETTTEEEEEECHHHHHHHHHTTCSEEE
T ss_pred ceeCCHHHcCCCCCCCcccCCHH----HHHHHHHHHHHcCCC----CCEEEEEcCCCcEEEecChhHHHHHHHhCCCcCC
Q ss_pred EEEcCcHHHHHHHHHhhhcCCCCCCCC
Q FD01872749_010 80 VILETNVDQLRDFTKRLRNNGLPNTGT 106 (107)
Q Consensus 80 ~~~~t~~~~~~~l~~kl~~n~~~n~Gt 106 (107)
+.+....+...... .+..|.....-+
T Consensus 100 ~~v~~~~~~~~~~~-~~~~n~~~~~~~ 125 (252)
T 7NFU_B 100 AIIKNLNDKETASV-ALIENLQREELT 125 (252)
T ss_dssp EEECCCCHHHHHHH-HHHHHHHHTCCC
T ss_pred EEEECCCHHHHHHH-HHHHHccCCCCC
No 11
>7BM8_A Chromosome-partitioning protein ParB; chromosome segregation, CTP, molecular gates, protein-DNA recognition, DNA BINDING PROTEIN; HET: CTP; 2.73A {Caulobacter vibrioides (strain NA1000 / CB15N)} SCOP: d.268.1.0, a.4.14.0
Probab=97.11 E-value=0.0061 Score=46.40 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEEC---CeEEEecCChHHHHHHHCCCCc
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVK---GQLVVRDGNSRLAIAVKGKAQQ 77 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~---G~~~sLD~NRRL~a~~~Agv~~ 77 (107)
...++...|..........|+.. .++++++.|+..... +||.|...+ |.++.+||++|+.|+++.|+..
T Consensus 34 ~~~i~l~~i~~~~~~~r~~~~~~----~~~~L~~si~~~G~~----~Pi~v~~~~~~~~~y~vidG~~R~~a~~~l~~~~ 105 (257)
T 7BM8_A 34 SREAPIEILQRNPDQPRRTFREE----DLEDLSNSIREKGVL----QPILVRPSPDTAGEYQIVAGERRWRAAQRAGLKT 105 (257)
T ss_dssp CEEEEGGGEEECTTCSCCCCCHH----HHHHHHHHHHHHCCC----SCEEEEECSSSTTCEEEEECHHHHHHHHHTTCSE
T ss_pred cEEEeHHHccCCCCCCCccCCHH----HHHHHHHHHHHhCCC----CCeEEEECCCCCCcEEEeeChhHHHHHHHcCCCe
Q ss_pred CeEEE--cCcHHHH-HHHHHhhhcCCCC
Q FD01872749_010 78 IKVIL--ETNVDQL-RDFTKRLRNNGLP 102 (107)
Q Consensus 78 i~~~~--~t~~~~~-~~l~~kl~~n~~~ 102 (107)
|++.+ .+..+.. ..+.....+..+.
T Consensus 106 i~~~v~~~~~~~~~~~~~~~n~~~~~l~ 133 (257)
T 7BM8_A 106 VPIMVRELDDLAVLEIGIIENVQRADLN 133 (257)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCCCCC
T ss_pred ecEEEEeCCHHHHHHHHHHHHhcCCCCC
No 12
>5K5D_B ParB domain protein nuclease; ParB-N, pnob8, partition, HYDROLASE; HET: CIT, MSE; 2.45A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.0054 Score=48.91 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHHHHHHHCCCCcCeEEE
Q FD01872749_010 3 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL 82 (107)
Q Consensus 3 ~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~~~ 82 (107)
.|++.+|.... .....|.... .++++++.|+..... .||.| ++.+..+||.||+.|++++|+..|++.+
T Consensus 13 ~i~i~~i~~~~-~~~~~~~~~~---~~~~L~~sI~~~G~~----~Pi~v---~~~~~iidG~~R~~A~~~lg~~~i~~~v 81 (300)
T 5K5D_B 13 VVSIEKLKEDD-EFKTMVPSNN---SREDLEKSLREKSQI----FPLIA---DRNYVLIDGYTRLDIMKKLGFKEVKILK 81 (300)
T ss_dssp EEEGGGCEECH-HHHHSSCCCT---THHHHHHHHHHHCSC----SCEEE---CTTCEEEECHHHHHHHHHTTCCEEEEEE
T ss_pred EeCHHHCCCCh-hHhccCCChh---hHHHHHHHHHHhcCC----CCEEE---CCCCEEeCCHHHHHHHHHcCCCEeeEEE
Q ss_pred cCcHHH---HHHHHHhhhcC
Q FD01872749_010 83 ETNVDQ---LRDFTKRLRNN 99 (107)
Q Consensus 83 ~t~~~~---~~~l~~kl~~n 99 (107)
...... ...+.-.+..|
T Consensus 82 ~~~~~~~~~~~~~~~~l~eN 101 (300)
T 5K5D_B 82 YDFDSQQERDKAYELIWTFN 101 (300)
T ss_dssp ESSCTTTCHHHHHHHHHHTT
T ss_pred ECCCChhhHHHHHHHHHHHh
No 13
>PF08857.15 ; ParBc_2 ; Putative ParB-like nuclease
Probab=96.83 E-value=0.0036 Score=45.88 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCeEEEE-ECCeEEEecCChHHHHHHHCCCCcCeEEE-cCcHHHH-HHHHHhhhcCC
Q FD01872749_010 47 PAIKVVN-VKGQLVVRDGNSRLAIAVKGKAQQIKVIL-ETNVDQL-RDFTKRLRNNG 100 (107)
Q Consensus 47 pPIrVv~-~~G~~~sLD~NRRL~a~~~Agv~~i~~~~-~t~~~~~-~~l~~kl~~n~ 100 (107)
.||.||. .+|++|.+||+.|++|+.++|+..|++.+ ....+.. .+|+..+..++
T Consensus 37 ~~ipvv~~~~g~~~liDGHHr~~a~~~~g~~~v~v~v~~~~~~~~~~~f~~~~~~~~ 93 (153)
T S5Y864_PARAH/7 37 HLLPCVLGPKKRYHLIDNHHLALALHLEGVTAVLVNVVADLSGMEKDEFFTHLDNRN 93 (153)
T ss_pred CCcCEEECCCCcEEEECCHHHHHHHHHccCceeEEEEeccCCCCCHHHHHHHHHHCC
No 14
>6RYK_A ParB-like nuclease domain protein; ParABS, cytoskeleton, bactofilin, CTP, CELL CYCLE; HET: CTP; 1.7A {Myxococcus xanthus DK 1622}
Probab=96.69 E-value=0.016 Score=43.61 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred ccHHHHHHHHHcCCCCHhHCCCeEEEEE-CCeEEEecCChHHHHHHHCCCCcCeEEEcCcHHHHHHHHHhhhcC
Q FD01872749_010 27 RSVQSVINDVRKGNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQIKVILETNVDQLRDFTKRLRNN 99 (107)
Q Consensus 27 ~~I~d~i~~l~~G~~~~~dipPIrVv~~-~G~~~sLD~NRRL~a~~~Agv~~i~~~~~t~~~~~~~l~~kl~~n 99 (107)
..++++++.++..... .|+.|... +|.++.+||.+|+.|++..|...|++.+.........+...+..|
T Consensus 54 ~~~~~l~~si~~~g~~----~pi~v~~~~~~~y~lv~G~~R~~a~~~~~~~~i~~~v~~~~~~~~~~~~~~~~n 123 (229)
T 6RYK_A 54 GDVSGLATDIARLGQL----FPVDVRPAGEDRYQLVCGFRRVAALRFLKRDAVQARIHLRLSDEDALVMSLAEA 123 (229)
T ss_dssp CCCHHHHHHHHHHCCC----SCEEEEECSTTCEEEEECHHHHHHHHTTTCSEEEEEEESSCCHHHHHHHHTHHH
T ss_pred cchHHHHHHHHHhCCC----CCeEEEECCCCCEEEEeCcHHHHHHHHcCCCeeeEEEECCCCHHHHHHHHHHHH
No 15
>1VK1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, Pyrococcus furiosus, conserved hypothetical protein, structural genomics, PSI, Protein Structure Initiative, Southeast; HET: MLY; 1.2A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=94.73 E-value=0.24 Score=37.66 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHHc-CCCCHhHCCCeEEEEEC--CeEEEecCChHHHHHHHCCCCcCeEEE
Q FD01872749_010 29 VQSVINDVRK-GNIKATDFPAIKVVNVK--GQLVVRDGNSRLAIAVKGKAQQIKVIL 82 (107)
Q Consensus 29 I~d~i~~l~~-G~~~~~dipPIrVv~~~--G~~~sLD~NRRL~a~~~Agv~~i~~~~ 82 (107)
++++++.++. |... +||-|...+ +.++.+||++|+.|++..|...+++.+
T Consensus 37 ~~~l~~~i~~~G~~~----~Pi~v~~~~~~~~~~i~dG~hR~~a~~~~~~~~i~~~~ 89 (242)
T 1VK1_A 37 LEDFIESVTGSGIFW----KPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVI 89 (242)
T ss_dssp HHHHHHHHHHHCEEC----SCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHhcCCcc----CCEEEEeCCCCCeEEEcCChHHHHHHHHhCCCeecEEE
No 16
>5UJE_A SbnI protein; staphyloferrin B, heme, regulator, siderophore, GENE REGULATION; HET: GOL, MSE; 2.5A {Staphylococcus aureus}
Probab=92.92 E-value=0.92 Score=34.71 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHc-CCCCHhHCCCeEEEEEC-CeEEEecCChHHHHHHHCCCCcCeEEE
Q FD01872749_010 29 VQSVINDVRK-GNIKATDFPAIKVVNVK-GQLVVRDGNSRLAIAVKGKAQQIKVIL 82 (107)
Q Consensus 29 I~d~i~~l~~-G~~~~~dipPIrVv~~~-G~~~sLD~NRRL~a~~~Agv~~i~~~~ 82 (107)
++.+++.|+. |-.. .||-|...+ +.++.+||++|+.|++..|...|++.+
T Consensus 29 ~~~l~~~i~~~G~~~----~Pi~v~~~~~~~~~i~dG~~R~~a~~~~~~~~i~~~~ 80 (242)
T 5UJE_A 29 LEKTKSSIEADDFIR----HPILVTAMQHGRYMVIDGVHRYTSLKALGCKKVPVQE 80 (242)
T ss_dssp HHHHHHHHHHHTEES----SCEEEEECSTTCEEEEECHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCC----CCeEEEEccCCeEEEcCCHHHHHHHHHcCCCccCEEE
No 17
>6NR6_A Bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI; free serine kinase, siderophore, ParB/Srx family, staphyloferrin B, BIOSYNTHETIC PROTEIN; HET: ADP; 1.9A {Staphylococcus pseudintermedius}
Probab=92.68 E-value=1.2 Score=34.57 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CcccCHHHcccchhhhhhhcCCCCCcccHHHHHHHHHc-CCCCHhHCCCeEEEEE-CCeEEEecCChHHHHHHHCCCCcC
Q FD01872749_010 1 EILVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRK-GNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQI 78 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis~~F~~~~~~~~I~d~i~~l~~-G~~~~~dipPIrVv~~-~G~~~sLD~NRRL~a~~~Agv~~i 78 (107)
...+..++|...+. ..+. .++.+++.|+. |.+. .||-+... ++.++.+||+.|+.|+++.|...+
T Consensus 8 i~~i~~~~i~~he~------~~~~---~~~~l~~~i~~~g~~~----~Pii~~~~~~~~~~i~DGhhR~~a~~~~~~~~v 74 (254)
T 6NR6_A 8 LQLIPVDKIDLHEA------FEPS---RLEKTKESIAKEQHLR----HPVLVVKTLFGRYMVIDGVHRFMSLKALGCEVI 74 (254)
T ss_dssp EEEEEGGGEECCBC------CCHH---HHHHHHHHHHHHCEES----SCEEEEECGGGCEEEEECHHHHHHHHHTTCSEE
T ss_pred cEEeeHHHccCCCc------cCHH---HHHHHHHHHHHcCCcc----CCeEEEEeCCCeEEEccCchHHHHHHHcCCCEE
Q ss_pred eEEE
Q FD01872749_010 79 KVIL 82 (107)
Q Consensus 79 ~~~~ 82 (107)
.+.+
T Consensus 75 ~~~~ 78 (254)
T 6NR6_A 75 PVQV 78 (254)
T ss_dssp EEEE
T ss_pred cEEE
No 18
>6CKA_A Paratox; prophage, natural competence, Streptococcus, protein binding, VIRAL PROTEIN; HET: MSE; 1.559A {Streptococcus pyogenes serotype M3}
Probab=78.91 E-value=6 Score=27.09 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred cHHHHHHHHHcCCCCHhHCCCeEEEEECCeEE
Q FD01872749_010 28 SVQSVINDVRKGNIKATDFPAIKVVNVKGQLV 59 (107)
Q Consensus 28 ~I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~ 59 (107)
+.+++.+|+.+|.++-+.+ .||+++|+.|
T Consensus 3 ~~defkeAId~G~I~gdtV---~IVRknGkIf 31 (68)
T 6CKA_A 3 YIDEFKEAIDKGYILGDTV---AIVRKNGKIF 31 (68)
T ss_dssp CHHHHHHHHHTTSSCSSEE---EEEEETTEEE
T ss_pred cHHHHHHHHHcCCCCCCeE---EEEEeCCEEE
No 19
>PF14072.10 ; DndB ; DNA-sulfur modification-associated
Probab=55.52 E-value=1.7e+02 Score=23.81 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred hhhhhhhcCCCCCcccHHHHHHHHHcCCCCHhHCCCeEEEE------------------------ECCeEEEecCChHHH
Q FD01872749_010 13 QTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVN------------------------VKGQLVVRDGNSRLA 68 (107)
Q Consensus 13 Q~sis~~F~~~~~~~~I~d~i~~l~~G~~~~~dipPIrVv~------------------------~~G~~~sLD~NRRL~ 68 (107)
|+.++.. .+.++.+-|.++.-. --+|||-+.. .+...+++||.-|++
T Consensus 41 QR~~~~~--------rv~~I~~yl~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~iiDGQHR~~ 111 (338)
T Q16C17_ROSDO/8 41 QRVLSNV--------RVPQIASYLSENFEE-YTLSSLCASVDGDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRA 111 (338)
T ss_pred hhcCCcc--------cHHHHHHHHHhCCcc-cccCCeEEEEcCceEEecCCCCCCcCCcEEEEEcCCCEEEEcChhHHHH
Q ss_pred HHHHC-------CCCcCeEEE--cCcHHHHHHHHHhhhcCCCC
Q FD01872749_010 69 IAVKG-------KAQQIKVIL--ETNVDQLRDFTKRLRNNGLP 102 (107)
Q Consensus 69 a~~~A-------gv~~i~~~~--~t~~~~~~~l~~kl~~n~~~ 102 (107)
|+..| +-..|++.+ ..+.+..+++.-.+..+..+
T Consensus 112 a~~~~~~~~~~~~~~~i~v~i~~~~~~~~~~~~F~~iN~~~~~ 154 (338)
T Q16C17_ROSDO/8 112 AIEEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAVR 154 (338)
T ss_pred HHHHHHHhCccccCCeeEEEEEeCCCHHHHHHHHHHHHhcCCC
No 20
>PF19930.3 ; DUF6393 ; Family of unknown function (DUF6393)
Probab=54.62 E-value=33 Score=24.98 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred CcccCHHHcccchhhhh----hhcCCCCCcccHHHHHHHHHc--CCCCHhHCCCeEEEEECCeEEEecCC-hH
Q FD01872749_010 1 EILVNPKDVNFSQTTIN----SAFDTPDGKRSVQSVINDVRK--GNIKATDFPAIKVVNVKGQLVVRDGN-SR 66 (107)
Q Consensus 1 ~~~vdP~~i~FsQ~sis----~~F~~~~~~~~I~d~i~~l~~--G~~~~~dipPIrVv~~~G~~~sLD~N-RR 66 (107)
++.-.+.-++|.|-.|| ..|--|. +=+++.+++.+ ....++|-+-.-|+.++...+.||++ |.
T Consensus 3 EIyas~kpv~feq~DVS~IV~ky~P~Gt---~k~~V~~~f~~~~~~~i~ed~~~~lvvrd~kg~a~l~Pdars 72 (96)
T A0A1C7P3K5_9HY 3 EVYASRKPVRFEQIDVDEIVLKHFPKGT---GRTAVNEALKASVSSKITKNAADELVVRDDRGRAMLDPDARS 72 (96)
T ss_pred chhcCCCCCChhhcchHHHHHHhCCCCC---CHHHHHHHHhhcccceeeecCCCeEEEEcCCCcccccCCCCe
No 21
>PF19702.3 ; DUF6200 ; Family of unknown function (DUF6200)
Probab=50.43 E-value=31 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred hhcCCCCCc--ccHHHHHHHHH---cCCCCHhHCCCeEEEEEC
Q FD01872749_010 18 SAFDTPDGK--RSVQSVINDVR---KGNIKATDFPAIKVVNVK 55 (107)
Q Consensus 18 ~~F~~~~~~--~~I~d~i~~l~---~G~~~~~dipPIrVv~~~ 55 (107)
..+..|.|+ ..|++++++|+ +|.+...-+-||-||.++
T Consensus 31 k~LrkG~GkL~~~V~~~i~~lk~~l~G~i~~~~lqPVVvvvr~ 73 (79)
T A0A2P1PQV5_9GA 31 RQLKNGRGAAQDEVARVLESVRTDLAAEAEGKILVPVVIVYRR 73 (79)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHhhhhhcccccccEEEEEEe
No 22
>3NEK_B nitrogen repressor-like protein MJ0159; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; HET: MSE, GOL; 2.5A {Methanocaldococcus jannaschii}
Probab=42.86 E-value=50 Score=27.41 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred ccCHHHcccchhhhhhhcCCCCCc-------------ccHHHHHHHHH-cCCCCHhHC-CC---eEEEEECCeEEEecCC
Q FD01872749_010 3 LVNPKDVNFSQTTINSAFDTPDGK-------------RSVQSVINDVR-KGNIKATDF-PA---IKVVNVKGQLVVRDGN 64 (107)
Q Consensus 3 ~vdP~~i~FsQ~sis~~F~~~~~~-------------~~I~d~i~~l~-~G~~~~~di-pP---IrVv~~~G~~~sLD~N 64 (107)
++||-+|..++ .++.|+ ..+.++++.|+ .|-+....- +| |.|=....-..+.-|-
T Consensus 133 SiDPleiFI~~-------~~G~G~IlA~~REiP~~a~~~~~~il~~l~~~gvl~iG~p~~~~lgipv~~~~~Giv~~gGl 205 (238)
T 3NEK_B 133 SLDPHEVFFNF-------VDCEKTFLAGFREVHRVAREKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKDMCGVVTMGGI 205 (238)
T ss_dssp SSCHHHHHGGG-------CCSSSEEEEEEEEEETTTHHHHHHHHHHHTCTTEEEECCTTCCBTTBCCCTTEEEEEEECTT
T ss_pred cCCHHHHHhcc-------cCCCeEEEeeeEEehHHHHHHHHHHHHHHhhcCcEEEcCCCccccCCcCCCCcEEEEEeecc
Q ss_pred hHHHHHHHCCCCcCeEEEcCcHHHHHHH
Q FD01872749_010 65 SRLAIAVKGKAQQIKVILETNVDQLRDF 92 (107)
Q Consensus 65 RRL~a~~~Agv~~i~~~~~t~~~~~~~l 92 (107)
--+.|++++|++ +.++.+.....+.+|
T Consensus 206 Np~Aal~E~Gi~-~~~~~~~~l~~~~~l 232 (238)
T 3NEK_B 206 NPLVLLKENEIP-IELKAMHEVVRFSDL 232 (238)
T ss_dssp HHHHHHHHTTCC-CEEEEEEEEEEGGGS
T ss_pred hHHHHHHHCCCC-CEEeecCceEeHHHC
No 23
>1NXU_A Hypothetical oxidoreductase yiaK; Hypothetical protein, Oxidoreductase, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; HET: SO4, MSE; 1.8A {Escherichia coli} SCOP: c.122.1.1
Probab=40.98 E-value=2.2e+02 Score=23.92 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH-------------HHHHHCCCCcCeEEEcCcHHHHHHHHHh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL-------------AIAVKGKAQQIKVILETNVDQLRDFTKR 95 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL-------------~a~~~Agv~~i~~~~~t~~~~~~~l~~k 95 (107)
+..+++.|++|.+.+. +.++|+...+....+|+|+-+ .-+++.|+--+-++-.+..-......++
T Consensus 49 l~~y~~~~~~g~~~~~--~~~~v~~~~~~~~~iDg~~~~G~~~~~~a~~~ai~~A~~~Gia~v~v~n~~h~G~~~~y~~~ 126 (333)
T 1NXU_A 49 FPRFIQQLENGDIIPD--AQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQ 126 (333)
T ss_dssp HHHHHHHHHTTSSCTT--CCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHH
T ss_pred HHHHHHHHHCCCCCCC--CCCEEEEcCCcEEEEeCCCChHHHHHHHHHHHHHHHHHHhCeEEEEEeCCCchhhchHHHHH
Q ss_pred hhcCCC
Q FD01872749_010 96 LRNNGL 101 (107)
Q Consensus 96 l~~n~~ 101 (107)
+.+.+.
T Consensus 127 ~a~~g~ 132 (333)
T 1NXU_A 127 AAEKGY 132 (333)
T ss_dssp HHHTTC
T ss_pred HHHcCC
No 24
>1R71_D Transcriptional repressor protein korB; IncP, plasmid partitioning, protein-DNA complex, heilx-turn-helix motif, transcription factor, ParB homologue, TRANSCRIPTION-DNA COMPLEX; HET: BRU; 2.2A {Escherichia coli} SCOP: a.4.14.1
Probab=40.78 E-value=66 Score=22.81 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHCCCCcCeEEEcCcHHHHHHHHHhhhcCCCC
Q FD01872749_010 66 RLAIAVKGKAQQIKVILETNVDQLRDFTKRLRNNGLP 102 (107)
Q Consensus 66 RL~a~~~Agv~~i~~~~~t~~~~~~~l~~kl~~n~~~ 102 (107)
|++|++++|++.|++.+.........+..-+.+..+.
T Consensus 1 R~~a~~~l~~~~i~~~v~~~~~~~~~l~eN~~r~~l~ 37 (178)
T 1R71_D 1 RYRGSKWAGKKSIPAFIDNDYNEADQVIENLQRNELT 37 (178)
T ss_dssp ---------------------CHHHHHHHHHTTTCCC
T ss_pred ChHHHHHcCCCeeCEEEeCCCCHHHHHHHHhcCCCCC
No 25
>PF04060.17 ; FeS ; Putative Fe-S cluster
Probab=32.81 E-value=1.2e+02 Score=15.29 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred cHHHHHHHHHcCCCCHhHCCC
Q FD01872749_010 28 SVQSVINDVRKGNIKATDFPA 48 (107)
Q Consensus 28 ~I~d~i~~l~~G~~~~~dipP 48 (107)
+..+++.+|..|..++++-++
T Consensus 13 ~c~~~a~~i~~g~~~~~~C~~ 33 (33)
T A5HYR7_CLOBH/4 13 GCDAYAQAVAEGAAPANACTV 33 (33)
T ss_pred cHHHHHHHHHcCCCCHHHCCC
No 26
>4H8A_A Ureidoglycolate dehydrogenase; Rossmann Fold, OXIDOREDUCTASE; HET: NAI; 1.64A {Escherichia coli} SCOP: c.122.1.1
Probab=32.26 E-value=4e+02 Score=22.51 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH-------------HHHHHCCCCcCeEEEcCcHHHHHHHHHh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL-------------AIAVKGKAQQIKVILETNVDQLRDFTKR 95 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL-------------~a~~~Agv~~i~~~~~t~~~~~~~l~~k 95 (107)
+..+++.|++|.+.+.. .++|+...+....+||++-+ .-+++.|+--+-++-.+..-....+..+
T Consensus 51 l~~y~~~i~~g~~~~~~--~~~i~~~~~~~~~iDg~~~~G~~~~~~a~~~ai~~A~~~Gi~~v~v~n~~h~G~lg~y~~~ 128 (339)
T 4H8A_A 51 VEYYAERISKGGTNREP--EFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQ 128 (339)
T ss_dssp HHHHHHHHHHTSSCSSC--CCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC--CcEEEeccCcEEEEcCCCccHHHHHHHHHHHHHHHHHHcCeEEEEEecCCchhHHHHHHHH
Q ss_pred hhcCCC
Q FD01872749_010 96 LRNNGL 101 (107)
Q Consensus 96 l~~n~~ 101 (107)
+.+.+.
T Consensus 129 ~a~~g~ 134 (339)
T 4H8A_A 129 AARAGF 134 (339)
T ss_dssp HHHTTS
T ss_pred HHHcCC
No 27
>4O7K_A Protein osa; Plasmid Fertility Inhibition, ANTITUMOR PROTEIN; HET: PO4; 1.748A {Shigella flexneri}
Probab=30.82 E-value=3.3e+02 Score=21.63 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHcCCCCHhHCCCeEEEEECC--eEEEecCChHHHHHHHCCCCcCeEEE--cCcHHHHHHHHH
Q FD01872749_010 30 QSVINDVRKGNIKATDFPAIKVVNVKG--QLVVRDGNSRLAIAVKGKAQQIKVIL--ETNVDQLRDFTK 94 (107)
Q Consensus 30 ~d~i~~l~~G~~~~~dipPIrVv~~~G--~~~sLD~NRRL~a~~~Agv~~i~~~~--~t~~~~~~~l~~ 94 (107)
....+.+..|.-.|-.+|-|.+-..++ ..-..||--|...+...|++.+||.+ ......+.++.+
T Consensus 104 ~~a~~~F~~g~~~PVplp~V~~~~~~~~~~V~FtdGrhRt~WLla~Ga~~fPV~v~~~~~A~~L~~~~G 172 (190)
T 4O7K_A 104 PSSAAHFAVGIDSPVPLADVSPTMILGHFAVCFTDGMTRSMWLLAHEVAVFPVLSRDEASAVMLAEHVG 172 (190)
T ss_dssp HHHHHHHHHCTTSCEECCEEEEEEETTEEEEEEEECHHHHHHHHHTTCSEEEEEESSHHHHHHHHHHHB
T ss_pred hHHHHHhhcCCCCCeeeeEEEEEeeCCeeEEEEccCchHHHHHHHCCCcEEeEEECCHHHHHHHHHHhC
No 28
>1V9N_A Malate dehydrogenase; Dehydrogenase, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, OXIDOREDUCTASE; HET: NDP, MSE; 2.1A {Pyrococcus horikoshii} SCOP: c.122.1.0
Probab=30.16 E-value=3.6e+02 Score=22.74 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH-------------HHHHHCCCCcCeEEEcCcHHHHHHHHHh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL-------------AIAVKGKAQQIKVILETNVDQLRDFTKR 95 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL-------------~a~~~Agv~~i~~~~~t~~~~~~~l~~k 95 (107)
+...++.|+.|.+.+.. .++|+...+....+|+++.+ .-+++.|+--+.++-.+.......+..+
T Consensus 60 l~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~vDg~~~~g~~~~~~a~~~a~~~A~~~Gi~~v~v~n~~~~g~l~~~~~~ 137 (360)
T 1V9N_A 60 LKRYVDGIISGGVNLHP--KIRVIREGPSYALIDGDEGLGQVVGYRSMKLAIKKAKDTGIGIVIARNSNHYGIAGYYALM 137 (360)
T ss_dssp HHHHHHHHHHTSSBSSC--CCEEEEEETTEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC--CcEEEEeCCcEEEEeCCCccHHHHHHHHHHHHHHHHHHhCEEEEEEeCCCCcchHHHHHHH
Q ss_pred hhcCCC
Q FD01872749_010 96 LRNNGL 101 (107)
Q Consensus 96 l~~n~~ 101 (107)
+...+.
T Consensus 138 ~a~~G~ 143 (360)
T 1V9N_A 138 AAEEGM 143 (360)
T ss_dssp HHTTTS
T ss_pred HHHcCC
No 29
>PF18315.5 ; VCH_CASS14 ; Integron cassette protein VCH_CASS1 chain
Probab=29.86 E-value=96 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeE-----EEecCCh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQL-----VVRDGNS 65 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~-----~sLD~NR 65 (107)
|++++-+|.-|-+--.|-.+|+|..++|.. +.+.|+|
T Consensus 19 V~~I~lal~g~Iiwr~d~~~i~v~~~~G~~an~lW~~i~g~r 60 (97)
T A9GUG2_SORC5/1 19 VNEIALALAGAIIWKKDDEPIKVMVQDGDTKNVLWARLGGKR 60 (97)
T ss_pred hHHHHHHHHhHHHhccCCCCEEEEEECCCcceEEEEEECCEE
No 30
>5VNY_A Lethal (2) giant discs 1, isoform B; ESCRT, ENDOCYTOSIS, PROTEIN BINDING; HET: MSE; 1.101A {Drosophila melanogaster}
Probab=28.28 E-value=1.4e+02 Score=18.78 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred ccHHHHHHHHHcC-CCCHhHCCC
Q FD01872749_010 27 RSVQSVINDVRKG-NIKATDFPA 48 (107)
Q Consensus 27 ~~I~d~i~~l~~G-~~~~~dipP 48 (107)
..+++++.++++| .+..+++||
T Consensus 39 k~~~~~i~~~~~G~~i~~~~lP~ 61 (66)
T 5VNY_A 39 KQYEDAIKLYKAGKPVPYDELPV 61 (66)
T ss_dssp HHHHHHHHHHHTTCCCCGGGSCC
T ss_pred HHHHHHHHHHHCCCCCCHHHCCC
No 31
>7MJ2_F Pyridinium-3,5-biscarboxylic acid mononucleotide synthase; Carboxylase, Hydrolase, LYASE (CARBON-CARBON); 2.8A {Lactobacillus plantarum}
Probab=24.23 E-value=87 Score=25.24 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred ccHHHHHHHHHcCCCCHhHC-CCeEEEEECCeEE-EecCChHHH
Q FD01872749_010 27 RSVQSVINDVRKGNIKATDF-PAIKVVNVKGQLV-VRDGNSRLA 68 (107)
Q Consensus 27 ~~I~d~i~~l~~G~~~~~di-pPIrVv~~~G~~~-sLD~NRRL~ 68 (107)
..+.++.+.+++|.+++++. .-++-..+++-.+ .+|-+|.++
T Consensus 2 ~~l~~lL~~~~~g~is~~~a~~~l~~~~~~~~~~a~~D~~R~~R 45 (256)
T 7MJ2_F 2 ATTAEILQQVAAGQLSPTAAAQQLEAGKTAALGFANVDLDRQRR 45 (256)
T ss_dssp --------------------------------------------
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHcCcccccCcceeCCChHHH
No 32
>2X06_G L-SULFOLACTATE DEHYDROGENASE; OXIDOREDUCTASE, HYPERTHERMOSTABLE, COENZYME M, METHANOGENS, COENZYME M BIOSYNTHESIS, PRO-S HYDROGEN TRANSFER, NAD-BINDING WITHOUT A ROSSMANN FOLD; HET: NAD, MSE; 2.5A {METHANOCALDOCOCCUS JANNASCHII} SCOP: c.122.1.1
Probab=24.16 E-value=4e+02 Score=22.23 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH-------------HHHHHCCCCcCeEEEcCcHHHHHHHHHh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL-------------AIAVKGKAQQIKVILETNVDQLRDFTKR 95 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL-------------~a~~~Agv~~i~~~~~t~~~~~~~l~~k 95 (107)
+..+++.|++|.+++.. .++|+...+....+|+++.+ ..+++.|+--+-++-.+.......+..+
T Consensus 49 l~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~vDg~~~~g~~~~~~a~~~a~~~A~~~Gi~~v~v~n~~~~g~l~~y~~~ 126 (344)
T 2X06_G 49 FPQYITALKLGNINPKP--DIKIVKESPATAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANHFGIAGYYSEL 126 (344)
T ss_dssp HHHHHHHHHHTSSCSSC--CCEEEEECSSEEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC--CcEEEEcCCcEEEEECCCCchHHHHHHHHHHHHHHHHHHCeEEEEEECCCCceehHHHHHH
Q ss_pred hhcCCC
Q FD01872749_010 96 LRNNGL 101 (107)
Q Consensus 96 l~~n~~ 101 (107)
+.+.+.
T Consensus 127 ~a~~G~ 132 (344)
T 2X06_G 127 AMNQDM 132 (344)
T ss_dssp HHTTTS
T ss_pred HHHCCc
No 33
>1Z2I_A malate dehydrogenase; MALATE DEHYDROGENASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics; HET: NAD; 2.2A {Agrobacterium tumefaciens} SCOP: c.122.1.0
Probab=23.49 E-value=2.1e+02 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH--HHHHHC
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 73 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL--~a~~~A 73 (107)
+..+++.|++|.+++.. .+.++...+....+|+|+.+ .++..|
T Consensus 58 l~~~~~~l~~g~~~~~~--~~~i~~~~~~~~~vD~~~~~g~~~~~~a 102 (358)
T 1Z2I_A 58 LAHYVTALEGGRLNRRP--QISRVSGFGAVETIDADHAHGARATYAA 102 (358)
T ss_dssp HHHHHHHHHHTSSCSSC--CCEEEECCTTEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCC--ccEEEeCCCcEEEEeCCCCChHHHHHHH
No 34
>PF01995.20 ; NRD1_2 ; NrpR regulatory domains NRD1 and 2
Probab=22.92 E-value=1.7e+02 Score=24.14 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred ccCHHHcccch--hhhhhhcCCCCCc----------ccHHHHHHHHHc---------CCCCHhHCCCeEEEEECCeEEEe
Q FD01872749_010 3 LVNPKDVNFSQ--TTINSAFDTPDGK----------RSVQSVINDVRK---------GNIKATDFPAIKVVNVKGQLVVR 61 (107)
Q Consensus 3 ~vdP~~i~FsQ--~sis~~F~~~~~~----------~~I~d~i~~l~~---------G~~~~~dipPIrVv~~~G~~~sL 61 (107)
++||-+|...+ .||+..-.++.|+ ...+++.+-|++ |. .++.-+.|=....-....
T Consensus 112 TiDP~elfi~~gmTsV~~~~~~G~G~ilA~~ReiP~~a~~~~~~il~~~g~~Gvl~ig~---~~~l~ipv~~~~~Giv~~ 188 (220)
T NRPR_METJA/86- 112 SIDPLRAFIEKKETDVMGIIENGEGYLPANFRYFGVEFLERFETILEIDELKCIISYGT---ENVLGLDVGDDKVGVALI 188 (220)
T ss_pred cCCHHHHHHhCCCCChhHHHhcCCceEeeeeEEecHHHHHHHHHHHHHcCCCeEEEEcc---ccccCCCCCCCeEEEEEE
Q ss_pred cCChHHHHHHHCCCCcCeEEEcCcHHHHHHH
Q FD01872749_010 62 DGNSRLAIAVKGKAQQIKVILETNVDQLRDF 92 (107)
Q Consensus 62 D~NRRL~a~~~Agv~~i~~~~~t~~~~~~~l 92 (107)
-|---+.|++++|++ +.++.+.....+.+|
T Consensus 189 gGlNp~Aal~E~Gi~-~~~~~~~~l~~~s~l 218 (220)
T NRPR_METJA/86- 189 GGLTPIAPFVENNYC-VEICPMSSIVRLESL 218 (220)
T ss_pred ecCcchHHHHHCCcc-cEEEecceEeeHHHc
No 35
>PF02615.18 ; Ldh_2 ; Malate/L-lactate dehydrogenase
Probab=22.90 E-value=2.5e+02 Score=23.56 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH--HHHHHC
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 73 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL--~a~~~A 73 (107)
+..+++.|++|.+.+.- .++|+...+....+|+++.+ +++..|
T Consensus 47 l~~y~~~~~~g~~~~~~--~~~~~~~~~~~~~vdg~~~~G~~~~~~a 91 (337)
T G5EDM5_CAEEL/1 47 LHIYVHDLMMKSTAVTG--TPQVLKSKGSTAWVDGNNLLGPVVGNFC 91 (337)
T ss_pred HHHHHHHHHcCCCCCCC--CCEEEEcCCcEEEEeCCCCcHHHHHHHH
No 36
>PF15517.10 ; TBPIP_N ; TBP-interacting protein N-terminus
Probab=22.36 E-value=97 Score=22.94 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred EEEEECCeEEEecCChHHHHHHHCCCCcCeEEEcCcHHHHHHHHH
Q FD01872749_010 50 KVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVILETNVDQLRDFTK 94 (107)
Q Consensus 50 rVv~~~G~~~sLD~NRRL~a~~~Agv~~i~~~~~t~~~~~~~l~~ 94 (107)
+|-.-|+-.|.+.+++=.-.-++++++ |.+.++...+.+..|.+
T Consensus 14 ~VR~LDDyhW~I~~d~I~G~HKKS~~~-v~I~vA~~rE~AeKlae 57 (100)
T Q8U365_PYRFU/3 14 KVRTIDDFHWHISDNLIHGIHKKSGLR-LEIRIAESKEAADKIAQ 57 (100)
T ss_pred heeeeeeeeEEEeCCEEEEEEccCCCe-EEEEEcCCHHHHHHHHh
No 37
>8GLV_6S FAP339; cilia, microtubule, dynein, MOTOR PROTEIN; HET: GDP, GTP, MG; 3.1A {Chlamydomonas reinhardtii}
Probab=22.24 E-value=1.9e+02 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred HHHHHHHHcCCCCHhHCCCeEEEEECC
Q FD01872749_010 30 QSVINDVRKGNIKATDFPAIKVVNVKG 56 (107)
Q Consensus 30 ~d~i~~l~~G~~~~~dipPIrVv~~~G 56 (107)
.+...+|.+|.--|=+- .+|||.|+|
T Consensus 34 ~~ALQaLsNG~~vPY~a-TLR~V~HeG 59 (87)
T 8GLV_6S 34 FRALQVLANGDEVPYEA-TLRNVIHDG 59 (87)
T ss_pred HHHHHHHhCCCCCCcHH-heeeeeecC
No 38
>PF21528.1 ; CC2D1A-B_DM14 ; Coiled-coil and C2 domain-containing protein 1, DM14 domain
Probab=22.18 E-value=2.3e+02 Score=16.22 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred ccHHHHHHHHHcC-CCCHhHCCC
Q FD01872749_010 27 RSVQSVINDVRKG-NIKATDFPA 48 (107)
Q Consensus 27 ~~I~d~i~~l~~G-~~~~~dipP 48 (107)
..+++++.+++.| .+..+++||
T Consensus 32 k~~~~~~~~~~~g~~~~~~~lP~ 54 (56)
T A0A6J1S960_FRA 32 KTLVDQIKSAQNGRPIKEEDIPP 54 (56)
T ss_pred HHHHHHHHHHHCCCCCCHHHCCC
No 39
>3I0P_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, SSGCID, NIAID, Infectious disease, Structural Genomics, Seattle Structural Genomics Center for; HET: NAD; 2.6A {Entamoeba histolytica} SCOP: c.122.1.0
Probab=21.78 E-value=2.8e+02 Score=23.75 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHH-HHHHHHcCCCCHhHCCCeEEEEECCeEEEecCChHH--HHHHHC
Q FD01872749_010 29 VQS-VINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 73 (107)
Q Consensus 29 I~d-~i~~l~~G~~~~~dipPIrVv~~~G~~~sLD~NRRL--~a~~~A 73 (107)
+.. +++.|++|.+.+.. .++|+...+....+||++.+ .+++.|
T Consensus 55 l~~~y~~~~~~g~i~~~~--~~~v~~~~~~~~~iDg~~~~G~~~~~~a 100 (365)
T 3I0P_A 55 FKTVYIDRIKKGMINPTA--KPSIIRETSTTCVLDGNNGFGHVNGTIG 100 (365)
T ss_dssp CCCCCCHHHHTTCSCTTC--CCEEEEECSSEEEEECTTCCHHHHHHHH
T ss_pred HhHHHHHHHHcCCCCCCC--CCEEEEcCCcEEEEcCCCcchhHHHHHH
No 40
>7ZSS_P de novo designed binder; SARS-COV2, de novo, design binder, spike, RBD, receptor binding domain, ANTIVIRAL PROTEIN; HET: NAG;{Severe acute respiratory syndrome coronavirus 2}
Probab=21.65 E-value=2.1e+02 Score=18.96 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred ccHHHHHHHHHcC-CCCHhHCCC
Q FD01872749_010 27 RSVQSVINDVRKG-NIKATDFPA 48 (107)
Q Consensus 27 ~~I~d~i~~l~~G-~~~~~dipP 48 (107)
.++++++.++++| .+..+++||
T Consensus 44 k~~~~~i~~~~~G~~i~~~~lPp 66 (79)
T 7ZSS_P 44 KQYEDAIKLYKAGKPVPYDELPV 66 (79)
T ss_dssp HHHHHHHHHHHHTCCCCTTTSCC
T ss_pred HHHHHHHHHHHCCCCCCHHHCCC
No 41
>3IMO_A Integron cassette protein; Novel, Integron protein, Vibrio cholerae, Argentinean O139 strain, UNKNOWN FUNCTION; 1.8A {Vibrio cholerae O139}
Probab=21.50 E-value=1.6e+02 Score=22.70 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred HHHHHHHHHcCCCCHhHCCCeEEEEECCeE-----EEecCCh
Q FD01872749_010 29 VQSVINDVRKGNIKATDFPAIKVVNVKGQL-----VVRDGNS 65 (107)
Q Consensus 29 I~d~i~~l~~G~~~~~dipPIrVv~~~G~~-----~sLD~NR 65 (107)
|++++-+|.-|-+--.|-.+|+|..++|+. +.+.|+|
T Consensus 49 V~~IilaLlG~Iiwr~d~~sI~v~~~~G~~an~lW~ti~G~r 90 (133)
T 3IMO_A 49 VEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGER 90 (133)
T ss_dssp GHHHHHHHHHHHHHHCCSSCCEEEESSSTTSEEEEEEETTEE
T ss_pred HHHHHHHHHhHHHhcCCCCCEEEEEeCCCcceEEEEEECCEE
No 42
>PF18006.5 ; SepRS_C ; O-phosphoseryl-tRNA synthetase C-terminal domain
Probab=21.39 E-value=2.9e+02 Score=15.92 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred EEEEECCeEEEecCChHHHHHHHCCCC
Q FD01872749_010 50 KVVNVKGQLVVRDGNSRLAIAVKGKAQ 76 (107)
Q Consensus 50 rVv~~~G~~~sLD~NRRL~a~~~Agv~ 76 (107)
+|+++||..+-+-.+-...-+.+.|++
T Consensus 2 eI~V~dGnI~Gip~~~~~~~~~~~Gv~ 28 (31)
T N0BDQ3_9EURY/4 2 EVVVYQGSILGVPRTDKWLHVFEHGFT 28 (31)
T ss_pred EEEEeCCcEEeeCCcchhHHHHhhcEe
No 43
>PF07879.15 ; PHB_acc_N ; PHB/PHA accumulation regulator DNA-binding domain
Probab=20.03 E-value=3.7e+02 Score=17.76 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred cCCCCCc-ccHHHHHHHHHcCCCCHhHCCCeEEEEEC
Q FD01872749_010 20 FDTPDGK-RSVQSVINDVRKGNIKATDFPAIKVVNVK 55 (107)
Q Consensus 20 F~~~~~~-~~I~d~i~~l~~G~~~~~dipPIrVv~~~ 55 (107)
++....+ .|++++++.+++|. +++|+..+
T Consensus 11 YDt~~~~yVtl~el~~li~~G~-------~~~V~d~~ 40 (61)
T G2KLR2_MICAA/1 11 YDTGRSSYVTLDDLCTMVKEER-------DFVVYDAK 40 (61)
T ss_pred eeCCCCCccCHHHHHHHHHhCC-------CEEEEeCC