Query FD01851368_03298 RHS repeat family protein
Match_columns 100
No_of_seqs 23 out of 26
Neff 2.65771
Searched_HMMs 86581
Date Tue Feb 27 20:07:40 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/9276115.hhr -oa3m ../results/9276115.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF20755.1 ; DUF6834_C ; Domain 52.4 76 0.00088 24.2 4.8 48 39-100 54-120 (129)
2 8BL6_A dIG14-scdim-EF62; de no 42.8 63 0.00073 26.9 3.4 38 55-96 98-135 (176)
3 2NDA_A Mid-cell-anchored prote 38.3 59 0.00068 25.0 2.4 21 69-96 82-102 (113)
4 2PH7_A Uncharacterized protein 37.7 83 0.00096 26.7 3.4 54 37-100 146-218 (246)
5 6E5C_A De novo beta protein; b 36.3 1.1E+02 0.0012 22.5 3.3 42 50-91 7-68 (78)
6 8ALO_B Transmembrane regulator 28.4 81 0.00093 25.6 1.9 25 65-91 55-79 (164)
7 PF17323.6 ; ToxS ; Trans-membr 28.3 90 0.001 24.9 2.1 25 65-91 42-66 (147)
8 6M3N_A anti-CRIPSR AcrIF7; ant 21.8 1.6E+02 0.0019 21.4 2.2 17 39-55 45-61 (69)
9 PF14894.10 ; Lsm_C ; Lsm C-ter 20.8 1.8E+02 0.0021 20.3 2.2 29 59-90 11-39 (62)
No 1
>PF20755.1 ; DUF6834_C ; Domain of unknown function (DUF6834), C-terminal domain
Probab=52.44 E-value=76 Score=24.16 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred HHHHHHHHHhhcCCCCCcccCcCCCCCceeEEecCCCCc--------------eeCCC--eEEEEeCCCC---CeeeeeC
Q FD01851368_032 39 DDLKYAGEQAATLKPGEMKDFPINPNSKSEVYIPGGNGV--------------PIKPD--KIRVRNNGDG---TFHGFPI 99 (100)
Q Consensus 39 ~DL~yA~~~A~tL~pg~~~~F~l~~~skS~V~~p~~dGt--------------~~~at--~i~vRNng~G---TfHGyPi 99 (100)
++++.+.++| ...+...++-.| -+. .+... +|||-|...| .|-|||-
T Consensus 54 e~~~~~~~l~------------~~~~~dyViVVP--te~~~~pFI~Ffre~~~~ik~~~~~IWv~N~e~~tIdpfIG~P~ 119 (129)
T F2KNS2_ARCVS/8 54 EDVRVHARFA------------SSYSGEYVIVVP--TEDSPIPFIKFFRKYSELINSVGLKIWVVDVEREAIDPYIGYPR 119 (129)
T ss_pred HHHHHHHHHh------------ccCCCCEEEEeC--CCCCchHHHHHHHHchHHHhhcCcEEEEEeCCCCccccccCCcC
Q ss_pred C
Q FD01851368_032 100 D 100 (100)
Q Consensus 100 ~ 100 (100)
|
T Consensus 120 D 120 (129)
T F2KNS2_ARCVS/8 120 D 120 (129)
T ss_pred C
No 2
>8BL6_A dIG14-scdim-EF62; de novo, immunoglobulin, single-chain dimer, sandwich, beta, EF-hand, DE NOVO PROTEIN; 2.8A {N/A}
Probab=42.78 E-value=63 Score=26.92 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=0.0 Template_Neff=2.300
Q ss_pred CcccCcCCCCCceeEEecCCCCceeCCCeEEEEeCCCCCeee
Q FD01851368_032 55 EMKDFPINPNSKSEVYIPGGNGVPIKPDKIRVRNNGDGTFHG 96 (100)
Q Consensus 55 ~~~~F~l~~~skS~V~~p~~dGt~~~at~i~vRNng~GTfHG 96 (100)
++.+|..|.-.-|.|-.. ..-..-+||+||-|..+|||
T Consensus 98 ESFYFe~p~~~islv~ve----keGdkLrV~LrNdG~~~F~G 135 (176)
T 8BL6_A 98 GDGYISAAEKGRVEVRVE----FEGDKMRVRLRNDSSTPVEV 135 (176)
T ss_dssp ---------CCEEEEEEE----EETTEEEEEEEEESSSCEEE
T ss_pred CceEecccccceEEEEEE----EeCCEEEEEEEcCCCCcEEE
No 3
>2NDA_A Mid-cell-anchored protein Z; MapZ, FtsZ, peptidoglycan, division, CELL CYCLE; NMR {Streptococcus pneumoniae R6}
Probab=38.31 E-value=59 Score=25.00 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred EEecCCCCceeCCCeEEEEeCCCCCeee
Q FD01851368_032 69 VYIPGGNGVPIKPDKIRVRNNGDGTFHG 96 (100)
Q Consensus 69 V~~p~~dGt~~~at~i~vRNng~GTfHG 96 (100)
+|.+ || ..|..-|.-+|.|||
T Consensus 82 ly~~--dg-----~ylVtIN~KTGwf~G 102 (113)
T 2NDA_A 82 LYKP--DG-----TYLFTLNCKTGYFVG 102 (113)
T ss_dssp EECT--TC-----CEEEEEETTTCCEEC
T ss_pred EECc--CC-----eEEEEEEccCCcccc
No 4
>2PH7_A Uncharacterized protein AF_2093; AF2093, Archaeoglobus fulgidus, STRUCTURAL GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, PSI, Protein Structure Initiative, UNKNOWN; HET: MSE; 2.4A {Archaeoglobus fulgidus DSM 4304}
Probab=37.69 E-value=83 Score=26.67 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred CHHHHHHHHHHhhcCCCCCcccCcCCCCCceeEEecCCCCc--------------eeCCC--eEEEEeCCCC---Ceeee
Q FD01851368_032 37 SKDDLKYAGEQAATLKPGEMKDFPINPNSKSEVYIPGGNGV--------------PIKPD--KIRVRNNGDG---TFHGF 97 (100)
Q Consensus 37 sk~DL~yA~~~A~tL~pg~~~~F~l~~~skS~V~~p~~dGt--------------~~~at--~i~vRNng~G---TfHGy 97 (100)
+..|+..+.+....|..+...+. ++-.| -+. .+... +|||-|...| .|-||
T Consensus 146 si~~v~e~l~~~~~l~~~~~~dy--------ViVVP--teetp~pFI~Ffre~~~~ik~~~~~IWVaN~e~~tIdPFIG~ 215 (246)
T 2PH7_A 146 TIDDTFEDVDIHLRMVDEVDGDY--------VVIVP--TENELNPFLKFFKQYSEDAKRAGLKIWVVNPDEKTIDPFIGY 215 (246)
T ss_dssp CHHHHHHTHHHHHHHTTSSSSEE--------EEEEE--CCSSSHHHHHHHHHHHHHHHHHTCEEEEEETTTTEEEEEECC
T ss_pred ehhcHHHHHHHHHHhhccCCCCE--------EEEeC--CCCCchHHHHHHHHchHHHHHcCcEEEEEcCCCCcccccCCc
Q ss_pred eCC
Q FD01851368_032 98 PID 100 (100)
Q Consensus 98 Pi~ 100 (100)
|-|
T Consensus 216 P~D 218 (246)
T 2PH7_A 216 PKD 218 (246)
T ss_dssp CSC
T ss_pred cCC
No 5
>6E5C_A De novo beta protein; beta sheet, beta protein, de novo, DE NOVO PROTEIN; NMR {synthetic construct}
Probab=36.25 E-value=1.1e+02 Score=22.48 Aligned_cols=42 Identities=38% Similarity=0.715 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred cCCCCCcccCcCCCCCceeEEecC-----CCCc---------------eeCCCeEEEEeCCC
Q FD01851368_032 50 TLKPGEMKDFPINPNSKSEVYIPG-----GNGV---------------PIKPDKIRVRNNGD 91 (100)
Q Consensus 50 tL~pg~~~~F~l~~~skS~V~~p~-----~dGt---------------~~~at~i~vRNng~ 91 (100)
++.||+.-...++||..-.+-.-+ |.|+ +.++-+||+||..+
T Consensus 7 tvnpgeeyevkvnpgtrveiqakgpaefegggtrtrlnpgesykfenltsqplrirlrnlsd 68 (78)
T 6E5C_A 7 TVNPGEEYEVKVNPGTRVEIQAKGPAEFEGGGTRTRLNPGESYKFENLTSQPLRIRLRNLSD 68 (78)
T ss_dssp EECTTCEEEEEECTTCEEEEEESSCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECSS
T ss_pred eeCCCceeEEEeCCCCeeEEEecCCeeccCCceeeecCCCCceecccCCCCCeEEEEecccC
No 6
>8ALO_B Transmembrane regulatory protein ToxS; Vibrio cholerae, transcription regulator, protein complex, ToxR, ToxS, hetero complex, MEMBRANE PROTEIN; 3.002A {Vibrio cholerae}
Probab=28.40 E-value=81 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred CceeEEecCCCCceeCCCeEEEEeCCC
Q FD01851368_032 65 SKSEVYIPGGNGVPIKPDKIRVRNNGD 91 (100)
Q Consensus 65 skS~V~~p~~dGt~~~at~i~vRNng~ 91 (100)
++.++|+| ||+-+..++|++-+...
T Consensus 55 ~SnvkyLP--NgtY~R~S~v~l~s~~~ 79 (164)
T 8ALO_B 55 TSNVKYLP--NGTYLRVSIVKLFSDDN 79 (164)
T ss_dssp EEEEEECT--TSEEEEEEEEEEESSSS
T ss_pred eecEEECC--CCeEEEEEEEEEEcCCC
No 7
>PF17323.6 ; ToxS ; Trans-membrane regulatory protein ToxS
Probab=28.26 E-value=90 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred CceeEEecCCCCceeCCCeEEEEeCCC
Q FD01851368_032 65 SKSEVYIPGGNGVPIKPDKIRVRNNGD 91 (100)
Q Consensus 65 skS~V~~p~~dGt~~~at~i~vRNng~ 91 (100)
++.++|+| ||+-+..++|.+-+...
T Consensus 42 ~SnvkyLp--NgtY~R~s~v~l~s~~~ 66 (147)
T D0YZ12_PHODD/3 42 NSHMVYLP--NHTYSRITVMKLFSQDE 66 (147)
T ss_pred EeeeEECC--CCceEEEEEEEEEeCCC
No 8
>6M3N_A anti-CRIPSR AcrIF7; anti-CRISPR inhibitor, Hydrolase Inhibitor; NMR {Pseudomonas aeruginosa}
Probab=21.77 E-value=1.6e+02 Score=21.39 Aligned_cols=17 Identities=35% Similarity=0.390 Sum_probs=0.0 Template_Neff=2.300
Q ss_pred HHHHHHHHHhhcCCCCC
Q FD01851368_032 39 DDLKYAGEQAATLKPGE 55 (100)
Q Consensus 39 ~DL~yA~~~A~tL~pg~ 55 (100)
.+.....++|+.|+|||
T Consensus 45 ~~v~a~q~~Aa~L~~GE 61 (69)
T 6M3N_A 45 AVVEEMNAKAAQLKDGE 61 (69)
T ss_dssp HHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHhcCCCCc
No 9
>PF14894.10 ; Lsm_C ; Lsm C-terminal
Probab=20.78 E-value=1.8e+02 Score=20.27 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred CcCCCCCceeEEecCCCCceeCCCeEEEEeCC
Q FD01851368_032 59 FPINPNSKSEVYIPGGNGVPIKPDKIRVRNNG 90 (100)
Q Consensus 59 F~l~~~skS~V~~p~~dGt~~~at~i~vRNng 90 (100)
|+|+|+. +.|++ --+..+..++|+|..+|
T Consensus 11 f~l~p~~--Vk~~~-ea~~I~V~drirVtE~G 39 (62)
T F4B811_ACIHW/8 11 LNLRPGD--IKVYE-EAGVITVLEKIKVTENG 39 (62)
T ss_pred hCCCccc--eEEEe-cCCEEEEeccEEeCCCc