Query FD01876805_01866 type IV secretion protein Rhs
Match_columns 107
No_of_seqs 109 out of 124
Neff 5.708
Searched_HMMs 86581
Date Tue Feb 27 20:40:42 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8240418.hhr -oa3m ../results/8240418.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6SDK_A Stage 0 sporulation pro 97.5 0.0006 7E-09 48.0 5.6 57 25-85 26-82 (199)
2 PF20188.2 ; DUF6551 ; Family o 97.2 0.0019 2.2E-08 48.4 5.8 51 27-82 15-68 (242)
3 7BNR_B ParB family protein; DN 97.2 0.0025 2.9E-08 45.6 5.8 55 27-85 28-82 (212)
4 1VZ0_A Chromosome-partitioning 97.1 0.0025 2.8E-08 46.7 5.7 77 1-85 25-101 (230)
5 6KY4_A Sulfiredoxin, chloropla 97.1 0.0067 7.8E-08 39.8 7.0 55 27-85 42-96 (112)
6 PF02195.22 ; ParBc ; ParB/Sulf 97.0 0.0051 5.9E-08 37.1 5.5 76 2-85 1-77 (89)
7 4UMK_B PROBABLE CHROMOSOME-PAR 97.0 0.0042 4.8E-08 46.7 5.8 77 1-85 35-111 (240)
8 1XW3_A SULFIREDOXIN; retroredu 96.9 0.0077 8.8E-08 38.9 6.1 74 2-85 17-95 (110)
9 7NFU_B Nucleoid occlusion prot 96.9 0.0069 8E-08 45.3 6.0 77 1-85 30-107 (252)
10 2HWJ_D Hypothetical protein At 96.6 0.0099 1.1E-07 45.7 5.2 90 1-101 11-107 (205)
11 5K5D_B ParB domain protein nuc 96.5 0.012 1.4E-07 46.8 5.7 71 1-82 13-83 (300)
12 7BM8_A Chromosome-partitioning 96.3 0.022 2.5E-07 43.3 5.9 55 27-85 58-115 (257)
13 6RYK_A ParB-like nuclease doma 96.1 0.034 3.9E-07 41.7 5.7 54 24-81 53-107 (229)
14 PF08857.15 ; ParBc_2 ; Putativ 95.7 0.027 3.1E-07 41.1 3.6 36 46-81 38-74 (153)
15 1VK1_A Conserved hypothetical 91.1 1.6 1.8E-05 33.2 5.9 56 27-85 37-94 (242)
16 6NR6_A Bifunctional transcript 91.1 1.8 2.1E-05 33.4 6.3 72 2-85 11-83 (254)
17 5UJE_A SbnI protein; staphylof 89.7 2.5 2.8E-05 32.3 6.0 53 27-82 29-82 (242)
18 6CKA_A Paratox; prophage, natu 83.9 3.9 4.5E-05 27.5 3.7 29 26-57 3-31 (68)
19 PF04060.17 ; FeS ; Putative Fe 36.5 97 0.0011 15.4 3.2 24 23-46 10-33 (33)
20 PF14072.10 ; DndB ; DNA-sulfur 33.2 3.5E+02 0.0041 21.9 6.2 57 24-81 46-133 (338)
21 PF12090.12 ; Spt20_SEP ; Spt20 33.0 31 0.00036 28.7 0.4 55 4-64 13-72 (275)
22 3ZGX_Z SEGREGATION AND CONDENS 32.4 92 0.0011 21.4 2.5 25 16-45 9-33 (94)
23 1NXU_A Hypothetical oxidoreduc 32.1 1.4E+02 0.0016 24.9 3.9 43 27-71 49-93 (333)
24 2K3U_A Chemotaxis inhibitory p 31.3 1.3E+02 0.0015 21.3 3.0 39 28-66 13-51 (91)
25 PF11434.12 ; CHIPS ; Chemotaxi 31.3 1.3E+02 0.0015 21.3 3.0 39 28-66 13-51 (91)
26 4O7K_A Protein osa; Plasmid Fe 31.0 3.1E+02 0.0036 21.6 5.4 53 28-80 104-158 (190)
27 PF19930.3 ; DUF6393 ; Family o 28.7 1.4E+02 0.0016 21.5 2.9 58 3-64 7-71 (96)
28 8GLV_6S FAP339; cilia, microtu 28.0 91 0.0011 22.2 1.9 26 28-54 34-59 (87)
29 1R71_D Transcriptional repress 27.0 83 0.00096 22.2 1.6 22 64-85 1-22 (178)
30 PF14805.10 ; THDPS_N_2 ; Tetra 26.5 2.8E+02 0.0032 17.9 3.9 24 27-58 29-53 (67)
31 6T9K_B Transcription factor SP 26.3 41 0.00047 31.4 -0.0 55 4-63 151-219 (604)
32 1Z2I_A malate dehydrogenase; M 26.0 1.6E+02 0.0019 24.5 3.3 43 27-71 58-102 (358)
33 PF09248.14 ; DUF1965 ; Domain 24.2 85 0.00098 20.0 1.1 33 24-64 35-67 (69)
34 6TB4_F Spt20; Transcriptional 24.0 91 0.0011 28.7 1.6 37 27-64 108-149 (517)
35 4HRS_A Small archaeal modifier 23.8 2.4E+02 0.0028 16.5 3.0 33 18-60 18-50 (67)
36 PF19702.3 ; DUF6200 ; Family o 22.0 1.7E+02 0.0019 20.4 2.2 27 27-53 44-73 (79)
37 PF18315.5 ; VCH_CASS14 ; Integ 20.8 1.3E+02 0.0015 21.5 1.6 37 27-63 19-60 (97)
38 4H8A_A Ureidoglycolate dehydro 20.7 2.9E+02 0.0033 23.1 3.8 43 27-71 51-95 (339)
No 1
>6SDK_A Stage 0 sporulation protein J; ParB, Chromosome segregation, Chromosome organization, DNA BINDING PROTEIN; HET: CDP, MSE; 1.81A {Bacillus subtilis (strain 168)} SCOP: d.268.1.0, a.4.14.0
Probab=97.48 E-value=0.0006 Score=47.98 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=47.6 Template_Neff=11.400
Q ss_pred ccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEEecchH
Q FD01876805_018 25 RSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 25 ~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~~~~~~ 85 (107)
..+..+.+.+.... -+.||.|...+|.++.+|||+|+.+++.++...|++.+....+
T Consensus 26 ~~~~~l~~si~~~g----~~~pi~v~~~~~~~~vi~G~~R~~a~~~~~~~~i~~~~~~~~~ 82 (199)
T 6SDK_A 26 EALAELKESVLQHG----ILQPLIVRKSLKGYDIVAGERRFRAAKLAGLDTVPAIVRELSE 82 (199)
T ss_dssp HHHHHHHHHHHHHC----CCSCEEEEECSSSEEEEECHHHHHHHHHTTCSEEEEEECCCCH
T ss_pred HHHHHHHHHHHHcC----CCCCEEEEECCCcEEEEechhHHHHHHHcCCCeecEEEecCCH
Confidence 46777777777644 3679999998888999999999999999999999999987555
No 2
>PF20188.2 ; DUF6551 ; Family of unknown function (DUF6551)
Probab=97.20 E-value=0.0019 Score=48.43 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCC---CccEEEEec
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKA---QQIKVILET 82 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~---~~I~v~~~~ 82 (107)
|.++.+.+..+ -++||.|...+|++|.+||.+||.+++.++. ..|||.+..
T Consensus 15 v~~l~~~~~~~-----~~~pi~v~~~~g~~~viDGqhR~~a~~~~~~~~~~~v~~~i~~ 68 (242)
T D4K186_9FIRM/3 15 VELIARDFNEY-----TANEPKISFRNGRYYVTDGQHTIEARILRNGGKDLPILCKVYT 68 (242)
T ss_pred HHHHHHhccHh-----hCCCCEEEEeCCeEEEeCChhHHHHHHHhcCCCCccEEEEEEc
No 3
>7BNR_B ParB family protein; DNA-binding protein, CTP, Myxococcus, DNA-segregation, DNA BINDING PROTEIN; HET: UFQ, GOL; 1.7A {Myxococcus xanthus (strain DK 1622)}
Probab=97.16 E-value=0.0025 Score=45.58 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEEecchH
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~~~~~~ 85 (107)
+.++.+.+.... .++||.|...+|.++.+||++|+.+++.++...|++.+....+
T Consensus 28 ~~~l~~si~~~g----~~~pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~~i~~~~~ 82 (212)
T 7BNR_B 28 LKELSESIKAQG----VLQPILVRKDGDGYRIIAGERRWRASQAAGLKEVPAIVRDVTE 82 (212)
T ss_dssp HHHHHHHHHHHC----CSSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECCCCH
T ss_pred HHHHHHHHHHhC----CccCEEEEEcCCceEEeecchHHHHHHHcCCCccCEEEECCCH
No 4
>1VZ0_A Chromosome-partitioning protein Spo0J; NUCLEAR PROTEIN, CHROMOSOME SEGREGATION, DNA-BINDING, HELIX-TURN-HELIX; HET: CO; 2.3A {Thermus thermophilus HB27} SCOP: a.4.14.1, d.268.1.1
Probab=97.13 E-value=0.0025 Score=46.69 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 1 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 1 ~i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
.+++++|...-......+ +. ..++++.+.|+.... ++||.|...+|.++.+||++|+.+++.++...|++.+
T Consensus 25 ~i~i~~i~~~~~~~r~~~---~~-~~~~~l~~si~~~g~----~~pi~v~~~~~~~~i~dG~~R~~a~~~~~~~~i~~~v 96 (230)
T 1VZ0_A 25 RLPLASIRPNPRQPRKRF---AE-ESLKELADSIREKGL----LQPLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVV 96 (230)
T ss_dssp EEEGGGEECCCCCHHHHH---HH-HHHHHHHHHHHHHCC----SSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEE
T ss_pred EccHHHCCCCCCCCcccC---CH-HHHHHHHHHHHHhCC----CCCEEEEEcCCeEEEEeChHHHHHHHHcCCCeeCEEE
Q ss_pred ecchH
Q FD01876805_018 81 ETNVD 85 (107)
Q Consensus 81 ~~~~~ 85 (107)
....+
T Consensus 97 ~~~~~ 101 (230)
T 1VZ0_A 97 KDLTD 101 (230)
T ss_dssp CCCCH
T ss_pred ecCCH
No 5
>6KY4_A Sulfiredoxin, chloroplastic/mitochondrial; sulfiredoxin, cysteine, sulfinic acid, peroxiredoxin repair protein, arabidopsis thaliana, antioxidant, oxidoreductase; HET: PO4, ADP; 3.2A {Arabidopsis thaliana}
Probab=97.10 E-value=0.0067 Score=39.83 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEEecchH
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~~~~~~ 85 (107)
++++.+.++.... .+||.|...+|.++.+||++|+.+++.++...|++.+....+
T Consensus 42 ~~~l~~s~~~~g~----~~pi~v~~~~~~~~ii~G~~R~~aa~~~~~~~i~~~v~~~~~ 96 (112)
T 6KY4_A 42 VKELMDSIRQIGL----QVPIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTK 96 (112)
T ss_dssp HHHHHHHHHHHCC----CSCEEEEEETTEEECCSCHHHHHHHHHTTCSEEEEEEEECCH
T ss_pred HHHHHHHHHHcCC----CCCeEEEEECCEEEEEcCchHHHHHHHhCCCeeeEEEEeCCH
No 6
>PF02195.22 ; ParBc ; ParB/Sulfiredoxin domain
Probab=97.03 E-value=0.0051 Score=37.11 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred CCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEEC-CEEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 2 VNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVK-GQLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 2 i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~-G~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
++.++|...+......+ +. ..+..+.+.++..... +|+.|.... |.++.+||++|+.+++.++...|++.+
T Consensus 1 ~~~~~i~~~~~~~~~~~---~~-~~~~~l~~~~~~~g~~----~pi~~~~~~~~~~~v~~G~~r~~~~~~~~~~~i~~~~ 72 (89)
T PARB_PSEPK/39- 1 LPVELVQRGKYQPRRDM---DP-EALEELAHSIRNHGVM----QPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAMV 72 (89)
T ss_pred CCHHHccCCCCCCcccC---CH-HHHHHHHHHHHHcCCc----cCEEEEEcCCCCEEEeeChhHHHHHHHhCCCccCEEE
Q ss_pred ecchH
Q FD01876805_018 81 ETNVD 85 (107)
Q Consensus 81 ~~~~~ 85 (107)
....+
T Consensus 73 ~~~~~ 77 (89)
T PARB_PSEPK/39- 73 REVPD 77 (89)
T ss_pred ecCCH
No 7
>4UMK_B PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB; DNA BINDING PROTEIN-DNA COMPLEX; HET: SO4; 3.096A {HELICOBACTER PYLORI}
Probab=96.98 E-value=0.0042 Score=46.70 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 1 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 1 ~i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
.++++.|..........+. + ..++++...+.... -++||.|+..+|.++.+||++|+++.+.++...|++.+
T Consensus 35 ~i~l~~i~~~~~~~r~~~~--~--~~~~~l~~si~~~G----~~~Pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~~v 106 (240)
T 4UMK_B 35 ELGIDEVMPNPYQPRKVFS--E--DSLEELAQSIKEHG----LLQPVLVVSENGRYHLIAGERRLRASKLAKMPTIKAIV 106 (240)
T ss_dssp ----------CCCSSCCCC--C--CHHHHHSSTTTTTT----CCCCCCCEEEETTEEEESCGGGHHHHHTTSSSCCCCCC
T ss_pred EecHHHcCCCCCCcccCCC--H--HHHHHHHHHHHHcC----CCcCEEEEeeCCEEEEEeChhHHHHHHHcCCCcceEEE
Q ss_pred ecchH
Q FD01876805_018 81 ETNVD 85 (107)
Q Consensus 81 ~~~~~ 85 (107)
....+
T Consensus 107 ~~~~~ 111 (240)
T 4UMK_B 107 VDIEQ 111 (240)
T ss_dssp SEEEH
T ss_pred EeCCH
No 8
>1XW3_A SULFIREDOXIN; retroreduction, sulfinic acid, peroxiredoxin, ATP, OXIDOREDUCTASE; 1.65A {Homo sapiens} SCOP: l.1.1.1, d.268.1.4
Probab=96.94 E-value=0.0077 Score=38.88 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEECCE-----EEECCCChhHHHHHhcCCCcc
Q FD01876805_018 2 VNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQ-----LVVRDGNSRLAIAVKGKAQQI 76 (107)
Q Consensus 2 i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~-----~~slD~NRRL~~fk~a~~~~I 76 (107)
+.+++|.+.+ .... +. ..+.++.+.++..... .|||.|...++. ++.+||++|+.+.+.++...|
T Consensus 17 i~~~~i~~~~----~~~~--~~-~~~~~l~~si~~~g~~---~~pi~v~~~~~~~~~~~~~ii~G~~R~~a~~~~~~~~i 86 (110)
T 1XW3_A 17 VPLSVLIRPL----PSVL--DP-AKVQSLVDTIREDPDS---VPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 86 (110)
T ss_dssp EEGGGEECCS----CCCC--CH-HHHHHHHHHHHHCGGG---SCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred EeHHHccCCC----CCCC--CH-HHHHHHHHHHHhCCCC---CCCeEEEEEeCCCCCceEEEEcchHHHHHHHHhccCCC
Q ss_pred EEEEecchH
Q FD01876805_018 77 KVILETNVD 85 (107)
Q Consensus 77 ~v~~~~~~~ 85 (107)
+|.+.....
T Consensus 87 ~~~~~~~~~ 95 (110)
T 1XW3_A 87 PAKLVQSTL 95 (110)
T ss_dssp EEEEEEECH
T ss_pred CeEEEeCCH
No 9
>7NFU_B Nucleoid occlusion protein; CTP switch, chromosome segregation, protein-DNA recognition, peripheral membrane protein, DNA BINDING PROTEIN; HET: SO4; 2.5A {Geobacillus thermoleovorans CCB_US3_UF5}
Probab=96.85 E-value=0.0069 Score=45.32 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEE-CCEEEECCCChhHHHHHhcCCCccEEE
Q FD01876805_018 1 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQIKVI 79 (107)
Q Consensus 1 ~i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~-~G~~~slD~NRRL~~fk~a~~~~I~v~ 79 (107)
.+++++|..........+. . ..+.++.+.+..... +.||.|... +|.++.+|||+|+.+++.+|...|++.
T Consensus 30 ~i~~~~i~~~~~~~r~~~~--~--~~~~~l~~si~~~g~----~~Pi~v~~~~~~~y~vidG~~R~~a~~~~~~~~i~~~ 101 (252)
T 7NFU_B 30 HIPVKSIIPNRFQPRTMFD--E--EKIDELALTIRTHGI----IQPIVVRECGNGRFEIIAGERRWRAVQKLGWTEIPAI 101 (252)
T ss_dssp EEEGGGEECCTTSCCCCCC--H--HHHHHHHHHHHHHCC----SSCEEEEEETTTEEEEEECHHHHHHHHHTTCSEEEEE
T ss_pred eCCHHHcCCCCCCCcccCC--H--HHHHHHHHHHHHcCC----CCCEEEEEcCCCcEEEecChhHHHHHHHhCCCcCCEE
Q ss_pred EecchH
Q FD01876805_018 80 LETNVD 85 (107)
Q Consensus 80 ~~~~~~ 85 (107)
+....+
T Consensus 102 v~~~~~ 107 (252)
T 7NFU_B 102 IKNLND 107 (252)
T ss_dssp ECCCCH
T ss_pred EECCCH
No 10
>2HWJ_D Hypothetical protein Atu1540; Agrobacterium tumefaciens, Hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; HET: MSE; 2.61A {Agrobacterium tumefaciens str. C58} SCOP: d.268.1.3
Probab=96.57 E-value=0.0099 Score=45.70 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcC----CCCHHHCCCeEEEE-ECCEEEECCCChhHHHHHhcCCCc
Q FD01876805_018 1 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKG----NIKATDFPAIKVVN-VKGQLVVRDGNSRLAIAVKGKAQQ 75 (107)
Q Consensus 1 ~i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G----~~~~~dip~I~V~~-~~G~~~slD~NRRL~~fk~a~~~~ 75 (107)
.++..+|+=||..|+ . ..|...+..+++. .-....-.+|.|+. .+|++|.+||+-|++++..+|...
T Consensus 11 ~v~i~~L~PTQ~~vg---~-----~~v~~~~~~~~~~~~~~~~~~l~~~~ipvvigp~g~~yliDGHHr~~a~~~~G~~~ 82 (205)
T 2HWJ_D 11 RIAIDKLRPTQIAVG---F-----REVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEH 82 (205)
T ss_dssp EEETTTSBCSBSEEC---H-----HHHHHHHHHHTTCC------CTTCCEEEEEECSTTCEEECSCHHHHHHHHTTTCCE
T ss_pred EeeHHHcCCCchhcC---H-----HHHHHHHHHHHHhchhhccccccCceeeEEECCCCCEEEeCChHHHHHHHHhCCCE
Q ss_pred cEEEEecchHH--HHHHHHhccCCCCCC
Q FD01876805_018 76 IKVILETNVDQ--LRDFTKRLRNNGLPN 101 (107)
Q Consensus 76 I~v~~~~~~~~--~~~~~~K~tt~~~~n 101 (107)
|+|.++..-.- ..+|..++.. .+
T Consensus 83 v~v~v~~d~s~l~~~~Fw~~m~~---~~ 107 (205)
T 2HWJ_D 83 VLTSEVAKFSHLGKDEFWSVMDH---RN 107 (205)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHH---TT
T ss_pred EEEEEechhccCCHHHHHHHHHH---CC
No 11
>5K5D_B ParB domain protein nuclease; ParB-N, pnob8, partition, HYDROLASE; HET: CIT, MSE; 2.45A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.012 Score=46.78 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 1 LVNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 1 ~i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
.|+++.|.... .....|. +. ..+.++.+.|+... -+.||.| +|.+..+||+||+.+++.+|...|++.+
T Consensus 13 ~i~i~~i~~~~-~~~~~~~--~~-~~~~~L~~sI~~~G----~~~Pi~v---~~~~~iidG~~R~~A~~~lg~~~i~~~v 81 (300)
T 5K5D_B 13 VVSIEKLKEDD-EFKTMVP--SN-NSREDLEKSLREKS----QIFPLIA---DRNYVLIDGYTRLDIMKKLGFKEVKILK 81 (300)
T ss_dssp EEEGGGCEECH-HHHHSSC--CC-TTHHHHHHHHHHHC----SCSCEEE---CTTCEEEECHHHHHHHHHTTCCEEEEEE
T ss_pred EeCHHHCCCCh-hHhccCC--Ch-hhHHHHHHHHHHhc----CCCCEEE---CCCCEEeCCHHHHHHHHHcCCCEeeEEE
Q ss_pred ec
Q FD01876805_018 81 ET 82 (107)
Q Consensus 81 ~~ 82 (107)
..
T Consensus 82 ~~ 83 (300)
T 5K5D_B 82 YD 83 (300)
T ss_dssp ES
T ss_pred EC
No 12
>7BM8_A Chromosome-partitioning protein ParB; chromosome segregation, CTP, molecular gates, protein-DNA recognition, DNA BINDING PROTEIN; HET: CTP; 2.73A {Caulobacter vibrioides (strain NA1000 / CB15N)} SCOP: d.268.1.0, a.4.14.0
Probab=96.35 E-value=0.022 Score=43.31 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEEC---CEEEECCCChhHHHHHhcCCCccEEEEecchH
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVK---GQLVVRDGNSRLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~---G~~~slD~NRRL~~fk~a~~~~I~v~~~~~~~ 85 (107)
++++.++|..... ++||.|...+ |.++.+||++|+.+++.++...|++.+....+
T Consensus 58 ~~~L~~si~~~G~----~~Pi~v~~~~~~~~~y~vidG~~R~~a~~~l~~~~i~~~v~~~~~ 115 (257)
T 7BM8_A 58 LEDLSNSIREKGV----LQPILVRPSPDTAGEYQIVAGERRWRAAQRAGLKTVPIMVRELDD 115 (257)
T ss_dssp HHHHHHHHHHHCC----CSCEEEEECSSSTTCEEEEECHHHHHHHHHTTCSEEEEEECCCCH
T ss_pred HHHHHHHHHHhCC----CCCeEEEECCCCCCcEEEeeChhHHHHHHHcCCCeecEEEEeCCH
No 13
>6RYK_A ParB-like nuclease domain protein; ParABS, cytoskeleton, bactofilin, CTP, CELL CYCLE; HET: CTP; 1.7A {Myxococcus xanthus DK 1622}
Probab=96.10 E-value=0.034 Score=41.69 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CccHHHHHHHHHcCCCCHHHCCCeEEEEE-CCEEEECCCChhHHHHHhcCCCccEEEEe
Q FD01876805_018 24 KRSVQSVINDVRKGNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQIKVILE 81 (107)
Q Consensus 24 ~~si~~t~~~L~~G~~~~~dip~I~V~~~-~G~~~slD~NRRL~~fk~a~~~~I~v~~~ 81 (107)
...++++.+.+.... -+.|+.|... +|.++.+||+||+.+++.++...|++.+.
T Consensus 53 ~~~~~~l~~si~~~g----~~~pi~v~~~~~~~y~lv~G~~R~~a~~~~~~~~i~~~v~ 107 (229)
T 6RYK_A 53 EGDVSGLATDIARLG----QLFPVDVRPAGEDRYQLVCGFRRVAALRFLKRDAVQARIH 107 (229)
T ss_dssp CCCCHHHHHHHHHHC----CCSCEEEEECSTTCEEEEECHHHHHHHHTTTCSEEEEEEE
T ss_pred ccchHHHHHHHHHhC----CCCCeEEEECCCCCEEEEeCcHHHHHHHHcCCCeeeEEEE
No 14
>PF08857.15 ; ParBc_2 ; Putative ParB-like nuclease
Probab=95.69 E-value=0.027 Score=41.09 Aligned_cols=36 Identities=11% Similarity=-0.039 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CeEEEE-ECCEEEECCCChhHHHHHhcCCCccEEEEe
Q FD01876805_018 46 AIKVVN-VKGQLVVRDGNSRLAIAVKGKAQQIKVILE 81 (107)
Q Consensus 46 ~I~V~~-~~G~~~slD~NRRL~~fk~a~~~~I~v~~~ 81 (107)
+|.|+. .+|.+|.+||+.||.++.++|...|+|.+.
T Consensus 38 ~ipvv~~~~g~~~liDGHHr~~a~~~~g~~~v~v~v~ 74 (153)
T S5Y864_PARAH/7 38 LLPCVLGPKKRYHLIDNHHLALALHLEGVTAVLVNVV 74 (153)
T ss_pred CcCEEECCCCcEEEECCHHHHHHHHHccCceeEEEEe
No 15
>1VK1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, Pyrococcus furiosus, conserved hypothetical protein, structural genomics, PSI, Protein Structure Initiative, Southeast; HET: MLY; 1.2A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=91.06 E-value=1.6 Score=33.18 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEEC--CEEEECCCChhHHHHHhcCCCccEEEEecchH
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVK--GQLVVRDGNSRLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~--G~~~slD~NRRL~~fk~a~~~~I~v~~~~~~~ 85 (107)
++++.+.+..-.. ..+||-|.... +.++-+||++|+.+++.++...|++.+.+..+
T Consensus 37 ~~~l~~~i~~~G~---~~~Pi~v~~~~~~~~~~i~dG~hR~~a~~~~~~~~i~~~~~~~~~ 94 (242)
T 1VK1_A 37 LEDFIESVTGSGI---FWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFD 94 (242)
T ss_dssp HHHHHHHHHHHCE---ECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECTTS
T ss_pred HHHHHHHHHhcCC---ccCCEEEEeCCCCCeEEEcCChHHHHHHHHhCCCeecEEEEeCCC
No 16
>6NR6_A Bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI; free serine kinase, siderophore, ParB/Srx family, staphyloferrin B, BIOSYNTHETIC PROTEIN; HET: ADP; 1.9A {Staphylococcus pseudintermedius}
Probab=91.05 E-value=1.8 Score=33.37 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCHHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEE-CCEEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 2 VNPKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNV-KGQLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 2 i~P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~-~G~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
+++++|..-+. . +. ..++++.+.+....+... ||-|... ++.++-+||+.|+.+++.++...|++.+
T Consensus 11 i~~~~i~~he~------~--~~-~~~~~l~~~i~~~g~~~~---Pii~~~~~~~~~~i~DGhhR~~a~~~~~~~~v~~~~ 78 (254)
T 6NR6_A 11 IPVDKIDLHEA------F--EP-SRLEKTKESIAKEQHLRH---PVLVVKTLFGRYMVIDGVHRFMSLKALGCEVIPVQV 78 (254)
T ss_dssp EEGGGEECCBC------C--CH-HHHHHHHHHHHHHCEESS---CEEEEECGGGCEEEEECHHHHHHHHHTTCSEEEEEE
T ss_pred eeHHHccCCCc------c--CH-HHHHHHHHHHHHcCCccC---CeEEEEeCCCeEEEccCchHHHHHHHcCCCEEcEEE
Q ss_pred ecchH
Q FD01876805_018 81 ETNVD 85 (107)
Q Consensus 81 ~~~~~ 85 (107)
++..+
T Consensus 79 ~~~~~ 83 (254)
T 6NR6_A 79 IQRTQ 83 (254)
T ss_dssp CCGGG
T ss_pred ECccc
No 17
>5UJE_A SbnI protein; staphyloferrin B, heme, regulator, siderophore, GENE REGULATION; HET: GOL, MSE; 2.5A {Staphylococcus aureus}
Probab=89.69 E-value=2.5 Score=32.27 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEEC-CEEEECCCChhHHHHHhcCCCccEEEEec
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVK-GQLVVRDGNSRLAIAVKGKAQQIKVILET 82 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~-G~~~slD~NRRL~~fk~a~~~~I~v~~~~ 82 (107)
++++.+.|........ ||-|...+ +.++-+||++|+.+++..+...|++.+++
T Consensus 29 ~~~l~~~i~~~G~~~~---Pi~v~~~~~~~~~i~dG~~R~~a~~~~~~~~i~~~~~~ 82 (242)
T 5UJE_A 29 LEKTKSSIEADDFIRH---PILVTAMQHGRYMVIDGVHRYTSLKALGCKKVPVQEIH 82 (242)
T ss_dssp HHHHHHHHHHHTEESS---CEEEEECSTTCEEEEECHHHHHHHHHTTCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCCCC---CeEEEEccCCeEEEcCCHHHHHHHHHcCCCccCEEEEc
No 18
>6CKA_A Paratox; prophage, natural competence, Streptococcus, protein binding, VIRAL PROTEIN; HET: MSE; 1.559A {Streptococcus pyogenes serotype M3}
Probab=83.87 E-value=3.9 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred cHHHHHHHHHcCCCCHHHCCCeEEEEECCEEE
Q FD01876805_018 26 SVQSVINDVRKGNIKATDFPAIKVVNVKGQLV 57 (107)
Q Consensus 26 si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~ 57 (107)
+++++.+++.+|.++-+ .+.|+++||++|
T Consensus 3 ~~defkeAId~G~I~gd---tV~IVRknGkIf 31 (68)
T 6CKA_A 3 YIDEFKEAIDKGYILGD---TVAIVRKNGKIF 31 (68)
T ss_dssp CHHHHHHHHHTTSSCSS---EEEEEEETTEEE
T ss_pred cHHHHHHHHHcCCCCCC---eEEEEEeCCEEE
No 19
>PF04060.17 ; FeS ; Putative Fe-S cluster
Probab=36.50 E-value=97 Score=15.45 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCccHHHHHHHHHcCCCCHHHCCC
Q FD01876805_018 23 GKRSVQSVINDVRKGNIKATDFPA 46 (107)
Q Consensus 23 G~~si~~t~~~L~~G~~~~~dip~ 46 (107)
|..+..+++.+|..|..++++-+.
T Consensus 10 g~~~c~~~a~~i~~g~~~~~~C~~ 33 (33)
T A5HYR7_CLOBH/4 10 GYAGCDAYAQAVAEGAAPANACTV 33 (33)
T ss_pred CCCcHHHHHHHHHcCCCCHHHCCC
No 20
>PF14072.10 ; DndB ; DNA-sulfur modification-associated
Probab=33.23 E-value=3.5e+02 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CccHHHHHHHHHcCCCCHHHCCCeEEEE------------------------ECCEEEECCCChhHHHHHhc-------C
Q FD01876805_018 24 KRSVQSVINDVRKGNIKATDFPAIKVVN------------------------VKGQLVVRDGNSRLAIAVKG-------K 72 (107)
Q Consensus 24 ~~si~~t~~~L~~G~~~~~dip~I~V~~------------------------~~G~~~slD~NRRL~~fk~a-------~ 72 (107)
...+.+..+-|.++.-. .-+|+|.+.. .+..++-+||.-||+++..| .
T Consensus 46 ~~rv~~I~~yl~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~iiDGQHR~~a~~~~~~~~~~~~ 124 (338)
T Q16C17_ROSDO/8 46 NVRVPQIASYLSENFEE-YTLSSLCASVDGDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAIEEALKTRPKLE 124 (338)
T ss_pred cccHHHHHHHHHhCCcc-cccCCeEEEEcCceEEecCCCCCCcCCcEEEEEcCCCEEEEcChhHHHHHHHHHHHhCcccc
Q ss_pred CCccEEEEe
Q FD01876805_018 73 AQQIKVILE 81 (107)
Q Consensus 73 ~~~I~v~~~ 81 (107)
-..|+|.+.
T Consensus 125 ~~~i~v~i~ 133 (338)
T Q16C17_ROSDO/8 125 NETISVVLF 133 (338)
T ss_pred CCeeEEEEE
No 21
>PF12090.12 ; Spt20_SEP ; Spt20, SEP domain
Probab=32.99 E-value=31 Score=28.73 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred HHHceecchhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeE---EEEECCEEEE--CCCChh
Q FD01876805_018 4 PKDVNFSQTTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIK---VVNVKGQLVV--RDGNSR 64 (107)
Q Consensus 4 P~~IrFTQdsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~---V~~~~G~~~s--lD~NRR 64 (107)
|...+|.+..-.-.+. ..+..+++.|..|.+.+.-+.-+. |.+++|.+++ .| .|.
T Consensus 13 p~~f~f~~~~~~~~Y~-----~~~~~fL~~I~~~~IP~~lle~l~~~~v~fydGclIvEV~D-~R~ 72 (275)
T A6QXU6_AJECN/1 13 PTHFRFDQQDGSFPYN-----SEMKIFMKHLKAGTVPHDMMEELVRCGVRFYENCLIVRVVD-HKS 72 (275)
T ss_pred CCCeeecCCCCceeCC-----hHHHHHHHHHHcCCCCHHHHHHHHHcCCcEEeCeEEEEEEe-Ccc
No 22
>3ZGX_Z SEGREGATION AND CONDENSATION PROTEIN A; CELL CYCLE; 3.4A {BACILLUS SUBTILIS}
Probab=32.40 E-value=92 Score=21.44 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred hhcCCCCCCccHHHHHHHHHcCCCCHHHCC
Q FD01876805_018 16 SAFDTPDGKRSVQSVINDVRKGNIKATDFP 45 (107)
Q Consensus 16 ~~F~~~dG~~si~~t~~~L~~G~~~~~dip 45 (107)
..|. .+++.+++.++.|+++|.+++
T Consensus 9 ~~f~-----gpl~~Ll~lv~~~~id~~~v~ 33 (94)
T 3ZGX_Z 9 DTFE-----GPLDLLLHLINRLEIDIYDIP 33 (94)
T ss_dssp -CCS-----CHHHHHHHHHHHHHHHHTSSS
T ss_pred cCCC-----ChHHHHHHHHHhcCCCHhhCC
No 23
>1NXU_A Hypothetical oxidoreductase yiaK; Hypothetical protein, Oxidoreductase, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; HET: SO4, MSE; 1.8A {Escherichia coli} SCOP: c.122.1.1
Probab=32.12 E-value=1.4e+02 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhH--HHHHhc
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 71 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL--~~fk~a 71 (107)
+...++.|.+|.+++. +.++|+...+....+|||+-+ ++.+.|
T Consensus 49 l~~y~~~~~~g~~~~~--~~~~v~~~~~~~~~iDg~~~~G~~~~~~a 93 (333)
T 1NXU_A 49 FPRFIQQLENGDIIPD--AQPKRITSLGAIEQWDAQRSIGNLTAKKM 93 (333)
T ss_dssp HHHHHHHHHTTSSCTT--CCCEEEEEETTEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCC--CCCEEEEcCCcEEEEeCCCChHHHHHHHH
No 24
>2K3U_A Chemotaxis inhibitory protein; Chemotaxis Inhibitory Protein (CHIPS), sulfated tyrosine, GPCR membrane protein C5aR, anaphylotoxin C5a, Staphylococcus Aureus, complement cascade; HET: TYS, ACE, NH2; NMR {Staphylococcus aureus subsp. aureus str. Newman}
Probab=31.34 E-value=1.3e+02 Score=21.35 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=0.0 Template_Neff=1.500
Q ss_pred HHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHH
Q FD01876805_018 28 QSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLA 66 (107)
Q Consensus 28 ~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~ 66 (107)
+.+...|+.|...-.+|..|-++-..|.+|++|-|--|.
T Consensus 13 ~rLR~~iKkgtkn~~~F~KMVI~TE~~~yYTv~L~~PLA 51 (91)
T 2K3U_A 13 ERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLA 51 (91)
T ss_dssp HHHHHHHHHHCSCCTTEEEEEEECSTTCEEEEETTSCCC
T ss_pred HHHHHHHhhcCcChhHheeeEEEecCCeEEEEEecCccc
No 25
>PF11434.12 ; CHIPS ; Chemotaxis-inhibiting protein CHIPS
Probab=31.34 E-value=1.3e+02 Score=21.35 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=0.0 Template_Neff=1.500
Q ss_pred HHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhHH
Q FD01876805_018 28 QSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRLA 66 (107)
Q Consensus 28 ~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL~ 66 (107)
+.+...|+.|...-.+|..|-++-..|.+|++|-|--|.
T Consensus 13 ~rLR~~iKkgtkn~~~F~KMVI~TE~~~yYTv~L~~PLA 51 (91)
T CHIPS_STAA8/59 13 ERLRNYLKKGTKNSAQFEKMVILTENKGYYTVYLNTPLA 51 (91)
T ss_pred HHHHHHHhhcCcChhHheeeEEEecCCeEEEEEecCccc
No 26
>4O7K_A Protein osa; Plasmid Fertility Inhibition, ANTITUMOR PROTEIN; HET: PO4; 1.748A {Shigella flexneri}
Probab=30.96 E-value=3.1e+02 Score=21.61 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHcCCCCHHHCCCeEEEEECC--EEEECCCChhHHHHHhcCCCccEEEE
Q FD01876805_018 28 QSVINDVRKGNIKATDFPAIKVVNVKG--QLVVRDGNSRLAIAVKGKAQQIKVIL 80 (107)
Q Consensus 28 ~~t~~~L~~G~~~~~dip~I~V~~~~G--~~~slD~NRRL~~fk~a~~~~I~v~~ 80 (107)
....+.+..|.-.|-.+|.|.+...++ .+--.||-=|..-+...|+..+||.+
T Consensus 104 ~~a~~~F~~g~~~PVplp~V~~~~~~~~~~V~FtdGrhRt~WLla~Ga~~fPV~v 158 (190)
T 4O7K_A 104 PSSAAHFAVGIDSPVPLADVSPTMILGHFAVCFTDGMTRSMWLLAHEVAVFPVLS 158 (190)
T ss_dssp HHHHHHHHHCTTSCEECCEEEEEEETTEEEEEEEECHHHHHHHHHTTCSEEEEEE
T ss_pred hHHHHHhhcCCCCCeeeeEEEEEeeCCeeEEEEccCchHHHHHHHCCCcEEeEEE
No 27
>PF19930.3 ; DUF6393 ; Family of unknown function (DUF6393)
Probab=28.73 E-value=1.4e+02 Score=21.55 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred CHHHceecc----hhhhhhcCCCCCCccHHHHHHHHHc--CCCCHHHCCCeEEEEECCEEEECCCCh-h
Q FD01876805_018 3 NPKDVNFSQ----TTINSAFDTPDGKRSVQSVINDVRK--GNIKATDFPAIKVVNVKGQLVVRDGNS-R 64 (107)
Q Consensus 3 ~P~~IrFTQ----dsIs~~F~~~dG~~si~~t~~~L~~--G~~~~~dip~I~V~~~~G~~~slD~NR-R 64 (107)
.+..++|.| +-++..|- -| .+-++.++++.+ ...-+++.+..-|+..+..-+.+| ++ |
T Consensus 7 s~kpv~feq~DVS~IV~ky~P--~G-t~k~~V~~~f~~~~~~~i~ed~~~~lvvrd~kg~a~l~-Pdar 71 (96)
T A0A1C7P3K5_9HY 7 SRKPVRFEQIDVDEIVLKHFP--KG-TGRTAVNEALKASVSSKITKNAADELVVRDDRGRAMLD-PDAR 71 (96)
T ss_pred CCCCCChhhcchHHHHHHhCC--CC-CCHHHHHHHHhhcccceeeecCCCeEEEEcCCCccccc-CCCC
No 28
>8GLV_6S FAP339; cilia, microtubule, dynein, MOTOR PROTEIN; HET: GDP, GTP, MG; 3.1A {Chlamydomonas reinhardtii}
Probab=27.97 E-value=91 Score=22.21 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred HHHHHHHHcCCCCHHHCCCeEEEEECC
Q FD01876805_018 28 QSVINDVRKGNIKATDFPAIKVVNVKG 54 (107)
Q Consensus 28 ~~t~~~L~~G~~~~~dip~I~V~~~~G 54 (107)
...+++|.+| ..+--=-.+|||.|+|
T Consensus 34 ~~ALQaLsNG-~~vPY~aTLR~V~HeG 59 (87)
T 8GLV_6S 34 FRALQVLANG-DEVPYEATLRNVIHDG 59 (87)
T ss_pred HHHHHHHhCC-CCCCcHHheeeeeecC
No 29
>1R71_D Transcriptional repressor protein korB; IncP, plasmid partitioning, protein-DNA complex, heilx-turn-helix motif, transcription factor, ParB homologue, TRANSCRIPTION-DNA COMPLEX; HET: BRU; 2.2A {Escherichia coli} SCOP: a.4.14.1
Probab=27.04 E-value=83 Score=22.23 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred hHHHHHhcCCCccEEEEecchH
Q FD01876805_018 64 RLAIAVKGKAQQIKVILETNVD 85 (107)
Q Consensus 64 RL~~fk~a~~~~I~v~~~~~~~ 85 (107)
|+++++.+|...|++.+....+
T Consensus 1 R~~a~~~l~~~~i~~~v~~~~~ 22 (178)
T 1R71_D 1 RYRGSKWAGKKSIPAFIDNDYN 22 (178)
T ss_dssp ---------------------C
T ss_pred ChHHHHHcCCCeeCEEEeCCCC
No 30
>PF14805.10 ; THDPS_N_2 ; Tetrahydrodipicolinate N-succinyltransferase N-terminal
Probab=26.55 E-value=2.8e+02 Score=17.92 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEE-CCEEEE
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNV-KGQLVV 58 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~-~G~~~s 58 (107)
|++++++|-+| .|||.+. +|.|.+
T Consensus 29 i~~~i~~Ld~G--------~iRvA~k~~g~W~v 53 (67)
T E1SU11_FERBD/3 29 VKSVLAMLDSG--------AARVAEKQDGKWVV 53 (67)
T ss_pred HHHHHHHHHCC--------cceEEEeeCCeEEE
No 31
>6T9K_B Transcription factor SPT20; Coactivator, Transcription, Histone acetyltransferase, Histone deubiquitinase, GENE REGULATION; 3.3A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=26.28 E-value=41 Score=31.38 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred HHHceecc---------hhhhhhcCCCCCCccHHHHHHHHHcCCCCHHHCCCeE---EEEECCEEEE--CCCCh
Q FD01876805_018 4 PKDVNFSQ---------TTINSAFDTPDGKRSVQSVINDVRKGNIKATDFPAIK---VVNVKGQLVV--RDGNS 63 (107)
Q Consensus 4 P~~IrFTQ---------dsIs~~F~~~dG~~si~~t~~~L~~G~~~~~dip~I~---V~~~~G~~~s--lD~NR 63 (107)
|...||.| +..--... + ..+.++++.|..|.|.++-++-++ |-++||.++. .| .|
T Consensus 151 Pan~Rlqqq~~~P~~~qDg~~l~kn--n--~~~K~FLe~I~rg~IP~dLlEvL~d~~V~FYDGCLIVEV~D-HR 219 (604)
T 6T9K_B 151 PANSRLQQQQKQPELTSDGLILTKN--N--ETLKEFLEYVARGRIPDAIMEVLRDCNIQFYEGNLILQVYD-HT 219 (604)
T ss_dssp CC----------------CCCEECS--C--TTHHHHGGGTTTTBCCTTSHHHHHHHTCCCBTTBEEEEEEE-ST
T ss_pred chhhhhhhccCCCccccCCcccCCC--c--HHHHHHHHHHHcCCCCHHHHHHHHHCCCCeeeCcEEEEEEe-cc
No 32
>1Z2I_A malate dehydrogenase; MALATE DEHYDROGENASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics; HET: NAD; 2.2A {Agrobacterium tumefaciens} SCOP: c.122.1.0
Probab=25.97 E-value=1.6e+02 Score=24.52 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhH--HHHHhc
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 71 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL--~~fk~a 71 (107)
+...++.|.+|.+++. +.+.++...+....+|+|+.+ .+...|
T Consensus 58 l~~~~~~l~~g~~~~~--~~~~i~~~~~~~~~vD~~~~~g~~~~~~a 102 (358)
T 1Z2I_A 58 LAHYVTALEGGRLNRR--PQISRVSGFGAVETIDADHAHGARATYAA 102 (358)
T ss_dssp HHHHHHHHHHTSSCSS--CCCEEEECCTTEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCC--CccEEEeCCCcEEEEeCCCCChHHHHHHH
No 33
>PF09248.14 ; DUF1965 ; Domain of unknown function (DUF1965)
Probab=24.15 E-value=85 Score=20.00 Aligned_cols=33 Identities=3% Similarity=-0.115 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChh
Q FD01876805_018 24 KRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSR 64 (107)
Q Consensus 24 ~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRR 64 (107)
+.|+++++++..+|.+....+ ..+..|+.- +||
T Consensus 35 f~s~~~l~~ay~~g~~~~~~~-------~~~~~~s~~-~~r 67 (69)
T Q5B038_EMENI/2 35 YETTEEFRKAYWSPGFVKLKP-------NVDGAWAHT-EQR 67 (69)
T ss_pred eCCHHHHHHHHhCCCCeecCC-------CCCCCcccc-ccC
No 34
>6TB4_F Spt20; Transcriptional co-activator, Histone-acetylation, TRANSCRIPTION; 3.8A {Komagataella phaffii (strain GS115 / ATCC 20864)}
Probab=23.98 E-value=91 Score=28.65 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred HHHHHHHHHcCCCCHHHCCCe---EEEEECCEEEE--CCCChh
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAI---KVVNVKGQLVV--RDGNSR 64 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I---~V~~~~G~~~s--lD~NRR 64 (107)
+.++++.|.+|.+.++-+.-+ .|-++||.+++ .| .|.
T Consensus 108 ~k~fLe~I~~g~IPp~Lle~L~~~~v~FYDGCLIVEV~D-HR~ 149 (517)
T 6TB4_F 108 IKAFLEYVAREEIPPALIEVTKDAGVQLYEGCIILRIYD-HRH 149 (517)
T ss_dssp HHHHHHHHHTTBCCTTSHHHHHHHCSSSSCSSEEEEEEC-CC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHcCCCeeCCEEEEEEEe-ccc
No 35
>4HRS_A Small archaeal modifier protein 2; beta-grasp fold beta-hinge motif, small ubiquitin-like modifier, PROTEIN BINDING; 2.3A {Haloferax volcanii DS2}
Probab=23.85 E-value=2.4e+02 Score=16.50 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred cCCCCCCccHHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECC
Q FD01876805_018 18 FDTPDGKRSVQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRD 60 (107)
Q Consensus 18 F~~~dG~~si~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD 60 (107)
+. +| .++.|+++.|.... +.+ ++..+|.+...|
T Consensus 18 ~~--~~-~t~~~ll~~l~~~~------~~v-~v~~n~~~~~~~ 50 (67)
T 4HRS_A 18 VD--DD-GTYADLVRAVDLSP------HEV-TVLVDGRPVPED 50 (67)
T ss_dssp CC--TT-CBHHHHHHHTTCCG------GGC-CEEETTEEECTT
T ss_pred eC--CC-CcHHHHHHhCCCCc------cce-EEEECCEECCcc
No 36
>PF19702.3 ; DUF6200 ; Family of unknown function (DUF6200)
Probab=21.96 E-value=1.7e+02 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred HHHHHHHHH---cCCCCHHHCCCeEEEEEC
Q FD01876805_018 27 VQSVINDVR---KGNIKATDFPAIKVVNVK 53 (107)
Q Consensus 27 i~~t~~~L~---~G~~~~~dip~I~V~~~~ 53 (107)
|++++++|+ +|.++...+-||-|+...
T Consensus 44 V~~~i~~lk~~l~G~i~~~~lqPVVvvvr~ 73 (79)
T A0A2P1PQV5_9GA 44 VARVLESVRTDLAAEAEGKILVPVVIVYRR 73 (79)
T ss_pred HHHHHHHHHHHhhhhhcccccccEEEEEEe
No 37
>PF18315.5 ; VCH_CASS14 ; Integron cassette protein VCH_CASS1 chain
Probab=20.78 E-value=1.3e+02 Score=21.54 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEE-----EECCCCh
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQL-----VVRDGNS 63 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~-----~slD~NR 63 (107)
|.+.+-.|.-+-+--.+-.+|+|..++|.. ++++|+|
T Consensus 19 V~~I~lal~g~Iiwr~d~~~i~v~~~~G~~an~lW~~i~g~r 60 (97)
T A9GUG2_SORC5/1 19 VNEIALALAGAIIWKKDDEPIKVMVQDGDTKNVLWARLGGKR 60 (97)
T ss_pred hHHHHHHHHhHHHhccCCCCEEEEEECCCcceEEEEEECCEE
No 38
>4H8A_A Ureidoglycolate dehydrogenase; Rossmann Fold, OXIDOREDUCTASE; HET: NAI; 1.64A {Escherichia coli} SCOP: c.122.1.1
Probab=20.73 E-value=2.9e+02 Score=23.14 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHcCCCCHHHCCCeEEEEECCEEEECCCChhH--HHHHhc
Q FD01876805_018 27 VQSVINDVRKGNIKATDFPAIKVVNVKGQLVVRDGNSRL--AIAVKG 71 (107)
Q Consensus 27 i~~t~~~L~~G~~~~~dip~I~V~~~~G~~~slD~NRRL--~~fk~a 71 (107)
|...++.|++|.+++. +.++|+...+....+|||+-+ ++...|
T Consensus 51 l~~y~~~i~~g~~~~~--~~~~i~~~~~~~~~iDg~~~~G~~~~~~a 95 (339)
T 4H8A_A 51 VEYYAERISKGGTNRE--PEFRLEETGPCSAILHADNAAGQVAAKMG 95 (339)
T ss_dssp HHHHHHHHHHTSSCSS--CCCEEEEEETTEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC--CCcEEEeccCcEEEEcCCCccHHHHHHHH