Query FD01845435_03730 RHS repeat family protein
Match_columns 80
No_of_seqs 24 out of 29
Neff 2.33471
Searched_HMMs 86581
Date Tue Feb 27 20:10:19 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8294880.hhr -oa3m ../results/8294880.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4JDE_A Protein F15E11.13; Beta 64.9 23 0.00027 25.2 3.7 56 10-80 45-101 (144)
2 PF08301.17 ; HCV_NS5a_1b ; Hep 53.1 17 0.00019 23.8 1.4 12 68-79 53-64 (97)
3 8TZL_E Peptidase M23; membrane 51.1 72 0.00083 22.7 4.2 67 12-79 301-376 (382)
4 4JDE_B Protein F15E11.1; Beta 41.1 50 0.00058 23.4 2.3 24 11-39 46-69 (146)
5 PF18457.5 ; PUD1_2 ; Up-Regula 39.9 1.7E+02 0.0019 22.2 4.9 58 11-75 44-103 (184)
6 PF05580.16 ; Peptidase_S55 ; S 37.8 34 0.00039 26.9 1.2 10 68-77 177-186 (209)
7 PF12672.11 ; DUF3793 ; Protein 37.1 27 0.00031 25.8 0.5 7 36-42 137-143 (175)
8 5LII_P Major capsid protein; p 33.8 2E+02 0.0023 23.6 4.8 43 9-55 336-379 (463)
9 8HC1_u Urease accessory protei 31.8 86 0.00099 24.0 2.4 34 39-77 137-171 (273)
10 8P34_A Microtubule-associated 30.6 36 0.00041 20.6 0.2 29 11-39 6-34 (94)
11 PF08741.14 ; YwhD ; YwhD famil 29.1 69 0.00079 25.0 1.6 23 55-77 16-42 (162)
12 1EU3_B SUPERANTIGEN SMEZ-2; be 28.2 1.3E+02 0.0015 23.5 2.8 31 9-44 163-194 (210)
13 PF01774.21 ; UreD ; UreD ureas 26.8 1.1E+02 0.0013 22.3 2.3 34 39-77 90-124 (202)
14 PF14784.10 ; ECSIT_C ; C-termi 22.5 88 0.001 22.1 1.0 9 66-74 13-21 (125)
15 PF16036.9 ; Chalcone_3 ; Chalc 22.2 3.4E+02 0.004 18.7 3.8 33 11-59 113-145 (169)
16 PF00418.23 ; Tubulin-binding ; 21.9 77 0.00089 13.5 0.5 16 9-24 14-29 (31)
17 8HCN_D Urease accessory protei 20.2 1.6E+02 0.0019 22.8 2.1 34 39-77 151-185 (282)
18 5LXX_A Dihydropyrimidinase-rel 20.2 1.8E+02 0.0021 21.1 2.2 27 51-77 409-464 (501)
19 2P8Z_S Elongation factor Tu-B; 20.1 58 0.00067 15.7 -0.2 20 50-69 1-20 (35)
No 1
>4JDE_A Protein F15E11.13; Beta sandwich, UNKNOWN FUNCTION; HET: CL; 1.9A {Caenorhabditis elegans}
Probab=64.94 E-value=23 Score=25.17 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred cCCCCEEEeeccCCCCCCCCCccCCCceeEEecCCCCCceeeeeecCCCcccceeccccce-EEcceeecCC
Q FD01845435_037 10 TKSGTTYKLDYHPGGNAKQPNIHGNDYWKVYRANSKGEDIVYGRIGHGGFENYDLIKDSPV-YVDGVLVNGG 80 (80)
Q Consensus 10 TKsG~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~~g~~~v~GRIghg~F~nYD~I~dSPV-yvDgvLmN~~ 80 (80)
.+++......|+.|- ..-+.|||.|--.+..+.. +..|..+- ..+. +++|.++|..
T Consensus 45 ~~~~~~~~V~Y~tG~-----~ttg~D~W~V~~~t~~g~~-------p~nf~~~~---~~~~~~~~g~~~~~~ 101 (144)
T 4JDE_A 45 EVKEIFKSVAYNTGF-----LTTGVDNWLVDGTMVQERT-------EVDNKGHQ---IGKKSYIEHAKFISD 101 (144)
T ss_dssp CEEEEEEEEEEEEST-----TCCCCEEEEEEEEEEEEEE-------EECTTSCB---CSCCEEEEEEEEEET
T ss_pred cEEcccEEEEEEcCC-----CCCCCcEEEEEEEEcceec-------CCcceeEE---eecceeeeccceecC
No 2
>PF08301.17 ; HCV_NS5a_1b ; Hepatitis C virus non-structural 5a domain 1b
Probab=53.09 E-value=17 Score=23.82 Aligned_cols=12 Identities=50% Similarity=0.590 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred cceEEcceeecC
Q FD01845435_037 68 SPVYVDGVLVNG 79 (80)
Q Consensus 68 SPVyvDgvLmN~ 79 (80)
+|++|||+.+..
T Consensus 53 ~~~~VDGv~v~~ 64 (97)
T POLG_GBVB/1963 53 AAVAVDGVQVQC 64 (97)
T ss_pred CcEEECCEEccC
No 3
>8TZL_E Peptidase M23; membrane protein, enzyme, TRANSPORT PROTEIN; HET: ADP;{Vibrio cholerae}
Probab=51.12 E-value=72 Score=22.74 Aligned_cols=67 Identities=16% Similarity=0.045 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCEEEeeccCCCCCCCCCccCCCceeEEecCCCCC---------ceeeeeecCCCcccceeccccceEEcceeecC
Q FD01845435_037 12 SGTTYKLDYHPGGNAKQPNIHGNDYWKVYRANSKGE---------DIVYGRIGHGGFENYDLIKDSPVYVDGVLVNG 79 (80)
Q Consensus 12 sG~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~~g~---------~~v~GRIghg~F~nYD~I~dSPVyvDgvLmN~ 79 (80)
+|......+.||.....---|+..|+.+|..-.... +.+.|..|..+...-..+.= .|..+|..+|+
T Consensus 301 ~G~v~~~~~~~~~g~~v~i~~~~~~~~~y~~~~~~~~~~g~~v~~g~~ig~~g~~~~~~~~~l~~-e~~~~~~~~~p 376 (382)
T 8TZL_E 301 PGTIVFAEYLRGYGLVVLLDHGKGDMTLYGFNQTLLKKEGDKVTTGETIALAGDTGGQSRPALYF-EIRRNSRAENP 376 (382)
T ss_dssp CEEEEECSEETTTEEEEEEECSTTEEEEEEEEEEECSCTTCEECTTCEEEEEBCTTTCSSCEEEE-EEEETTEEECG
T ss_pred CeEEEEEEecCCccEEEEEEcCCCeEEEEeeecceecCCCCEEcCCCeeEEccCCCCCCCCeeeE-EEEeCCEEcCc
No 4
>4JDE_B Protein F15E11.1; Beta sandwich, UNKNOWN FUNCTION; HET: CL; 1.9A {Caenorhabditis elegans}
Probab=41.11 E-value=50 Score=23.35 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCCCEEEeeccCCCCCCCCCccCCCceeE
Q FD01845435_037 11 KSGTTYKLDYHPGGNAKQPNIHGNDYWKV 39 (80)
Q Consensus 11 KsG~~y~LDYhPgG~~~q~~iH~~dYWKV 39 (80)
+++......|+.|- ..-+.|||.|
T Consensus 46 ~~~~~~~V~Y~tG~-----~ttg~D~W~v 69 (146)
T 4JDE_B 46 SAQILEKVHYNTGP-----FTTGTDNWKV 69 (146)
T ss_dssp EEEEEEEEEEEEST-----TCCCCEEEEE
T ss_pred EecccEEEEEeCCC-----CCCCCCeEEE
No 5
>PF18457.5 ; PUD1_2 ; Up-Regulated in long-lived daf-2
Probab=39.92 E-value=1.7e+02 Score=22.21 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred CCCCEEEeeccCCCCCCCCCccCCCceeEEecCCCCCceeeeeecCCCcccceecccc--ceEEcce
Q FD01845435_037 11 KSGTTYKLDYHPGGNAKQPNIHGNDYWKVYRANSKGEDIVYGRIGHGGFENYDLIKDS--PVYVDGV 75 (80)
Q Consensus 11 KsG~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~~g~~~v~GRIghg~F~nYD~I~dS--PVyvDgv 75 (80)
++.......|+.|- ..-+.|||+|--.+.++ +.+==.-+..|...-...|. |.+|.|+
T Consensus 44 ~~~~~~~V~Y~tG~-----~ttg~D~W~V~~~t~dg--~~~~~t~p~nf~c~id~~d~~~~~~i~~v 103 (184)
T A0A2A9P214_9HY 44 VSSDHMVVQYNTGL-----GTIGQDWWLLSWYDEGL--THFHVTNPNNFRGVFDFLEDQAPAAMITA 103 (184)
T ss_pred eecCcEEEEEEcCC-----CCCCCCEEEEEEEEcCC--cEEEEECCCCceeeeccchhcCCceeEEe
No 6
>PF05580.16 ; Peptidase_S55 ; SpoIVB peptidase S55
Probab=37.82 E-value=34 Score=26.93 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred cceEEcceee
Q FD01845435_037 68 SPVYVDGVLV 77 (80)
Q Consensus 68 SPVyvDgvLm 77 (80)
||||.||+|+
T Consensus 177 SPi~q~gkLi 186 (209)
T R7B468_9CLOT/2 177 SPIIQNGKLI 186 (209)
T ss_pred CceEeCCEEe
No 7
>PF12672.11 ; DUF3793 ; Protein of unknown function (DUF3793)
Probab=37.12 E-value=27 Score=25.75 Aligned_cols=7 Identities=57% Similarity=1.189 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred ceeEEec
Q FD01845435_037 36 YWKVYRA 42 (80)
Q Consensus 36 YWKVyr~ 42 (80)
|||||-+
T Consensus 137 yWKVY~d 143 (175)
T C4Z499_LACE2/1 137 VWKVYCD 143 (175)
T ss_pred cEEecCC
No 8
>5LII_P Major capsid protein; polyvalent staphylococcal bactoriophage, Myoviridae, tail sheath, tail contraction, virus like particle; 3.8A {Staphylococcus phage 812}
Probab=33.75 E-value=2e+02 Score=23.65 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred ecCCCCEEEeeccCCCCCCCCCccCCCceeEEecCC-CCCceeeeeec
Q FD01845435_037 9 TTKSGTTYKLDYHPGGNAKQPNIHGNDYWKVYRANS-KGEDIVYGRIG 55 (80)
Q Consensus 9 TTKsG~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~-~g~~~v~GRIg 55 (80)
.+-+|+...|...|++. .-....|++|||... .+.....+||+
T Consensus 336 v~~~~~~v~ltit~~~~----~~~~~~~y~iyR~~~~~~~~~~i~~v~ 379 (463)
T 5LII_P 336 VSNVDDGVKLSINVNAM----YQQQPQFVSIYRQGKETGMYFLIKRVP 379 (463)
T ss_dssp TTSTTCCCCCCCEEECC----CCCSSSCCCEECBCCCSCSSSCCCCCC
T ss_pred eecCCCcEEEEEecccc----cCCCCeEEEEEeecCCCCcEEEEEEEc
No 9
>8HC1_u Urease accessory protein UreH; Urease, activation complex, UreA, UreB, UreC, UreF, UreD, UreH, Helicobacter pylori, HYDROLASE; 2.3A {Helicobacter pylori 26695}
Probab=31.84 E-value=86 Score=24.00 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEecCCCCCceeeeeecCCCcccceeccccc-eEEcceee
Q FD01845435_037 39 VYRANSKGEDIVYGRIGHGGFENYDLIKDSP-VYVDGVLV 77 (80)
Q Consensus 39 Vyr~~~~g~~~v~GRIghg~F~nYD~I~dSP-VyvDgvLm 77 (80)
++.+ -.+.||.++|+--.|..+..+- |++||.|+
T Consensus 137 ~~~e-----~~~~GR~a~gE~~~~~~~~s~~~i~~~g~li 171 (273)
T 8HC1_u 137 LYSA-----IIVAGRVARNELFKFNRLHTKISILQDEKPI 171 (273)
T ss_dssp EEEE-----EEECSCGGGTCCSCSSEEEEEEEEEESSSEE
T ss_pred EEEE-----EEecCCcccCCccCccEEEeEEEEEECCEEE
No 10
>8P34_A Microtubule-associated protein tau; DeltaK281, Tau, Amyloid filament, Cross-beta-sheet, PROTEIN FIBRIL; 2.61A {Homo sapiens}
Probab=30.57 E-value=36 Score=20.58 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCCEEEeeccCCCCCCCCCccCCCceeE
Q FD01845435_037 11 KSGTTYKLDYHPGGNAKQPNIHGNDYWKV 39 (80)
Q Consensus 11 KsG~~y~LDYhPgG~~~q~~iH~~dYWKV 39 (80)
|-|.+.-+.|.|||...+-.....+++.+
T Consensus 6 kvgS~~N~~~~PgGG~v~i~~~~~~~~~~ 34 (94)
T 8P34_A 6 KIGSTENLKHQPGGGKVQIVYKPVDLSKV 34 (94)
T ss_dssp CSSCCCCCCSSTTTCCCCCCCCCCCCCCC
T ss_pred CCCCcccCCCCCCCCceeEeeeecCHHHc
No 11
>PF08741.14 ; YwhD ; YwhD family
Probab=29.08 E-value=69 Score=24.98 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred cCCCcc--cceeccccceEEc--ceee
Q FD01845435_037 55 GHGGFE--NYDLIKDSPVYVD--GVLV 77 (80)
Q Consensus 55 ghg~F~--nYD~I~dSPVyvD--gvLm 77 (80)
|||+|. ..++-.=|||+|| |..+
T Consensus 16 ghgg~g~G~~~L~nls~ViID~~~~~a 42 (162)
T E6TY35_EVAC2/1 16 GHGGYGAGVLNLNNVSPVFIDVEEGEA 42 (162)
T ss_pred CCCccceeeeecCCeeeEEEECCCCEE
No 12
>1EU3_B SUPERANTIGEN SMEZ-2; beta grasp, OB fold, superantigen fold, IMMUNE SYSTEM; HET: PO4; 1.68A {Streptococcus pyogenes} SCOP: b.40.2.2, l.1.1.1, d.15.6.1
Probab=28.18 E-value=1.3e+02 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred ecCC-CCEEEeeccCCCCCCCCCccCCCceeEEecCC
Q FD01845435_037 9 TTKS-GTTYKLDYHPGGNAKQPNIHGNDYWKVYRANS 44 (80)
Q Consensus 9 TTKs-G~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~ 44 (80)
.+|+ |+.|..|-.+-. ..|..+|.++|+++.
T Consensus 163 ~~~d~~~~~~~DL~~~~-----~~~~~~~l~~Y~dn~ 194 (210)
T 1EU3_B 163 HTNDNSDKYSFDLFYVG-----YRDKESIFKVYKDNK 194 (210)
T ss_dssp EESSCCCCEEEETTCCT-----TSSHHHHHGGGTTCC
T ss_pred EeCCCCCeEEEECccCC-----CCChhhhheeeeCCe
No 13
>PF01774.21 ; UreD ; UreD urease accessory protein
Probab=26.75 E-value=1.1e+02 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEecCCCCCceeeeeecCCCcccceeccccc-eEEcceee
Q FD01845435_037 39 VYRANSKGEDIVYGRIGHGGFENYDLIKDSP-VYVDGVLV 77 (80)
Q Consensus 39 Vyr~~~~g~~~v~GRIghg~F~nYD~I~dSP-VyvDgvLm 77 (80)
++.+ -.+.||+++|+--.|+.+...- |++||.|+
T Consensus 90 i~~d-----~~~~GR~~~gE~~~~~~~~s~~~i~~~~~l~ 124 (202)
T F0JE30_9DELT/5 90 FGWE-----VICLGLPASNAPFDRGFFVQTLEIYRDGEPV 124 (202)
T ss_pred EEEE-----EeeccCCccCCCCCCCeEEEEEEEEECCEEE
No 14
>PF14784.10 ; ECSIT_C ; C-terminal domain of the ECSIT protein
Probab=22.49 E-value=88 Score=22.08 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cccceEEcc
Q FD01845435_037 66 KDSPVYVDG 74 (80)
Q Consensus 66 ~dSPVyvDg 74 (80)
.++||||||
T Consensus 13 ~~~pv~VeG 21 (125)
T A0A212F5G8_DAN 13 PDIPLVIKG 21 (125)
T ss_pred CCCCEEEeC
No 15
>PF16036.9 ; Chalcone_3 ; Chalcone isomerase-like
Probab=22.19 E-value=3.4e+02 Score=18.71 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCCCEEEeeccCCCCCCCCCccCCCceeEEecCCCCCceeeeeecCCCc
Q FD01845435_037 11 KSGTTYKLDYHPGGNAKQPNIHGNDYWKVYRANSKGEDIVYGRIGHGGF 59 (80)
Q Consensus 11 KsG~~y~LDYhPgG~~~q~~iH~~dYWKVyr~~~~g~~~v~GRIghg~F 59 (80)
+.|+++.+.|.|+|. -.++.+ +...|.|....|
T Consensus 113 ~~Gd~~~~~~~~~~~-----------~~~~~n-----g~~~~~i~~~~~ 145 (169)
T Q2SJX5_HAHCH/2 113 KKGDTAVVEYIPGVG-----------AQVWLD-----GRDRGVIPGKKL 145 (169)
T ss_pred CCCCEEEEEEcCCCe-----------EEEEEC-----CEEEEEeCChHH
No 16
>PF00418.23 ; Tubulin-binding ; Tau and MAP protein, tubulin-binding repeat
Probab=21.90 E-value=77 Score=13.47 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred ecCCCCEEEeeccCCC
Q FD01845435_037 9 TTKSGTTYKLDYHPGG 24 (80)
Q Consensus 9 TTKsG~~y~LDYhPgG 24 (80)
..|.+....+.+.|+|
T Consensus 14 ~~~~~s~~~~~~~p~g 29 (31)
T W5MBA0_LEPOC/1 14 QSKCGSKDNLKHSPRG 29 (31)
T ss_pred CCCCCCcCCCCCCCCC
No 17
>8HCN_D Urease accessory protein UreD; Urease, UreA, UreB, UreC, UreF, UreD, Klebsiella pneumoniae, HYDROLASE; 2.7A {Klebsiella pneumoniae}
Probab=20.25 E-value=1.6e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred EEecCCCCCceeeeeecCCCcccceeccccc-eEEcceee
Q FD01845435_037 39 VYRANSKGEDIVYGRIGHGGFENYDLIKDSP-VYVDGVLV 77 (80)
Q Consensus 39 Vyr~~~~g~~~v~GRIghg~F~nYD~I~dSP-VyvDgvLm 77 (80)
++.+ -.+.||.+.|+--.|..+..+- |+.||.|+
T Consensus 151 i~~E-----~~~~GR~~~gE~f~~~~~~~~~~i~~~g~ll 185 (282)
T 8HCN_D 151 LAWD-----LLCLGRPVIGETFSHGTLSNRLEVWVDDEPL 185 (282)
T ss_dssp EEEE-----EEEESBTTTTBCCCSCCEEEEEEEEESSCEE
T ss_pred EEEE-----EEccCCCcCCCCCCCCeEEEEEEEEECCEEE
No 18
>5LXX_A Dihydropyrimidinase-related protein 2; TIM barrel, tetramer, CRMP, transcription; HET: SO4, BTB; 1.25A {Homo sapiens}
Probab=20.22 E-value=1.8e+02 Score=21.14 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred eeeecCCCcccceeccccc-----------------------------eEEcceee
Q FD01845435_037 51 YGRIGHGGFENYDLIKDSP-----------------------------VYVDGVLV 77 (80)
Q Consensus 51 ~GRIghg~F~nYD~I~dSP-----------------------------VyvDgvLm 77 (80)
.|+|..|..-.+-.+...| |++||+++
T Consensus 409 ~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~v 464 (501)
T 5LXX_A 409 KGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIV 464 (501)
T ss_dssp SSCCCTTSBCCEEEEEEEEEEECCTTTSSSSCSCCTTTTCEEEEEEEEEEETTEEE
T ss_pred CCCCCCCCCCCEEEECCCccEEeChhhcCCCCCccCcCCceeccceEEEEECCEEE
No 19
>2P8Z_S Elongation factor Tu-B; elongation, translocation, GTPase, 80S ribosome, TRANSLATION; HET: DDE, GNP, APR, SO1; 8.9A {Saccharomyces cerevisiae}
Probab=20.11 E-value=58 Score=15.72 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred eeeeecCCCcccceeccccc
Q FD01845435_037 50 VYGRIGHGGFENYDLIKDSP 69 (80)
Q Consensus 50 v~GRIghg~F~nYD~I~dSP 69 (80)
|+++-+-+.+..|+.|...|
T Consensus 1 ~la~~~~~~~~~~~~i~~~~ 20 (35)
T 2P8Z_S 1 TAAENPNVEVKDYGDIDKAP 20 (35)
T ss_dssp CTTTCTTBCCCCGGGTSCSH
T ss_pred CCcCCCCCcccCHHHhhcCh