Query FD01873445_00923 RHS repeat family protein
Match_columns 122
No_of_seqs 64 out of 67
Neff 4.32209
Searched_HMMs 86581
Date Tue Feb 27 20:35:47 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7593871.hhr -oa3m ../results/7593871.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6SDK_A Stage 0 sporulation pro 97.3 0.0027 3.1E-08 45.7 7.2 72 1-75 3-82 (199)
2 6KY4_A Sulfiredoxin, chloropla 97.3 0.0038 4.4E-08 42.1 7.1 72 1-75 18-96 (112)
3 7NFU_B Nucleoid occlusion prot 96.9 0.011 1.3E-07 45.3 7.6 72 1-75 27-107 (252)
4 4UMK_B PROBABLE CHROMOSOME-PAR 96.6 0.019 2.2E-07 44.3 7.2 72 1-75 32-111 (240)
5 1XW3_A SULFIREDOXIN; retroredu 96.4 0.068 7.8E-07 35.3 7.6 73 1-75 13-95 (110)
6 PF20188.2 ; DUF6551 ; Family o 96.3 0.028 3.2E-07 43.4 6.2 55 14-72 7-68 (242)
7 7BNR_B ParB family protein; DN 96.3 0.046 5.3E-07 40.0 7.0 72 1-75 3-82 (212)
8 5K5D_B ParB domain protein nuc 96.2 0.028 3.3E-07 46.1 6.0 67 3-75 12-86 (300)
9 6NR6_A Bifunctional transcript 96.0 0.094 1.1E-06 41.5 7.9 73 1-75 7-83 (254)
10 PF02195.22 ; ParBc ; ParB/Sulf 95.9 0.16 1.8E-06 31.2 7.3 67 5-74 1-76 (89)
11 6RYK_A ParB-like nuclease doma 95.7 0.09 1E-06 40.6 6.8 72 1-75 33-112 (229)
12 2HWJ_D Hypothetical protein At 95.7 0.067 7.7E-07 42.9 6.1 70 1-72 8-89 (205)
13 PF08857.15 ; ParBc_2 ; Putativ 95.7 0.054 6.2E-07 41.0 5.2 68 8-77 1-80 (153)
14 7BM8_A Chromosome-partitioning 95.3 0.16 1.9E-06 39.8 6.8 72 1-75 33-115 (257)
15 1VZ0_A Chromosome-partitioning 95.2 0.28 3.2E-06 36.9 7.6 72 1-75 22-101 (230)
16 1VK1_A Conserved hypothetical 94.4 0.47 5.4E-06 37.0 7.3 72 3-76 19-95 (242)
17 5UJE_A SbnI protein; staphylof 94.3 0.53 6.1E-06 36.9 7.5 73 1-75 9-85 (242)
18 1R71_D Transcriptional repress 78.5 3.5 4E-05 30.0 2.3 22 54-75 1-22 (178)
19 6CKA_A Paratox; prophage, natu 56.6 42 0.00048 24.2 3.8 28 21-50 6-33 (68)
20 6IH0_A UDP-3-O-acyl-N-acetylgl 30.0 1.6E+02 0.0019 25.2 4.1 37 55-92 76-112 (279)
21 6J2U_A Tyrosinase co-factor pr 28.7 89 0.001 24.2 2.1 28 32-61 71-105 (118)
22 3AWU_B MelC; TYROSINASE, BINAR 26.5 98 0.0011 24.7 2.1 28 32-61 77-111 (134)
23 7O81_AU EDF1; Frameshift, viru 26.3 1.2E+02 0.0014 22.2 2.5 34 32-68 5-40 (148)
24 PF18762.5 ; Kinase-PolyVal ; S 23.3 1.7E+02 0.0019 23.1 2.8 42 10-51 90-153 (160)
25 6CAX_A UDP-3-O-acyl-N-acetylgl 22.4 2.6E+02 0.003 24.4 4.0 37 55-92 81-117 (304)
26 PF03331.17 ; LpxC ; UDP-3-O-ac 22.2 2.7E+02 0.0031 23.6 3.9 37 55-92 77-113 (271)
27 PF03555.18 ; Flu_C_NS2 ; Influ 22.0 1.1E+02 0.0012 21.5 1.3 12 80-91 45-56 (57)
No 1
>6SDK_A Stage 0 sporulation protein J; ParB, Chromosome segregation, Chromosome organization, DNA BINDING PROTEIN; HET: CDP, MSE; 1.81A {Bacillus subtilis (strain 168)} SCOP: d.268.1.0, a.4.14.0
Probab=97.31 E-value=0.0027 Score=45.65 Aligned_cols=72 Identities=26% Similarity=0.169 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCcccCHHHCcccCCCCCHH-------HHHHHHHcCCCCCCCCCceEEEeCCeEEcee-cHHHHHHHHcCCCeeeeEEeC
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH-------DYAEIMRNGGWDWDRSPLRVIDIDGQLVSYD-NRRLDAALEAGLDKVKVIRID 72 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~-------~y~~~Mk~~gW~~~r~pi~Vv~~DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~ 72 (122)
....|++..|.+........ .+.++|+..|... |+.|...+|.+.-+| |+|+.||+.+|+..|++.+++
T Consensus 3 ~~~~i~~~~i~~~~~~~~~~~~~~~~~~l~~si~~~g~~~---pi~v~~~~~~~~vi~G~~R~~a~~~~~~~~i~~~~~~ 79 (199)
T 6SDK_A 3 TVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQ---PLIVRKSLKGYDIVAGERRFRAAKLAGLDTVPAIVRE 79 (199)
T ss_dssp EEEEEEGGGEECCTTCCCCCCCHHHHHHHHHHHHHHCCCS---CEEEEECSSSEEEEECHHHHHHHHHTTCSEEEEEECC
T ss_pred ceeeccHHHCCCCCCCCCccCCHHHHHHHHHHHHHcCCCC---CEEEEECCCcEEEEechhHHHHHHHcCCCeecEEEec
Q ss_pred CCC
Q FD01873445_009 73 PNA 75 (122)
Q Consensus 73 ~~d 75 (122)
.++
T Consensus 80 ~~~ 82 (199)
T 6SDK_A 80 LSE 82 (199)
T ss_dssp CCH
T ss_pred CCH
No 2
>6KY4_A Sulfiredoxin, chloroplastic/mitochondrial; sulfiredoxin, cysteine, sulfinic acid, peroxiredoxin repair protein, arabidopsis thaliana, antioxidant, oxidoreductase; HET: PO4, ADP; 3.2A {Arabidopsis thaliana}
Probab=97.25 E-value=0.0038 Score=42.06 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCcccCHHHCcccCCC---CCHH---HHHHHHHcCCCCCCCCCceEEEe-CCeEEceecHHHHHHHHcCCCeeeeEEeCC
Q FD01873445_009 1 TGEWVNPKDINFSQRT---ISPH---DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYDNRRLDAALEAGLDKVKVIRIDP 73 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~t---Vs~~---~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~DNrRL~AAr~Agi~~Vp~~~~~~ 73 (122)
...++++..|.+.... .+.. .++++|+..|+.. |+.|... +.-.+.--++|+.||+.+|+..|++.++..
T Consensus 18 ~~~~i~~~~i~~~~~~~~~~~~~~~~~l~~s~~~~g~~~---pi~v~~~~~~~~ii~G~~R~~aa~~~~~~~i~~~v~~~ 94 (112)
T 6KY4_A 18 MIVELPLEKIRRPLMRTRSNDQNKVKELMDSIRQIGLQV---PIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKG 94 (112)
T ss_dssp CEEEEEGGGEECGGGGGCCCCHHHHHHHHHHHHHHCCCS---CEEEEEETTEEECCSCHHHHHHHHHTTCSEEEEEEEEC
T ss_pred eEEEEEHHHccCcccCCCCCCHHHHHHHHHHHHHcCCCC---CeEEEEECCEEEEEcCchHHHHHHHhCCCeeeEEEEeC
Q ss_pred CC
Q FD01873445_009 74 NA 75 (122)
Q Consensus 74 ~d 75 (122)
++
T Consensus 95 ~~ 96 (112)
T 6KY4_A 95 TK 96 (112)
T ss_dssp CH
T ss_pred CH
No 3
>7NFU_B Nucleoid occlusion protein; CTP switch, chromosome segregation, protein-DNA recognition, peripheral membrane protein, DNA BINDING PROTEIN; HET: SO4; 2.5A {Geobacillus thermoleovorans CCB_US3_UF5}
Probab=96.90 E-value=0.011 Score=45.28 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCcccCHHHCcccCCCC----CHH---HHHHHHHcCCCCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeeeEEe
Q FD01873445_009 1 TGEWVNPKDINFSQRTI----SPH---DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKVIRI 71 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tV----s~~---~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~ 71 (122)
....|++..|....... +.. ++.++++..|+.. |+.|... +|++.-+| |+|+.|++.+|+..|++.++
T Consensus 27 ~~~~i~~~~i~~~~~~~r~~~~~~~~~~l~~si~~~g~~~---Pi~v~~~~~~~y~vidG~~R~~a~~~~~~~~i~~~v~ 103 (252)
T 7NFU_B 27 EVRHIPVKSIIPNRFQPRTMFDEEKIDELALTIRTHGIIQ---PIVVRECGNGRFEIIAGERRWRAVQKLGWTEIPAIIK 103 (252)
T ss_dssp CCEEEEGGGEECCTTSCCCCCCHHHHHHHHHHHHHHCCSS---CEEEEEETTTEEEEEECHHHHHHHHHTTCSEEEEEEC
T ss_pred cceeCCHHHcCCCCCCCcccCCHHHHHHHHHHHHHcCCCC---CEEEEEcCCCcEEEecChhHHHHHHHhCCCcCCEEEE
Q ss_pred CCCC
Q FD01873445_009 72 DPNA 75 (122)
Q Consensus 72 ~~~d 75 (122)
+.++
T Consensus 104 ~~~~ 107 (252)
T 7NFU_B 104 NLND 107 (252)
T ss_dssp CCCH
T ss_pred CCCH
No 4
>4UMK_B PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB; DNA BINDING PROTEIN-DNA COMPLEX; HET: SO4; 3.096A {HELICOBACTER PYLORI}
Probab=96.63 E-value=0.019 Score=44.34 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCcccCHHHCcccCCCCCHH-------HHHHHHHcCCCCCCCCCceEEEeCCeEEcee-cHHHHHHHHcCCCeeeeEEeC
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH-------DYAEIMRNGGWDWDRSPLRVIDIDGQLVSYD-NRRLDAALEAGLDKVKVIRID 72 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~-------~y~~~Mk~~gW~~~r~pi~Vv~~DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~ 72 (122)
...+|++..|.......... ++.++|+..|... |+.|...+|.+.-+| ++|+.|++.+|++.|++.+++
T Consensus 32 ~~~~i~l~~i~~~~~~~r~~~~~~~~~~l~~si~~~G~~~---Pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~~v~~ 108 (240)
T 4UMK_B 32 RVVELGIDEVMPNPYQPRKVFSEDSLEELAQSIKEHGLLQ---PVLVVSENGRYHLIAGERRLRASKLAKMPTIKAIVVD 108 (240)
T ss_dssp -------------CCCSSCCCCCCHHHHHSSTTTTTTCCC---CCCCEEEETTEEEESCGGGHHHHHTTSSSCCCCCCSE
T ss_pred ceEEecHHHcCCCCCCcccCCCHHHHHHHHHHHHHcCCCc---CEEEEeeCCEEEEEeChhHHHHHHHcCCCcceEEEEe
Q ss_pred CCC
Q FD01873445_009 73 PNA 75 (122)
Q Consensus 73 ~~d 75 (122)
.++
T Consensus 109 ~~~ 111 (240)
T 4UMK_B 109 IEQ 111 (240)
T ss_dssp EEH
T ss_pred CCH
No 5
>1XW3_A SULFIREDOXIN; retroreduction, sulfinic acid, peroxiredoxin, ATP, OXIDOREDUCTASE; 1.65A {Homo sapiens} SCOP: l.1.1.1, d.268.1.4
Probab=96.36 E-value=0.068 Score=35.31 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCcccCHHHCcccCCC-CCHH---HHHHHHHcCCCCCCCCCceEEEe-CC-----eEEceecHHHHHHHHcCCCeeeeEE
Q FD01873445_009 1 TGEWVNPKDINFSQRT-ISPH---DYAEIMRNGGWDWDRSPLRVIDI-DG-----QLVSYDNRRLDAALEAGLDKVKVIR 70 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~t-Vs~~---~y~~~Mk~~gW~~~r~pi~Vv~~-DG-----qlvS~DNrRL~AAr~Agi~~Vp~~~ 70 (122)
...++....|.+++.. +... .+.++|+..|-.. .|+.|... +. -.+---++|+.||+.+|+..|++.+
T Consensus 13 ~~~~i~~~~i~~~~~~~~~~~~~~~l~~si~~~g~~~--~pi~v~~~~~~~~~~~~~ii~G~~R~~a~~~~~~~~i~~~~ 90 (110)
T 1XW3_A 13 AVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSV--PPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKL 90 (110)
T ss_dssp EEEEEEGGGEECCSCCCCCHHHHHHHHHHHHHCGGGS--CCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEE
T ss_pred ceEEEeHHHccCCCCCCCCHHHHHHHHHHHHhCCCCC--CCeEEEEEeCCCCCceEEEEcchHHHHHHHHhccCCCCeEE
Q ss_pred eCCCC
Q FD01873445_009 71 IDPNA 75 (122)
Q Consensus 71 ~~~~d 75 (122)
++.++
T Consensus 91 ~~~~~ 95 (110)
T 1XW3_A 91 VQSTL 95 (110)
T ss_dssp EEECH
T ss_pred EeCCH
No 6
>PF20188.2 ; DUF6551 ; Family of unknown function (DUF6551)
Probab=96.28 E-value=0.028 Score=43.44 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCCCHH---HHHHHHHcCCCCCCCCCceEEEeCCeEEcee-cHHHHHHHHcCC---CeeeeEEeC
Q FD01873445_009 14 QRTISPH---DYAEIMRNGGWDWDRSPLRVIDIDGQLVSYD-NRRLDAALEAGL---DKVKVIRID 72 (122)
Q Consensus 14 Q~tVs~~---~y~~~Mk~~gW~~~r~pi~Vv~~DGqlvS~D-NrRL~AAr~Agi---~~Vp~~~~~ 72 (122)
|+.++.. +++++|..+ .. .||.|...||++.-+| ..|+.||+.+|. ..|++.++.
T Consensus 7 qR~~~~~~v~~l~~~~~~~--~~--~pi~v~~~~g~~~viDGqhR~~a~~~~~~~~~~~v~~~i~~ 68 (242)
T D4K186_9FIRM/3 7 QRGIQRKRVELIARDFNEY--TA--NEPKISFRNGRYYVTDGQHTIEARILRNGGKDLPILCKVYT 68 (242)
T ss_pred ccccCHHHHHHHHHhccHh--hC--CCCEEEEeCCeEEEeCChhHHHHHHHhcCCCCccEEEEEEc
No 7
>7BNR_B ParB family protein; DNA-binding protein, CTP, Myxococcus, DNA-segregation, DNA BINDING PROTEIN; HET: UFQ, GOL; 1.7A {Myxococcus xanthus (strain DK 1622)}
Probab=96.28 E-value=0.046 Score=40.01 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCcccCHHHCcccCCCCCHH-------HHHHHHHcCCCCCCCCCceEEEe-CCeEEceecHHHHHHHHcCCCeeeeEEeC
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH-------DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYDNRRLDAALEAGLDKVKVIRID 72 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~-------~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~DNrRL~AAr~Agi~~Vp~~~~~ 72 (122)
....|+++.|...-...-.. ++.++|+..|..- |+.|... ++-++---++|+.|++.+|...|++.+++
T Consensus 3 ~~~~v~~~~i~~~~~~~r~~~~~~~~~~l~~si~~~g~~~---pi~v~~~~~~~~iidG~~R~~a~~~~~~~~i~~~i~~ 79 (212)
T 7BNR_B 3 GVLKLPIESIHRDKDAPRTYFDEEKLKELSESIKAQGVLQ---PILVRKDGDGYRIIAGERRWRASQAAGLKEVPAIVRD 79 (212)
T ss_dssp -CCEEEGGGEECCTTCSCCCCCHHHHHHHHHHHHHHCCSS---CEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECC
T ss_pred CceeccHHHcCCCCCCCcccCCHHHHHHHHHHHHHhCCcc---CEEEEEcCCceEEeecchHHHHHHHcCCCccCEEEEC
Q ss_pred CCC
Q FD01873445_009 73 PNA 75 (122)
Q Consensus 73 ~~d 75 (122)
.++
T Consensus 80 ~~~ 82 (212)
T 7BNR_B 80 VTE 82 (212)
T ss_dssp CCH
T ss_pred CCH
No 8
>5K5D_B ParB domain protein nuclease; ParB-N, pnob8, partition, HYDROLASE; HET: CIT, MSE; 2.45A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.028 Score=46.14 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred cccCHHHCcccCCCCC---HH----HHHHHHHcCCCCCCCCCceEEEeCCeEEcee-cHHHHHHHHcCCCeeeeEEeCCC
Q FD01873445_009 3 EWVNPKDINFSQRTIS---PH----DYAEIMRNGGWDWDRSPLRVIDIDGQLVSYD-NRRLDAALEAGLDKVKVIRIDPN 74 (122)
Q Consensus 3 ~~vdP~~InFSQ~tVs---~~----~y~~~Mk~~gW~~~r~pi~Vv~~DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~~~ 74 (122)
++|+...|.++...-. .. +++++|+..|..- ||.| +|.+.-+| .+|+.||+.+|+..|++.+.+..
T Consensus 12 ~~i~i~~i~~~~~~~~~~~~~~~~~~L~~sI~~~G~~~---Pi~v---~~~~~iidG~~R~~A~~~lg~~~i~~~v~~~~ 85 (300)
T 5K5D_B 12 EVVSIEKLKEDDEFKTMVPSNNSREDLEKSLREKSQIF---PLIA---DRNYVLIDGYTRLDIMKKLGFKEVKILKYDFD 85 (300)
T ss_dssp EEEEGGGCEECHHHHHSSCCCTTHHHHHHHHHHHCSCS---CEEE---CTTCEEEECHHHHHHHHHTTCCEEEEEEESSC
T ss_pred EEeCHHHCCCChhHhccCCChhhHHHHHHHHHHhcCCC---CEEE---CCCCEEeCCHHHHHHHHHcCCCEeeEEEECCC
Q ss_pred C
Q FD01873445_009 75 A 75 (122)
Q Consensus 75 d 75 (122)
+
T Consensus 86 ~ 86 (300)
T 5K5D_B 86 S 86 (300)
T ss_dssp T
T ss_pred C
No 9
>6NR6_A Bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI; free serine kinase, siderophore, ParB/Srx family, staphyloferrin B, BIOSYNTHETIC PROTEIN; HET: ADP; 1.9A {Staphylococcus pseudintermedius}
Probab=95.97 E-value=0.094 Score=41.55 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCcccCHHHCcccCCCCCHH--HHHHHHHcCCCCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeeeEEeCCCC
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH--DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKVIRIDPNA 75 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~--~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~~~d 75 (122)
..+.+....|...+.+-... ++.++|+..|+.. .|+.|... ++++.-.| ..|+.||+..|...|++.+++.++
T Consensus 7 ~i~~i~~~~i~~he~~~~~~~~~l~~~i~~~g~~~--~Pii~~~~~~~~~~i~DGhhR~~a~~~~~~~~v~~~~~~~~~ 83 (254)
T 6NR6_A 7 TLQLIPVDKIDLHEAFEPSRLEKTKESIAKEQHLR--HPVLVVKTLFGRYMVIDGVHRFMSLKALGCEVIPVQVIQRTQ 83 (254)
T ss_dssp HEEEEEGGGEECCBCCCHHHHHHHHHHHHHHCEES--SCEEEEECGGGCEEEEECHHHHHHHHHTTCSEEEEEECCGGG
T ss_pred ccEEeeHHHccCCCccCHHHHHHHHHHHHHcCCcc--CCeEEEEeCCCeEEEccCchHHHHHHHcCCCEEcEEEECccc
No 10
>PF02195.22 ; ParBc ; ParB/Sulfiredoxin domain
Probab=95.93 E-value=0.16 Score=31.17 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cCHHHCcccCCCCCHH-------HHHHHHHcCCCCCCCCCceEEEe--CCeEEceecHHHHHHHHcCCCeeeeEEeCCC
Q FD01873445_009 5 VNPKDINFSQRTISPH-------DYAEIMRNGGWDWDRSPLRVIDI--DGQLVSYDNRRLDAALEAGLDKVKVIRIDPN 74 (122)
Q Consensus 5 vdP~~InFSQ~tVs~~-------~y~~~Mk~~gW~~~r~pi~Vv~~--DGqlvS~DNrRL~AAr~Agi~~Vp~~~~~~~ 74 (122)
++...|...+...... .++++|+..|+.- |+.|... +.-.+...++|+.||+.+|+..|++.+++..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---pi~~~~~~~~~~~v~~G~~r~~~~~~~~~~~i~~~~~~~~ 76 (89)
T PARB_PSEPK/39- 1 LPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQ---PIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAMVREVP 76 (89)
T ss_pred CCHHHccCCCCCCcccCCHHHHHHHHHHHHHcCCcc---CEEEEEcCCCCEEEeeChhHHHHHHHhCCCccCEEEecCC
No 11
>6RYK_A ParB-like nuclease domain protein; ParABS, cytoskeleton, bactofilin, CTP, CELL CYCLE; HET: CTP; 1.7A {Myxococcus xanthus DK 1622}
Probab=95.73 E-value=0.09 Score=40.57 Aligned_cols=72 Identities=17% Similarity=0.054 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCcccCHHHCcc-cCCCCCHH----HHHHHHHcCCCCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeeeEEe-C
Q FD01873445_009 1 TGEWVNPKDINF-SQRTISPH----DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKVIRI-D 72 (122)
Q Consensus 1 ~~~~vdP~~InF-SQ~tVs~~----~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~-~ 72 (122)
...+|+.+.|.. +....... +++++++..|... |+.|... +|.+.-+| ++|+.||+.+|...|++.++ +
T Consensus 33 ~~~~i~l~~i~~~~~~~~r~~~~~~~l~~si~~~g~~~---pi~v~~~~~~~y~lv~G~~R~~a~~~~~~~~i~~~v~~~ 109 (229)
T 6RYK_A 33 TTVLLPLEKLQDESAFKLRPEGDVSGLATDIARLGQLF---PVDVRPAGEDRYQLVCGFRRVAALRFLKRDAVQARIHLR 109 (229)
T ss_dssp EEEEEEGGGBCSCCTTCCSCCCCCHHHHHHHHHHCCCS---CEEEEECSTTCEEEEECHHHHHHHHTTTCSEEEEEEESS
T ss_pred eEEEEeHHHcCCcccCCCCCccchHHHHHHHHHhCCCC---CeEEEECCCCCEEEEeCcHHHHHHHHcCCCeeeEEEECC
Q ss_pred CCC
Q FD01873445_009 73 PNA 75 (122)
Q Consensus 73 ~~d 75 (122)
.++
T Consensus 110 ~~~ 112 (229)
T 6RYK_A 110 LSD 112 (229)
T ss_dssp CCH
T ss_pred CCH
No 12
>2HWJ_D Hypothetical protein Atu1540; Agrobacterium tumefaciens, Hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; HET: MSE; 2.61A {Agrobacterium tumefaciens str. C58} SCOP: d.268.1.3
Probab=95.68 E-value=0.067 Score=42.85 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCcccCHHHCcccCCCCCHHHHHHHHHcCC----------CCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeee
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPHDYAEIMRNGG----------WDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKV 68 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~~y~~~Mk~~g----------W~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~ 68 (122)
...+|+..+|+-+|.+|+..+....++.-. ... .|+-||.- +|++.-+| ..|+.||..+|+..|+|
T Consensus 8 ~~~~v~i~~L~PTQ~~vg~~~v~~~~~~~~~~~~~~~~~~l~~--~~ipvvigp~g~~yliDGHHr~~a~~~~G~~~v~v 85 (205)
T 2HWJ_D 8 RLSRIAIDKLRPTQIAVGFREVELKRKEWRETRKKDGDDFLGN--HIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVLT 85 (205)
T ss_dssp BEEEEETTTSBCSBSEECHHHHHHHHHHHTTCC------CTTC--CEEEEEECSTTCEEECSCHHHHHHHHTTTCCEEEE
T ss_pred ceEEeeHHHcCCCchhcCHHHHHHHHHHHHHhchhhccccccC--ceeeEEECCCCCEEEeCChHHHHHHHHhCCCEEEE
Q ss_pred EEeC
Q FD01873445_009 69 IRID 72 (122)
Q Consensus 69 ~~~~ 72 (122)
.+++
T Consensus 86 ~v~~ 89 (205)
T 2HWJ_D 86 SEVA 89 (205)
T ss_dssp EEEE
T ss_pred EEec
No 13
>PF08857.15 ; ParBc_2 ; Putative ParB-like nuclease
Probab=95.66 E-value=0.054 Score=40.97 Aligned_cols=68 Identities=12% Similarity=-0.046 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHCcccCCCCCHHHHHHHHHcCC----------CCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeeeEEeCCCC
Q FD01873445_009 8 KDINFSQRTISPHDYAEIMRNGG----------WDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKVIRIDPNA 75 (122)
Q Consensus 8 ~~InFSQ~tVs~~~y~~~Mk~~g----------W~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~~~d 75 (122)
.+|+=||.+|+..+..+.|+.-. ... .|+-||.. ||++.-+| ..|+.||.++|++.|++.+++...
T Consensus 1 ~~L~PtQ~~ig~~~V~~K~~~~~~~~~~~~~~~~~~--~~ipvv~~~~g~~~liDGHHr~~a~~~~g~~~v~v~v~~~~~ 78 (153)
T S5Y864_PARAH/7 1 IALRPTQMTVGMKEVQRKRHDWREDSQSKEVNFLGH--HLLPCVLGPKKRYHLIDNHHLALALHLEGVTAVLVNVVADLS 78 (153)
T ss_pred CCCCCChHHccHHHHHHHHHHHHhcCHHHHHHHhhh--CCcCEEECCCCcEEEECCHHHHHHHHHccCceeEEEEeccCC
Q ss_pred CC
Q FD01873445_009 76 PH 77 (122)
Q Consensus 76 ~~ 77 (122)
.+
T Consensus 79 ~~ 80 (153)
T S5Y864_PARAH/7 79 GM 80 (153)
T ss_pred CC
No 14
>7BM8_A Chromosome-partitioning protein ParB; chromosome segregation, CTP, molecular gates, protein-DNA recognition, DNA BINDING PROTEIN; HET: CTP; 2.73A {Caulobacter vibrioides (strain NA1000 / CB15N)} SCOP: d.268.1.0, a.4.14.0
Probab=95.26 E-value=0.16 Score=39.76 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCcccCHHHCcccCCCCCHH-------HHHHHHHcCCCCCCCCCceEEEe-C--CeEEcee-cHHHHHHHHcCCCeeeeE
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH-------DYAEIMRNGGWDWDRSPLRVIDI-D--GQLVSYD-NRRLDAALEAGLDKVKVI 69 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~-------~y~~~Mk~~gW~~~r~pi~Vv~~-D--GqlvS~D-NrRL~AAr~Agi~~Vp~~ 69 (122)
....|+...|.......-.. +++++++..|..- ||.|... + |.+.-+| ++|+.||+.+|+..|++.
T Consensus 33 ~~~~i~l~~i~~~~~~~r~~~~~~~~~~L~~si~~~G~~~---Pi~v~~~~~~~~~y~vidG~~R~~a~~~l~~~~i~~~ 109 (257)
T 7BM8_A 33 GSREAPIEILQRNPDQPRRTFREEDLEDLSNSIREKGVLQ---PILVRPSPDTAGEYQIVAGERRWRAAQRAGLKTVPIM 109 (257)
T ss_dssp CCEEEEGGGEEECTTCSCCCCCHHHHHHHHHHHHHHCCCS---CEEEEECSSSTTCEEEEECHHHHHHHHHTTCSEEEEE
T ss_pred CcEEEeHHHccCCCCCCCccCCHHHHHHHHHHHHHhCCCC---CeEEEECCCCCCcEEEeeChhHHHHHHHcCCCeecEE
Q ss_pred EeCCCC
Q FD01873445_009 70 RIDPNA 75 (122)
Q Consensus 70 ~~~~~d 75 (122)
+...++
T Consensus 110 v~~~~~ 115 (257)
T 7BM8_A 110 VRELDD 115 (257)
T ss_dssp ECCCCH
T ss_pred EEeCCH
No 15
>1VZ0_A Chromosome-partitioning protein Spo0J; NUCLEAR PROTEIN, CHROMOSOME SEGREGATION, DNA-BINDING, HELIX-TURN-HELIX; HET: CO; 2.3A {Thermus thermophilus HB27} SCOP: a.4.14.1, d.268.1.1
Probab=95.19 E-value=0.28 Score=36.93 Aligned_cols=72 Identities=28% Similarity=0.282 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCcccCHHHCcccCCC----CCHH---HHHHHHHcCCCCCCCCCceEEEe-CCeEEceecHHHHHHHHcCCCeeeeEEeC
Q FD01873445_009 1 TGEWVNPKDINFSQRT----ISPH---DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYDNRRLDAALEAGLDKVKVIRID 72 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~t----Vs~~---~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~DNrRL~AAr~Agi~~Vp~~~~~ 72 (122)
....|++.+|...-.. .+.. ++.++|+..|..- |+.|... ++-.+---++|+.|++.+|++.|++.+.+
T Consensus 22 ~~~~i~i~~i~~~~~~~r~~~~~~~~~~l~~si~~~g~~~---pi~v~~~~~~~~i~dG~~R~~a~~~~~~~~i~~~v~~ 98 (230)
T 1VZ0_A 22 GVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQ---PLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVVKD 98 (230)
T ss_dssp -CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSS---CEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECC
T ss_pred CeeEccHHHCCCCCCCCcccCCHHHHHHHHHHHHHhCCCC---CEEEEEcCCeEEEEeChHHHHHHHHcCCCeeCEEEec
Q ss_pred CCC
Q FD01873445_009 73 PNA 75 (122)
Q Consensus 73 ~~d 75 (122)
.++
T Consensus 99 ~~~ 101 (230)
T 1VZ0_A 99 LTD 101 (230)
T ss_dssp CCH
T ss_pred CCH
No 16
>1VK1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, Pyrococcus furiosus, conserved hypothetical protein, structural genomics, PSI, Protein Structure Initiative, Southeast; HET: MLY; 1.2A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=94.41 E-value=0.47 Score=37.02 Aligned_cols=72 Identities=14% Similarity=0.306 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred cccCHHHCcccCCCCCHH--HHHHHHHcCCCCCCCCCceEEEeC--Ce-EEceecHHHHHHHHcCCCeeeeEEeCCCCC
Q FD01873445_009 3 EWVNPKDINFSQRTISPH--DYAEIMRNGGWDWDRSPLRVIDID--GQ-LVSYDNRRLDAALEAGLDKVKVIRIDPNAP 76 (122)
Q Consensus 3 ~~vdP~~InFSQ~tVs~~--~y~~~Mk~~gW~~~r~pi~Vv~~D--Gq-lvS~DNrRL~AAr~Agi~~Vp~~~~~~~d~ 76 (122)
+.++.+.|..-...-... +++++|+..|... .|+.|.... +. ++--.+.|+.||+.+|...|++.+++.++.
T Consensus 19 ~~i~~~~i~~~e~~~~~~~~~l~~~i~~~G~~~--~Pi~v~~~~~~~~~~i~dG~hR~~a~~~~~~~~i~~~~~~~~~~ 95 (242)
T 1VK1_A 19 VFIELDKMKPHEQLVQRELEDFIESVTGSGIFW--KPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDE 95 (242)
T ss_dssp EEEEGGGEECSBCCCHHHHHHHHHHHHHHCEEC--SCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECTTST
T ss_pred EEEeHHHCCCCcccCHHHHHHHHHHHHhcCCcc--CCEEEEeCCCCCeEEEcCChHHHHHHHHhCCCeecEEEEeCCCc
No 17
>5UJE_A SbnI protein; staphyloferrin B, heme, regulator, siderophore, GENE REGULATION; HET: GOL, MSE; 2.5A {Staphylococcus aureus}
Probab=94.35 E-value=0.53 Score=36.95 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCcccCHHHCcccCCCCCHH--HHHHHHHcCCCCCCCCCceEEEe-CCeEEcee-cHHHHHHHHcCCCeeeeEEeCCCC
Q FD01873445_009 1 TGEWVNPKDINFSQRTISPH--DYAEIMRNGGWDWDRSPLRVIDI-DGQLVSYD-NRRLDAALEAGLDKVKVIRIDPNA 75 (122)
Q Consensus 1 ~~~~vdP~~InFSQ~tVs~~--~y~~~Mk~~gW~~~r~pi~Vv~~-DGqlvS~D-NrRL~AAr~Agi~~Vp~~~~~~~d 75 (122)
....++.+.|...+.+-... ++.++|+..|..- .|+.|... ++++.-.| +.|+.||+..|...|++.+++.+.
T Consensus 9 ~~~~i~~~~i~~~e~~~~~~~~~l~~~i~~~G~~~--~Pi~v~~~~~~~~~i~dG~~R~~a~~~~~~~~i~~~~~~~~~ 85 (242)
T 5UJE_A 9 HLKLVPVDKIDLHETFEPLRLEKTKSSIEADDFIR--HPILVTAMQHGRYMVIDGVHRYTSLKALGCKKVPVQEIHETQ 85 (242)
T ss_dssp TEEEEEGGGEECSBCCCHHHHHHHHHHHHHHTEES--SCEEEEECSTTCEEEEECHHHHHHHHHTTCSEEEEEEECTTT
T ss_pred CeEEEeHHHCCCCCCCCHHHHHHHHHHHHHcCCCC--CCeEEEEccCCeEEEcCCHHHHHHHHHcCCCccCEEEEcccc
No 18
>1R71_D Transcriptional repressor protein korB; IncP, plasmid partitioning, protein-DNA complex, heilx-turn-helix motif, transcription factor, ParB homologue, TRANSCRIPTION-DNA COMPLEX; HET: BRU; 2.2A {Escherichia coli} SCOP: a.4.14.1
Probab=78.54 E-value=3.5 Score=29.98 Aligned_cols=22 Identities=14% Similarity=0.068 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHcCCCeeeeEEeCCCC
Q FD01873445_009 54 RLDAALEAGLDKVKVIRIDPNA 75 (122)
Q Consensus 54 RL~AAr~Agi~~Vp~~~~~~~d 75 (122)
|++||+.+|++.|++.++...+
T Consensus 1 R~~a~~~l~~~~i~~~v~~~~~ 22 (178)
T 1R71_D 1 RYRGSKWAGKKSIPAFIDNDYN 22 (178)
T ss_dssp ---------------------C
T ss_pred ChHHHHHcCCCeeCEEEeCCCC
No 19
>6CKA_A Paratox; prophage, natural competence, Streptococcus, protein binding, VIRAL PROTEIN; HET: MSE; 1.559A {Streptococcus pyogenes serotype M3}
Probab=56.65 E-value=42 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred HHHHHHHcCCCCCCCCCceEEEeCCeEEce
Q FD01873445_009 21 DYAEIMRNGGWDWDRSPLRVIDIDGQLVSY 50 (122)
Q Consensus 21 ~y~~~Mk~~gW~~~r~pi~Vv~~DGqlvS~ 50 (122)
++.+++..|--.+ +-+.||+.|||+.-|
T Consensus 6 efkeAId~G~I~g--dtV~IVRknGkIfDy 33 (68)
T 6CKA_A 6 EFKEAIDKGYILG--DTVAIVRKNGKIFDY 33 (68)
T ss_dssp HHHHHHHTTSSCS--SEEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCCC--CeEEEEEeCCEEEEE
No 20
>6IH0_A UDP-3-O-acyl-N-acetylglucosamine deacetylase; Inhibitor, Complex, ANTIBIOTIC, HYDROLASE-HYDROLASE INHIBITOR complex; HET: A5U, A5F; 1.21A {Aquifex aeolicus (strain VF5)} SCOP: d.14.1.7
Probab=30.02 E-value=1.6e+02 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHcCCCeeeeEEeCCCCCCCCCCCCCcHHHHHHH
Q FD01873445_009 55 LDAALEAGLDKVKVIRIDPNAPHPDSSTGKTWLQKFRE 92 (122)
Q Consensus 55 L~AAr~Agi~~Vp~~~~~~~d~~P~~~~~~TWgea~~~ 92 (122)
|.|...+||+.+.|++..++-|+.+ ++...|-++|+.
T Consensus 76 lAAl~~~gIdn~~Ie~~g~E~PilD-GSa~~~~~~l~~ 112 (279)
T 6IH0_A 76 LSVLHLLEITNVTIEVIGNEIPILD-GSGWEFYEAIRK 112 (279)
T ss_dssp HHHHHHHTCCSEEEEEESSBCCCTT-SSSHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEEcCCCCCCCC-CchHHHHHHHHH
No 21
>6J2U_A Tyrosinase co-factor protein; Citrate synthase, Metallosphaera sedula, OXIDOREDUCTASE; 1.3A {Streptomyces avermitilis} SCOP: d.386.1.0
Probab=28.70 E-value=89 Score=24.23 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CCCCCCceEEEe-CCeEEceec------HHHHHHHHc
Q FD01873445_009 32 DWDRSPLRVIDI-DGQLVSYDN------RRLDAALEA 61 (122)
Q Consensus 32 ~~~r~pi~Vv~~-DGqlvS~DN------rRL~AAr~A 61 (122)
|+ .||+|++. ||.++|.=| .=+.+||.|
T Consensus 71 DG--r~L~vmr~~dG~y~S~v~hY~~f~sl~~~ARaa 105 (118)
T 6J2U_A 71 DG--MELHVMQNVDGSWISVVSHYDPVATPRAAARAA 105 (118)
T ss_dssp TT--EEECEEECTTSCEEETTEEEEEESSHHHHHHHH
T ss_pred CC--EEcEEEEcCCCCEEECeeCCeecCCHHHHHHHH
No 22
>3AWU_B MelC; TYROSINASE, BINARY COMPLEX, TYPE-3 COPPER, COPPER TRANSFER, OXIDOREDUCTASE-METAL TRANSPORT COMPLEX; HET: NO3; 1.16A {Streptomyces castaneoglobisporus} SCOP: d.386.1.1
Probab=26.51 E-value=98 Score=24.73 Aligned_cols=28 Identities=32% Similarity=0.255 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred CCCCCCceEEEe-CCeEEceec------HHHHHHHHc
Q FD01873445_009 32 DWDRSPLRVIDI-DGQLVSYDN------RRLDAALEA 61 (122)
Q Consensus 32 ~~~r~pi~Vv~~-DGqlvS~DN------rRL~AAr~A 61 (122)
|+ .||.||+. ||+++|.=| .=+.+||.|
T Consensus 77 DG--r~Lhvmr~adG~Y~S~v~hY~~~~sl~~~ARaA 111 (134)
T 3AWU_B 77 DG--VQLHVMRNADGSWISVVSHYDPVPTPRAAARAA 111 (134)
T ss_dssp TT--EEECEEECTTSCEEETTEEEEEESSHHHHHHHH
T ss_pred CC--EEcEEEECCCCCEEECeeCCeecCCHHHHHHHH
No 23
>7O81_AU EDF1; Frameshift, virus, pseudoknot, RIBOSOME; HET: NMM, SAC, 6MZ, AME, 5MC, B8N, SPD, OMU, MA6, GTP, MLZ, HIC, V5N, 1MA, 4AC, PSU, UR3, MG, G7M, UY1, OMC, OMG, A2M, 5MU, UNX, M3L; 3.1A {Oryctolagus cuniculus}
Probab=26.30 E-value=1.2e+02 Score=22.17 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCCCCCceEEEe--CCeEEceecHHHHHHHHcCCCeeee
Q FD01873445_009 32 DWDRSPLRVIDI--DGQLVSYDNRRLDAALEAGLDKVKV 68 (122)
Q Consensus 32 ~~~r~pi~Vv~~--DGqlvS~DNrRL~AAr~Agi~~Vp~ 68 (122)
+| +|+.|+.. -..-..-....+.+|+.+|+. |+.
T Consensus 5 ~w--~~~~~~~~~~~~~~~~~~~~~~~~a~r~g~~-~~t 40 (148)
T 7O81_AU 5 DW--DTVTVLRKKGPTAAQAKSKQAILAAQRRGDD-VET 40 (148)
T ss_pred CC--ccceecccCCCCchhhCCHHHHHHHHHhCCc-cee
No 24
>PF18762.5 ; Kinase-PolyVal ; Serine/Threonine/Tyrosine Kinase found in polyvalent proteins
Probab=23.25 E-value=1.7e+02 Score=23.06 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CcccCCCCCHH------HHHHHHHcCCCCCCC----------------CCceEEEeCCeEEcee
Q FD01873445_009 10 INFSQRTISPH------DYAEIMRNGGWDWDR----------------SPLRVIDIDGQLVSYD 51 (122)
Q Consensus 10 InFSQ~tVs~~------~y~~~Mk~~gW~~~r----------------~pi~Vv~~DGqlvS~D 51 (122)
|-.||..|.+. ++.+.|.+.||.-.. .|=+|+..+|.|+-+|
T Consensus 90 iv~sQp~i~g~~~~t~~eI~~~m~~~Gf~~~~~~~~~~~~~~~~v~D~~~~Nv~~~~g~l~pID 153 (160)
T A0A095SVY7_9FL 90 ALVEQPFVKANQPTDLSKVKEFMIANGFENTRNHDYYHSELGIILEDLHDENVLTQDGILYFID 153 (160)
T ss_pred EEEEcCcccCCCCCCHHHHHHHHHHCCCEECCCCCeeeccccEEEEeCChhcEEeeCCeEEEEE
No 25
>6CAX_A UDP-3-O-acyl-N-acetylglucosamine deacetylase; SSGCID, LpxC, lipid A biosynthesis, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, HYDROLASE, hydrolase-hydrolase; HET: EUY, EDO; 1.25A {Pseudomonas aeruginosa}
Probab=22.39 E-value=2.6e+02 Score=24.39 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHcCCCeeeeEEeCCCCCCCCCCCCCcHHHHHHH
Q FD01873445_009 55 LDAALEAGLDKVKVIRIDPNAPHPDSSTGKTWLQKFRE 92 (122)
Q Consensus 55 L~AAr~Agi~~Vp~~~~~~~d~~P~~~~~~TWgea~~~ 92 (122)
|.|...+||+.+.|++..++-|+-+ ++...|-++|+.
T Consensus 81 lAAL~~~gIdn~~Iev~g~E~PilD-GSa~~~~~~l~~ 117 (304)
T 6CAX_A 81 LSAMAGLGIDNAYVELSASEVPIMD-GSAGPFVFLIQS 117 (304)
T ss_dssp HHHHHHHTCCCEEEEESSSBCBCTT-SSSHHHHHHHHH
T ss_pred HHHHHccCCCcEEEEeCCCCCCCCC-CCcHHHHHHHHH
No 26
>PF03331.17 ; LpxC ; UDP-3-O-acyl N-acetylglycosamine deacetylase
Probab=22.19 E-value=2.7e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHcCCCeeeeEEeCCCCCCCCCCCCCcHHHHHHH
Q FD01873445_009 55 LDAALEAGLDKVKVIRIDPNAPHPDSSTGKTWLQKFRE 92 (122)
Q Consensus 55 L~AAr~Agi~~Vp~~~~~~~d~~P~~~~~~TWgea~~~ 92 (122)
|.|...+||+.+.|++..++-|+-+ ++...|-++|+.
T Consensus 77 lAAl~~~gidn~~I~~~g~e~P~~D-Gsa~~~~~~l~~ 113 (271)
T E1X111_HALMS/4 77 LSVLYGLGINNAYIEIDGPEVPIMD-GSGASFVFLLKE 113 (271)
T ss_pred HHHHHhCCCCcEEEEeCCCCCCcCC-CchHHHHHHHHH
No 27
>PF03555.18 ; Flu_C_NS2 ; Influenza C non-structural protein (NS2)
Probab=21.99 E-value=1.1e+02 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred CCCCCcHHHHHH
Q FD01873445_009 80 SSTGKTWLQKFR 91 (122)
Q Consensus 80 ~~~~~TWgea~~ 91 (122)
+..+.||+||++
T Consensus 45 ~yapRTWEdAi~ 56 (57)
T NEP_INCAA/6-62 45 SFAPRTWEDAIK 56 (57)
T ss_pred CCCCccHHHHhh