Query FD01543133_03431 Rhs-family protein
Match_columns 119
No_of_seqs 34 out of 43
Neff 3.1163
Searched_HMMs 86581
Date Tue Feb 27 20:17:14 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/3074105.hhr -oa3m ../results/3074105.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4RSI_A Structural maintenance 65.5 20 0.00023 27.6 3.7 36 18-53 138-173 (397)
2 5H69_A Chromosome partition pr 57.6 43 0.0005 24.0 4.1 34 23-56 74-107 (261)
3 4U4P_B Structural maintenance 53.3 58 0.00067 23.1 4.1 33 23-56 65-97 (247)
4 7DG5_C Structural maintenance 47.5 1E+02 0.0012 21.6 4.6 40 17-56 52-91 (215)
5 4U4P_A Structural maintenance 42.3 1E+02 0.0012 21.9 4.0 31 23-53 61-91 (233)
6 4RSJ_C Chromosome partition pr 39.3 1.5E+02 0.0017 21.8 4.5 40 17-56 85-124 (276)
7 4RSI_B Structural maintenance 37.7 1.4E+02 0.0016 23.3 4.3 38 17-56 141-178 (397)
8 5MG8_C Structural maintenance 36.9 98 0.0011 24.5 3.5 40 17-56 119-159 (347)
9 1GXL_B CHROMOSOME SEGREGATION 36.3 1.9E+02 0.0022 20.2 4.5 35 22-56 55-89 (213)
10 PF18330.5 ; Lig_C ; Ligase Pab 35.4 1.2E+02 0.0014 23.3 3.7 27 27-53 52-82 (121)
11 6WG6_B Structural maintenance 34.0 1.8E+02 0.0021 21.0 4.2 31 23-53 87-117 (256)
12 PF11363.12 ; DUF3164 ; Protein 33.8 80 0.00092 25.6 2.7 22 21-42 150-176 (195)
13 PF18095.5 ; PAS_12 ; UPF0242 C 31.2 58 0.00067 27.0 1.6 26 17-42 94-119 (153)
14 7TVE_D Structural maintenance 30.9 2.6E+02 0.003 26.8 5.6 56 1-56 525-580 (1157)
15 4OQP_A Deoxyribonucleoside reg 30.1 1.7E+02 0.002 22.9 3.9 38 17-54 226-263 (264)
16 PF04198.17 ; Sugar-bind ; Puta 27.8 1.5E+02 0.0017 22.6 3.1 37 17-53 214-250 (250)
17 PF09082.14 ; DUF1922 ; Domain 26.9 1.2E+02 0.0014 20.4 2.3 28 40-67 38-65 (67)
18 5MG8_B Structural maintenance 26.9 2.4E+02 0.0028 21.4 4.0 40 17-56 130-169 (294)
19 4KYZ_D Designed protein OR327; 25.9 2E+02 0.0024 24.6 3.8 32 23-54 31-66 (172)
20 PF08955.14 ; BofC_C ; BofC C-t 25.5 2.5E+02 0.0028 18.3 3.5 25 26-54 49-73 (76)
21 1GXJ_A CHROMOSOME SEGREGATION 24.5 3.8E+02 0.0044 18.6 4.3 34 23-56 44-77 (186)
22 1MWQ_A HYPOTHETICAL PROTEIN HI 22.1 1.5E+02 0.0018 19.5 2.1 15 40-54 66-80 (101)
23 4L51_B Transcriptional regulat 22.1 2.1E+02 0.0025 22.6 3.1 28 27-54 239-266 (266)
24 3L51_A Structural maintenance 21.6 4E+02 0.0046 18.4 4.0 39 15-53 22-60 (161)
25 7T2F_B HEEH mini protein HEEH_ 21.2 3.5E+02 0.0041 18.7 3.6 34 26-59 17-53 (53)
26 4LBH_A 5-chloro-2-hydroxyhydro 20.7 1.7E+02 0.002 19.4 2.1 15 40-54 60-74 (100)
27 PF03795.18 ; YCII ; YCII-relat 20.5 1.9E+02 0.0022 18.1 2.1 15 40-54 56-70 (88)
28 PF21201.1 ; Tertiapin ; Tertia 20.1 51 0.00059 19.3 -0.4 7 97-103 10-16 (21)
29 7DG5_D Structural maintenance 20.1 4.7E+02 0.0055 18.6 4.2 31 23-53 61-91 (213)
No 1
>4RSI_A Structural maintenance of chromosomes protein 2; Smc hinge domain with coiled coil, chromosomal condensation, CELL CYCLE; HET: PO4; 2.9A {Saccharomyces cerevisiae}
Probab=65.52 E-value=20 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred cCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 18 IRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 18 ikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
++++.+.|..||+.+=.+.-..|.|.+..+|..++.
T Consensus 138 v~~~~~~~~~ave~~l~~~l~~~vv~~~~~~~~~~~ 173 (397)
T 4RSI_A 138 IDNDNIRYATALQTCAGGRLFNVVVQDSQTATQLLE 173 (397)
T ss_dssp CCTGGGGGHHHHHHHHGGGGGCEEESSHHHHHHHHH
T ss_pred ecCCchhhhHHHHHhccCceeEEEECCHHHHHHHHH
No 2
>5H69_A Chromosome partition protein Smc; SMC protein, DNA BINDING PROTEIN, CELL CYCLE; 2.20040022156A {Geobacillus stearothermophilus 10}
Probab=57.62 E-value=43 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
+.|..||+.+-.+.-..|.|.+.+++..++...+
T Consensus 74 ~~~~~aie~~l~~~~~~~vv~~~~~~~~~~~~~~ 107 (261)
T 5H69_A 74 DRYETAIETALGGAMQHIVVDSEQAARQAIHYLK 107 (261)
T ss_dssp GGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhchhccEEEECCHHHHHHHHHHHH
No 3
>4U4P_B Structural maintenance of chromosomes protein 4; Condensin, SMC, PROTEIN BINDING; 1.89A {Homo sapiens}
Probab=53.28 E-value=58 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
+.|..||+.+-.. -..|.|.+..++..++...+
T Consensus 65 ~~~~~ave~~l~~-l~~~vv~~~~~~~~~~~~~~ 97 (247)
T 4U4P_B 65 EKYDVAISSCCHA-LDYIVVDSIDIAQECVNFLK 97 (247)
T ss_dssp GGGHHHHHHHCGG-GGSEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-CcEEEECCHHHHHHHHHHHH
No 4
>7DG5_C Structural maintenance of chromosomes protein 1A; cohesin, Smc1, Smc3, hinge, DNA BINDING PROTEIN; 2.0A {Mus musculus}
Probab=47.50 E-value=1e+02 Score=21.63 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
.|..-.+.|..||+.+-...-..|.|.+.+++..++...+
T Consensus 52 ~i~~~~~~~~~~ve~~l~~~l~~~vv~~~~~~~~~~~~~~ 91 (215)
T 7DG5_C 52 LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIK 91 (215)
T ss_dssp TEEESSGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHHH
T ss_pred heecCcHHHHHHHHHHhccccCEEEeCCHHHHHHHHHHHH
No 5
>4U4P_A Structural maintenance of chromosomes protein 2; Condensin, SMC, PROTEIN BINDING; 1.89A {Homo sapiens}
Probab=42.26 E-value=1e+02 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
+.|..||+.+-...-..+.|.+.++|..++.
T Consensus 61 ~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~ 91 (233)
T 4U4P_A 61 TSATTALELVAGERLYNVVVDTEVTGKKLLE 91 (233)
T ss_dssp GGGHHHHHHHHGGGGGCEEESCHHHHHHHHH
T ss_pred hhHHHHHHHHhcccceeEEeCCHHHHHHHHH
No 6
>4RSJ_C Chromosome partition protein Smc; Smc hinge domain with coiled coils, CELL CYCLE; 3.5A {Pyrococcus furiosus}
Probab=39.35 E-value=1.5e+02 Score=21.77 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
.|+.-...|..||+.+-...-..|.|.+.+++..+++..+
T Consensus 85 ~i~v~~~~~~~ave~~l~~~l~~~vv~~~~~~~~~~~~~~ 124 (276)
T 4RSJ_C 85 LIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLK 124 (276)
T ss_dssp HCEECSSSSHHHHHHHHGGGGGCEEESSHHHHHHHHHHHH
T ss_pred heecChHHHHHHHHHHhcccccEEEECCHHHHHHHHHHHH
No 7
>4RSI_B Structural maintenance of chromosomes protein 4; Smc hinge domain with coiled coil, chromosomal condensation, CELL CYCLE; HET: PO4; 2.9A {Saccharomyces cerevisiae}
Probab=37.67 E-value=1.4e+02 Score=23.28 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
.|.. .+.|..||+.+-. .-..|.|.+..++..++...+
T Consensus 141 ~i~v-~~~~~~ave~~l~-~l~~~vv~~~~~~~~~~~~l~ 178 (397)
T 4RSI_B 141 LGVI-DDSFDVAISTACP-RLDDVVVDTVECAQHCIDYLR 178 (397)
T ss_dssp SEEE-CGGGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHH
T ss_pred hccC-CHHHHHHHHHHcc-ccCEEEeCCHHHHHHHHHHHH
No 8
>5MG8_C Structural maintenance of chromosomes protein 5; SMC, Structural Maintenance of Chromosomes, Hinge Domain, Smc5, Smc6, Smc5/6, recombination; HET: SO4, GOL; 2.75A {Schizosaccharomyces pombe}
Probab=36.90 E-value=98 Score=24.53 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred ccCCCCHHHHHHHHHHHcC-CCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSG-KNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~g-gk~Nfrv~~~~dA~~LL~ear 56 (119)
.|+.-.+.|..||+.+-.. .-..|.|.+.+++..|+...+
T Consensus 119 ~i~v~~~~~~~ave~~lg~~~l~~~vv~~~~~~~~l~~~l~ 159 (347)
T 5MG8_C 119 NLKCKEKGFAALIEGFFRTDTFRTFIMSNYNDYLKLMDLIT 159 (347)
T ss_dssp GCEESSGGGHHHHHHHHHHHHHTEEEESSHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHCCHhheeEEEeCCHHHHHHHHHHhh
No 9
>1GXL_B CHROMOSOME SEGREGATION SMC PROTEIN; CHROMOSOME SEGREGATION, SMC DIMERISATION DOMAIN, ANTI PARALLEL COILED COIL, SMC PROTEINS; 3.0A {THERMOTOGA MARITIMA} SCOP: d.215.1.1
Probab=36.32 E-value=1.9e+02 Score=20.18 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred CHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 22 TKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 22 Tk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
.+.|..|++.+-...-..+.|.+.++|..+++..+
T Consensus 55 ~~~~~~a~e~~l~~~l~~~v~~~~~~~~~~~~~~~ 89 (213)
T 1GXL_B 55 DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLK 89 (213)
T ss_dssp CTTTHHHHHHHHGGGGGCEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccccCEEEeCCHHHHHHHHHHHH
No 10
>PF18330.5 ; Lig_C ; Ligase Pab1020 C-terminal region
Probab=35.42 E-value=1.2e+02 Score=23.35 Aligned_cols=27 Identities=7% Similarity=-0.056 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred HHHHHHHcCCCc----ceeeCCHHHHHHHHH
Q FD01543133_034 27 LAVEAIGSGKNT----NFRVASEKDAIDLIS 53 (119)
Q Consensus 27 ~Av~~ik~ggk~----Nfrv~~~~dA~~LL~ 53 (119)
+||+.+++|+.. .+|+.+.+.|++||+
T Consensus 52 eai~~v~~g~~v~e~f~irf~~~~~~~~~~~ 82 (121)
T O29409_ARCFU/2 52 ESIRECKRGEMVCEESELVFESPDVLELFKL 82 (121)
T ss_pred HHHHHHHcCCceeEEEEEEeCCHHHHHHHHH
No 11
>6WG6_B Structural maintenance of chromosomes protein 3; Protein-DNA complex, ATPase, DNA-binding protein, Genome organization, Sister chromatid cohesion, Transcription regulation, CELL CYCLE, CELL CYCLE-DNA; 3.54A {Homo sapiens}
Probab=34.03 E-value=1.8e+02 Score=20.96 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
+.|..||+.+-...-..|.|.+.+++..++.
T Consensus 87 ~~~~~ave~~l~~~l~~~vv~~~~~~~~~~~ 117 (256)
T 6WG6_B 87 PAFYTCVEVTAGNRLFYHIVDSDEVSTKILM 117 (256)
T ss_dssp GGGHHHHHHHHGGGGGCEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccceEEEeCCHHHHHHHHH
No 12
>PF11363.12 ; DUF3164 ; Protein of unknown function (DUF3164)
Probab=33.76 E-value=80 Score=25.58 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCHHHHHHHHHHH-----cCCCcceee
Q FD01543133_034 21 GTKEWRLAVEAIG-----SGKNTNFRV 42 (119)
Q Consensus 21 GTk~Wk~Av~~ik-----~ggk~Nfrv 42 (119)
+.+.|++|+++|+ .+.+..||+
T Consensus 150 ~d~~w~~am~~i~~s~~~~~sk~Yir~ 176 (195)
T Q6QIE4_BPBMU/1 150 TDPRWLEAMRAIGEALQVIGSKSYVRV 176 (195)
T ss_pred CCHHHHHHHHHHHHhceeecceeEEEE
No 13
>PF18095.5 ; PAS_12 ; UPF0242 C-terminal PAS-like domain
Probab=31.16 E-value=58 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.672 Sum_probs=0.0 Template_Neff=4.100
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceee
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRV 42 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv 42 (119)
+|.+|..+|++|+..+......-.|.
T Consensus 94 iv~~g~~eW~~~L~~l~~~~e~~~~L 119 (153)
T F8L247_PARAV/2 94 IVQDGLAEWKTQIQGLSSSHEAKIRL 119 (153)
T ss_pred HhhhCHHHHHHHHHhcccCCceEEEE
No 14
>7TVE_D Structural maintenance of chromosomes protein 6; Nse1, Nse3, Nse4, Smc5, Smc6, Nse2, ATP, DNA BINDING PROTEIN-DNA complex; HET: ATP; 3.8A {Saccharomyces cerevisiae W303}
Probab=30.88 E-value=2.6e+02 Score=26.84 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCCccccccccCCCccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 1 KCGLTGNEVGNASNLPVIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 1 ~~g~~~~~~~~as~l~vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
+..+.....+.-..+--++++-..|..||+.+-...-..|.|.+.+||..|+...+
T Consensus 525 ~~~~~~~~~gplg~~i~v~~~~~~~~~ave~~lg~~l~~~vv~~~~d~~~l~~~l~ 580 (1157)
T 7TVE_D 525 KNEFETPAIGPLGSLVTIRKGFEKWTRSIQRAISSSLNAFVVSNPKDNRLFRDIMR 580 (1157)
T ss_dssp --------------------------------------------------------
T ss_pred ccCCCCCCCCCCccceEecCCcHHHHHHHHHHhhhccceEEeCCHHHHHHHHHHHH
No 15
>4OQP_A Deoxyribonucleoside regulator; Rossmann Fold, Sugar-binding transcriptional regulator, Schiff base, Transcription; HET: PED; 1.6A {Bacillus subtilis subsp. subtilis} SCOP: c.124.1.0
Probab=30.05 E-value=1.7e+02 Score=22.89 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHH
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQ 54 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~e 54 (119)
|+--+...+.+||..+-+++-.|..|-+...|+.||+.
T Consensus 226 v~va~G~~K~~av~~~l~~~~~~~litD~~~A~~ll~~ 263 (264)
T 4OQP_A 226 ILVAGGSRKVSSIHGALTGKYANVLIIDQHTARALVND 263 (264)
T ss_dssp EEECCSGGGHHHHHHHHHTTCCSEEEEEHHHHHHHHC-
T ss_pred EEEecCHHHHHHHHHHHhcCCCCEEEEcHHHHHHHHhc
No 16
>PF04198.17 ; Sugar-bind ; Putative sugar-binding domain
Probab=27.84 E-value=1.5e+02 Score=22.64 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
|+-.+...+.+||..+-+++-.|..+-|...|.+||+
T Consensus 214 i~~a~G~~K~~~l~~~l~~~~~~~l~~D~~~A~~ll~ 250 (250)
T Q97L54_CLOAB/8 214 IAVAGSKLKAEAIVATQINGRGNILITDEGTAKEIVK 250 (250)
T ss_pred EEEecCHHHHHHHHHHHhcCCCCEEEEeHHHHHHHhC
No 17
>PF09082.14 ; DUF1922 ; Domain of unknown function (DUF1922)
Probab=26.95 E-value=1.2e+02 Score=20.37 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred eeeCCHHHHHHHHHHhccccccCCCCCC
Q FD01543133_034 40 FRVASEKDAIDLISQGRGRMQRQGAPND 67 (119)
Q Consensus 40 frv~~~~dA~~LL~earg~m~r~~tYt~ 67 (119)
+++.|.++|..++.+.+..+...+.+..
T Consensus 38 ~~~~~~~ea~~~v~~l~~~~~~~~~f~~ 65 (67)
T U6EF32_9EURY/2 38 AKTQDAQDAAEKVQELQEEKYGGAYFTT 65 (67)
T ss_pred EEeCCHHHHHHHHHHHHHHHhccccccc
No 18
>5MG8_B Structural maintenance of chromosomes protein 6; SMC, Structural Maintenance of Chromosomes, Hinge Domain, Smc5, Smc6, Smc5/6, recombination; HET: SO4, GOL; 2.75A {Schizosaccharomyces pombe}
Probab=26.86 E-value=2.4e+02 Score=21.36 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred ccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 17 VIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 17 vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
.|....+.|..||+.+-...-..|.|.+.++|..++...+
T Consensus 130 ~i~v~~~~~~~ave~~l~~~l~~~vv~~~~~~~~~~~~l~ 169 (294)
T 5MG8_B 130 YMTVKEQKWHLIIERILGNVINGFIVRSHHDQLILKELMR 169 (294)
T ss_dssp GEEESCGGGHHHHHHHSCSGGGSEEESSHHHHHHHHHHHH
T ss_pred ceEeChHHHHHHHHHHHchhcceEEeCCHHHHHHHHHHHH
No 19
>4KYZ_D Designed protein OR327; Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, domain insertion, DE NOVO PROTEIN; HET: MSE; 2.492A {synthetic construct}
Probab=25.87 E-value=2e+02 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred HHHHHHHHHHHcCCCcceeeC----CHHHHHHHHHH
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVA----SEKDAIDLISQ 54 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~----~~~dA~~LL~e 54 (119)
+.|++-|+.|++=|..++++. +..||++|+..
T Consensus 31 kaLkElv~~lrk~GAkri~i~Ita~~skeAe~Lka~ 66 (172)
T 4KYZ_D 31 KVLNELMDYIKKQGAKRVRISITARSSKEAYKFLAI 66 (172)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccCcHHHHHHHHH
No 20
>PF08955.14 ; BofC_C ; BofC C-terminal domain
Probab=25.47 E-value=2.5e+02 Score=18.32 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHcCCCcceeeCCHHHHHHHHHH
Q FD01543133_034 26 RLAVEAIGSGKNTNFRVASEKDAIDLISQ 54 (119)
Q Consensus 26 k~Av~~ik~ggk~Nfrv~~~~dA~~LL~e 54 (119)
....+.|++| +.+.|.++|.++|.+
T Consensus 49 ~~~~~~l~~G----i~~~s~~e~~~~le~ 73 (76)
T D5WW86_KYRT2/1 49 KGALDSLRRG----VRVDGREDYASILDT 73 (76)
T ss_pred HHHHHHHHcC----ceeCCHHHHHHHHHh
No 21
>1GXJ_A CHROMOSOME SEGREGATION SMC PROTEIN; CHROMOSOME SEGREGATION, SMC DIMERISATION DOMAIN, ANTI PARALLEL COILED COIL, SMC PROTEINS; 2.0A {THERMOTOGA MARITIMA} SCOP: d.215.1.1
Probab=24.46 E-value=3.8e+02 Score=18.56 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHHHhc
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLISQGR 56 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ear 56 (119)
+.|..|++.+-...-..+.+.+.++|..+|...+
T Consensus 44 ~~~~~a~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 77 (186)
T 1GXJ_A 44 EKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLK 77 (186)
T ss_dssp GGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCEEEeCCHHHHHHHHHHHH
No 22
>1MWQ_A HYPOTHETICAL PROTEIN HI0828; HI0828, YCII_HAEIN, hypothetical protein, structural genomics, Structure 2 Function Project, S2F, UNKNOWN FUNCTION; HET: MSE, 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=22.10 E-value=1.5e+02 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred eeeCCHHHHHHHHHH
Q FD01543133_034 40 FRVASEKDAIDLISQ 54 (119)
Q Consensus 40 frv~~~~dA~~LL~e 54 (119)
|.++|.++|.+|+++
T Consensus 66 ~~a~s~eea~~l~~~ 80 (101)
T 1MWQ_A 66 AQFENLQAAKDWAAQ 80 (101)
T ss_dssp EECSSHHHHHHHHHT
T ss_pred EEcCCHHHHHHHHhc
No 23
>4L51_B Transcriptional regulator LsrR; DNA transcriptional regulator, Phospho-AI-2 binding, DNA binding, TRANSCRIPTION REGULATOR, removed helix-turn-helix domain, SorC/DeoR family; HET: HSX; 1.9A {Escherichia coli} SCOP: c.124.1.0
Probab=22.07 E-value=2.1e+02 Score=22.62 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHcCCCcceeeCCHHHHHHHHHH
Q FD01543133_034 27 LAVEAIGSGKNTNFRVASEKDAIDLISQ 54 (119)
Q Consensus 27 ~Av~~ik~ggk~Nfrv~~~~dA~~LL~e 54 (119)
+|+..+-+++-.|..|-+...|++||.+
T Consensus 239 ~al~~~l~~~~~~~litD~~~A~~ll~~ 266 (266)
T 4L51_B 239 EAIAAAMKGGYINALVTDQDTAAAILRS 266 (266)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEEcHHHHHHHHcC
No 24
>3L51_A Structural maintenance of chromosomes protein 2; Structural Maintenance of Chromosomes (SMC), hinge domain, Cell cycle, Cell division, Cytoplasm, DNA condensation, Mitosis, Nucleus; HET: GOL, MSE; 1.506A {Mus musculus}
Probab=21.62 E-value=4e+02 Score=18.42 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCccCCCCHHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 15 LPVIRPGTKEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 15 l~vikpGTk~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
...|+...+.|..|++.+-...-..+.|.+.++|..+|+
T Consensus 22 ~~~i~~~~~~~~~a~e~~l~~~l~~~v~~~~~~~~~~~~ 60 (161)
T 3L51_A 22 ASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLE 60 (161)
T ss_dssp GGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHH
T ss_pred eecEEeCChHHHHHHHHHhccchhcEEeCCHHHHHHHHH
No 25
>7T2F_B HEEH mini protein HEEH_TK_rd5_0341; mini protein, DE NOVO PROTEIN, homodimer; NMR {Escherichia coli}
Probab=21.17 E-value=3.5e+02 Score=18.70 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred HHHHHHHHcCCCccee---eCCHHHHHHHHHHhcccc
Q FD01543133_034 26 RLAVEAIGSGKNTNFR---VASEKDAIDLISQGRGRM 59 (119)
Q Consensus 26 k~Av~~ik~ggk~Nfr---v~~~~dA~~LL~earg~m 59 (119)
+...++|+.+.+-||+ +.+.++|++++.+-|.-+
T Consensus 17 ~~~~k~leead~~~~~g~t~~~~~~~~~~~e~~~~~~ 53 (53)
T 7T2F_B 17 EDLKQALREGRKVNILGIEVTTEEQARRLIEFLRRFI 53 (53)
T ss_dssp HHHHHHHHTTCCEEETTEEECSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhcceeeecceeCCHHHHHHHHHHHHhhC
No 26
>4LBH_A 5-chloro-2-hydroxyhydroquinone dehydrochlorinase (TftG); LYASE; 1.75A {Burkholderia cepacia} SCOP: d.58.4.0
Probab=20.75 E-value=1.7e+02 Score=19.35 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred eeeCCHHHHHHHHHH
Q FD01543133_034 40 FRVASEKDAIDLISQ 54 (119)
Q Consensus 40 frv~~~~dA~~LL~e 54 (119)
|+++|.++|++++++
T Consensus 60 ~~~~s~~~a~~~~~~ 74 (100)
T 4LBH_A 60 MEAESWDEVHSFVEN 74 (100)
T ss_dssp EECSSHHHHHHHHHT
T ss_pred EEcCCHHHHHHHHHc
No 27
>PF03795.18 ; YCII ; YCII-related domain
Probab=20.45 E-value=1.9e+02 Score=18.11 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred eeeCCHHHHHHHHHH
Q FD01543133_034 40 FRVASEKDAIDLISQ 54 (119)
Q Consensus 40 frv~~~~dA~~LL~e 54 (119)
++++|.++|.+++++
T Consensus 56 ~~a~s~eea~~~~~~ 70 (88)
T Q9AJZ7_STRCO/1 56 LDLPDPAAARTFAFD 70 (88)
T ss_pred EEcCCHHHHHHHHhh
No 28
>PF21201.1 ; Tertiapin ; Tertiapin
Probab=20.13 E-value=51 Score=19.27 Aligned_cols=7 Identities=71% Similarity=1.607 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CCcceee
Q FD01543133_034 97 IPHVKWK 103 (119)
Q Consensus 97 lpHIKWk 103 (119)
+||..|+
T Consensus 10 iphmcwk 16 (21)
T TERT_APIME/1-2 10 IPHMCWK 16 (21)
T ss_pred echhhhh
No 29
>7DG5_D Structural maintenance of chromosomes protein 3; cohesin, Smc1, Smc3, hinge, DNA BINDING PROTEIN; 2.0A {Mus musculus}
Probab=20.07 E-value=4.7e+02 Score=18.64 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHHHcCCCcceeeCCHHHHHHHHH
Q FD01543133_034 23 KEWRLAVEAIGSGKNTNFRVASEKDAIDLIS 53 (119)
Q Consensus 23 k~Wk~Av~~ik~ggk~Nfrv~~~~dA~~LL~ 53 (119)
+.|..|++.+-...-..+.|.+.++|..++.
T Consensus 61 ~~~~~a~e~~lg~~l~~~vv~~~~~~~~~~~ 91 (213)
T 7DG5_D 61 PAFYTCVEVTAGNRLFYHIVDSDEVSTKILM 91 (213)
T ss_dssp GGGHHHHHHHHGGGGGCEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccceEEEeCCHHHHHHHHH