Query FD01847913_04013 type IV secretion protein Rhs
Match_columns 111
No_of_seqs 10 out of 13
Neff 2.23316
Searched_HMMs 86581
Date Tue Feb 27 20:09:00 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2289228.hhr -oa3m ../results/2289228.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7ZHL_A RHS repeat protein; bac 74.3 24 0.00028 23.6 5.2 53 15-75 7-59 (116)
2 5ZDH_Q Type II secretion syste 70.2 5.8 6.7E-05 28.0 1.6 42 12-54 63-106 (112)
3 PF16549.9 ; T2SSS_2 ; Type II 69.7 7.5 8.7E-05 26.6 2.0 42 12-54 60-103 (104)
4 3BJN_A Transcriptional regulat 36.9 97 0.0011 20.7 3.0 30 21-50 99-128 (165)
5 PF13652.10 ; QSregVF ; Putativ 34.0 45 0.00052 22.3 1.1 43 12-54 65-109 (110)
6 4HZ9_B Putative periplasmic pr 33.7 1.4E+02 0.0016 21.5 3.6 83 7-97 50-142 (150)
7 4FTF_A Alternate secretin path 32.0 45 0.00052 23.6 1.0 23 12-34 65-87 (112)
8 1ONL_A glycine cleavage system 30.2 92 0.0011 19.6 2.0 22 9-30 105-126 (128)
9 PF13986.10 ; DUF4224 ; Domain 29.6 96 0.0011 18.9 2.0 29 21-50 17-45 (45)
10 3EYE_A PTS system N-acetylgala 27.8 1.7E+02 0.002 22.5 3.4 64 18-83 88-159 (168)
11 1YSP_A Transcriptional regulat 27.8 2E+02 0.0023 19.5 3.4 30 21-50 100-129 (181)
12 PF07862.15 ; Nif11 ; Nif11 dom 26.5 1.8E+02 0.0021 16.6 2.7 24 15-38 23-51 (51)
13 PF16824.9 ; CBM_26 ; C-termina 26.2 90 0.001 23.4 1.7 17 65-81 34-50 (130)
14 5HPF_C p-hydroxybenzoate hydro 25.9 2.1E+02 0.0024 19.4 3.2 30 21-50 105-134 (178)
15 3KZT_B uncharacterized protein 25.9 3.7E+02 0.0043 18.8 5.0 77 10-97 52-138 (143)
16 PF15633.10 ; Tox-ART-HYD1 ; HY 25.5 3E+02 0.0035 17.6 6.1 67 15-81 1-80 (101)
17 3NPD_A putative secreted prote 25.0 99 0.0011 21.1 1.6 43 12-54 67-111 (118)
18 3WDN_A Glycine cleavage system 24.6 1.2E+02 0.0014 19.1 1.9 22 9-30 101-122 (125)
19 PF18096.5 ; Thump_like ; THUMP 24.1 2E+02 0.0023 18.6 2.8 20 52-71 37-57 (73)
20 PF07879.15 ; PHB_acc_N ; PHB/P 22.8 94 0.0011 21.2 1.2 31 16-46 16-46 (61)
21 PF14066.10 ; DUF4256 ; Protein 22.7 1.5E+02 0.0018 24.3 2.5 42 17-69 105-146 (173)
22 PF14056.10 ; DUF4250 ; Domain 21.0 1.3E+02 0.0015 18.8 1.5 16 25-40 39-54 (55)
23 6I2V_A Uncharacterized protein 20.5 1.1E+02 0.0013 22.7 1.3 22 13-34 68-89 (114)
24 PF04365.17 ; BrnT_toxin ; Ribo 20.5 1.2E+02 0.0014 18.5 1.2 18 18-35 1-18 (79)
No 1
>7ZHL_A RHS repeat protein; bacterial toxin, secreted toxin, T6SS, ADP-ribosyltransferase, translation inhibitor, TOXIN; 2.2A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=74.33 E-value=24 Score=23.56 Aligned_cols=53 Identities=28% Similarity=0.480 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HhhcCCHHHHHHHHHcCcccCCCCCCCccceeEEeeCCCChHHHHHHHccCCCcEEEEeec
Q FD01847913_040 15 VRRFMSKAEYKDFIKNGFEFNPADSRGGISVTSVKVDPKNPDAIKRSTGALGADYYVDIDT 75 (111)
Q Consensus 15 VRRf~Sk~eyk~f~K~GftfDP~d~r~GISaTst~i~p~nPD~I~~~TgAlgADyYVDId~ 75 (111)
|.|.|+++||..+...|.--....+ ++....|.++++.... +....+||..++
T Consensus 7 vgr~ms~~e~~~m~~tg~v~~~~~g------~t~v~~~~~~~~~~~~--~~~g~~~vefdv 59 (116)
T 7ZHL_A 7 VGRWMGPAEYQQMLDTGTVVQSSTG------TTHVAYPADIDAFGKQ--AKNGAMYVEFDV 59 (116)
T ss_dssp EEEEECHHHHHHHHHHTBCCCCTTS------EEEEBSSCCTTSSTTT--SCTTCEEEEEEE
T ss_pred eccccCHHHHHHHHhhCCeeecCCC------ceeeecCcChhhhhhh--ccCCceEEEeec
No 2
>5ZDH_Q Type II secretion system lipoprotein; Pilotin, Secretin, PROTEIN TRANSPORT; 3.2A {Escherichia coli O78:H11 (strain H10407 / ETEC)}
Probab=70.24 E-value=5.8 Score=28.02 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CchHhhcCCHHHHHHHHHcCcccCC--CCCCCccceeEEeeCCCC
Q FD01847913_040 12 PGIVRRFMSKAEYKDFIKNGFEFNP--ADSRGGISVTSVKVDPKN 54 (111)
Q Consensus 12 p~vVRRf~Sk~eyk~f~K~GftfDP--~d~r~GISaTst~i~p~n 54 (111)
|.++.+||+..|.+.|.+.|++|.- .+. .|-..++..|.+.+
T Consensus 63 ~~~~~~~C~~~e~r~ll~~Gv~y~~~y~d~-~g~~i~~~~Is~~~ 106 (112)
T 5ZDH_Q 63 TSYQRQMCADPTVKLMLTEGINYSITINDT-RTGNQYQRKLDRTT 106 (112)
T ss_dssp HHHHHHHHHCTTHHHHTTTTCCCEEEEC------CCEEEECCTTT
T ss_pred HHHHHhhcCCHHHHHHHhcCCEEEEEEECC-CCCEEEEEEecHhh
No 3
>PF16549.9 ; T2SSS_2 ; Type II secretion system (T2SS) pilotin, S protein
Probab=69.68 E-value=7.5 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CchHhhcCCHHHHHHHHHcCcccCC--CCCCCccceeEEeeCCCC
Q FD01847913_040 12 PGIVRRFMSKAEYKDFIKNGFEFNP--ADSRGGISVTSVKVDPKN 54 (111)
Q Consensus 12 p~vVRRf~Sk~eyk~f~K~GftfDP--~d~r~GISaTst~i~p~n 54 (111)
|.++.++|+..|.+.|.+.|+.|.= .+. .|-..++..|.+.+
T Consensus 60 ~~i~~~~C~~~~~~~~l~~Gv~y~y~y~d~-~g~~i~~~~It~~d 103 (104)
T E3BNJ5_9VIBR/2 60 AQSVNTYCSNKDTKANLDLGIHYRIKIRNS-RGQLMSDELVTSQK 103 (104)
T ss_pred HHHHHHhcCCHhHHHHHhcCceEEEEEECC-CCCEEEEEEecccc
No 4
>3BJN_A Transcriptional regulator, putative; putative transcriptional regulator IclR, Vibrio cholerae, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural; HET: MSE; 1.65A {Vibrio cholerae O1 biovar eltor str. N16961}
Probab=36.93 E-value=97 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHcCcccCCCCCCCccceeEEee
Q FD01847913_040 21 KAEYKDFIKNGFEFNPADSRGGISVTSVKV 50 (111)
Q Consensus 21 k~eyk~f~K~GftfDP~d~r~GISaTst~i 50 (111)
.++++++++.||.+++...+.|+++-++-|
T Consensus 99 ~~~~~~~r~~g~~~~~~~~~~~~~~ia~pv 128 (165)
T 3BJN_A 99 QSEFEKIRRHGYAVSTSEIDPGVSGISAPV 128 (165)
T ss_dssp HHHHHHHHHHTSEEEESSSSTTEEEEEEEE
T ss_pred HHHHHHHHHhCcEEEcccccCCeEEEEeeE
No 5
>PF13652.10 ; QSregVF ; Putative quorum-sensing-regulated virulence factor
Probab=34.01 E-value=45 Score=22.29 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CchHhhcCCHHHHHHHHHcCcccCCCCCCC--ccceeEEeeCCCC
Q FD01847913_040 12 PGIVRRFMSKAEYKDFIKNGFEFNPADSRG--GISVTSVKVDPKN 54 (111)
Q Consensus 12 p~vVRRf~Sk~eyk~f~K~GftfDP~d~r~--GISaTst~i~p~n 54 (111)
+.++..+|+..+++.|.++|+++.=.-... |-...+.+|.|.+
T Consensus 65 ~~~~~~~C~~~~~~~~~~~G~~i~y~Y~~~~~g~~l~~~~i~~~d 109 (110)
T S6AHZ0_PSERE/2 65 AQLGASVCRNTGYRQLLARGAGLRYEFSEYKTNRPVSSERFTARD 109 (110)
T ss_pred HHHHHhhccCHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEEehhh
No 6
>4HZ9_B Putative periplasmic protein; protein-protein complex, endopeptidase, periplasmic space, HYDROLASE; 2.4A {Ralstonia pickettii}
Probab=33.73 E-value=1.4e+02 Score=21.52 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCCCCCchHhhcCCHHHHHHHHHc------CcccCCCCCCCccce----eEEeeCCCChHHHHHHHccCCCcEEEEeecC
Q FD01847913_040 7 GVPQNPGIVRRFMSKAEYKDFIKN------GFEFNPADSRGGISV----TSVKVDPKNPDAIKRSTGALGADYYVDIDTT 76 (111)
Q Consensus 7 g~p~np~vVRRf~Sk~eyk~f~K~------GftfDP~d~r~GISa----Tst~i~p~nPD~I~~~TgAlgADyYVDId~~ 76 (111)
+.|.+....++|.|++=++.+++. ++.+||--..+-... .+.++.+...+ ...|-++|.+. .
T Consensus 50 ~~p~~~~~~~~y~S~~l~~~l~~~~~~~~~~~d~D~f~~~QD~~~~~~~~~~~v~~~~~~-------~~~a~V~v~~~-~ 121 (150)
T 4HZ9_B 50 TYPLSEPDIERYVATDTVGRLRNDYAHAGPPNGVDYFLKVQDYDSRDWLAHIQVQRALML-------GDVAVVPVSFG-S 121 (150)
T ss_dssp CCGGGSGGGGGTBCHHHHHHHHHHHHTTCSGGGSCTTTCCSCCCHHHHHHCEEECCCEEE-------TTEEEEEEEEC-S
T ss_pred CCCCChHHHHHhcCHHHHHHHHHHHhcCCCCCCccceecccCCCcchHHhceEEEEEEEe-------CCEEEEEEEeC-C
Q ss_pred CCeeeeecccCCCccccEecc
Q FD01847913_040 77 NKNVELKGKTKGGVMDWKIKD 97 (111)
Q Consensus 77 ~kkv~~k~~TKgG~~d~KI~~ 97 (111)
....+++=..+..-..|||.+
T Consensus 122 ~~~~~~~~~l~ke~g~WkIdd 142 (150)
T 4HZ9_B 122 QDPVHVLVFLKRVDATWKIIK 142 (150)
T ss_dssp SSCEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEEEECCEEEEEE
No 7
>4FTF_A Alternate secretin pathway subunit S (VC395_1821, VC1703); pilotin, lipoprotein, secretin, protein secretion, PfamB PB000779, secretin binding, outer membrane, PROTEIN TRANSPORT; HET: ACT; 1.48A {Vibrio cholerae}
Probab=31.99 E-value=45 Score=23.60 Aligned_cols=23 Identities=13% Similarity=0.379 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CchHhhcCCHHHHHHHHHcCccc
Q FD01847913_040 12 PGIVRRFMSKAEYKDFIKNGFEF 34 (111)
Q Consensus 12 p~vVRRf~Sk~eyk~f~K~Gftf 34 (111)
|.++-++|+..|.+.|...|+.|
T Consensus 65 ~~~~~~~C~~~~~~~~l~~Gv~y 87 (112)
T 4FTF_A 65 QSAVSSFCANKDIRSNLDVGISY 87 (112)
T ss_dssp HHHHHHHHHSHHHHHHHHHTCEE
T ss_pred HHHHHhhcCCHHHHHHHhcCCEE
No 8
>1ONL_A glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, oxidoreductase; 2.5A {Thermus thermophilus} SCOP: b.84.1.1
Probab=30.19 E-value=92 Score=19.57 Aligned_cols=22 Identities=14% Similarity=0.534 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred CCCCchHhhcCCHHHHHHHHHc
Q FD01847913_040 9 PQNPGIVRRFMSKAEYKDFIKN 30 (111)
Q Consensus 9 p~np~vVRRf~Sk~eyk~f~K~ 30 (111)
|.++..+..|++.++|+.+.++
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~ 126 (128)
T 1ONL_A 105 PRDMGDLDELLDAGGYQEVLES 126 (128)
T ss_dssp ESCGGGGGGSBCHHHHHHHHHH
T ss_pred eCChhHHHhhcCHHHHHHHHhh
No 9
>PF13986.10 ; DUF4224 ; Domain of unknown function (DUF4224)
Probab=29.58 E-value=96 Score=18.91 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHcCcccCCCCCCCccceeEEee
Q FD01847913_040 21 KAEYKDFIKNGFEFNPADSRGGISVTSVKV 50 (111)
Q Consensus 21 k~eyk~f~K~GftfDP~d~r~GISaTst~i 50 (111)
.+..+.|+++||+|-++.. +-+-+|-..+
T Consensus 17 ~~q~~wL~~~gi~~~~~~~-G~p~v~r~~~ 45 (45)
T C5A9Q5_BURGB/2 17 SKQIEALRRMGVPFLVNAC-GRAVVARSAI 45 (45)
T ss_pred HHHHHHHHHCCCCEeECCC-CCEEEehhcC
No 10
>3EYE_A PTS system N-acetylgalactosamine-specific IIB component 1; STRUCTURAL GENOMICS, PHOSPHOTRANSFERASE, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC; 1.45A {Escherichia coli O157:H7} SCOP: c.38.1.0
Probab=27.84 E-value=1.7e+02 Score=22.53 Aligned_cols=64 Identities=9% Similarity=0.294 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred cCCHHHHHHHHHcCcccCCCCCCCcccee--------EEeeCCCChHHHHHHHccCCCcEEEEeecCCCeeeee
Q FD01847913_040 18 FMSKAEYKDFIKNGFEFNPADSRGGISVT--------SVKVDPKNPDAIKRSTGALGADYYVDIDTTNKNVELK 83 (111)
Q Consensus 18 f~Sk~eyk~f~K~GftfDP~d~r~GISaT--------st~i~p~nPD~I~~~TgAlgADyYVDId~~~kkv~~k 83 (111)
|.|.+++..+.+.|+.++--.- +|++.. ++.+.+.+-++++++... |...|+-.--..+.+.+.
T Consensus 88 ~~~~~~~~~l~~~G~~i~~ini-G~~~~~~g~~~v~~~v~l~~~d~~~l~~l~~~-Gv~v~~q~~P~d~~~~~~ 159 (168)
T 3EYE_A 88 CRTPQTVRKLVEGGIDLKDVNV-GNMHFSEGKKQISSKVYVDDQDLTDLRFIKQR-GVNVFIQDVPGDQKEQIP 159 (168)
T ss_dssp ESSHHHHHHHHHTTCCCCEEEE-CCBCCCTTCEEEETTEEECHHHHHHHHHHHHT-TCEEEECSSTTSCCBCCC
T ss_pred ECCHHHHHHHHHCCCCCCEEEE-CCCCCCCCCEEeCCceEECHHHHHHHHHHHHc-CCEEEEEeCCCCCcccCC
No 11
>1YSP_A Transcriptional regulator kdgR; transcriptional regulator, KdgR, IclR, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; 1.8A {Escherichia coli} SCOP: d.110.2.0, l.1.1.1
Probab=27.80 E-value=2e+02 Score=19.46 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHcCcccCCCCCCCccceeEEee
Q FD01847913_040 21 KAEYKDFIKNGFEFNPADSRGGISVTSVKV 50 (111)
Q Consensus 21 k~eyk~f~K~GftfDP~d~r~GISaTst~i 50 (111)
.+++..+++.||-+++.....|++.-++-|
T Consensus 100 ~~~l~~~r~~g~~~~~~~~~~~~~~ia~pv 129 (181)
T 1YSP_A 100 LPVLDQVREQGYGEDNEEQEEGLRCIAVPV 129 (181)
T ss_dssp HHHHHHHHHHTCEEEESSSSTTBEEEEEEE
T ss_pred HHHHHHHHHhCCccccccccCCeeEEEEEE
No 12
>PF07862.15 ; Nif11 ; Nif11 domain
Probab=26.52 E-value=1.8e+02 Score=16.58 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HhhcCCHHH-----HHHHHHcCcccCCCC
Q FD01847913_040 15 VRRFMSKAE-----YKDFIKNGFEFNPAD 38 (111)
Q Consensus 15 VRRf~Sk~e-----yk~f~K~GftfDP~d 38 (111)
+....+.++ ....+++||.|.+.+
T Consensus 23 l~~~~~~~~~~~~~~~~a~~~G~~ft~~e 51 (51)
T B2JAK5_NOSP7/1 23 LGATENTDSFNELAVRLGQDNGYNFTIQE 51 (51)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCcccCC
No 13
>PF16824.9 ; CBM_26 ; C-terminal carbohydrate-binding module
Probab=26.17 E-value=90 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CCCcEEEEeecCCCeee
Q FD01847913_040 65 LGADYYVDIDTTNKNVE 81 (111)
Q Consensus 65 lgADyYVDId~~~kkv~ 81 (111)
.+.+||+||..++..++
T Consensus 34 ~~~~~~ldl~fsdp~vk 50 (130)
T ALGX_PSESM/346 34 RNGSNQIDIRFDDTSVK 50 (130)
T ss_pred cCCceEEEEEeCCCCCC
No 14
>5HPF_C p-hydroxybenzoate hydroxylase transcriptional activator; Transcription factor, ligand binding domain, TRANSCRIPTION; HET: PO4, MSE, GOL; 2.309A {Acinetobacter baylyi str. ADP1}
Probab=25.91 E-value=2.1e+02 Score=19.41 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHcCcccCCCCCCCccceeEEee
Q FD01847913_040 21 KAEYKDFIKNGFEFNPADSRGGISVTSVKV 50 (111)
Q Consensus 21 k~eyk~f~K~GftfDP~d~r~GISaTst~i 50 (111)
.+++.++++.||-++......|++.-++-|
T Consensus 105 ~~~~~~~r~~g~~~~~~~~~~g~~~ia~pv 134 (178)
T 5HPF_C 105 LETLDAVRQSDYCLSTEEHELGVIAIAVPV 134 (178)
T ss_dssp HHHHHHHHHHTCEEEESSSSTTEEEEEEEE
T ss_pred HHHHHHHHhhCcEEecccccCCeEEEEEEE
No 15
>3KZT_B uncharacterized protein; Protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2; HET: SO4, EDO, MSE; 2.1A {Bacteroides thetaiotaomicron}
Probab=25.88 E-value=3.7e+02 Score=18.84 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCCchHhhcCCHHHHHHHHHc--CcccCCCCCCCcccee---EEeeCCCChHHHHHHHccCCCcEEEEeecCC-----Ce
Q FD01847913_040 10 QNPGIVRRFMSKAEYKDFIKN--GFEFNPADSRGGISVT---SVKVDPKNPDAIKRSTGALGADYYVDIDTTN-----KN 79 (111)
Q Consensus 10 ~np~vVRRf~Sk~eyk~f~K~--GftfDP~d~r~GISaT---st~i~p~nPD~I~~~TgAlgADyYVDId~~~-----kk 79 (111)
..+...+.|+|++-++.|++. ++.|||--..+..... +..+.+ ..++-+.|.+.... ..
T Consensus 52 ~~~~~~~~~~S~~l~~~l~~~~~~~d~D~~~~~qd~~~~~~~~~~i~~-----------~~~~~~~V~~~~~~~~~~~~~ 120 (143)
T 3KZT_B 52 LGDSIKQKFLTKELIEKVDRLIEATDADPIIRAQDLGENDMKTLSVKH-----------LNDNWYEVNYTSAKGSQYERA 120 (143)
T ss_dssp HHHHHHHHHBCHHHHHHHHHHHHHSSSBTTTTBSSCCTTSGGGCEEEE-----------EETTEEEEEEEETTTSTTCEE
T ss_pred hhHHHHHhhCCHHHHHHHHHHHHhcCCCceeccccCCccccceeEEEE-----------cCCCEEEEEEEcCCCCCCCcc
Q ss_pred eeeecccCCCccccEecc
Q FD01847913_040 80 VELKGKTKGGVMDWKIKD 97 (111)
Q Consensus 80 v~~k~~TKgG~~d~KI~~ 97 (111)
..+.=.-+--...|+|.+
T Consensus 121 ~~~~~~lv~~~g~w~Idd 138 (143)
T 3KZT_B 121 VSIPVRVVNVDGQYLIDD 138 (143)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEeeCCEEEEEE
No 16
>PF15633.10 ; Tox-ART-HYD1 ; HYD1 signature containing ADP-ribosyltransferase
Probab=25.46 E-value=3e+02 Score=17.62 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HhhcCCHHHHHHHHHcCccc------CCCCCCCccceeEEeeCCCC--hHHHHHHHc-----cCCCcEEEEeecCCCeee
Q FD01847913_040 15 VRRFMSKAEYKDFIKNGFEF------NPADSRGGISVTSVKVDPKN--PDAIKRSTG-----ALGADYYVDIDTTNKNVE 81 (111)
Q Consensus 15 VRRf~Sk~eyk~f~K~Gftf------DP~d~r~GISaTst~i~p~n--PD~I~~~Tg-----AlgADyYVDId~~~kkv~ 81 (111)
+..|.+++.+..+.+.|.-. ++.+.+.|-..=-+.+.|.. +..+....+ ..-+++||.|++...++.
T Consensus 1 ~yHyt~~~g~~~I~~~~~i~~s~~~~~~~~~~~g~g~y~t~~~p~~~~~~~~~~~~~~~~~~~~k~~~~i~id~~~~~~~ 80 (101)
T G8M247_ACECE/5 1 LYHYTDEVGLNGILNSKKLKPSLKAVNPKDARYGNGQYLSDIIPGTKTPGQLSKQFINNPFQGKRFTYYIEIDVTDLNII 80 (101)
T ss_pred CcccCCHHHHHHHHccCCCCCCcccCCccccccCCCeeccCCCCCCCChHHHHhhhhCCcccccceEEEEEEEcCCCeeE
No 17
>3NPD_A putative secreted protein; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION; HET: MSE, SO4, CXS; 1.6A {Pseudomonas aeruginosa}
Probab=25.01 E-value=99 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CchHhhcCCHHHHHHHHHcCcc--cCCCCCCCccceeEEeeCCCC
Q FD01847913_040 12 PGIVRRFMSKAEYKDFIKNGFE--FNPADSRGGISVTSVKVDPKN 54 (111)
Q Consensus 12 p~vVRRf~Sk~eyk~f~K~Gft--fDP~d~r~GISaTst~i~p~n 54 (111)
+.+...+|+...++.|.++|++ |-=.+...|-...++.|.|.+
T Consensus 67 ~~~~~~~C~~~~~~~~~~~G~~i~y~Y~~~~~g~~l~~~~i~~~d 111 (118)
T 3NPD_A 67 SQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS 111 (118)
T ss_dssp HHHHHHHHTCHHHHHHHTTTCEEEEEEEETTTCCEEEEEEECHHH
T ss_pred HHHHHhhccCHhHHHHHHCCCEEEEEEeeCCCCcEEEEEEEcHhh
No 18
>3WDN_A Glycine cleavage system H protein, mitochondrial; antiparallel beta sheet, beta sandwich, OXIDOREDUCTASE; HET: GOL; 0.86A {Bos taurus} SCOP: b.84.1.0
Probab=24.60 E-value=1.2e+02 Score=19.12 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCCCchHhhcCCHHHHHHHHHc
Q FD01847913_040 9 PQNPGIVRRFMSKAEYKDFIKN 30 (111)
Q Consensus 9 p~np~vVRRf~Sk~eyk~f~K~ 30 (111)
|+++...+.+++.++|+++.++
T Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~ 122 (125)
T 3WDN_A 101 FSNPSELDELMSEEAYEKYIKS 122 (125)
T ss_dssp ESCGGGGGGSEEHHHHHHHHHH
T ss_pred eCCHHHHHhhCCHHHHHHHHHh
No 19
>PF18096.5 ; Thump_like ; THUMP domain-like
Probab=24.13 E-value=2e+02 Score=18.56 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCChHHHHHHHccCCC-cEEE
Q FD01847913_040 52 PKNPDAIKRSTGALGA-DYYV 71 (111)
Q Consensus 52 p~nPD~I~~~TgAlgA-DyYV 71 (111)
|.+||.+++..+..|. ++|+
T Consensus 37 ~~~~~~lrk~l~~~g~~~~~l 57 (73)
T L0DLW3_SINAD/3 37 DLRPEALRAQWKPRGPHPATL 57 (73)
T ss_pred CCCHHHHHHHhCCCCCCCEEE
No 20
>PF07879.15 ; PHB_acc_N ; PHB/PHA accumulation regulator DNA-binding domain
Probab=22.78 E-value=94 Score=21.22 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred hhcCCHHHHHHHHHcCcccCCCCCCCcccee
Q FD01847913_040 16 RRFMSKAEYKDFIKNGFEFNPADSRGGISVT 46 (111)
Q Consensus 16 RRf~Sk~eyk~f~K~GftfDP~d~r~GISaT 46 (111)
+||.|.+|+.++.+.|..|---|...|--.|
T Consensus 16 ~~yVtl~el~~li~~G~~~~V~d~~Tg~DiT 46 (61)
T G2KLR2_MICAA/1 16 SSYVTLDDLCTMVKEERDFVVYDAKTGEDLT 46 (61)
T ss_pred CCccCHHHHHHHHHhCCCEEEEeCCCCCccH
No 21
>PF14066.10 ; DUF4256 ; Protein of unknown function (DUF4256)
Probab=22.69 E-value=1.5e+02 Score=24.26 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred hcCCHHHHHHHHHcCcccCCCCCCCccceeEEeeCCCChHHHHHHHccCCCcE
Q FD01847913_040 17 RFMSKAEYKDFIKNGFEFNPADSRGGISVTSVKVDPKNPDAIKRSTGALGADY 69 (111)
Q Consensus 17 Rf~Sk~eyk~f~K~GftfDP~d~r~GISaTst~i~p~nPD~I~~~TgAlgADy 69 (111)
..++.++|..|...|- ||.+-+ +=|.+ |+.||+.-||+-.|+
T Consensus 105 ~Ll~e~~Y~~LQ~~~~-~D~kts-sWL~T---------p~~iR~~GgAlfgd~ 146 (173)
T C6VZE9_DYAFD/1 105 EILDEETYRHLQTLGK-FDLKTS-SWIKT---------PANIRKLGGAVFCDR 146 (173)
T ss_pred ccCCHHHHHHHHhhcC-ccCCCc-ccccC---------ChhHHccCCcEEeee
No 22
>PF14056.10 ; DUF4250 ; Domain of unknown function (DUF4250)
Probab=20.98 E-value=1.3e+02 Score=18.79 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHcCcccCCCCCC
Q FD01847913_040 25 KDFIKNGFEFNPADSR 40 (111)
Q Consensus 25 k~f~K~GftfDP~d~r 40 (111)
+.|++.|+.||+...+
T Consensus 39 ~~l~~~GY~y~~~~~q 54 (55)
T R5LDH5_9FIRM/3 39 SKLKSAGYIYNKTINQ 54 (55)
T ss_pred HHHHHCCCeeeCCCCC
No 23
>6I2V_A Uncharacterized protein; Pilotin, T2SS, V.vulnificus, Outer-membrane, PROTEIN BINDING; HET: SO4, 1PE; 1.75A {Vibrio vulnificus}
Probab=20.54 E-value=1.1e+02 Score=22.66 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred chHhhcCCHHHHHHHHHcCccc
Q FD01847913_040 13 GIVRRFMSKAEYKDFIKNGFEF 34 (111)
Q Consensus 13 ~vVRRf~Sk~eyk~f~K~Gftf 34 (111)
.++++||+..|.+.+...|+.|
T Consensus 68 ~~~~~yC~~~ei~~~L~~GV~Y 89 (114)
T 6I2V_A 68 TSVSKYCEDATVRNQLDMGLMY 89 (114)
T ss_dssp HHHHHHHHCHHHHHHHHHTCEE
T ss_pred HHHHHhcCCHHHHHHHHcCCeE
No 24
>PF04365.17 ; BrnT_toxin ; Ribonuclease toxin, BrnT, of type II toxin-antitoxin system
Probab=20.49 E-value=1.2e+02 Score=18.49 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred cCCHHHHHHHHHcCcccC
Q FD01847913_040 18 FMSKAEYKDFIKNGFEFN 35 (111)
Q Consensus 18 f~Sk~eyk~f~K~GftfD 35 (111)
|+.....+.+.++|++|+
T Consensus 1 wd~~k~~~~~~khgi~~~ 18 (79)
T B6INL0_RHOCS/5 1 WDRQKAEANRRKHGVCFG 18 (79)
T ss_pred CCHHHHHHHHHHhCCCHH