Query FD01848354_04494 hypothetical protein
Match_columns 126
No_of_seqs 108 out of 116
Neff 4.6691
Searched_HMMs 86581
Date Tue Feb 27 19:06:36 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/5477217.hhr -oa3m ../results/5477217.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7RT7_K RhsP2; Type Six Secreti 100.0 2.6E-33 3E-38 206.4 9.4 121 1-126 25-155 (155)
2 7ZHL_A RHS repeat protein; bac 88.4 2.5 2.9E-05 29.7 4.9 50 1-50 3-59 (116)
3 1X7V_C PA3566 protein; structu 38.0 89 0.001 18.6 2.9 18 44-61 9-26 (99)
4 6X6X_A ADP-ribosyltransferase; 36.8 1E+02 0.0012 25.9 3.9 51 4-54 97-171 (420)
5 PF08803.15 ; ydhR ; Putative m 34.2 86 0.001 21.1 2.6 18 44-61 2-19 (98)
6 PF16462.9 ; Phage_TAC_14 ; Pha 33.2 1E+02 0.0012 22.1 2.9 19 1-19 20-38 (113)
7 2PD1_B Hypothetical protein; u 31.9 1.2E+02 0.0014 18.4 2.9 18 44-61 8-25 (104)
8 2GFF_A LsrG Protein; dimeric a 29.6 1.4E+02 0.0016 18.7 2.8 18 44-61 4-21 (106)
9 1Y0H_B hypothetical protein Rv 29.6 1.2E+02 0.0014 18.4 2.5 18 44-61 8-25 (102)
10 1Q8B_A Protein yjcS; Structura 29.0 1.4E+02 0.0017 18.5 2.8 18 44-61 16-34 (105)
11 3FGV_A uncharacterized protein 27.5 1.5E+02 0.0017 18.3 2.6 18 44-61 17-34 (106)
12 2RIL_A Antibiotic biosynthesis 27.4 1.1E+02 0.0013 18.9 2.1 18 44-61 8-25 (99)
13 3KKF_A Putative antibiotic bio 27.2 1.3E+02 0.0015 18.4 2.4 18 44-61 8-25 (105)
14 8ECP_B Antibiotic biosynthesis 26.1 1.2E+02 0.0014 18.3 2.1 18 44-61 5-22 (102)
15 2BBE_A hypothetical protein SO 25.9 1.8E+02 0.0021 17.7 2.8 18 44-61 16-33 (108)
16 4ZOS_A protein YE0340 from Yer 25.6 1.7E+02 0.002 17.7 2.6 18 44-61 14-31 (106)
17 3GZ7_B Putative antibiotic bio 25.0 1.8E+02 0.0021 19.0 2.9 18 44-61 23-40 (115)
18 6FXD_B MupZ; epoxide hydrolase 24.6 1.4E+02 0.0016 22.0 2.5 18 44-61 26-43 (141)
19 2FB0_A conserved hypothetical 24.4 2E+02 0.0023 16.8 2.7 18 44-61 7-24 (94)
20 3HX9_B Protein Rv3592; di-heme 24.0 1.9E+02 0.0022 19.5 2.9 18 44-61 5-22 (124)
21 PF11961.12 ; DUF3475 ; Domain 24.0 99 0.0011 20.9 1.5 32 6-37 17-48 (57)
22 3BM7_A Protein of unknown func 23.6 1.8E+02 0.002 19.0 2.6 18 44-61 23-40 (115)
23 6DS7_B Heme-degrading monooxyg 23.6 1.8E+02 0.0021 17.9 2.6 18 44-61 4-21 (99)
24 4HL9_G Antibiotic biosynthesis 22.8 1.7E+02 0.0019 19.1 2.4 18 44-61 26-43 (118)
25 PF15636.10 ; Tox-GHH ; GHH sig 22.7 3E+02 0.0034 18.0 3.5 42 7-48 34-76 (78)
26 1SQE_B hypothetical protein PG 22.5 2.2E+02 0.0025 18.4 2.8 18 44-61 5-22 (109)
27 PF10126.13 ; Nit_Regul_Hom ; U 21.0 65 0.00075 25.1 0.2 13 6-18 34-46 (107)
28 8AVH_A Heme-degrading monooxyg 20.9 2.4E+02 0.0028 17.8 2.8 18 44-61 4-21 (107)
29 2OB9_B Tail assembly chaperone 20.8 2.3E+02 0.0026 20.7 2.9 19 1-19 30-48 (130)
30 1LQ9_B ACTVA-ORF6 MONOOXYGENAS 20.2 2.2E+02 0.0025 18.2 2.5 18 44-61 12-30 (112)
31 4DN9_B Antibiotic biosynthesis 20.1 2.3E+02 0.0027 18.8 2.7 18 44-61 26-43 (122)
No 1
>7RT7_K RhsP2; Type Six Secretion System, Effector, Immunity, ADP-ribosyl transferase, RNA, Translation, Complex, TOXIN-ANTITOXIN complex; HET: TRS; 2.49A {Pseudomonas aeruginosa (strain UCBPP-PA14)}
Probab=100.00 E-value=2.6e-33 Score=206.43 Aligned_cols=121 Identities=41% Similarity=0.703 Sum_probs=116.3 Template_Neff=8.800
Q ss_pred CCeeEEecCCHHHHHHHHHhCCCCCCCcceecCChHHHhhCCeEEEEEEecCChHHHHHHhcccCCCcchHHHCCCCCCC
Q FD01848354_044 1 EAEIFYRTMSEDNYATLQSTGRMPGTTETTISPTRVFSEAYDGVLVKFNMKSGTQKSLENIGIRDGSKLTEVMYPDMPSP 80 (126)
Q Consensus 1 ~~EifYRtMS~~~~~~L~~tG~l~~t~ETfiSp~~~ys~~Y~GvlV~f~~kpGT~~~L~~iGv~~~s~~~~~~~p~mP~~ 80 (126)
++|+|||+||++||+.|..+|.+|+++||++||...|+.+|+|++|+|.++|||.+.|..||+.+++.... .||+||
T Consensus 25 ~~e~~yr~~s~~~~~~l~~t~~l~~t~et~~sp~~~y~~~y~g~~v~~~~~~gt~~~l~~iG~~~~~~~~~-~~~~~~-- 101 (155)
T 7RT7_K 25 GNEIYYRTLSEQHLEILRNNFEVPPTSETFISPLQSYSQEYDGKLVRLTASPGTMNELSKIGVTANSGTGL-LLPDLP-- 101 (155)
T ss_dssp SCEEEEEEECHHHHHHHHHHCCCCCCTTCEEBSCHHHHTTSSSEEEEEEECTTHHHHHHHTEEECTTCCSS-SCCSSC--
T ss_pred CCeEEEEeCCHHHHHHHHhcCCCCCCCcceecCchhccceeCceEEEEEecCCchhceeeeeeecCCCccc-ccCCCC--
Confidence 47999999999999999999999999999999999999999999999999999999999999999887776 499999
Q ss_pred CCCCCcccccEEEEEcC----------CeeeecCCccCchHHHHhhhccceEEEcC
Q FD01848354_044 81 TKTKGWGYNYARFKGEG----------EQINIGLGKEGGNALKVFNDGIDSYEVVR 126 (126)
Q Consensus 81 ~~~~gW~~~~a~fK~Eg----------gqinigLG~~~G~al~iFN~nI~~f~~i~ 126 (126)
...++|..++++||.|+ ++||||||+ |+||+|||+||++|++|+
T Consensus 102 ~~~~~w~~~~~~fk~e~~~~~~~~~~~~~~ni~lg~--g~~l~ifN~ni~~~~~i~ 155 (155)
T 7RT7_K 102 PARKGWKQNNALFKLEALKKPTINEGGGVINTGLGD--GKALEIFNKNLIDFEVID 155 (155)
T ss_dssp BCCTTHHHHCEEEEEECTTCTTTGGGTCEEEEECCS--SHHHHHHHHHEEEEEEEC
T ss_pred CCCCCccccceeecccccCCCcccCCCCceeccCCC--chHHHHHhhccceeEEcC
Confidence 99999999999999999 999999999 999999999999999874
No 2
>7ZHL_A RHS repeat protein; bacterial toxin, secreted toxin, T6SS, ADP-ribosyltransferase, translation inhibitor, TOXIN; 2.2A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=88.43 E-value=2.5 Score=29.71 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCeeEEecCCHHHHHHHHHhCCCC--CCCccee---cCChHHHhhC--CeEEEEEEe
Q FD01848354_044 1 EAEIFYRTMSEDNYATLQSTGRMP--GTTETTI---SPTRVFSEAY--DGVLVKFNM 50 (126)
Q Consensus 1 ~~EifYRtMS~~~~~~L~~tG~l~--~t~ETfi---Sp~~~ys~~Y--~GvlV~f~~ 50 (126)
....+.|.||.++|+.+..+|++. .++.|++ +...+|...+ ..+-|+|.+
T Consensus 3 ~~~~vgr~ms~~e~~~m~~tg~v~~~~~g~t~v~~~~~~~~~~~~~~~g~~~vefdv 59 (116)
T 7ZHL_A 3 STATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDV 59 (116)
T ss_dssp CEEEEEEEECHHHHHHHHHHTBCCCCTTSEEEEBSSCCTTSSTTTSCTTCEEEEEEE
T ss_pred cceeeccccCHHHHHHHHhhCCeeecCCCceeeecCcChhhhhhhccCCceEEEeec
No 3
>1X7V_C PA3566 protein; structural genomics, protein structure initiative, Midwest Center for Structural Genomics, alpha-beta plait, PSI, MCSG, UNKNOWN FUNCTION; HET: MSE; 1.78A {Pseudomonas aeruginosa} SCOP: l.1.1.1, d.58.4.11
Probab=38.05 E-value=89 Score=18.56 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (99)
T 1X7V_C 9 LIATITAAPGHAEALERE 26 (99)
T ss_dssp EEEEEEECTTCHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHH
No 4
>6X6X_A ADP-ribosyltransferase; RIBOSYLTRANSFERASE, CDTA, TOXIN, TRANSFERASE; HET: UTG; 1.71A {Clostridioides difficile} SCOP: d.166.1.1, d.166.1.0
Probab=36.82 E-value=1e+02 Score=25.90 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred eEEec-------------------CCHHHHHHHH---HhCCCCCCC--cceecCChHHHhhCCeEEEEEEecCCh
Q FD01848354_044 4 IFYRT-------------------MSEDNYATLQ---STGRMPGTT--ETTISPTRVFSEAYDGVLVKFNMKSGT 54 (126)
Q Consensus 4 ifYRt-------------------MS~~~~~~L~---~tG~l~~t~--ETfiSp~~~ys~~Y~GvlV~f~~kpGT 54 (126)
+.||. |+.++++.|+ ..+.+.-.+ .|++++..+.+.....|++++.+.+||
T Consensus 97 ~vyr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f~sts~~~~~~~~~~~~~v~~~i~~p~g~ 171 (420)
T 6X6X_A 97 YVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKETIQNKLFKQDGFKDISLYEPGKGDEKPTPLLMHLKLPRNT 171 (420)
T ss_dssp EEEEEECGGGGTCCSCSSCTTCCCCCHHHHHHHHHHHTTCCEEEEEEEEEBSSCCCTTSCCCSSEEEEEEECTTC
T ss_pred EEEEEcCHHHhcCCcccccCCCCccCHHHHHHHHHHhCCCccccccceeeeccCCCCCCCCCCCEEEEEEcCCCC
No 5
>PF08803.15 ; ydhR ; Putative mono-oxygenase ydhR
Probab=34.19 E-value=86 Score=21.11 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.|+|.++||..+.+.+.
T Consensus 2 ~~v~~~~~~~~~~e~~~~ 19 (98)
T C1D9W2_LARHH/6 2 LQIDFDYAGPWGADLAAA 19 (98)
T ss_pred EEEEEecCCCCHHHHHHH
No 6
>PF16462.9 ; Phage_TAC_14 ; Phage tail assembly chaperone protein, TAC
Probab=33.18 E-value=1e+02 Score=22.06 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCeeEEecCCHHHHHHHHH
Q FD01848354_044 1 EAEIFYRTMSEDNYATLQS 19 (126)
Q Consensus 1 ~~EifYRtMS~~~~~~L~~ 19 (126)
|.++|.|.||..++..+..
T Consensus 20 g~~v~vr~lt~~e~~~~~~ 38 (113)
T T0P6Z0_PHOTE/3 20 GTKVNLRRMTASELMDLEE 38 (113)
T ss_pred CcEEEEEeCCHHHHHHHHH
No 7
>2PD1_B Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC7253, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: ACT, MSE; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=31.90 E-value=1.2e+02 Score=18.40 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|.++||..+.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (104)
T 2PD1_B 8 LFVRLEAKPGQEAALADF 25 (104)
T ss_dssp EEEEEEBCTTCHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHH
No 8
>2GFF_A LsrG Protein; dimeric alpha+beta barrel Ferredoxin fold, SUGAR BINDING PROTEIN; HET: MSE; 1.75A {Yersinia pestis} SCOP: d.58.4.0, l.1.1.1
Probab=29.59 E-value=1.4e+02 Score=18.72 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|+++||..+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (106)
T 2GFF_A 4 TLVEINVKEDKVDQFIEV 21 (106)
T ss_dssp EEEEEEBCGGGHHHHHHH
T ss_pred EEEEEEECcccHHHHHHH
No 9
>1Y0H_B hypothetical protein Rv0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel beta-sheet, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics; HET: ACT; 1.6A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=29.56 E-value=1.2e+02 Score=18.39 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
++++|.++||..+.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (102)
T 1Y0H_B 8 VIARFMPRPDARSALRAL 25 (102)
T ss_dssp EEEEECBCGGGHHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHH
No 10
>1Q8B_A Protein yjcS; Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Unknown Function; HET: MSE; 1.9A {Bacillus subtilis} SCOP: d.58.4.6
Probab=29.04 E-value=1.4e+02 Score=18.47 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEEEecCC-hHHHHHHh
Q FD01848354_044 44 VLVKFNMKSG-TQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpG-T~~~L~~i 61 (126)
+.++|+++|| ..+.+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (105)
T 1Q8B_A 16 ITACLKIISDKDLNEIMKE 34 (105)
T ss_dssp EEEEEEECCCSCHHHHHHH
T ss_pred EEEEEEECChhhHHHHHHH
No 11
>3FGV_A uncharacterized protein with ferredoxin-like fold; PHOSPHOSERINE AMINOTRANSFERASE SERC, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE; HET: UNL, EDO, MSE; 1.3A {Silicibacter pomeroyi DSS-3}
Probab=27.46 E-value=1.5e+02 Score=18.32 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|.++||..+.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (106)
T 3FGV_A 17 VIVKSTPQRGKFNAFAEL 34 (106)
T ss_dssp EEEEECBCTTCHHHHHHH
T ss_pred EEEEEEcCCCchHHHHHH
No 12
>2RIL_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, Putative monooxygenase, Antibiotic biosynthesis monooxygenase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure; HET: MSE; 1.26A {Shewanella loihica}
Probab=27.45 E-value=1.1e+02 Score=18.87 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (99)
T 2RIL_A 8 LINPFKVPADKLEAAIEY 25 (99)
T ss_dssp EEEEEBCCTTCHHHHHHH
T ss_pred EEEeEEcCHHHHHHHHHH
No 13
>3KKF_A Putative antibiotic biosynthesis monooxygenase; Putative antibiotic biosynthesis monooxygenase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2; HET: P6G, MSE; 1.3A {Bacteroides thetaiotaomicron}
Probab=27.17 E-value=1.3e+02 Score=18.41 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (105)
T 3KKF_A 8 RLSRIIIDPERLEEYNAY 25 (105)
T ss_dssp EEEEEEECGGGHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHH
No 14
>8ECP_B Antibiotic biosynthesis monooxygenase; glyoxal, CYTOSOLIC PROTEIN; HET: CME, ACT, GOL; 1.5A {Pseudomonas aeruginosa}
Probab=26.12 E-value=1.2e+02 Score=18.31 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|.++||..+.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (102)
T 8ECP_B 5 VLVQFDVPSDKAEAFAAA 22 (102)
T ss_dssp EEEEEECCGGGHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHh
No 15
>2BBE_A hypothetical protein SO0527; MCSG, SO0527, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, UNKNOWN FUNCTION; HET: SO4; 1.97A {Shewanella oneidensis} SCOP: d.58.4.0
Probab=25.85 E-value=1.8e+02 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++|+..+.+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (108)
T 2BBE_A 16 CVASFLSKEGKTEALIAA 33 (108)
T ss_dssp EEEEEEECTTCHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHH
No 16
>4ZOS_A protein YE0340 from Yersinia enterocolitica subsp. enterocolitica 8081; Yersinia enterocolitica subsp. enterocolitica 8081, hypothetical protein YE0340, Structural Genomics, CSGID, Center for Structural Genomics of; HET: PO4; 2.2A {Yersinia enterocolitica}
Probab=25.60 E-value=1.7e+02 Score=17.70 Aligned_cols=18 Identities=0% Similarity=0.353 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (106)
T 4ZOS_A 14 IICELRCEPENRERVKEL 31 (106)
T ss_dssp EEEEEEECGGGHHHHHHH
T ss_pred EEEEEEEChhhHHHHHHH
No 17
>3GZ7_B Putative antibiotic biosynthesis monooxygenase; NP_888398.1, Putative antibiotic biosynthesis monooxygenase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative; HET: CIT, MSE; 2.15A {Bordetella bronchiseptica}
Probab=25.05 E-value=1.8e+02 Score=19.01 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|.++||..+.+.+.
T Consensus 23 ~~~~~~v~~~~~~~~~~~ 40 (115)
T 3GZ7_B 23 EIASILVQPGREADFEAG 40 (115)
T ss_dssp EEEEEEBCTTCHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHH
No 18
>6FXD_B MupZ; epoxide hydrolase, BIOSYNTHETIC PROTEIN; 1.45A {Pseudomonas fluorescens}
Probab=24.63 E-value=1.4e+02 Score=21.95 Aligned_cols=18 Identities=6% Similarity=0.198 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
++++|.++||..+.++++
T Consensus 26 ~i~~~~vkp~~~~ef~~~ 43 (141)
T 6FXD_B 26 AMPYFEIPERHLEAFKAY 43 (141)
T ss_dssp EEEEEECCGGGHHHHHHH
T ss_pred EEEEEEcChhhHHHHHHH
No 19
>2FB0_A conserved hypothetical protein; Conserved hypothetical protein, SAD, Bacteroides thetaiotaomicron, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural; HET: GOL, MSE; 2.1A {Bacteroides thetaiotaomicron}
Probab=24.44 E-value=2e+02 Score=16.85 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (94)
T 2FB0_A 7 LNVFVRVNETNREKAIEA 24 (94)
T ss_dssp EEEEEECCTTTHHHHHHH
T ss_pred EEEEEEeCcccHHHHHHH
No 20
>3HX9_B Protein Rv3592; di-heme, beta barrel, dimer, OXIDOREDUCTASE; HET: HEM; 1.75A {Mycobacterium tuberculosis} SCOP: d.58.4.0
Probab=24.01 E-value=1.9e+02 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
++++|+++||..+.+.++
T Consensus 5 ~i~~~~~~~~~~~~~~~~ 22 (124)
T 3HX9_B 5 KINAIEVPAGAGPELEKR 22 (124)
T ss_dssp EEEEECCCTTCHHHHHHH
T ss_pred EEEEEEECCCchHHHHHH
No 21
>PF11961.12 ; DUF3475 ; Domain of unknown function (DUF3475)
Probab=23.97 E-value=99 Score=20.88 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred EecCCHHHHHHHHHhCCCCCCCcceecCChHH
Q FD01848354_044 6 YRTMSEDNYATLQSTGRMPGTTETTISPTRVF 37 (126)
Q Consensus 6 YRtMS~~~~~~L~~tG~l~~t~ETfiSp~~~y 37 (126)
|++||+++...|++.---...-...||.+..|
T Consensus 17 ~~sLsd~~i~~lr~~~l~s~GV~~LVS~d~~~ 48 (57)
T W1Q067_AMBTC/3 17 WRSLSDNQISRLKAETITLEGIRKIVSNDDSF 48 (57)
T ss_pred HHhcCHHHHHHHHHHccCChhhhhccCCCHHH
No 22
>3BM7_A Protein of unknown function with ferredoxin-like fold; FERREDOXIN-LIKE FOLD, ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=23.62 E-value=1.8e+02 Score=18.99 Aligned_cols=18 Identities=11% Similarity=0.397 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
++++|.++||..+.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (115)
T 3BM7_A 23 VVATLKVQPAKAAEFEKV 40 (115)
T ss_dssp EEEEEEECGGGHHHHHHH
T ss_pred EEEEEEeChhhHHHHHHH
No 23
>6DS7_B Heme-degrading monooxygenase HmoB; Heme Oxygenase (decyclizing) Activity, Monooxygenase Activity, Oxidoreductase Activity, Heme Binding, Metal Ion Binding, Heme Catabolic Process; HET: HEM; 1.9A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)} SCOP: d.58.4.0
Probab=23.56 E-value=1.8e+02 Score=17.85 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+++++.++||..+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (99)
T 6DS7_B 4 KINAIEVPAGAGPELEKR 21 (99)
T ss_dssp EEEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCCcHHHHHH
No 24
>4HL9_G Antibiotic biosynthesis monooxygenase; nysgrc, psi-biology, Structural Genomics, New York Structural Genomics Research Consortium, alpha-beta, OXIDOREDUCTASE; HET: MSE, CSO; 1.93A {Rhodospirillum rubrum}
Probab=22.81 E-value=1.7e+02 Score=19.06 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (118)
T 4HL9_G 26 VIAQDFIKPEAIDIVLPL 43 (118)
T ss_dssp EEEEEEECGGGHHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHH
No 25
>PF15636.10 ; Tox-GHH ; GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=22.69 E-value=3e+02 Score=18.01 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred ecCCHHHHHHHHHhCCCCCCCcceecCChHHHh-hCCeEEEEE
Q FD01848354_044 7 RTMSEDNYATLQSTGRMPGTTETTISPTRVFSE-AYDGVLVKF 48 (126)
Q Consensus 7 RtMS~~~~~~L~~tG~l~~t~ETfiSp~~~ys~-~Y~GvlV~f 48 (126)
+..++++.+.|+.+|+++.-.-.++-+...|.+ ..++-.|.|
T Consensus 34 ~~Wt~~e~~~ll~~g~~~~y~~~~~~~~~~~p~la~d~~ni~~ 76 (78)
T I3KLV5_ORENI/2 34 RAWSEVEKQQLLSGGRVQGYDGYYSLPIEQQPELSDCPSNIHF 76 (78)
T ss_pred CCCCHHHHHHHHhCCCCCCCcceecCCHHHCHhhCCCccceee
No 26
>1SQE_B hypothetical protein PG130; Structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION; 1.5A {Staphylococcus aureus} SCOP: d.58.4.5, l.1.1.1
Probab=22.50 E-value=2.2e+02 Score=18.45 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.+.|.++||..+.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (109)
T 1SQE_B 5 AENRLQLQKGSAEETIER 22 (109)
T ss_dssp EEEEEEEETTCHHHHHHT
T ss_pred EEEEEEeCCCCHHHHHHH
No 27
>PF10126.13 ; Nit_Regul_Hom ; Uncharacterized protein, homolog of nitrogen regulatory protein PII
Probab=21.03 E-value=65 Score=25.14 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=0.0 Template_Neff=3.100
Q ss_pred EecCCHHHHHHHH
Q FD01848354_044 6 YRTMSEDNYATLQ 18 (126)
Q Consensus 6 YRtMS~~~~~~L~ 18 (126)
||.||+++++-|.
T Consensus 34 YkGmSP~~WkgF~ 46 (107)
T A6UTQ3_META3/1 34 YKGMSPQEWAGFL 46 (107)
T ss_pred ccCCCHHHhcccc
No 28
>8AVH_A Heme-degrading monooxygenase; HEME DEGRADATION, MONOOXYGENASE, OXIDOREDUCTASE; 1.9A {Bacillus cereus ATCC 14579}
Probab=20.90 E-value=2.4e+02 Score=17.76 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
+.++|.++||..+.+.++
T Consensus 4 ~~~~~~v~~~~~~~~~~~ 21 (107)
T 8AVH_A 4 VTNTAKITKGNGHKLIER 21 (107)
T ss_dssp EEEEEEEETTCHHHHHHH
T ss_pred EEEEEEeCCccHHHHHHH
No 29
>2OB9_B Tail assembly chaperone; Bacteriophage HK97, morphogenesis, tail assembly chaperone, CHAPERONE; HET: MSE; 2.3A {Enterobacteria phage HK97}
Probab=20.78 E-value=2.3e+02 Score=20.74 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CCeeEEecCCHHHHHHHHH
Q FD01848354_044 1 EAEIFYRTMSEDNYATLQS 19 (126)
Q Consensus 1 ~~EifYRtMS~~~~~~L~~ 19 (126)
|.++|+|.||..++..+.+
T Consensus 30 g~~v~vr~ls~~e~~~~~~ 48 (130)
T 2OB9_B 30 GVKVVLREPSGEAWLRWQE 48 (130)
T ss_dssp TEEEEEECCCHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHH
No 30
>1LQ9_B ACTVA-ORF6 MONOOXYGENASE; MONOOXYGENASE, AROMATIC POLYKETIDES, ACTINORHODIN, DIHYDROKALAFUNGIN, STREPTOMYCES COELICOLOR, OXIDOREDUCTASE; HET: PG4; 1.3A {Streptomyces coelicolor} SCOP: d.58.4.3
Probab=20.16 E-value=2.2e+02 Score=18.21 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEEEEEec-CChHHHHHHh
Q FD01848354_044 44 VLVKFNMK-SGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~k-pGT~~~L~~i 61 (126)
++++|.++ ||..+.+.+.
T Consensus 12 ~~~~~~v~~~~~~~~~~~~ 30 (112)
T 1LQ9_B 12 AVVTFPVDGPATQHKLVEL 30 (112)
T ss_dssp EEEEEEBSSHHHHHHHHHH
T ss_pred EEEEEEeCChHHHHHHHHH
No 31
>4DN9_B Antibiotic biosynthesis monooxygenase; STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGRC, PSI-Biology, New York Structural; HET: SO4, DIO, MSE; 2.05A {Chloroflexus aurantiacus}
Probab=20.14 E-value=2.3e+02 Score=18.80 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEEEEEecCChHHHHHHh
Q FD01848354_044 44 VLVKFNMKSGTQKSLENI 61 (126)
Q Consensus 44 vlV~f~~kpGT~~~L~~i 61 (126)
++++|.++||..+.+.+.
T Consensus 26 ~~~~~~v~~~~~~~~~~~ 43 (122)
T 4DN9_B 26 LIGKMRATPGQRDALIAI 43 (122)
T ss_dssp EEEEEEESTTCHHHHHHH
T ss_pred EEEEEEcCCccHHHHHHH