Query FD01850236_02870 hypothetical protein
Match_columns 333
No_of_seqs 106 out of 152
Neff 5.78181
Searched_HMMs 86581
Date Tue Feb 27 20:01:24 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/9038021.hhr -oa3m ../results/9038021.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF21616.1 ; Topo-V_HhH_2_2nd ; 84.9 5.5 6.3E-05 30.3 5.1 44 71-149 11-54 (58)
2 3FEW_X Colicin S4; Colicin S4, 84.8 32 0.00037 38.1 13.0 187 114-332 301-499 (505)
3 1COL_A COLICIN A; ANTIBACTERIA 84.6 55 0.00064 32.1 13.2 185 114-332 6-204 (204)
4 7TDZ_s Nup214; Nuclear pore co 80.8 63 0.00073 41.8 14.9 150 55-220 718-891 (2037)
5 5XBJ_A Flagellar hook-associat 78.3 81 0.00094 34.2 13.2 110 43-158 31-142 (511)
6 2I88_A Colicin-E1; protein-mem 77.9 1.1E+02 0.0012 29.9 12.9 170 118-328 12-190 (191)
7 6THK_A Pyocin S5; Bacteriocin, 77.0 1.9E+02 0.0022 32.5 17.0 227 55-331 272-499 (506)
8 2D4Y_B Flagellar hook-associat 76.7 83 0.00095 33.8 12.6 114 43-163 34-150 (463)
9 PF05120.16 ; GvpG ; Gas vesicl 74.6 20 0.00023 29.0 5.7 38 118-161 31-68 (72)
10 PF19658.3 ; DUF6161 ; Family o 74.0 87 0.001 30.1 10.9 94 52-157 7-100 (223)
11 7WKK_i MGC84997 protein; nucle 74.0 1.2E+02 0.0014 34.4 12.8 196 16-219 278-505 (599)
12 7PQ5_L Tre23; RHS, TVISS, T6SS 73.4 19 0.00022 43.3 7.7 63 259-330 44-106 (1481)
13 8IOM_A Colicin 1B; pore-formin 71.7 1.6E+02 0.0018 29.1 14.7 178 114-331 12-197 (205)
14 1A87_A COLICIN N; BACTERIOCIN, 70.8 2.2E+02 0.0025 30.2 14.8 186 114-332 124-321 (321)
15 3L1N_A Cell wall antigen; heli 68.2 1E+02 0.0012 28.5 9.7 130 21-164 56-189 (194)
16 5CSD_D Envelope glycoprotein; 67.9 1.3E+02 0.0015 26.4 11.9 106 52-167 44-151 (159)
17 1CII_A COLICIN IA; COLICIN, BA 67.1 3.4E+02 0.0039 31.0 20.5 212 53-327 391-602 (602)
18 7WOO_L Nucleoporin NSP1; nucle 65.7 2.1E+02 0.0024 33.4 13.4 105 52-167 649-764 (823)
19 5E7X_A Cell wall antigen; palm 65.3 1.4E+02 0.0016 26.0 10.7 100 55-164 47-148 (155)
20 PF01024.23 ; Colicin ; Colicin 64.9 1.7E+02 0.002 28.4 10.6 175 114-323 5-182 (185)
21 6OMF_F RNA polymerase sigma fa 63.8 1.2E+02 0.0014 30.0 9.9 131 4-150 192-331 (331)
22 7R5K_I0 Nucleoporin p58/p45; m 63.4 75 0.00087 35.4 8.7 148 16-165 244-413 (599)
23 6DLC_A Designed protein DHD1:2 63.3 43 0.0005 28.8 5.6 45 145-189 11-55 (115)
24 7WOO_K Nucleoporin NUP57; nucl 62.8 2.9E+02 0.0033 30.2 13.1 168 21-219 290-474 (541)
25 7SAZ_C GldL; type IX secretion 62.6 2E+02 0.0023 28.8 10.9 103 70-183 122-227 (228)
26 PF20975.1 ; DGCcoil ; DGC-asso 61.9 3.7E+02 0.0042 29.6 14.8 144 56-219 347-491 (493)
27 5WOY_A Phosphoenolpyruvate-pro 61.9 2.1E+02 0.0025 27.3 10.8 110 39-166 14-141 (248)
28 7R5K_V0 Nuclear pore complex p 61.3 6.9E+02 0.008 33.3 16.9 147 52-220 714-887 (2090)
29 PF11101.12 ; DUF2884 ; Protein 60.5 1.4E+02 0.0017 29.1 9.5 100 71-171 42-151 (227)
30 5T12_A Phosphoenolpyruvate--pr 59.7 2.3E+02 0.0027 27.3 10.8 105 44-167 28-141 (255)
31 6YS8_D GldL; membrane protein 59.3 1.2E+02 0.0014 29.5 8.8 107 70-185 107-214 (215)
32 3H6P_A ESAT-6 LIKE PROTEIN ESX 58.8 1.7E+02 0.002 24.8 8.9 82 45-134 11-93 (111)
33 7WOO_G Nucleoporin NUP49/NSP49 57.7 4E+02 0.0046 28.7 15.6 157 53-219 278-468 (472)
34 PF04048.18 ; Sec8_N ; Exocyst 57.6 1.2E+02 0.0014 27.2 8.0 132 65-214 2-135 (142)
35 3WXX_H AopB; Translocator, Mem 57.0 1.8E+02 0.0021 28.9 9.5 170 111-323 26-208 (219)
36 PF11981.12 ; DUF3482 ; Domain 56.4 27 0.00031 35.3 4.1 47 256-317 139-187 (289)
37 7BUL_A General transcription f 53.3 36 0.00042 31.4 4.0 30 125-156 125-154 (161)
38 8SNB_6R RIB35; sperm, doublet 53.0 1.5E+02 0.0018 30.6 8.3 80 56-135 40-133 (310)
39 6S7O_E Dolichyl-diphosphooligo 52.1 2.9E+02 0.0033 30.9 11.2 95 52-172 513-607 (607)
40 4UT1_A FLAGELLAR HOOK-ASSOCIAT 50.8 3.2E+02 0.0037 31.4 11.5 111 53-163 90-219 (673)
41 PF05461.15 ; ApoL ; Apolipopro 50.6 1.9E+02 0.0022 29.2 8.9 136 145-327 8-144 (298)
42 3RH3_A Uncharacterized DUF3829 50.1 3.8E+02 0.0044 26.2 11.3 110 108-219 84-207 (264)
43 7T62_A Glypican-2; Glypican-3 47.9 6.5E+02 0.0076 28.6 13.1 126 21-170 15-153 (561)
44 PF11254.12 ; DUF3053 ; Protein 47.7 1.4E+02 0.0017 29.7 7.3 152 45-219 14-173 (219)
45 2F6M_D Vacuolar protein sortin 47.6 2E+02 0.0023 25.3 7.4 68 119-192 36-105 (109)
46 7TDZ_s Nup214; Nuclear pore co 47.5 2.2E+02 0.0025 37.5 10.3 123 52-190 788-916 (2037)
47 PF10439.13 ; Bacteriocin_IIc ; 47.4 44 0.00051 27.6 3.3 51 255-315 29-86 (86)
48 6J6F_A Envelope glycoprotein; 46.1 4.7E+02 0.0055 26.1 11.1 100 55-164 204-305 (313)
49 6H7W_O Putative vacuolar prote 44.8 3.5E+02 0.004 24.2 12.9 123 47-182 1-128 (220)
50 2CAZ_B VACUOLAR PROTEIN SORTIN 44.7 2.2E+02 0.0025 27.0 7.6 76 120-202 54-132 (155)
51 4UY3_A SEPTATION RING FORMATIO 44.3 4.2E+02 0.0048 25.0 12.1 104 52-175 89-198 (198)
52 PF09577.14 ; Spore_YpjB ; Spor 43.6 4E+02 0.0047 25.2 9.5 105 44-148 87-198 (229)
53 5XSJ_L Signal transduction his 42.9 3.6E+02 0.0042 23.9 9.9 96 117-219 22-122 (148)
54 3OGI_C Putative ESAT-6-like pr 42.3 2.8E+02 0.0032 22.4 8.5 71 56-134 8-78 (101)
55 8AX9_A Maltose/maltodextrin-bi 42.1 7.2E+02 0.0083 27.1 13.6 101 52-168 518-618 (675)
56 4OPC_A Conserved Archaeal prot 42.0 3.1E+02 0.0035 29.5 9.3 101 59-165 345-452 (453)
57 PF05277.16 ; DUF726 ; Protein 41.9 1.1E+02 0.0012 31.6 5.8 66 261-330 11-83 (340)
58 8FEF_C MCE-family protein MCE1 41.5 5E+02 0.0058 29.3 11.0 109 52-164 190-300 (524)
59 2DII_A TFIIH basal transcripti 41.4 75 0.00087 25.1 3.6 28 125-154 27-54 (61)
60 PF20572.2 ; DUF6781 ; Family o 41.3 5.4E+02 0.0063 25.5 10.8 92 61-168 73-164 (215)
61 7L7B_F RNA polymerase sigma fa 40.9 6.1E+02 0.007 25.9 11.3 113 4-126 254-382 (390)
62 PF19180.4 ; DUF5862 ; Family o 39.7 98 0.0011 25.1 4.0 62 258-327 1-63 (68)
63 2OTX_B Src kinase-associated p 39.7 1.8E+02 0.002 25.2 6.0 44 118-164 4-47 (211)
64 7NRC_A GCN1; Ribosome, Disome, 39.0 3.1E+02 0.0035 33.8 9.1 167 1-191 188-370 (1209)
65 7NRC_A GCN1; Ribosome, Disome, 38.8 1.9E+02 0.0023 35.3 7.6 182 5-222 150-349 (1209)
66 PF01153.23 ; Glypican ; Glypic 38.4 6.4E+02 0.0073 28.2 11.2 113 21-167 17-137 (531)
67 5XE7_A ECF RNA polymerase sigm 38.4 3.9E+02 0.0045 25.4 8.5 142 1-160 44-190 (312)
68 5JG7_A Fur regulated Salmonell 38.0 1.6E+02 0.0019 25.8 5.7 50 111-165 108-157 (160)
69 2OV3_A Periplasmic binding pro 37.9 2.1E+02 0.0025 27.6 6.8 117 111-242 107-225 (260)
70 8FEF_E Virulence factor Mce fa 36.9 7.2E+02 0.0083 25.6 11.6 118 35-167 136-256 (390)
71 5WUR_B ECF RNA polymerase sigm 36.6 2.9E+02 0.0033 23.2 6.7 118 2-127 60-187 (187)
72 8EQS_C Apolipoprotein A-I; Mem 36.4 5.6E+02 0.0065 24.2 13.2 112 56-183 96-209 (211)
73 PF19775.3 ; DUF6261 ; Family o 36.3 4.3E+02 0.0049 23.7 8.0 104 56-165 31-135 (163)
74 4YWT_B Glypican-1; glypican-1, 35.2 1E+03 0.012 26.8 12.6 113 21-167 32-152 (526)
75 6BTM_D Alternative Complex III 34.3 2.8E+02 0.0032 24.8 6.6 102 206-320 11-122 (174)
76 4GVP_A Response regulator prot 34.2 2.5E+02 0.0029 23.2 5.9 66 148-213 137-203 (208)
77 3Q4H_C Pe family protein; Stru 34.0 3.5E+02 0.0041 21.2 8.6 71 56-134 10-80 (98)
78 1KU9_B hypothetical protein MJ 33.9 4.6E+02 0.0053 22.5 9.7 101 3-130 39-150 (152)
79 6LOD_D Uncharacterized protein 33.8 4.1E+02 0.0047 24.1 7.6 98 206-320 28-135 (192)
80 1ZYM_B ENZYME I; PHOSPHOTRANSF 33.2 6.7E+02 0.0077 24.1 10.6 111 39-167 14-142 (258)
81 5J5L_A Uncharacterized protein 33.1 5.1E+02 0.0059 22.8 10.3 103 52-164 42-146 (160)
82 1YKH_A RNA polymerase II media 33.0 5.1E+02 0.0059 22.7 8.2 80 77-183 27-107 (108)
83 3R9V_B Invasin ipaD; type III 33.0 2.5E+02 0.0029 29.1 6.7 92 54-163 52-143 (286)
84 PF20232.2 ; T6SS_FHA_C ; C-ter 33.0 5.7E+02 0.0066 23.5 8.5 101 4-137 63-170 (179)
85 2PFT_A Exocytosis Protein; hel 33.0 3.1E+02 0.0036 29.9 7.7 123 79-220 412-554 (571)
86 6W1S_D Mediator of RNA polymer 32.8 3.9E+02 0.0045 24.5 7.3 82 77-183 73-155 (157)
87 PF12039.12 ; DUF3525 ; Protein 32.6 8.5E+02 0.0099 26.6 10.5 126 46-184 220-353 (364)
88 PF11887.12 ; Mce4_CUP1 ; Chole 32.0 8.2E+02 0.0094 24.8 15.3 164 35-218 4-180 (268)
89 2N5E_B Apolipoprotein A-I; nan 31.5 5.9E+02 0.0068 23.0 11.9 93 56-164 74-166 (167)
90 PF15967.9 ; Nucleoporin_FG2 ; 31.3 5.1E+02 0.0059 29.6 8.8 79 51-153 348-434 (596)
91 5XLN_B Threonine--tRNA ligase, 31.2 64 0.00074 23.1 1.7 14 145-158 22-35 (45)
92 7FIK_Y Nucleoporin Nup88A; CR, 31.1 1.3E+03 0.015 26.7 13.9 111 47-182 540-652 (728)
93 PF11855.12 ; DUF3375 ; Protein 30.8 3.7E+02 0.0043 29.4 7.8 148 49-211 131-302 (468)
94 7SAU_E Gliding motility protei 30.6 8.1E+02 0.0094 24.5 9.4 106 52-161 98-208 (223)
95 5Y2G_A Maltose-binding peripla 30.5 9.2E+02 0.011 26.6 10.8 119 71-218 332-450 (595)
96 7R5K_W0 Nuclear pore complex p 30.2 1.3E+03 0.015 26.7 14.3 113 45-182 551-665 (741)
97 1EQ1_A APOLIPOPHORIN-III; Five 29.7 7E+02 0.0081 23.3 13.1 133 45-190 2-145 (166)
98 PF20893.1 ; DUF6845 ; Domain o 29.6 4.1E+02 0.0047 24.6 6.8 68 72-159 69-136 (149)
99 6VME_E Vacuolar protein sortin 29.5 5.9E+02 0.0068 22.8 7.6 68 117-192 42-109 (122)
100 PF03081.19 ; Exo70_C ; Exo70 e 29.3 9.3E+02 0.011 24.6 11.1 121 79-220 224-364 (375)
101 7N61_0C Flagellar WD repeat-co 29.2 1E+03 0.012 26.0 10.7 84 52-161 132-222 (606)
102 8FEF_A Virulence factor Mce fa 29.0 9.6E+02 0.011 25.3 10.2 99 52-162 219-317 (409)
103 6W2D_z Large tegument protein 28.6 3.1E+02 0.0036 37.6 7.7 143 45-216 978-1136(3149)
104 5UE8_A Protein unc-13 homolog 28.6 1.3E+03 0.015 27.2 12.0 123 61-197 825-959 (961)
105 8B3D_c UV-stimulated scaffold 28.4 7.5E+02 0.0086 29.0 10.0 98 114-219 22-139 (709)
106 7WKK_H IL4I1 protein; nuclear 28.4 5.7E+02 0.0065 29.1 8.5 118 49-177 366-484 (547)
107 3VRC_B Cytochrome c'; c-type c 28.4 4.2E+02 0.0048 22.6 6.4 100 143-242 4-122 (131)
108 7JJ8_D Zinc-binding lipoprotei 28.2 5.1E+02 0.0058 25.8 7.8 114 111-239 120-237 (299)
109 6EC8_A Lantibiotic dehydratase 28.0 9.8E+02 0.011 27.7 10.9 109 52-195 50-177 (861)
110 7NFJ_A CC-Type2-(LaId)4-L28Y; 27.8 1.6E+02 0.0019 20.1 2.9 20 113-132 11-30 (32)
111 6PMI_F RNA polymerase sigma fa 27.6 6.9E+02 0.0079 22.5 12.8 112 3-131 112-239 (247)
112 PF03114.22 ; BAR ; BAR domain 27.4 6.3E+02 0.0073 22.4 7.6 123 46-182 25-171 (236)
113 2Q1Z_A RpoE, ECF SigE; ECF sig 27.3 5.9E+02 0.0068 21.6 7.2 73 45-125 108-184 (184)
114 7QWB_D CC-Type2-(Ue)4; aib, co 27.2 2.9E+02 0.0033 19.0 3.9 24 113-136 4-27 (32)
115 PF20721.1 ; C19orf12 ; C19orf1 26.9 1.1E+02 0.0013 28.0 2.8 62 246-330 28-90 (151)
116 7UN6_C Nucleosome assembly pro 26.9 7.1E+02 0.0081 27.3 9.0 126 33-172 13-145 (416)
117 PF17542.6 ; RP853 ; Uncharacte 26.8 1.9E+02 0.0022 30.4 4.6 52 273-327 204-255 (317)
118 7UIO_Bg Mediator of RNA polyme 26.7 7E+02 0.0081 24.6 8.3 79 77-182 124-203 (222)
119 PF10475.13 ; Vps54_N ; Vacuola 26.7 8.7E+02 0.01 23.4 9.4 105 109-219 34-140 (299)
120 5T51_A KLLA0F02343p; cell cycl 26.4 6.7E+02 0.0077 22.0 8.8 66 109-175 24-97 (120)
121 PF06511.15 ; T3SS_TC ; Type II 26.4 1.6E+02 0.0018 31.3 4.1 107 46-162 66-174 (337)
122 7WOO_L Nucleoporin NSP1; nucle 26.3 1.1E+03 0.012 27.9 10.9 103 52-165 694-804 (823)
123 PF01442.22 ; Apolipoprotein ; 26.3 8.3E+02 0.0096 23.1 11.7 123 56-195 58-193 (196)
124 4HKU_B TetR transcriptional re 26.3 2E+02 0.0023 23.8 4.0 37 158-194 13-49 (178)
125 PF09733.13 ; VEFS-Box ; VEFS-B 26.1 7E+02 0.0081 22.1 9.7 104 35-149 28-134 (138)
126 8TID_A Dynein regulatory compl 26.0 1.4E+03 0.016 27.7 11.7 86 53-169 103-188 (826)
127 PF05476.15 ; PET122 ; PET122 26.0 77 0.00089 32.4 1.8 64 126-193 116-180 (261)
128 6WMT_Z RNA polymerase sigma fa 26.0 9.7E+02 0.011 26.5 10.0 115 4-126 440-570 (577)
129 6V1V_D Vegetative insecticidal 25.8 1.7E+03 0.019 26.3 12.4 140 63-211 98-252 (796)
130 6CFZ_F Dad1,Dad1; DASH, Dam1 c 25.8 2.5E+02 0.0029 24.2 4.5 51 145-195 2-52 (92)
131 PF09763.13 ; Sec3_CC ; Exocyst 25.8 6.4E+02 0.0074 21.5 10.2 92 62-165 5-96 (133)
132 4XCP_A Nematode fatty acid ret 25.7 4.2E+02 0.0048 24.5 6.3 81 56-149 76-156 (170)
133 PF05823.16 ; Gp-FAR-1 ; Nemato 25.5 3.8E+02 0.0044 23.7 5.8 75 56-138 55-129 (149)
134 PF12959.11 ; DUF3848 ; Protein 25.5 1.9E+02 0.0022 23.7 3.7 41 151-191 2-42 (91)
135 PF07638.15 ; Sigma70_ECF ; ECF 25.3 4E+02 0.0046 22.3 5.7 114 3-126 66-183 (183)
136 7PP2_A Exocyst subunit Exo70 f 25.1 6.3E+02 0.0073 28.1 8.5 120 79-220 434-579 (606)
137 8Q84_X DASH complex subunit DA 25.0 3.9E+02 0.0045 23.3 5.5 53 143-195 16-68 (94)
138 8HKC_E RNA polymerase sigma fa 25.0 7.1E+02 0.0081 23.9 7.9 114 3-126 149-284 (284)
139 7Y5E_q6 PsbQ'; complex, PHOTOS 24.8 9.6E+02 0.011 23.3 10.8 109 47-165 88-203 (205)
140 PF10191.13 ; COG7 ; Golgi comp 24.8 1.4E+03 0.017 25.3 14.0 148 52-219 38-185 (730)
141 6AR6_A Toxin B; TOXIN-PROTEIN 24.8 1E+02 0.0012 39.8 2.9 139 161-304 961-1104(2067)
142 PF20336.2 ; DUF6631 ; Family o 24.7 8.3E+02 0.0095 22.5 9.2 108 18-151 6-124 (157)
143 3F1B_A TetR-like transcription 24.7 3.1E+02 0.0036 22.9 5.0 43 149-194 14-56 (203)
144 7Y9N_A Spike protein S2',5HB-H 24.6 1.2E+03 0.014 24.3 10.1 101 52-161 69-172 (250)
145 7WKK_H IL4I1 protein; nuclear 24.5 1.1E+03 0.013 27.1 9.7 102 53-169 416-534 (547)
146 7U1Z_B Toxin A; TcdA, Toxin A, 24.3 1E+02 0.0012 38.7 2.7 97 203-304 160-268 (1640)
147 PF14643.10 ; DUF4455 ; Domain 24.3 1.3E+03 0.015 24.7 10.5 103 52-166 359-461 (471)
148 2PRS_A High-affinity zinc upta 24.2 6E+02 0.0069 25.0 7.4 116 111-239 123-240 (284)
149 PF09325.14 ; Vps5 ; Vps5 C ter 24.2 8.1E+02 0.0093 22.2 13.1 123 47-182 16-143 (235)
150 4H0F_B Laminin-binding surface 24.1 3.8E+02 0.0043 26.0 6.0 95 111-216 106-203 (264)
151 1OR7_A RNA polymerase sigma-E 23.9 6.7E+02 0.0078 21.2 7.4 118 2-127 64-191 (194)
152 1AVO_B 11S REGULATOR; PROTEASO 23.8 6E+02 0.0069 22.3 6.7 70 75-158 17-86 (140)
153 2HWG_B Phosphoenolpyruvate-pro 23.7 1.1E+03 0.013 25.8 10.0 111 39-167 14-142 (575)
154 PF12896.11 ; ANAPC4 ; Anaphase 23.6 9.2E+02 0.011 22.6 8.8 99 73-182 13-111 (205)
155 PF04099.16 ; Sybindin ; Sybind 23.6 2.3E+02 0.0026 23.6 3.9 40 118-158 87-132 (132)
156 7RDH_G De novo designed protei 23.6 5.5E+02 0.0064 20.9 5.5 46 111-162 18-76 (77)
157 3FAV_B 6 kDa early secretory a 23.4 4.8E+02 0.0056 19.3 8.8 71 56-134 8-78 (94)
158 1RP3_C RNA polymerase sigma fa 23.3 8.1E+02 0.0093 21.9 12.1 108 3-127 113-234 (239)
159 2LEM_A Apolipoprotein A-I; LIP 23.1 9.8E+02 0.011 22.7 13.2 97 56-168 83-179 (216)
160 8FEF_C MCE-family protein MCE1 22.9 1.7E+03 0.02 25.4 13.4 175 35-219 117-305 (524)
161 4FHR_B Flagellar motor switch 22.7 1E+03 0.012 22.7 9.5 154 4-164 13-209 (216)
162 4ME9_A Transcriptional regulat 22.6 2.4E+02 0.0028 23.1 3.9 37 158-194 11-47 (189)
163 PF08621.14 ; RPAP1_N ; RPAP1-l 22.5 3.5E+02 0.0041 19.7 4.2 41 128-169 1-41 (46)
164 PF10023.13 ; Aminopep ; Putati 22.5 6E+02 0.007 26.5 7.3 100 113-221 211-313 (325)
165 1SZ9_C PCF11 protein; Pcf11, R 22.4 7.7E+02 0.0089 21.3 7.6 130 72-215 1-142 (144)
166 7Z36_A Endolysin,Transcription 22.3 1.3E+03 0.015 23.9 12.4 102 52-165 347-448 (482)
167 7XL3_F RNA polymerase sigma fa 22.3 1.1E+03 0.013 23.2 12.0 130 3-148 199-337 (338)
168 5Z2W_B Cell division protein F 22.3 1.3E+02 0.0015 19.6 1.8 17 35-51 17-33 (35)
169 6W1S_D Mediator of RNA polymer 22.2 4.4E+02 0.0051 24.2 5.7 97 14-126 56-156 (157)
170 8AX9_A Maltose/maltodextrin-bi 22.2 1.5E+03 0.018 24.7 13.9 101 52-168 474-574 (675)
171 4NNO_A Lipoprotein; Manganese 22.1 8.1E+02 0.0093 24.3 7.9 116 111-239 128-247 (291)
172 6MJ1_A Probable HTH-type trans 22.0 2.8E+02 0.0032 23.3 4.2 37 158-194 10-46 (207)
173 4DND_A Syntaxin-10; STRUCTURAL 22.0 8.4E+02 0.0097 21.6 12.0 93 60-165 31-124 (130)
174 7ZAW_A Glypican-3; Glycoprotei 21.9 1.6E+03 0.018 24.7 13.5 124 21-170 8-147 (464)
175 3NZZ_A Cell invasion protein s 21.8 2.2E+02 0.0025 29.9 4.0 103 46-158 35-139 (308)
176 3LJL_A transcriptional regulat 21.8 2.2E+02 0.0025 23.5 3.4 37 158-194 20-56 (156)
177 6FTJ_1 Dolichyl-diphosphooligo 21.7 4.5E+02 0.0052 24.7 5.7 74 145-219 46-122 (162)
178 7C7X_E NAP1-related protein 1; 21.7 5E+02 0.0058 25.2 6.3 46 115-165 15-60 (239)
179 7C4J_D SWI/SNF complex subunit 21.7 2.2E+03 0.025 26.3 15.0 160 4-182 542-767 (825)
180 PF17508.6 ; MccV ; Microcin V 21.6 3.3E+02 0.0038 24.1 4.4 39 288-332 12-50 (102)
181 8AFZ_B Sorting nexin-5; sortin 21.6 1.1E+03 0.013 24.0 8.8 121 45-182 205-326 (404)
182 4LWS_B Uncharacterized protein 21.6 5.3E+02 0.0062 19.1 8.3 71 56-134 16-86 (103)
183 7JJ9_A Zinc-binding lipoprotei 21.5 7.4E+02 0.0085 26.8 8.0 116 111-239 120-237 (475)
184 PF05818.16 ; TraT ; Enterobact 21.5 2E+02 0.0023 28.0 3.5 51 260-332 84-134 (213)
185 PF21609.1 ; Toxofilin-like_dom 21.4 2.7E+02 0.0031 23.5 3.6 27 59-85 52-78 (84)
186 4XWH_A Alpha-N-acetylglucosami 21.2 1.8E+03 0.021 25.2 14.0 163 8-207 452-638 (720)
187 7O4J_1 General transcription a 21.1 2.1E+02 0.0024 32.8 4.1 31 125-157 192-222 (645)
188 7EMF_G Mediator of RNA polymer 21.1 4.2E+02 0.0049 26.6 5.7 98 14-127 66-167 (233)
189 7WKK_i MGC84997 protein; nucle 21.0 2E+03 0.023 25.6 12.1 121 63-215 283-405 (599)
190 2HUJ_A Lin2004 protein; NP_471 20.9 6.7E+02 0.0077 23.3 6.5 87 110-212 16-102 (140)
191 5C4Y_A Putative transcription 20.8 3.2E+02 0.0038 22.1 4.2 37 158-194 7-43 (184)
192 5TGY_A PS1; 4-helix bundle, co 20.8 9.3E+02 0.011 21.6 6.8 65 55-130 40-104 (109)
193 1CIQ_A CHYMOTRYPSIN INHIBITOR 20.7 1.6E+02 0.0019 20.5 2.1 31 12-42 5-38 (40)
194 7A0H_B F-actin-capping protein 20.7 2.1E+02 0.0024 29.3 3.6 37 118-154 248-284 (294)
195 2P7N_A Pathogenicity island 1 20.4 8.5E+02 0.0098 26.9 8.1 108 54-163 116-226 (407)
196 3K2S_B Apolipoprotein A-I; sup 20.3 1.2E+03 0.013 22.5 13.0 116 52-183 124-241 (243)
197 PF19224.4 ; pATOM36 ; pATOM36 20.3 1.1E+02 0.0012 31.4 1.5 30 296-328 212-241 (260)
198 7OS9_AA Trp operon repressor; 20.3 8.6E+02 0.0099 22.1 7.0 70 62-137 55-125 (131)
199 PF10157.13 ; BORCS6 ; BLOC-1-r 20.3 7.9E+02 0.0092 20.6 12.5 97 48-159 1-98 (101)
200 5X7V_A Nucleosome assembly pro 20.2 5.4E+02 0.0062 24.0 6.0 46 115-165 3-48 (193)
201 2B1E_A Exocyst complex compone 20.2 8.7E+02 0.01 26.7 8.3 110 79-210 416-536 (564)
202 1LS4_A Apolipophorin-III; Heli 20.2 1.2E+03 0.014 22.7 10.8 102 58-169 26-138 (180)
203 7VF4_A Vps75; Candida albicans 20.1 3.3E+02 0.0038 26.5 4.7 39 115-158 16-54 (235)
No 1
>PF21616.1 ; Topo-V_HhH_2_2nd ; Topoisomerase V, second (HhH)2 tandem domain
Probab=84.86 E-value=5.5 Score=30.25 Aligned_cols=44 Identities=30% Similarity=0.426 Sum_probs=0.0 Template_Neff=1.200
Q ss_pred cCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q FD01850236_028 71 PLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFG 149 (333)
Q Consensus 71 ~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a 149 (333)
.|||+.++.+.+||+-|..++ ..-|++|++.|.+ |+|..+.+-+
T Consensus 11 glsp~aade~iehfesiagil-----------------------------atdle~i~rmyee------g~ls~eay~a 54 (58)
T F1SVL0_METKA/3 11 GLSPDAADELIEHFESIAGIL-----------------------------ATDLEEIERMYEE------GRLSEEAYRA 54 (58)
T ss_pred CCChHHHHHHHHHHHHHHHHH-----------------------------hcCHHHHHHHHHh------CCCCHHHHHH
No 2
>3FEW_X Colicin S4; Colicin S4, cell lysis, Y-ray, cell killing, IMMUNE SYSTEM; 2.45A {Escherichia coli}
Probab=84.79 E-value=32 Score=38.09 Aligned_cols=187 Identities=12% Similarity=0.144 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQ-----------LDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~-----------LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
..+.+.+++..+-+-+.|++...+. ++.+-..=+.|-.. .|..|..|=+..-++.-.-+-++
T Consensus 301 ~~e~~~l~~a~~~~~d~~k~i~~k~-----G~k~~~~AkelA~~~kN~qGKkIRn~~dA~~af~K~~~n~~~K~s~~D-- 373 (505)
T 3FEW_X 301 RIQSDVLNKAAEVISDIGNKVGDYL-----GDAYKSLAREIADDVKNFQGKTIRSYDDAMASLNKVLSNPGFKFNRAD-- 373 (505)
T ss_dssp HHCCCCCHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHHTCTTCCCCHHH--
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCccccCCHHh--
Q ss_pred CCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcC-ChhhcceeEEEeccchh
Q FD01850236_028 183 GLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKG-RESECRKAAIIEYSKFG 261 (333)
Q Consensus 183 GlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~G-re~~C~k~~~~E~g~f~ 261 (333)
...|+.-|+ .-+...+++++.+++|+ +|+++.+++...-..+..++..+| =...--++-..=.|+.+
T Consensus 374 ---r~AI~nAl~---s~d~~~~A~nl~~~sK~------Fg~~~~~~~~~~l~~~~~~g~~TGnW~P~~le~Es~~~~g~a 441 (505)
T 3FEW_X 374 ---SDALANVWR---SIDAQDMANKLGNISKA------FKFADVVMKVEKVREKSIEGYETGNWGPLMLEVESWVLSGIA 441 (505)
T ss_dssp ---HHHHHHHHH---HCCHHHHHHHHTTTCGG------GCSSCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHH---hCCHHHHHHHHHHHHHH------hchHHHhhHHHHHHHHHhhhhhcCCcHHHhHHHHHHHhHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhc
Q FD01850236_028 262 GKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVIY 332 (333)
Q Consensus 262 G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~iY 332 (333)
++++.+++..+++ .+. +.+++ |++..+++.. ++ .+.+++++-...-..+-..+.....
T Consensus 442 ~~~a~~~~~~~~~-----~~~-~~~~~---p~t~~gi~g~-~l---~a~~sa~id~~~v~~iN~~i~~~~~ 499 (505)
T 3FEW_X 442 SAVALGVFSATLG-----AYA-LSLGA---PAIAVGIVGI-LL---AAVVGALLDDKFADALNKEIIKPAH 499 (505)
T ss_dssp HHHHHHHHHHHHH-----HHH-HHCCS---CSSHHHHHHH-HH---HHHHHHHHCTHHHHHCCCCCSCCCC
T ss_pred HHHHHHHHHHHHH-----HHH-HHhcc---hHHHHHHHHH-HH---HHHHHHHhCHHHHHHHHHHchhhhc
No 3
>1COL_A COLICIN A; ANTIBACTERIAL PROTEIN; 2.4A {Escherichia coli} SCOP: f.1.1.1
Probab=84.65 E-value=55 Score=32.05 Aligned_cols=185 Identities=12% Similarity=0.178 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQ-----------LDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~-----------LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
.+..+.+++..+-+-+.|++...+. ++++-..=+.|-+. .|..|..+=+..-++...-+-++
T Consensus 6 ~~e~~~~~~a~~~~~d~~~~i~~k~-----G~k~~~~AkelA~~~kn~~GKkIrn~~dAl~~feK~~~~~~~k~s~~D-- 78 (204)
T 1COL_A 6 KDERELLEKTSELIAGMGDKIGEHL-----GDKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKAD-- 78 (204)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHHTSGGGCCCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCcchhcCHHH--
Q ss_pred CCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchh-
Q FD01850236_028 183 GLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFG- 261 (333)
Q Consensus 183 GlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~- 261 (333)
...|..-|+ .-+.+.+++++.+++|+ .|++|..++...-..++.+++.+|+ =|--+.|.-.+.
T Consensus 79 ---r~Ai~~Al~---s~d~~~~a~nl~~~sK~------fg~~~~~i~~~~l~~~~~~g~~Tgn----W~p~~lk~Es~~~ 142 (204)
T 1COL_A 79 ---RDALVNAWK---HVDAQDMANKLGNLSKA------FKVADVVMKVEKVREKSIEGYETGN----WGPLMLEVESWVL 142 (204)
T ss_dssp ---HHHHHHHHH---TCCHHHHHHHHHHHCGG------GCCTTHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH---hCCHHHHHHHHHHHHHH------hcHHHHhhhHHHHHHHHHHHHhhCC----cHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhc
Q FD01850236_028 262 GKQTASAFGGIAGGAIGRSACMWVM--GLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVIY 332 (333)
Q Consensus 262 G~~~GG~~Gg~~g~~~a~~iC~~~l--G~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~iY 332 (333)
+++++++..+.++ ..+-.+++ ++ |++..+++.. ++ .+.+++++-...-..+-..+.....
T Consensus 143 ~g~aa~~a~~~~~----~~~~~~a~~~~~---~~t~~gi~g~-~l---~a~~sa~id~~~v~kiN~~i~~~~~ 204 (204)
T 1COL_A 143 SGIASSVALGIFS----ATLGAYALSLGV---PAIAVGIAGI-LL---AAVVGALIDDKFADALNNEIIRPAH 204 (204)
T ss_dssp TTCCHHHHHHHHH----HHHHHHHHHCCS---CHHHHHHHHH-HH---HHHHHHHHCTHHHHHHCCCCCC---
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHhhH---HHHHHHHHHH-HH---HHHHHHHhCHHHHHHHHHhccccCC
No 4
>7TDZ_s Nup214; Nuclear pore complex, NUCLEAR PROTEIN; 6.9A {Xenopus laevis}
Probab=80.85 E-value=63 Score=41.82 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred HHHHHHHHHHHHH-HHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q FD01850236_028 55 IAQIQTARDKIDK-ALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY-- 131 (333)
Q Consensus 55 e~~L~~~A~~v~~-~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly-- 131 (333)
|.+|.+..+++.+ --....+||.+-|.+--|.+..+. --+...-+++-++|.+..+++.+.|
T Consensus 718 e~el~dl~~~~~~~~~~~~~~eE~~~L~~l~e~l~~l~---------------~~lk~~~e~~~~~i~el~~k~le~~a~ 782 (2037)
T 7TDZ_s 718 QKELDDLKARTSRACFQVGSEEEKRQLRTESDGLHSFF---------------LEIKETTESLRGEFSAMKIKNLEGFAS 782 (2037)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred -HHHHhhcCCCCCHHHHHH----------------HHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHH---hCCCHHHHH
Q FD01850236_028 132 -KKTYSQNSGRISGEEFFG----------------QRERLFKQLDGILNKFSKEQLNLK-QYEQIKQA---LGLSTKSIM 190 (333)
Q Consensus 132 -~~~~~~~~G~l~~~~F~a----------------~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~---LGlStKSiv 190 (333)
.+...+. .....++... +.++++..||.+|..+-+..=.+- .|..=|+. +.+..+..|
T Consensus 783 ~ed~~~k~-~~~~Dp~~~~ll~~~~l~~~~e~~l~~l~~~l~~l~~qL~ev~~~Ld~~W~~~~~ek~~~~~~~ip~~e~v 861 (2037)
T 7TDZ_s 783 IEDVQQRN-KLKQDPKYLQLLYKKPLDPKSETQMQEIRRLNQYVKNAVQDVNDVLDLEWDQYLEEKQKKKGIIIPERETL 861 (2037)
T ss_pred HHHHHHHH-HHhcCHHHHHHhhccCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Q ss_pred hccHhhCCccCchHHHHHHHHHHHHHHHhh
Q FD01850236_028 191 HKWDQTGVRDIEGYASYIEKSAKLMKVMRT 220 (333)
Q Consensus 191 H~W~~~g~g~Ipgya~~i~~vak~ak~~k~ 220 (333)
|+-...-...+-.+.++++++++-.|.++.
T Consensus 862 y~tl~~h~~i~~~q~~~l~qL~~k~k~l~~ 891 (2037)
T 7TDZ_s 862 FNSLANHQEIINQQRPKLEQLVENLQKLRL 891 (2037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 5
>5XBJ_A Flagellar hook-associated protein FlgK; Bacterial Flagellum, Hook, Filament, Junction protein, BIOSYNTHETIC PROTEIN; 2.448A {Campylobacter jejuni}
Probab=78.29 E-value=81 Score=34.24 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 43 VVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEIN 121 (333)
Q Consensus 43 Il~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~ 121 (333)
++.+|.... ......+..+.+.+.. .|-+...++.+...-+.|..-+. ..+..=...-..+..-....+++|+
T Consensus 31 ~~~~~~~~gl~~~l~~ff~a~~~la~--~P~~~~~R~~vi~~a~~La~~~n----~~~~~L~~~~~~~~~~i~~~v~~iN 104 (511)
T 5XBJ_A 31 RFPDLQNTGILQDLENYNKAWNDFAS--NPNENATKIALVKASQTLTESVN----NTFATLDKIQKKVNDDIKNTVDEIN 104 (511)
T ss_dssp HSCCCTTSTHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCcCCCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHH
Q FD01850236_028 122 KVLNEIQELYKKTYSQNS-GRISGEEFFGQRERLFKQL 158 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~~~~~-G~l~~~~F~a~R~~Lf~~L 158 (333)
..|++|.++=++-.+... +.-...+...||.+|+.+|
T Consensus 105 ~ll~~Ia~LN~~I~~~~~~~g~~~ndL~DqRd~ll~eL 142 (511)
T 5XBJ_A 105 RIGEEIATINKQIYGQEALPTEHANELRDRRDELELTL 142 (511)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchhcCCCCChhHHHHHHHHHHHHH
No 6
>2I88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, colicin, MEMBRANE PROTEIN; 2.5A {Escherichia coli}
Probab=77.94 E-value=1.1e+02 Score=29.90 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHH
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERL--------FKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSI 189 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~L--------f~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSi 189 (333)
++|++..+-+-+.|++...+. ++.+-..=+.| ++..|..|..|=+..-++.-.-+-++ .+.|
T Consensus 12 ~~i~~a~~~~~df~k~i~~k~-----G~k~~~~AkelA~~~kGKkir~~~~A~~~f~K~~~n~~~K~s~~D-----r~Ai 81 (191)
T 2I88_A 12 SQIKDAVDATVSFYQTLTEKY-----GEKYSKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKAD-----RDAI 81 (191)
T ss_dssp --CHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHSSCHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhhcCHHH-----HHHH
Q ss_pred HhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHH
Q FD01850236_028 190 MHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAF 269 (333)
Q Consensus 190 vH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~ 269 (333)
..-|+ .-+.+.+++++.+++|+ .|++|.+++...-..++.++..+|+ ...+.=-+
T Consensus 82 ~nAl~---s~d~~~~a~nl~~~sK~------Fg~~~~~~~~~~v~~~~~~g~~TGn----------------W~pl~l~~ 136 (191)
T 2I88_A 82 FNALA---SVKYDDWAKHLDQFAKY------LKITGHVSFGYDVVSDILKIKDTGD----------------WKPLFLTL 136 (191)
T ss_dssp HHHHT---TCCTHHHHTTHHHHHHH------TTCCSCCCTTCCHHHHHHHHHHHCC----------------CHHHHHHH
T ss_pred HHHHH---hCCHHHHHHHHHHHHHH------hhHHHHHhcHHHHHHHHHHHHhcCC----------------cHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCchhHHHHH-HHhccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 270 GGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCL-VVGIGSGIAGGKIVERFGENAGESLG 328 (333)
Q Consensus 270 Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~-iv~~~~~~~G~~~Gg~~G~~~Ge~~G 328 (333)
-.++.+..+..+..++|++ .++.+..++-. ++ .+.+++++=...-..+-..+|
T Consensus 137 Esi~~g~~a~~~va~~fs~---~~~t~~gii~~~~l---~a~~sa~id~~~~~~iN~~l~ 190 (191)
T 2I88_A 137 EKKAADAGVSYVVALLFSL---LAGTTLGIWGIAIV---TGILCSYIDKNKLNTINEVLG 190 (191)
T ss_dssp HHHHGGGTHHHHHHHHHHH---HHTCCCCHHHHHHH---HHHHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHhcC
No 7
>6THK_A Pyocin S5; Bacteriocin, Pyocin, Antibiotic, Ionophore, ANTIMICROBIAL PROTEIN; 2.2A {Pseudomonas aeruginosa PAO1}
Probab=77.00 E-value=1.9e+02 Score=32.46 Aligned_cols=227 Identities=18% Similarity=0.113 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh-hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 55 IAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSN-IYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKK 133 (333)
Q Consensus 55 e~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~-~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~ 133 (333)
....+.++..+..+|...-++..+.-.+--+.=+.+-.+ ....-...--..+..+++......+...+-...|-+-..+
T Consensus 272 l~~~~~e~~~Ae~AL~~A~e~rkkaE~kkkaAEdKv~ee~kkk~e~~~ikdAv~~~adfgK~IseK~G~k~s~iAkeLAd 351 (506)
T 6THK_A 272 PLEKQKAIYNGELLVDEIASLQARLVKLNAETTRRRTEAERKAAEEQALQDAIKFTADFYKEVTEKFGARTSEMARQLAE 351 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHH
Q FD01850236_028 134 TYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAK 213 (333)
Q Consensus 134 ~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak 213 (333)
..+-. .-..|.+..+-|.+.-..+ .+.++-.+...|.++|. .-+...+++++.+++|
T Consensus 352 ~iKGK-----KIRn~ddA~kafeK~k~np----~~K~s~aDr~AIanAL~--------------sld~~~~A~nL~~~sK 408 (506)
T 6THK_A 352 GARGK-----NIRSSAEAIKSFEKHKDAL----NKKLSLKDRQAIAKAFD--------------SLDKQMMAKSLEKFSK 408 (506)
T ss_dssp HHTTC-----BCCCHHHHHHHHHHHHHHH----HHHSCHHHHHHHHHHHH--------------TCCHHHHHHHHHHHHH
T ss_pred hhcCC-----CCCCHHHHHHHHHHHhhhh----chhcchhhHHHHHHHHH--------------HCCHHHHHHHHHHHHH
Q ss_pred HHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q FD01850236_028 214 LMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEG 293 (333)
Q Consensus 214 ~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t 293 (333)
+ +|++|.++++..-..++.++..+|+ ...+.=-+-.++++.+++.+..++|+++. +
T Consensus 409 ~------Fg~~g~~i~~~~v~~~~~~g~~TGn----------------WkPl~le~Esi~aG~~A~~~~a~~fs~~~--~ 464 (506)
T 6THK_A 409 G------FGVVGKAIDAASLYQEFKISTETGD----------------WKPFFVKIETLAAGAAASWLVGIAFATAT--A 464 (506)
T ss_dssp H------TTCCCCCCCHHHHHHHHHHHHHSSC----------------CHHHHHHHHHHHTTCBHHHHHHHHHHHHH--H
T ss_pred H------HhHHHHHhcHHHHHHHHHHHHhhCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--H
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhh
Q FD01850236_028 294 GGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVI 331 (333)
Q Consensus 294 ~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~i 331 (333)
.+.+++..+++ .+.+++++-...-..+-..+...+
T Consensus 465 tp~giig~ali---ma~~sa~id~~~v~kiN~~i~~~~ 499 (506)
T 6THK_A 465 TPIGILGFALV---MAVTGAMIDEDLLEKANNLVISIL 499 (506)
T ss_dssp SCCHHHHHHHH---HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHhhCHHHHHHHHHhhHHhh
No 8
>2D4Y_B Flagellar hook-associated protein 1; Multi-domain protein, alpha-helical bundle, complex all-beta folds, STRUCTURAL PROTEIN; 2.1A {Salmonella typhimurium}
Probab=76.68 E-value=83 Score=33.80 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred EecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 43 VVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEIN 121 (333)
Q Consensus 43 Il~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~ 121 (333)
++.+| ... ......+..+.+.... .|-+...++.+.+.-+.|..-+. .....-...-..+...+...+++|+
T Consensus 34 ~~~~~-~~~l~~~l~~f~~a~~~La~--~P~~~~~r~~vv~~a~~la~~~~----~~~~~l~~~~~~~~~~i~~~v~~iN 106 (463)
T 2D4Y_B 34 LLADK-SSSLSGSLQSFFTSLQTLVS--NAEDPAARQALIGKAEGLVNQFK----TTDQYLRDQDKQVNIAIGSSVAQIN 106 (463)
T ss_dssp HHHSS-SCCHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCC-CCChHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 122 KVLNEIQELYKKTYSQNS--GRISGEEFFGQRERLFKQLDGILN 163 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~~~~~--G~l~~~~F~a~R~~Lf~~LD~~L~ 163 (333)
+.|++|.++=++-..... ....+..+..||.+|+.+|-..++
T Consensus 107 ~ll~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRd~ll~~LS~li~ 150 (463)
T 2D4Y_B 107 NYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVG 150 (463)
T ss_dssp HHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHhC
No 9
>PF05120.16 ; GvpG ; Gas vesicle protein G
Probab=74.62 E-value=20 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGI 161 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~ 161 (333)
..|.+-|.+|+.+|.. |.++.++|-++++.|+.+|+..
T Consensus 31 ~~i~~~L~eL~~~~e~------GeIseeEy~~~e~~Ll~rl~~~ 68 (72)
T Q2JJS5_SYNJB/2 31 ENLQKELTALQIQLDL------GEIDEETYARREEEILLALEAL 68 (72)
T ss_pred HHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHH
No 10
>PF19658.3 ; DUF6161 ; Family of unknown function (DUF6161)
Probab=74.05 E-value=87 Score=30.08 Aligned_cols=94 Identities=7% Similarity=0.101 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..-++.+.+....+++.+..+.+...+...+--.+++..- ..-....-.....+..++++.++.|+++++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (223)
T A0A3A9UHJ4_9FL 7 NDFQKQIVKSENELIEHLTNANKEYENYAGKIDELKTNKE--------TAFDEWYSKIQNKFSTFDSDSKKKILNLENTY 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQ 157 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~ 157 (333)
.+.+.-. + +..+|.+|+.-.++
T Consensus 79 ~e~l~l~-~---~~~~w~~~a~~h~~ 100 (223)
T A0A3A9UHJ4_9FL 79 TEKLKLE-K---PARYWSKKSSKYYK 100 (223)
T ss_pred HHHhccH-H---HHHHHHHHHHHHHH
No 11
>7WKK_i MGC84997 protein; nuclear pore complex, inner ring, Nup205, Nup93, Nup188, Nup155, NDC1, Aladin, STRUCTURAL PROTEIN; 4.2A {Xenopus laevis}
Probab=73.96 E-value=1.2e+02 Score=34.41 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred hCCCChHHHHHHHHHCCCC--------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHH
Q FD01850236_028 16 MVNPPSGVKELYHQLNPEK--------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTP 86 (333)
Q Consensus 16 f~~~~~~~~~~F~~LN~hl--------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~ 86 (333)
|.+.++++++.|+.|-.|+ .++.-. -.+... ..+.+.|.+....+...|+.......++..+--+.
T Consensus 278 FNDLPEqaQKeLEqIDs~IQgQiQIseeLkqrk-----GeEI~K~qedIkaLsQEL~aIsSTLqsD~~aLeDLRaKVdQ~ 352 (599)
T 7WKK_i 278 DENLPQLLCQDVENFQKFVKEQKQVQEEISRMS-----SKAMLKVQEDIKALKQLLSVASSGLQRNALAIDKLKIETAEE 352 (599)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhh--hcc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHH
Q FD01850236_028 87 IDMFSSN--IYS------DALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGE---EFFGQRERLF 155 (333)
Q Consensus 87 l~~~~~~--~~~------d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~---~F~a~R~~Lf 155 (333)
+++.... ++. +....-.-...-.+.-+...+++-+++|++||+.-...-.+. ...++ .-...-.+-|
T Consensus 353 LRDtevAtRIIEr~gfKn~hA~FP~EYFtRLAeQMeERLe~YKqTIEQIERhLsS~Ssqs--q~SPQAIa~TLQAQHaSF 430 (599)
T 7WKK_i 353 LKNAEIALRTQKTPPGLQHENTAPADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNTL--HLSPQDLSMAMQKLYQTF 430 (599)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCH-------HHHHhccHhhC--CccCchH--HHHHHHHHHHHHHHh
Q FD01850236_028 156 KQLDGILNKFSKEQLNLK-QYEQIKQALGLST-------KSIMHKWDQTG--VRDIEGY--ASYIEKSAKLMKVMR 219 (333)
Q Consensus 156 ~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlSt-------KSivH~W~~~g--~g~Ipgy--a~~i~~vak~ak~~k 219 (333)
-.|+.++..+=++.=.+. .|..+.|+---|. +...|+|...- .+.-..+ -.+-+.|+.+ ++|+
T Consensus 431 LALAAKlAALhaEVQkLKalYtqlwRakTGS~RDPFe~arR~a~~~q~~~~~~~gp~pf~~~Pn~Aava~~-~~l~ 505 (599)
T 7WKK_i 431 VALAAQLQAVNENFKMLKEQYLGYRKAFLGDSTDVFEARRAEAKKWQNAPRVTTGPTPFSNIPNAAAVAMA-ATLT 505 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchhHHHHHHHHHHhhCCcccCCCCCcccCChHHHHHHH-HHcc
No 12
>7PQ5_L Tre23; RHS, TVISS, T6SS, TOXIN; 3.17A {Photorhabdus laumondii subsp. laumondii TTO1}
Probab=73.44 E-value=19 Score=43.29 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Q FD01850236_028 259 KFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKV 330 (333)
Q Consensus 259 ~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~ 330 (333)
.|.|+++|.++|+++++++...+. .++|+ +.+.+.++|+++ .++|..++...+..++...+..
T Consensus 44 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 106 (1481)
T 7PQ5_L 44 SFLGALAGAITGALIGAAVFAAAS-ALVGL----TILTGGLATVAV----IALGTAATFALGDVISAASSAV 106 (1481)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
No 13
>8IOM_A Colicin 1B; pore-forming toxin, antibacterial protein, colicin, ANTIMICROBIAL PROTEIN; 3.0A {Shigella flexneri}
Probab=71.72 E-value=1.6e+02 Score=29.07 Aligned_cols=178 Identities=16% Similarity=0.242 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCChHHHHHHhCCC
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERL--------FKQLDGILNKFSKEQLNLKQYEQIKQALGLS 185 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~L--------f~~LD~~L~~~~r~~~gl~~~~~lK~~LGlS 185 (333)
....++|++..+-+-+.|++...+. ++.+-..=+.| ++..|..|..|=+..-++.-.-+-++
T Consensus 12 ~~e~~~i~dav~~~sdf~k~i~~k~-----G~k~~~~AkelA~~~kGKkIr~~~dAl~~feK~~~~~~~k~s~~D----- 81 (205)
T 8IOM_A 12 RDEINMVKDAIKLTSDFYRTIYDEF-----GKQASELAKELASVSQGKQIKSVDDALNAFDKFRNNLNKKYNIQD----- 81 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHHTTTCCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHchhhhcCHHh-----
Q ss_pred HHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHH
Q FD01850236_028 186 TKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQT 265 (333)
Q Consensus 186 tKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~ 265 (333)
...|..-|+.. +.+.+++++.+++|+ .|++|.+++...-..++.++-.+|+ ...+
T Consensus 82 r~Ai~nAl~s~---d~~~~A~nL~~~sK~------Fg~~g~~~~~~~l~~~~~~g~~TGn----------------W~P~ 136 (205)
T 8IOM_A 82 RMAISKALEAI---NQVHMAENFKLFSKA------FGFTGKVIDRYDVAVELQKAVKTDN----------------WRPF 136 (205)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHHH------TTCCSCCCCCHHHHHHHHHHHHHCC----------------CHHH
T ss_pred HHHHHHHHHHC---cHHHHHHHHHHHHHH------HhhHHHHhcHHHHHHHHHHHHHcCC----------------cHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhh
Q FD01850236_028 266 ASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVI 331 (333)
Q Consensus 266 GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~i 331 (333)
.=-+-.++.+..++.+...+|++++ +.+.+++..+++ .+.+++++-...-..+-..++..+
T Consensus 137 ~le~Es~~~g~~As~~~a~~fs~~~--~tp~gii~~a~l---~a~~~a~id~~~~~kiN~~~~~~~ 197 (205)
T 8IOM_A 137 FVKLESLAAGRAASAVTAWAFSVML--GTPVGILGFAII---MAAVSALVNDKFIEQVNKLIGIGS 197 (205)
T ss_dssp HHHHHHHSTTSBHHHHHHHHHHHHH--HSCCHHHHHHHH---HHHHHHHHCTHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHhhc
No 14
>1A87_A COLICIN N; BACTERIOCIN, TOXIN, PORE-FORMING ACTIVITY; 3.1A {Escherichia coli K12} SCOP: f.1.1.1
Probab=70.80 E-value=2.2e+02 Score=30.22 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQ-----------LDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~-----------LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
.+..+.+++..+-+-+.|++...+. ++.+-..=+.|-.. .|..|..|=+..-++.-.-+-++
T Consensus 124 k~e~~~l~~a~~~~~d~~k~i~~k~-----G~k~~~lAkelA~~~kn~qGKkIRn~~dAlaaf~K~~~n~~~K~saaD-- 196 (321)
T 1A87_A 124 KNEKEALLKASELVSGMGDKLGEYL-----GVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSD-- 196 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHTCCGGGCCCHHHHHHHHHHHHTCTTCCCCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccccCCCCCHHHHHHHHHHHhhCccccCCHHH--
Q ss_pred CCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcC-ChhhcceeEEEeccchh
Q FD01850236_028 183 GLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKG-RESECRKAAIIEYSKFG 261 (333)
Q Consensus 183 GlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~G-re~~C~k~~~~E~g~f~ 261 (333)
...|..-|+ .-+.+.+++++.+.+|+ .|+++.+++...-..++.++..+| =...--++-..=.|+.+
T Consensus 197 ---r~AI~nAlk---sld~~~~A~nL~~~sKa------Fg~~~~~i~~~~v~~~~~~g~~TGnW~Pl~levEs~~lsg~a 264 (321)
T 1A87_A 197 ---KDAIVNAWK---QVNAKDMANKIGNLGKA------FKVADLAIKVEKIREKSIEGYNTGNWGPLLLEVESWIIGGVV 264 (321)
T ss_dssp ---HHHHHHHHH---TCCHHHHHHHHHTTCGG------GCCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHH---hCCHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHhHhhhcCCcHHHHHhhHHHHhhHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhc
Q FD01850236_028 262 GKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVIY 332 (333)
Q Consensus 262 G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~iY 332 (333)
++++.|+++..++..+..++-+.++|+ +-.++ .+.+++++-...-..+-..+...++
T Consensus 265 ~~~ala~~aa~~~~~a~~~l~~t~~gi-----------~g~il---~a~~sa~Id~~lv~kiNn~i~~~~~ 321 (321)
T 1A87_A 265 AGVAISLFGAVLSFLPISGLAVTALGV-----------IGIMT---ISYLSSFIDANRVSNINNIISSVIR 321 (321)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCHHHHHH-----------HHHHH---HHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHH---HHHHHHhhCHHHHHHHHHHhhhhcC
No 15
>3L1N_A Cell wall antigen; helix-turn-helix, protein-ligand complex, LIPID BINDING PROTEIN; HET: PLM, MSE; 1.3A {Penicillium marneffei}
Probab=68.20 E-value=1e+02 Score=28.50 Aligned_cols=130 Identities=13% Similarity=0.036 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred hHHHHHHHHHCCCC-CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhcccc
Q FD01850236_028 21 SGVKELYHQLNPEK-KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDA 98 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~ 98 (333)
..+...+..||.+. ....| -..|-... ..-...+++....++.. .+++++|...+...+.-+....
T Consensus 56 ~~i~~~~~~l~~~v~~~~g~----~~~~i~~~~~~l~~~i~~~~~~~~~~-~~~s~~da~~i~~~~~~l~~~~------- 123 (194)
T 3L1N_A 56 QNISLAVNKFNVDIERYVGG----DASHLLADGNVLIKATLDGVQSLQNE-PPLSSMEALALVGPVQDLSNQI------- 123 (194)
T ss_dssp HHHHHHHHHHHHHHHHCCSS----CCHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHCHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH-------
Q ss_pred ccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 99 LGQSGDIFGYIKDAGGG--YYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 99 ~~~~s~~~G~~~~~~~~--~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
...-..+-.-...+.+ ....|...|+.++....+....- ....+++....=+.+..++|..+.+
T Consensus 124 -~~~l~~l~~KK~~f~~~~~~~~v~~~L~~l~~~~~~~~~al-~~k~p~~~~~~~~~~~~~i~~~~~~ 189 (194)
T 3L1N_A 124 -MLAIQNLIDKKEPLVQAGFGGKVENNLRQQEEAAQKLSELV-STKVPHELADISRQLSDGIAAGIKK 189 (194)
T ss_dssp -HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcHHHHHHCCChHHHHHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH
No 16
>5CSD_D Envelope glycoprotein; arachidonic acid, Ligand binding domain, LIPID BINDING PROTEIN; HET: GOL, ACD; 1.45A {Talaromyces marneffei PM1}
Probab=67.94 E-value=1.3e+02 Score=26.42 Aligned_cols=106 Identities=12% Similarity=-0.013 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGG--YYEEINKVLNEIQE 129 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~--~l~~I~~~L~~Ie~ 129 (333)
..-...++++...+... .++++++...+...+.-+.... ...-..+-.-...+.+ .-..|...|+.+..
T Consensus 44 ~~l~~~l~~~~~~~~~~-~~~s~~d~~~i~~~~~~l~~~~--------~~~l~~l~~kk~~f~~~g~~~~v~~~L~~l~~ 114 (159)
T 5CSD_D 44 NVLIKATLDGVQSLQNE-PPLSSMEALALVGPVQDLSNQI--------LLAIQNLIDKKEPLVQAGFGGKVENNLRQQEE 114 (159)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcHHHHHHCCChHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 130 LYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 130 ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
........- -...+++....=+.+..++|..+.+...
T Consensus 115 ~~~~l~~al-~~k~p~~~~~~~~~~~~~i~~~~~~ai~ 151 (159)
T 5CSD_D 115 AAQKLSELV-STKVPHELADISRQLSDGIAAGIKKGID 151 (159)
T ss_dssp HHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHH
No 17
>1CII_A COLICIN IA; COLICIN, BACTERIOCIN, ION CHANNEL FORMATION, TRANSMEMBRANE PROTEIN; 3.0A {Escherichia coli} SCOP: f.1.1.1, h.4.3.1
Probab=67.11 E-value=3.4e+02 Score=31.01 Aligned_cols=212 Identities=14% Similarity=0.142 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 53 EKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYK 132 (333)
Q Consensus 53 ~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~ 132 (333)
...+.+++...++...+..+....++.-.+. +..+.+. ..+..++++..+-.+...+..++|-+-..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~a~~~~~~~~~~~~~~~g~~~~~~a~~la 457 (602)
T 1CII_A 391 DALNALLKEKENIRNQLSGINQKIAEEKRKQ-DELKATK------------DAINFTTEFLKSVSEKYGAKAEQLAREMA 457 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------------HHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHH
Q FD01850236_028 133 KTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSA 212 (333)
Q Consensus 133 ~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~va 212 (333)
+.++-. ---+.++=.+.=.+....++..++. .|-..|-++| +|+=. +.+++++.+++
T Consensus 458 ~~~~Gk-~ir~~~~A~~~~~k~~~~~~~k~~~--------~Dr~ai~~Al----~~~~~----------~~~a~~l~~~~ 514 (602)
T 1CII_A 458 GQAKGK-KIRNVEEALKTYEKYRADINKKINA--------KDRAAIAAAL----ESVKL----------SDISSNLNRFS 514 (602)
T ss_dssp HTTTTC-BCCCHHHHHHHHHHTHHHHTTSSCS--------HHHHHHHHHH----HTCCH----------HHHHHHHHHHH
T ss_pred HHHcCc-cCCCHHHHHHHHHHHHhchhhccCH--------HHHHHHHHHH----HHCCH----------HHHHHHHHHHH
Q ss_pred HHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q FD01850236_028 213 KLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSE 292 (333)
Q Consensus 213 k~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~ 292 (333)
|+ .|++|.+++...-..++.++..+|+ ..-|.--+=.=++|..++..++...- +.+|. |
T Consensus 515 k~------fg~~~~~~~~~~~~~~~~~~~~tg~-----------W~p~~~~~e~~~~g~~a~~~~~~~~~-~~~~~---~ 573 (602)
T 1CII_A 515 RG------LGYAGKFTSLADWITEFGKAVRTEN-----------WRPLFVKTETIIAGNAATALVALVFS-ILTGS---A 573 (602)
T ss_dssp HH------HTCCSCBCCHHHHHHHHHHHHHSTT-----------CHHHHHHHTTTBTTCBHHHHHHHHHH-HHTTC---C
T ss_pred HH------hchHHHHccHHHHHHHHHHHHhcCC-----------cHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHH---H
Q ss_pred CCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q FD01850236_028 293 GGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESL 327 (333)
Q Consensus 293 t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~ 327 (333)
.+++..+++ .+.+++++-...-..+-..+
T Consensus 574 ---~gi~~~~~~---~a~~~a~id~~~~~~~n~~~ 602 (602)
T 1CII_A 574 ---LGIIGYGLL---MAVTGALIDESLVEKANKFW 602 (602)
T ss_dssp ---CHHHHHHHH---HHHHHHHHCHHHHHHHHTCC
T ss_pred ---HHHHHHHHH---HHHHHHHHCHHHHHHHhhcC
No 18
>7WOO_L Nucleoporin NSP1; nuclear pore complex, inner ring, protomer, Saccharomyces cerevisiae, TRANSPORT PROTEIN; 3.71A {Saccharomyces cerevisiae}
Probab=65.68 E-value=2.1e+02 Score=33.38 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
...+..+++.+.+|++.-..|- +..+.+.+-++.++.+- ....-+-..-+.++++-+++.+.|+.||+..
T Consensus 649 ~~~~~~f~~~a~~v~~wd~~L~-~n~~~i~~l~~~l~~~~---------~~q~~l~~~Ld~ie~qQ~el~~~L~~lE~~~ 718 (823)
T 7WOO_L 649 TESASHFEQYTKKINSWDQVLV-KGGEQISQLYSDAVMAE---------HSQNKIDQSLQYIERQQDELENFLDNFETKT 718 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRI-----------SGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 132 ~~~~~~~~G~l-----------~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
...+... ... .+++.|..=+.|-.+||..-..|..
T Consensus 719 ~~~~~~~-~~~~~~~~~~~~d~~R~~~y~la~~l~~qL~~l~~~L~~ 764 (823)
T 7WOO_L 719 EALLSDV-VSTSSGAAANNNDQKRQQAYKTAQTLDENLNSLSSNLSS 764 (823)
T ss_dssp HHHHHHH-BCCSSSSCBTTSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-hccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 19
>5E7X_A Cell wall antigen; palmitic acid, MP1, LIPID BINDING PROTEIN; HET: PLM; 1.8A {Talaromyces marneffei PM1}
Probab=65.29 E-value=1.4e+02 Score=25.96 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q FD01850236_028 55 IAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGG--YYEEINKVLNEIQELYK 132 (333)
Q Consensus 55 e~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~--~l~~I~~~L~~Ie~ly~ 132 (333)
...+++..+.++.. .++++++...+...++-+.... ...-...-.--..+.+ .-..|...|+.+...+.
T Consensus 47 ~~~i~~~~~~~~~~-~~~~~~d~~~i~~~~~~l~~~~--------~~~l~~l~~kk~~~~~~g~~~~v~~~L~~l~~~~~ 117 (155)
T 5E7X_A 47 IKATENGLQELGPQ-PPLSLTEALALVGPVQGVNKLI--------MKTVDHLIEKKGPLVGGGYGPQVKASLQKQAHAAV 117 (155)
T ss_dssp HHHHHHHHHHHTTC-CCCCHHHHHTTHHHHHHHHHHH--------HHHHHHHHTTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHhHHHHHHHHHHH--------HHHHHHHHHhhHHHHhCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 133 KTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 133 ~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
.....- ....++++...=+.+.+++|..+.+
T Consensus 118 ~l~~~l-~~k~p~~~~~~~~~~~~~i~~~~~~ 148 (155)
T 5E7X_A 118 TLSELV-SSKVPSPLAPISKQLSDQVAQALQK 148 (155)
T ss_dssp HHHHHH-HHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCChhhHHHHHHHHHHHHHHHHH
No 20
>PF01024.23 ; Colicin ; Colicin pore forming domain
Probab=64.88 E-value=1.7e+02 Score=28.38 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCh-HHHHHHhCCCHHHHHh
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL-NLKQY-EQIKQALGLSTKSIMH 191 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~-gl~~~-~~lK~~LGlStKSivH 191 (333)
....+.|++..+-+-+.|++...+. ++.+-..=+.|-......-=|=....+ -+..+ ..++..+.-.-|..+-
T Consensus 5 ~~e~~~i~~a~~~~~df~k~i~~k~-----G~k~~~~AkelA~~~kGKkIRn~~dAl~~f~k~~~~~~~k~s~~Dr~Ai~ 79 (185)
T Q9I4Y4_PSEAE/3 5 AAEEQALQDAIKFTADFYKEVTEKF-----GARTSEMARQLAEGARGKNIRSSAEAIKSFEKHKDALNKKLSLKDRQAIA 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q ss_pred ccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHH
Q FD01850236_028 192 KWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGG 271 (333)
Q Consensus 192 ~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg 271 (333)
++-+.- +.+.+++++.+++|+ .|++|.+++...-..++.++..+|+ ...+.=-+-.
T Consensus 80 ~Al~s~--d~~~~a~nl~~~sK~------fg~~~~~~~~~~l~~~~~~g~~Tgn----------------W~p~~l~~Es 135 (185)
T Q9I4Y4_PSEAE/3 80 KAFDSL--DKQMMAKSLEKFSKG------FGVVGKAIDAASLYQEFKISTETGD----------------WKPFFVKIET 135 (185)
T ss_pred HHHHHC--CHHHHHHHHHHHHHH------HhHHHHHHcHHHHHHHHHHHHhhCC----------------cHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhccccCCCchhHHH-HHHHhccchhHHHHHHHHHHHHH
Q FD01850236_028 272 IAGGAIGRSACMWVMGLLTSEGGGIGAGL-CLVVGIGSGIAGGKIVERFGENA 323 (333)
Q Consensus 272 ~~g~~~a~~iC~~~lG~~~~~t~G~g~l~-C~iv~~~~~~~G~~~Gg~~G~~~ 323 (333)
++++..++.+..+++++ ..+.|..++ .+++ .+.+++++-...-+.+
T Consensus 136 i~aG~~a~~~~a~~fs~---~~~~p~gii~~a~l---~a~~~a~id~~~~~~i 182 (185)
T Q9I4Y4_PSEAE/3 136 LAAGAAASWLVGIAFAT---ATATPIGILGFALV---MAVTGAMIDEDLLEKA 182 (185)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHhCHHHHHHH
No 21
>6OMF_F RNA polymerase sigma factor RpoS; Transcription-activator, DNA/RNA, SigmaS, beta', TRANSCRIPTION, Transferase-DNA complex; 3.26A {Escherichia coli}
Probab=63.82 E-value=1.2e+02 Score=30.01 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CCCCHHHHHHHhhCCCChHHHHHHHHHCCCC-----CcCCCcEEEe---cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCH
Q FD01850236_028 4 ELTTPKSYECELMVNPPSGVKELYHQLNPEK-----KKKPGSILVV---ADPLSRS-PEKIAQIQTARDKIDKALEPLTN 74 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl-----~v~pGqivIl---~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~ 74 (333)
+..+.+++...+ ..+.+......+.+... ++....-..+ ..+.... ..+.....+....+..++..|++
T Consensus 192 ~~p~~~e~a~~~--~~~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~ 269 (331)
T 6OMF_F 192 HEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 269 (331)
T ss_dssp SCCCHHHHHHHH--CCCHHHHHHHHHTCCCCEESSSBSSSSTTCBHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCCCHHHHHHHh--CCCHHHHHHHHHhhcCccccCCCCCCCccccHHHHhccCCCCCcccccchHHHHHHHHHHHHcCCH
Q ss_pred HHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q FD01850236_028 75 EEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQ 150 (333)
Q Consensus 75 ~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~ 150 (333)
.++..+..+|.+ . +.-....--++..++-.-+.|.+.+..+-+-.++.+.+. .++.+.||.+
T Consensus 270 ~~r~il~l~~gl----~--------~~~~~t~~eIa~~lgis~~~V~~~~~ra~~kLr~~l~~~--~~~~~~~~~~ 331 (331)
T 6OMF_F 270 KQREVLARRFGL----L--------GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ--GLNIEALFRE 331 (331)
T ss_dssp HHHHHHHHHHTC----S--------SCCCCCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHC-
T ss_pred HHHHHHHHHhCC----C--------CCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHhhcC
No 22
>7R5K_I0 Nucleoporin p58/p45; multiprotein complex, nucleocytoplasmic transport, TRANSPORT PROTEIN; 12.0A {Homo sapiens}
Probab=63.41 E-value=75 Score=35.42 Aligned_cols=148 Identities=10% Similarity=0.044 Sum_probs=0.0 Template_Neff=2.500
Q ss_pred hCCCChHHHHHHHHHCCCC--CcCCCcEEEecCCCCCC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHH
Q FD01850236_028 16 MVNPPSGVKELYHQLNPEK--KKKPGSILVVADPLSRS--PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFS 91 (333)
Q Consensus 16 f~~~~~~~~~~F~~LN~hl--~v~pGqivIl~dP~~~~--~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~ 91 (333)
|.+.+++++..|+.+-.|+ ++.-++=|--.+-+... ..+.+.|.+....+...|+....--+++=.+--..+++..
T Consensus 244 FNDLPDdvKK~LEqIDshIQgQIQISkeLkqrkGeEI~KgqedIraL~KEL~~isttL~sD~~~l~DLRaKVdQaVqDTi 323 (599)
T 7R5K_I0 244 DENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRNTLNIDKLKIETAQELKNAE 323 (599)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh--hcc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----------CHHHHHHHHHH
Q FD01850236_028 92 SN--IYS------DALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRI----------SGEEFFGQRER 153 (333)
Q Consensus 92 ~~--~~~------d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l----------~~~~F~a~R~~ 153 (333)
.. ++. +......-...-.+.-++..++.-++++++||+.-...-.+. .. .-.+.|..=..
T Consensus 324 vATRIIDr~gFrnpQA~FPlEYFtRvTeqMEERLqwYKqTIEQIERkLsS~Asqs--q~SPQAIs~TLQAQHaTFLALAA 401 (599)
T 7R5K_I0 324 IALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQIEELENHLATQANNS--HITPQDLSMAMQKIYQTFVALAA 401 (599)
T ss_pred HHHHHhcCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q FD01850236_028 154 LFKQLDGILNKF 165 (333)
Q Consensus 154 Lf~~LD~~L~~~ 165 (333)
=..+||..|.++
T Consensus 402 KtAALDaELQKL 413 (599)
T 7R5K_I0 402 QLQSIHENVKVL 413 (599)
T ss_pred HHHHHHHHHHHH
No 23
>6DLC_A Designed protein DHD1:234_A; Computational Design, Heterodimer, Coiled-coil, DE NOVO PROTEIN; 3.261A {synthetic construct}
Probab=63.32 E-value=43 Score=28.77 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=0.0 Template_Neff=1.100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHH
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSI 189 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSi 189 (333)
..|.+.-++-+.+||..+..+-.-...-|..+..|....+|.+|+
T Consensus 11 ktflenlrrhldrldkhikqlrdilsenpedervkd~idlsersv 55 (115)
T 6DLC_A 11 KTFLENLRRHLDRLDKHIKQLRDILSENPEDERVKDAIDLSERSV 55 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhhHHHH
No 24
>7WOO_K Nucleoporin NUP57; nuclear pore complex, inner ring, protomer, Saccharomyces cerevisiae, TRANSPORT PROTEIN; 3.71A {Saccharomyces cerevisiae}
Probab=62.76 E-value=2.9e+02 Score=30.22 Aligned_cols=168 Identities=9% Similarity=0.017 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred hHHHHHHHHHCCCC-----------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHH
Q FD01850236_028 21 SGVKELYHQLNPEK-----------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPID 88 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-----------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~ 88 (333)
+...+..+++|+.. .|.|.+.+....|.... ..+++.+++.-+.. +-+.--...+.+.+..+.-+
T Consensus 290 ~~i~~~~~~~~~~~~~~~f~~~~yn~v~~~~~~~~~~p~~~~~~~w~~a~~~npdp~---~~P~~~~gf~~l~~R~~~Q~ 366 (541)
T 7WOO_K 290 EQVLKCKESWDPNTTKTKLRAFVYNKVNETEAILYTKPGHVLQEEWDQAMEKKPSPQ---TIPIQIYGFEGLNQRNQVQT 366 (541)
T ss_dssp HHHHHHHHSSSSSCSSCSCCEEECCCCCTTCSSCCCCCTTSCHHHHHHHTTTCSSTT---CCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcceeEehhccCChHHHHhcCCCCCCCHHHHHHHHHHCCCCC---ccceEecchhHHHHHHHHHH
Q ss_pred HHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH---HHHHH
Q FD01850236_028 89 MFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDG---ILNKF 165 (333)
Q Consensus 89 ~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~---~L~~~ 165 (333)
..+ .....++++|.+.+++|.+.|....... -.++..+..+|-.||.. .+..+
T Consensus 367 ~~~-------------------~~~~~~l~~l~~~~~~l~~~~~~~~~~~-----i~~~~~~~~~l~~rll~l~~~~~~l 422 (541)
T 7WOO_K 367 ENV-------------------AQARIILNHILEKSTQLQQKHELDTASR-----ILKAQSRNVEIEKRILKLGTQLATL 422 (541)
T ss_dssp HHH-------------------HHHHHHHHHHHHHHHHHHHCCCCCSTTT-----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhC-CccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 166 SKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTG-VRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 166 ~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g-~g~Ipgya~~i~~vak~ak~~k 219 (333)
-++..-+. +...|++.|. .+..+-+... .+.+..+..++..+..-.+.++
T Consensus 423 ~~~g~~l~~~ee~L~~~l~----~l~~~l~~p~~~~~~~el~a~l~~l~~~~~~l~ 474 (541)
T 7WOO_K 423 KNRGLPLGIAEEKMWSQFQ----TLLQRSEDPAGLGKTNELWARLAILKERAKNIS 474 (541)
T ss_dssp SSCSSSCSTTHHHHHHHHH----HHHHTTSCSSSSSSSSTHHHHHHSHHHHHHHHH
T ss_pred HHcCCCCCHhHHHHHHHHH----HHHHHccCccchhhHHHHHHHHHHHHHHHHHhh
No 25
>7SAZ_C GldL; type IX secretion system, MOTOR PROTEIN; 3.0A {Capnocytophaga canimorsus (strain 5)}
Probab=62.61 E-value=2e+02 Score=28.78 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred hcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q FD01850236_028 70 EPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFG 149 (333)
Q Consensus 70 ~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a 149 (333)
.+++++..+.+.+..+-+...+ +..+..+ .....+......++.+.+.|..|++.|..+++.. +.+--.
T Consensus 122 ~~~~~~~~~~l~~~~~~l~~~~-----~~l~~~~-~~~~~t~~y~eq~~~l~~nL~~lN~~Ye~~l~~~-----~~~~~~ 190 (228)
T 7SAZ_C 122 AQIDANLMHSLSASIQNFAGAA-----KEIAPVT-DAMVSTHKYGEELSMAAAHLESLNSLYKLQLERT-----ENQVSA 190 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhCHHHHHHhHHHHHHHHHHH-----HhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q ss_pred HHHHH--HHHHHHHHHHHHHHhcCCC-ChHHHHHHhC
Q FD01850236_028 150 QRERL--FKQLDGILNKFSKEQLNLK-QYEQIKQALG 183 (333)
Q Consensus 150 ~R~~L--f~~LD~~L~~~~r~~~gl~-~~~~lK~~LG 183 (333)
.+..- .+++..++.++.+..-.|. .|..+=.+++
T Consensus 191 ~~~~~~~~~~~~~e~~~L~~nl~~LN~vYg~ML~AM~ 227 (228)
T 7SAZ_C 191 QAGVVDNLNSLNEQMMSFKDNLKSLNSVYGGMLSAMG 227 (228)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 26
>PF20975.1 ; DGCcoil ; DGC-associated coil
Probab=61.92 E-value=3.7e+02 Score=29.61 Aligned_cols=144 Identities=10% Similarity=0.105 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEP-LTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKT 134 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~-Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~ 134 (333)
..+...++.+...|.. ++ ..+-.++++.++ .---..+..--..+..++.++.+-|.+|+..-...
T Consensus 347 ~~~~~~~~~L~~~L~~~~~------~~~L~~~l~~i~--------~li~~~~~~Er~~~e~FL~~L~~rL~~l~~~l~~s 412 (493)
T DGCP_PSEAE/1-4 347 SSHQPQAEALRERIDGSLN------WYELVPVLDDLA--------VLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDA 412 (493)
T ss_pred hhhHHHHHHHHHHHHcCCC------HHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHH
Q FD01850236_028 135 YSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKL 214 (333)
Q Consensus 135 ~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~ 214 (333)
.... .+.+..++.|=..++..+..+-...-.-.+-..||..+.=.-..|..++++--..+-......-+++...
T Consensus 413 ~~~~------~~~~~~~~~l~~~v~~qv~~i~~~v~~a~dL~~LK~~V~~~L~~I~~~l~~~~~~e~~r~~~~~~~l~~L 486 (493)
T DGCP_PSEAE/1-4 413 HAGY------TDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQAL 486 (493)
T ss_pred HHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q FD01850236_028 215 MKVMR 219 (333)
Q Consensus 215 ak~~k 219 (333)
..-|+
T Consensus 487 ~~rL~ 491 (493)
T DGCP_PSEAE/1-4 487 MERVN 491 (493)
T ss_pred HHHHh
No 27
>5WOY_A Phosphoenolpyruvate-protein phosphotransferase; transferase; NMR {Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)}
Probab=61.88 E-value=2.1e+02 Score=27.31 Aligned_cols=110 Identities=11% Similarity=0.147 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CcEEEecCC---------CCCC-HHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHCHHHHHHHHhhhcccccc
Q FD01850236_028 39 GSILVVADP---------LSRS-PEKIAQIQTARDKIDKALEPL--------TNEEAKLLYENRTPIDMFSSNIYSDALG 100 (333)
Q Consensus 39 GqivIl~dP---------~~~~-~~ee~~L~~~A~~v~~~l~~L--------s~~ea~fl~~~~~~l~~~~~~~~~d~~~ 100 (333)
|.++++..+ .... ..|...+.++...+...|..+ ++++++.+.-|..+|+.-.
T Consensus 14 G~~~~~~~~~~~~~~~~~~~~~~~~E~~rl~~A~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~lL~D~~--------- 84 (248)
T 5WOY_A 14 GKAFLYTKEKVTINVEKIEESKVEEEIAKFRKALEVTQEEIEKIKEKALKEFGKEKAEIFEAHLMLASDPE--------- 84 (248)
T ss_dssp EEEEECCBCCCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCHH---------
T ss_pred EEEEEeCCccccceeeecChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCHH---------
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 101 QSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFS 166 (333)
Q Consensus 101 ~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~ 166 (333)
..........+.-...+..+.+.-+-|.+.|... .+.++.+|..=+..|-..|-+.+
T Consensus 85 ----l~~~i~~~I~~~~~~a~~A~~~~~~~~~~~~~~~-----~~~~l~~r~~Di~d~~~~ll~~l 141 (248)
T 5WOY_A 85 ----LIEGVENMIKTELVTADNAVNKVIEQNASVMESL-----NDEYLKERAVDLRDVGNRIIENL 141 (248)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHh
No 28
>7R5K_V0 Nuclear pore complex protein Nup214; multiprotein complex, nucleocytoplasmic transport, TRANSPORT PROTEIN; 12.0A {Homo sapiens}
Probab=61.34 E-value=6.9e+02 Score=33.32 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..|+++|++-.+++..... ++||.+.|.++.+.++.++ ..--...-...........+|.+.++-+|++-
T Consensus 714 ~kEL~elk~r~~~~~~~~g--~~Eel~~L~k~l~eL~~fl--------~eLKettk~l~~dV~~LK~~LlE~Fa~~EeAR 783 (2090)
T 7R5K_V0 714 QKELEELKARTSKACFQVG--TSEEMKMLRTESDDLHTFL--------LEIKETTESLHGDISSLKTTLLEGFAGVEEAR 783 (2090)
T ss_pred HHHHHHHHHHHhhcccccC--CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCC---------CCCHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHHhCC
Q FD01850236_028 132 KKTYSQNSG---------RISGE-----------------EFFGQRERLFKQLDGIL-NKFSKEQLNLKQYEQIKQALGL 184 (333)
Q Consensus 132 ~~~~~~~~G---------~l~~~-----------------~F~a~R~~Lf~~LD~~L-~~~~r~~~gl~~~~~lK~~LGl 184 (333)
.+.-+..+. .|+.. +.+.-+++|=.+.+..+ ++.-++.+-+|.-+.|-+.|..
T Consensus 784 sr~er~kdp~y~~LL~sR~LDP~SarqLs~Lrrl~~yVEsqL~ev~k~LDsQwerhl~skkKkkRl~vPSlEaIYqTLrn 863 (2090)
T 7R5K_V0 784 EQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLLVPERETLFNTLAN 863 (2090)
T ss_pred HHHHHhcCCCchHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q ss_pred CHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhh
Q FD01850236_028 185 STKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRT 220 (333)
Q Consensus 185 StKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~ 220 (333)
-.+.+.- ...+|++|..=.|.++.
T Consensus 864 n~~il~a------------qr~rLe~L~ekLKklrL 887 (2090)
T 7R5K_V0 864 NREIINQ------------QRKRLNHLVDSLQQLRL 887 (2090)
T ss_pred HHHHHHH------------HHHHHHHHHHHHHHHHh
No 29
>PF11101.12 ; DUF2884 ; Protein of unknown function (DUF2884)
Probab=60.46 E-value=1.4e+02 Score=29.06 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred cCCHHHHHHHHHCHHHHHHHHhh---hccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCH
Q FD01850236_028 71 PLTNEEAKLLYENRTPIDMFSSN---IYSDALGQSGDIFGYIKDAG-GGYYEEINKVLNEIQELYKKTYSQNSG--RISG 144 (333)
Q Consensus 71 ~Ls~~ea~fl~~~~~~l~~~~~~---~~~d~~~~~s~~~G~~~~~~-~~~l~~I~~~L~~Ie~ly~~~~~~~~G--~l~~ 144 (333)
+||+++.+.+.+|+.-+...+-. ...+....+...++.+.+.+ ....+.+++.++++..--.+.|... | +|..
T Consensus 42 ~Ls~~Qq~~l~~Y~~~vr~~~P~~~~ia~~g~~la~~al~~v~~~lg~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~l~~ 120 (227)
T Q3IDE0_PSET1/3 42 ALNHSQQKALTQYSDSLRTQLPEVANIALEGVKIAGVALQEVANAFNIDGLDNISSLMDDIKLEVQNTFYQQ-DTFVMDQ 120 (227)
T ss_pred eCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhhcC-CeEEECh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hcC
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKE----QLN 171 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~----~~g 171 (333)
..|-.-...+=+.++..+..+... .+|
T Consensus 121 ~~~~~~~~~~~~e~e~~ie~~v~~~~~~~~g 151 (227)
T Q3IDE0_PSET1/3 121 QSFNQFGENFEQQFEQQIETAVESAVMQSMG 151 (227)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHhHhhHH
No 30
>5T12_A Phosphoenolpyruvate--protein phosphotransferase; PTSNtr, phosphotransfer, TRANSFERASE; 2.299A {Escherichia coli}
Probab=59.68 E-value=2.3e+02 Score=27.30 Aligned_cols=105 Identities=8% Similarity=0.042 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred ecCCCCCC-HHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHH
Q FD01850236_028 44 VADPLSRS-PEKIAQIQTARDKIDKALEPL--------TNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGG 114 (333)
Q Consensus 44 l~dP~~~~-~~ee~~L~~~A~~v~~~l~~L--------s~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~ 114 (333)
+....... ..|.+.|..+...+.+.|..+ +++.++.|.-|..+|++-. ....+...+.
T Consensus 28 ~~~~~~~~~~~E~~r~~~A~~~~~~~l~~~~~~~~~~~~~~~~~il~a~~~ll~D~~-------------l~~~i~~~I~ 94 (255)
T 5T12_A 28 VYQASTLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTR-------------LRRELFAEVD 94 (255)
T ss_dssp CCCCBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH-------------HHHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHcCHH-------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 115 GYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 115 ~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
+. ......+.+.-.-|.+.|... .+.|+.+|..=+..+-..|-..+.
T Consensus 95 ~~-~~a~~Ai~~~~~~~~~~~~~~-----~~~~~~~r~~Di~d~~~~ll~~l~ 141 (255)
T 5T12_A 95 KG-SVAEWAVKTVIEKFAEQFAAL-----SDNYLKERAGDLRALGQRLLFHLD 141 (255)
T ss_dssp TT-BCHHHHHHHHHHHHHHHHHTC-----CCHHHHTTHHHHHHHHHHHHHHHT
T ss_pred cC-CCHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHh
No 31
>6YS8_D GldL; membrane protein complex ion-driven motor, MOTOR PROTEIN; 3.9A {Flavobacterium johnsoniae}
Probab=59.31 E-value=1.2e+02 Score=29.54 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred hcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q FD01850236_028 70 EPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFG 149 (333)
Q Consensus 70 ~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a 149 (333)
..++++..+.+.+..+-+...+ +..+..+. ....+......++.+.+.|..|++.|..+++..+..+..-+=+.
T Consensus 107 ~~~~~~~~~~l~~~~~~l~~~~-----~~l~~~s~-~s~~t~~Y~eqm~~lnknLs~LN~~Ye~qlk~~~~~~~~~~~~~ 180 (215)
T 6YS8_D 107 AKVDGELMASLGNSIKNFEGAA-----KAISPTVD-SIAGQKKYAEEMSMAAAQMESLNSLYKVQLESASRNAQANSEIA 180 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHhHHHHHHHHHHH-----HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCC
Q FD01850236_028 150 QRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLS 185 (333)
Q Consensus 150 ~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlS 185 (333)
+- -+++..++.+|.+..-.|. .|..+=.++...
T Consensus 181 ~~---t~~~~ee~~~L~~nl~~LN~VYg~MLsAM~~~ 214 (215)
T 6YS8_D 181 EN---AAKLKEQMASMTANIASLNSVYGGMLSAMSNK 214 (215)
T ss_dssp -------------------------------------
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 32
>3H6P_A ESAT-6 LIKE PROTEIN ESXS; Four-helix bundle, Structural Genomics, PSI-2, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, Integrated Center for; 1.91A {Mycobacterium tuberculosis}
Probab=58.76 E-value=1.7e+02 Score=24.79 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKV 123 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~ 123 (333)
..+.... ......|..++..+......+...-.+.-..--.+..... +.++......-.-|...++++.+.
T Consensus 11 ~~~~~~~~~vd~~~l~~~a~~~~~~~~~l~~~l~~l~~~v~~l~~~W~--------G~Aa~Af~~~~~~w~~~~~~l~~~ 82 (111)
T 3H6P_A 11 DDDKMSLLDAHIPQLIASHTAFAAKAGLMRHTIGQAEQQAMSAQAFHQ--------GESAAAFQGAHARFVAAAAKVNTL 82 (111)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q FD01850236_028 124 LNEIQELYKKT 134 (333)
Q Consensus 124 L~~Ie~ly~~~ 134 (333)
|.+|.+.-.+.
T Consensus 83 L~~i~~~l~~a 93 (111)
T 3H6P_A 83 LDIAQANLGEA 93 (111)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHH
No 33
>7WOO_G Nucleoporin NUP49/NSP49; nuclear pore complex, inner ring, protomer, Saccharomyces cerevisiae, TRANSPORT PROTEIN; 3.71A {Saccharomyces cerevisiae}
Probab=57.74 E-value=4e+02 Score=28.67 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q FD01850236_028 53 EKIAQIQTARDKIDKALE---PLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQ- 128 (333)
Q Consensus 53 ~ee~~L~~~A~~v~~~l~---~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie- 128 (333)
.+.+.+.+.-.++.+.|. .-..+..+.+.+..+.|...+ ......+-.-...+....+.+++.+++.+
T Consensus 278 ~~l~~~i~~q~~~~~~L~~~~~~~~~~i~~l~~dv~~L~~~l--------~~~~~~L~~d~~~i~~lk~~~~~~~~~a~~ 349 (472)
T 7WOO_G 278 EQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVAYLLKSE--------SATSQYLKQDLKKISSFKSLIDEDLLDTQT 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHcHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHh-----------------------
Q FD01850236_028 129 --ELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQY-EQIKQAL----------------------- 182 (333)
Q Consensus 129 --~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~-~~lK~~L----------------------- 182 (333)
+.+....... ..+...++...-.++..+++..|..+-+..-.|..+ ..|.+.+
T Consensus 350 ~~~~~~~l~~~~-~~~~~~~l~~~f~~~~~~~~~~L~~~~~~l~~le~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (472)
T 7WOO_G 350 FSVLLQQLLTPG-SKISSNDLDKFFQKKIHLYEKKLEDYCRILSDIETAVNGIDTDLFGAPNNPNSTAITADLGSSEAEN 428 (472)
T ss_dssp HHHHHHHHHSSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTCCCTTTTSSSSSSS
T ss_pred HHHHHHHhcCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhccccCCchHHH
Q ss_pred ----CCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 183 ----GLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 183 ----GlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k 219 (333)
....+.|++--++.- ..|..++.++..+-.-++.++
T Consensus 429 ~~~~~~~~~~i~~~l~~q~-~~~~~la~~~~~l~~~v~~l~ 468 (472)
T 7WOO_G 429 LLQLKTGLAAIVSTVIEEF-TLFMDIAERIAVLHQKTKTLA 468 (472)
T ss_dssp TTTSSSCSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
No 34
>PF04048.18 ; Sec8_N ; Exocyst complex component Sec8 N-terminal
Probab=57.57 E-value=1.2e+02 Score=27.24 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q FD01850236_028 65 IDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISG 144 (333)
Q Consensus 65 v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~ 144 (333)
++..|.....+-...+.+.|..+...+ .....+|.+-.---..+.+..+.+.+.|+++-..|.+.|...
T Consensus 2 l~~vl~~i~~~W~~l~~~~fnpl~~al-----~lld~ss~g~~~~~~~f~~~~~~~~~~L~~~V~~h~~~fn~s------ 70 (142)
T A5E514_LODEL/2 2 LKMIHNEIKYDWPQILQSNANPIEVAV-----AFLDDTSVGLAHRLKEFSGFKRRTEGVLRHVVDEHYELFSNS------ 70 (142)
T ss_pred HHHHHHHHHHhHHHHccCCCCHHHHHH-----HhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHhCCCHHHHHhccHhhC-CccCchHHHHHHHHHHH
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKEQLNLKQY-EQIKQALGLSTKSIMHKWDQTG-VRDIEGYASYIEKSAKL 214 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~-~~lK~~LGlStKSivH~W~~~g-~g~Ipgya~~i~~vak~ 214 (333)
=..|.+.-..++.--.+.-.++.. ..-|+.|......+-.-|.+.- ...+=.+=+.|+.+.++
T Consensus 71 -------I~~y~~i~~~i~~s~~~v~~lr~~L~~~k~~L~~~~~~L~~Lw~~~~~~~~~l~iL~~Ie~l~~v 135 (142)
T A5E514_LODEL/2 71 -------IGSYHMLLSSLNQSKQDSKEIKEFLELSKKEVSDRSSLLAELAQSSARYEEMIEILDAIKLLNNV 135 (142)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 35
>3WXX_H AopB; Translocator, Membrane protein-Chaperone complex; HET: MSE; 2.7A {Aeromonas hydrophila}
Probab=57.04 E-value=1.8e+02 Score=28.91 Aligned_cols=170 Identities=11% Similarity=-0.052 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIM 190 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSiv 190 (333)
....+.+..+...++.+-+.+-... .. ..+..++|...=..|..+|++...+..+..+.......-++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~p~L~-~~-~~~s~~~l~~~L~~l~~kl~~~q~~~~~~~I~~~~~~~~~~~--------- 94 (219)
T 3WXX_H 26 DQLRKTAQLGTANAAKLLGSSTLLN-KL-AFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKI--------- 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCCS-SC-SSSCCCCCCC----------------CHHHHHHHHHHTHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc-cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred hccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHH
Q FD01850236_028 191 HKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFG 270 (333)
Q Consensus 191 H~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~G 270 (333)
+.-...|+...+..+...|+..+-|.+|||+..++...+...|-. |...
T Consensus 95 ----~e~~~Ki~Ea~eka~kAkk~g~~~KIfgwI~a~~svV~ga~~iat---------------------------Gvga 143 (219)
T 3WXX_H 95 ----DENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIAT---------------------------GVGA 143 (219)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHSSCHHHHSTTSCHHHHHHHHHHHHHH---------------------------HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhH
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC-------------chhHHHHHHHhccchhHHHHHHHHHHHHH
Q FD01850236_028 271 GIAGGAIGRSACMWVMGLLTSEGG-------------GIGAGLCLVVGIGSGIAGGKIVERFGENA 323 (333)
Q Consensus 271 g~~g~~~a~~iC~~~lG~~~~~t~-------------G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~ 323 (333)
...+...+.++++++..++. .++ |...+.|.++..++..+-++.|+..+..+
T Consensus 144 ~aga~liA~gv~~lv~~~~~-~a~~~~~i~e~~~~~~g~a~m~~~ia~avv~~~~s~g~~aa~~~a 208 (219)
T 3WXX_H 144 AVGAMMIVGGAVGVANMAIQ-QAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAM 208 (219)
T ss_dssp HHHHHHHHCTTTHHHHHHCC-C---------CCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
No 36
>PF11981.12 ; DUF3482 ; Domain of unknown function (DUF3482)
Probab=56.45 E-value=27 Score=35.34 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eccchhh--HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHH
Q FD01850236_028 256 EYSKFGG--KQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVE 317 (333)
Q Consensus 256 E~g~f~G--~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg 317 (333)
|.-+..| ...|.+.|+.+| +++.+ .++|.++..-.++ ++.+|+..+.
T Consensus 139 ~~~~~~Gl~~~~gaa~GAa~G---------a~iDl---~~GGlSlG~ga~i---Ga~iGg~~~~ 187 (289)
T F4GNE8_PUSST/1 139 QALKDVGIHVGKGMAAGAMAG---------ATLDA---FTAGLSLGTATLL---GAAAGGLWQG 187 (289)
T ss_pred hHHHHcccchHHHHHHHHHHH---------HHHHH---hcccccHHHHHHH---HHHHHHHHHH
No 37
>7BUL_A General transcription factor IIH subunit 1; DNA repair factor, general transcription factor, nucleotide excision repair, NUCLEAR PROTEIN; NMR {Homo sapiens}
Probab=53.27 E-value=36 Score=31.42 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q FD01850236_028 125 NEIQELYKKTYSQNSGRISGEEFFGQRERLFK 156 (333)
Q Consensus 125 ~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~ 156 (333)
.+|.++|++.+.. |.++.++|.+.|..|+.
T Consensus 125 ~~L~~l~~~LV~~--g~lse~EFW~~r~~ll~ 154 (161)
T 7BUL_A 125 PVLFQLYKDLVVS--QVISAEEFWANRLNVNA 154 (161)
T ss_dssp HHHHHHCCCCCTT--TSSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhc--CCCCHHHHHhHHhHHhh
No 38
>8SNB_6R RIB35; sperm, doublet microtubule, DMT, microtubule inner protein, cilia, flagella, FAP, CFAP, MIP, MAP, cytoskeleton, tublin, sea; HET: GDP, MG, GTP; 3.3A {Strongylocentrotus purpuratus}
Probab=53.03 E-value=1.5e+02 Score=30.57 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=0.0 Template_Neff=2.200
Q ss_pred HHHHHHHHHHHHHHhcCCHHHH------------HHHHHCHHHHHHHHhh--hccccccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEA------------KLLYENRTPIDMFSSN--IYSDALGQSGDIFGYIKDAGGGYYEEIN 121 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea------------~fl~~~~~~l~~~~~~--~~~d~~~~~s~~~G~~~~~~~~~l~~I~ 121 (333)
+.|-+.-++.-+.+..|-+|.. .||..|-.--..++.+ -+=+--+.+-.+.--.---..+|+++|+
T Consensus 40 d~l~~~Lqelg~~v~~LRpEvd~NkEY~VDGPLVRFLTA~v~KakaViqEikRtCSe~sa~~nG~ey~~~H~~qH~~dI~ 119 (310)
T 8SNB_6R 40 ERSWEVLNRLGQMVSDLRPEVKGNKEYWVDGPLVKFLTANVLKAKSVLQEMKRTCSQKSAATNGPEYIERHLLQHVEDIR 119 (310)
T ss_pred HHHHHHHHHHHHHHHhhCHhhcCCceeEecchHHHHHHHHHHHHHHHHHHHHHHHchHhHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q FD01850236_028 122 KVLNEIQELYKKTY 135 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~ 135 (333)
.+|++||.-|++++
T Consensus 120 svleeLe~~yk~tv 133 (310)
T 8SNB_6R 120 TSLEELETYHQQTL 133 (310)
T ss_pred HHHHHHHHHHHccc
No 39
>6S7O_E Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; N-glycosylation, Oligosaccharyltransferase, OSTA, TRANSFERASE; HET: NAG, KZE, MAN, EGY, BMA, KZB; 3.5A {Homo sapiens}
Probab=52.14 E-value=2.9e+02 Score=30.94 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
......|++.-.++.+.|.++..+-.+.=-+..+.++.+- ...+.++++.+.|.+++.-|
T Consensus 513 ~~~~~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~i~~le--------------------~~e~e~~~~~~~l~~~~~~y 572 (607)
T 6S7O_E 513 NSGKKSLETEHKALTSEIALLQSRLKTEGSDLCDRVSEMQ--------------------KLDAQVKELVLKSAVEAERL 572 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSHHHHHHHHHHHH--------------------HHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNL 172 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl 172 (333)
++ |++...+|-..++.+-++++...+++-+-...|
T Consensus 573 ~~------gkisr~~y~kl~~~~~k~i~k~~~~i~~~l~~l 607 (607)
T 6S7O_E 573 VA------GKLKKDTYIENEKLISGKRQELVTKIDHILDAL 607 (607)
T ss_dssp HH------HHHHHHHHHHHHHHHHHHCC-------------
T ss_pred Hc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 40
>4UT1_A FLAGELLAR HOOK-ASSOCIATED PROTEIN; MOTOR PROTEIN, ANTIGEN, EPITOPE DISCOVERY; HET: EDO; 1.8A {BURKHOLDERIA PSEUDOMALLEI K96243}
Probab=50.75 E-value=3.2e+02 Score=31.43 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh-hcc------------------ccccchhHHHHHHHHHH
Q FD01850236_028 53 EKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSN-IYS------------------DALGQSGDIFGYIKDAG 113 (333)
Q Consensus 53 ~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~-~~~------------------d~~~~~s~~~G~~~~~~ 113 (333)
.+.+...+..+++...+.+.+..-...|.+.|.-++.+..+ ... ..+..-...--.+...+
T Consensus 90 ~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~a~~~la~~P~~~~~R~~v~~~a~~La~~~n~~~~~L~~l~~~~~~~i 169 (673)
T 4UT1_A 90 SSLSTYYTLVAQLNNYVGSPTAGIATAITNYFTGLQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQL 169 (673)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 114 GGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILN 163 (333)
Q Consensus 114 ~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~ 163 (333)
...+++|++.|++|.++=++-.....+.-...+...||.+|+++|-..++
T Consensus 170 ~~~v~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRd~ll~eLS~~v~ 219 (673)
T 4UT1_A 170 TDTVTQINSYTSQIAQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAG 219 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHcC
No 41
>PF05461.15 ; ApoL ; Apolipoprotein L
Probab=50.61 E-value=1.9e+02 Score=29.20 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcce
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGY 223 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGy 223 (333)
+.|-.+++.-.++++..+..|.+..-.++ ++...-+.+....+.+...+++.- +...+.|..+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~~iad~ld~~-- 81 (298)
T F6VUH9_HORSE/1 8 ERFVAEADLSREEADALREGLNEMNTDVAMEDKVMIQKDQENTKKFLDKFPQVK----RELEERIGKLHALADKVDKV-- 81 (298)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhHhhHhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--
Q ss_pred eeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHH
Q FD01850236_028 224 VGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLV 303 (333)
Q Consensus 224 vgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~i 303 (333)
+++++.....+-+.+++||+++ .+| +++.. .|.|.++.++.+
T Consensus 82 -------------------------~k~~~ia~~~g~~~~ivgg~~~-i~G---------~~lap---~t~G~sl~l~~~ 123 (298)
T F6VUH9_HORSE/1 82 -------------------------HRDCTISNVVANSTGAVAGVLT-FLG---------LALAP---VTAGVSLALSAT 123 (298)
T ss_pred -------------------------HHhccHhhHhhhhhHHHHHHHH-HHH---------HHHHH---hccchHHHHHHH
Q ss_pred HhccchhHHHHHHHHHHHHHHHHH
Q FD01850236_028 304 VGIGSGIAGGKIVERFGENAGESL 327 (333)
Q Consensus 304 v~~~~~~~G~~~Gg~~G~~~Ge~~ 327 (333)
. ++..++-.....+..+.+..
T Consensus 124 G---~~~g~~g~~~~~~a~i~~~~ 144 (298)
T F6VUH9_HORSE/1 124 G---IGLGAAAGVTTVSTSIVEYS 144 (298)
T ss_pred H---HHHHHHHHhhhhHHHHHHHH
No 42
>3RH3_A Uncharacterized DUF3829-like protein; All alpha protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-Biology, UNKNOWN; HET: EDO, MSE; 2.1A {Bacteroides thetaiotaomicron}
Probab=50.13 E-value=3.8e+02 Score=26.21 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCh
Q FD01850236_028 108 YIKDAGGGYYEEINKVLNEIQELYKKTYSQNSG-----------RISGEEFFGQRERLFKQLDGILNKFSKEQL-NLKQY 175 (333)
Q Consensus 108 ~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G-----------~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~-gl~~~ 175 (333)
.....+...++.+...+++++.-|.. |... . .-.-++|+..++.++..++..-...-+..+ ..|..
T Consensus 84 ~~~~~~~~~~~~l~~~~~el~~Yy~~-YkdD-~~aKg~~l~~~l~~~~~~~~~a~~~~~~~i~~~~~~~~~~~L~~~~~k 161 (264)
T 3RH3_A 84 NLKQNYAGLFNVRTQFYDNFNKFLAY-KKSK-DTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTEQAESELLADEPLK 161 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhccCchH
Q ss_pred HHHHHHhCC--CHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 176 EQIKQALGL--STKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 176 ~~lK~~LGl--StKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k 219 (333)
..+-.++.+ ..+.++..+......+...+...++.+.+...-++
T Consensus 162 ~~~~~~~~~~~~a~~i~~~l~~~~~~d~~~~~~~~~~l~~~~~~~~ 207 (264)
T 3RH3_A 162 DQIMAMRKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKELKAAE 207 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHHHHHHh
No 43
>7T62_A Glypican-2; Glypican-3 complex, IMMUNE SYSTEM; 21.0A {Homo sapiens}
Probab=47.88 E-value=6.5e+02 Score=28.61 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred hHHHHHHHHHCCCC-----CcCCCcEEEe--cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHh
Q FD01850236_028 21 SGVKELYHQLNPEK-----KKKPGSILVV--ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSS 92 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-----~v~pGqivIl--~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~ 92 (333)
.+++..|...+-.+ ....|+=+-| .++.+=. ..|+.....+.+.....++.-+..-...+..+..-++.+.
T Consensus 15 ~~vr~~~~~~~~~~~~vP~~~~~g~~L~iC~~~~TCCt~~mE~~l~~~s~~~~~~~l~~~~~~L~~~l~~~~~~f~~~f- 93 (561)
T 7T62_A 15 AETRQVLGARGYSLNLIPPALISGEHLRVCPQEYTCCSSETEQRLIRETEATFRGLVEDSGSFLVHTLAARHRKFDEFF- 93 (561)
T ss_dssp HHHHHHHHTTTCCGGGSCSSCCSSCCCSSSCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCChhhCCCCcCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH-
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Q FD01850236_028 93 NIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI-QELYKKTYSQNSGRISGEEFFGQRERLFK----QLDGILNKFSK 167 (333)
Q Consensus 93 ~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I-e~ly~~~~~~~~G~l~~~~F~a~R~~Lf~----~LD~~L~~~~r 167 (333)
...++.-++.|.++ .+.|...|.++ .-.-.+||.+-+..+. .|+..|+.|..
T Consensus 94 ---------------------~~ll~~se~~l~~mF~~tYg~ly~qn--~~if~~lF~~L~~y~~~~~~~L~~~l~~FF~ 150 (561)
T 7T62_A 94 ---------------------LEMLSVAQHSLTQLFSHSYGRLYAQH--ALIFNGLFSRLRDFYGESGEGLDDTLADFWA 150 (561)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTTHHHHTT--HHHHHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred ---------------------HHHHHhhHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q ss_pred Hhc
Q FD01850236_028 168 EQL 170 (333)
Q Consensus 168 ~~~ 170 (333)
..+
T Consensus 151 ~Lf 153 (561)
T 7T62_A 151 QLL 153 (561)
T ss_dssp HHH
T ss_pred HHH
No 44
>PF11254.12 ; DUF3053 ; Protein of unknown function (DUF3053)
Probab=47.71 E-value=1.4e+02 Score=29.73 Aligned_cols=152 Identities=12% Similarity=0.118 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHCHHHHHHHHhhhcccccc----chhHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLL---YENRTPIDMFSSNIYSDALG----QSGDIFGYIKDAGGGY 116 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl---~~~~~~l~~~~~~~~~d~~~----~~s~~~G~~~~~~~~~ 116 (333)
+|.+..+ .+-.++|+.-.-.-...+-.||++|.+.| .+||++|..|- . .....+-...... ..
T Consensus 14 gdkEpeQRkAFI~fLQtri~~~g~~vP~Lt~~qkkaFG~Ya~~YaVlt~F~--------~~~~~~m~~~~~p~~~~~-~~ 84 (219)
T Q7CFP6_YERPE/1 14 GDKELEQRKAFIDYLQNTVMRSGMKLPTLSEDQKQKFGPYVSDYAILVTFS--------QQLSKSVDASLVPAIEQI-NQ 84 (219)
T ss_pred CCCcHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHhccHHHHHHHHHHHH--------HHHHHHHHHcchhHHHHH-Hc
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhh
Q FD01850236_028 117 YEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQT 196 (333)
Q Consensus 117 l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~ 196 (333)
+..+++.+..=+.+=+.. +.| ..+-.+||....+--.....|...++||....=--..+|-+=...
T Consensus 85 irs~~d~~~rR~~L~~~~-----~~l---------~~~~~~l~~a~~~Ad~araaLkQP~DLk~VYd~AY~k~Vt~Pa~~ 150 (219)
T Q7CFP6_YERPE/1 85 IRVAQDYLSKRDALQQSA-----GAL---------NLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIVTQPANV 150 (219)
T ss_pred CCCHHHHHhcHHHHHHHH-----HHH---------HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhccccHHh
Q ss_pred CCccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 197 GVRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 197 g~g~Ipgya~~i~~vak~ak~~k 219 (333)
-..-+|....-++.+-+++.|++
T Consensus 151 ~~~~~p~~~~~~~~~l~v~dfl~ 173 (219)
T Q7CFP6_YERPE/1 151 LIPAVPVVSSFVQDLVQVGDFLQ 173 (219)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
No 45
>2F6M_D Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, Vps23, Vps28, Vacuole Protein Sorting, ESCRT protein complexes, Endosomal Sorting Complex Required for; HET: DDQ; 2.1A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=47.61 E-value=2e+02 Score=25.27 Aligned_cols=68 Identities=19% Similarity=0.398 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHHHHhc
Q FD01850236_028 119 EINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKSIMHK 192 (333)
Q Consensus 119 ~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKSivH~ 192 (333)
.|-.+|+.+|++|.+ +.+..++|-.+-.+|+.|....+..+....+ .+|+.+..-+..+++-..-+|+
T Consensus 36 sii~tle~LEka~~r------d~I~~~eY~~~C~~Li~qyk~~~~~l~~~~~~~~~~~i~~F~~~y~l~cp~A~~R 105 (109)
T 2F6M_D 36 SIVITLDHVEKAYLK------DSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITR 105 (109)
T ss_dssp HHHHHHHHHHHHHHT------TSSCHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHSCSSTHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc------cCCCHHHhHHHHHHHHHHHHHHHHHCChhHHHHhcCCHHHHHHHhCCCChHHHHH
No 46
>7TDZ_s Nup214; Nuclear pore complex, NUCLEAR PROTEIN; 6.9A {Xenopus laevis}
Probab=47.47 E-value=2.2e+02 Score=37.49 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHH----HHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINK----VLNEI 127 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~----~L~~I 127 (333)
......+.....++.+. +.|++.-++.|.+-++.++++- ..-.-..=.+.+-|.+|.++=++ .+-+.
T Consensus 788 ~k~~~~~Dp~~~~ll~~-~~l~~~~e~~l~~l~~~l~~l~--------~qL~ev~~~Ld~~W~~~~~ek~~~~~~~ip~~ 858 (2037)
T 7TDZ_s 788 QRNKLKQDPKYLQLLYK-KPLDPKSETQMQEIRRLNQYVK--------NAVQDVNDVLDLEWDQYLEEKQKKKGIIIPER 858 (2037)
T ss_pred HHHHHhcCHHHHHHhhc-cCCCHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCChHHHHHHhCCCHHHHH
Q FD01850236_028 128 QELYKKTYSQNSGRISGEEFFGQRERLFKQLDGIL--NKFSKEQLNLKQYEQIKQALGLSTKSIM 190 (333)
Q Consensus 128 e~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L--~~~~r~~~gl~~~~~lK~~LGlStKSiv 190 (333)
|..|+ ++++| .+-..++++++.||+..| .++....+...+..+.++.++.+..++.
T Consensus 859 e~vy~-tl~~h------~~i~~~q~~~l~qL~~k~k~l~~~s~~~~~~~~~~~~~~~~~~~~~L~ 916 (2037)
T 7TDZ_s 859 ETLFN-SLANH------QEIINQQRPKLEQLVENLQKLRLYNQISQWNVPDSSTKSFDVELENMQ 916 (2037)
T ss_pred HHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcCCcccchhHHHHH
No 47
>PF10439.13 ; Bacteriocin_IIc ; Bacteriocin class II with double-glycine leader peptide
Probab=47.37 E-value=44 Score=27.60 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred Eecc-------chhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHH
Q FD01850236_028 255 IEYS-------KFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKI 315 (333)
Q Consensus 255 ~E~g-------~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~ 315 (333)
++.| ...++.+++..++.++ .+..-..++. ..++.+.++|+++ ++.+|+++
T Consensus 29 I~GG~~~~~~~~~~~~~~~g~~~Ga~~----Ga~~G~~~~~---~~g~~G~~~Ga~~---Ga~~G~~~ 86 (86)
T B7GL22_ANOFW/1 29 IDGGRGSWTNAVIGAGTLSPIVASAVR----GAQQGVRFGR---LGGPWGVVAGAVV---GAVVGGYL 86 (86)
T ss_pred ccCCCccccccccccccchHHHHHHHH----HHhHhhhhcc---cccHHHHHHHHHH---HHHHhhcC
No 48
>6J6F_A Envelope glycoprotein; T.marenffei Mp1p, LIPID BINDING PROTEIN; 4.2A {Talaromyces marneffei PM1}
Probab=46.07 E-value=4.7e+02 Score=26.15 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q FD01850236_028 55 IAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGY--YEEINKVLNEIQELYK 132 (333)
Q Consensus 55 e~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~--l~~I~~~L~~Ie~ly~ 132 (333)
+..+++....++. ..+++++++..+...+.-+.... ...-..+-.--..+.+. -..|...|+.++..+.
T Consensus 204 ~~~l~~~~~~~~~-~~~ls~~da~~i~~~~~~l~~~~--------~~~l~~l~~kk~~~~~~~~~~~v~~~L~~l~~~~~ 274 (313)
T 6J6F_A 204 IKATLDGVQSLQN-EPPLSSMEALALVGPVQDLSNQI--------LLAIQNLIDKKEPLVQAGFGGKVENNLRQQEEAAQ 274 (313)
T ss_dssp HHHHHHHHHHTTS-CCCCCHHHHHHHHSHHHHHHHHH--------HHHHHHHHHTTHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcHHHHHHCCCcHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 133 KTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 133 ~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
.....- ....+++....=+.+..+++..|.+
T Consensus 275 ~l~~al-~~k~p~~~~~~a~~~~~~i~~~f~~ 305 (313)
T 6J6F_A 275 KLSELV-STKVPHELADISRQLSDGIAAGIKK 305 (313)
T ss_dssp HHHHHH-HHHCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH
No 49
>6H7W_O Putative vacuolar protein sorting-associated protein; retromer, endosome, sorting nexin, BAR, membrane trafficking, PROTEIN TRANSPORT; 11.4A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
Probab=44.76 E-value=3.5e+02 Score=24.18 Aligned_cols=123 Identities=11% Similarity=0.170 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHH----HHHHHHHHHHH
Q FD01850236_028 47 PLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIK----DAGGGYYEEIN 121 (333)
Q Consensus 47 P~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~----~~~~~~l~~I~ 121 (333)
|.... ..+...+.+........+..|...-...+.+..++-..+. ..+........ ......+..+.
T Consensus 1 ~~~~e~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~l~~~~~~l~~~e~~~~l~~~~~~~~ 72 (220)
T 6H7W_O 1 NKFVEQDDWFHDRRVYLDALENQLKALLKAMDNMVAQRKAMAEAAA--------DFSASLHALSTVELSPTLSGPLDALS 72 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHcccCChhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 122 KVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
+.+.++...+....... ...|...=+.+...+...-.-+-++.--+.++..+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 128 (220)
T 6H7W_O 73 ELQLAIRDVYERQAQQD-----VLTFGIIIEEYIRLIGSVKQAFSQRQKAFHSWHSAESEL 128 (220)
T ss_dssp HHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 50
>2CAZ_B VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS28; PROTEIN TRANSPORT, ESCRT, MVB, MULTIVESICULAR BODIES, ENDOSOME, LYSOSOME, PH DOMAIN, PROTEIN SORTING, VESICLE TRAFFICKING, UBIQUITIN, PHOSPHOINOSITIDE; 3.6A {SACCHAROMYCES CEREVISIAE} SCOP: a.2.17.2
Probab=44.66 E-value=2.2e+02 Score=26.97 Aligned_cols=76 Identities=20% Similarity=0.383 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHHHHhccHhhC
Q FD01850236_028 120 INKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKSIMHKWDQTG 197 (333)
Q Consensus 120 I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKSivH~W~~~g 197 (333)
|-.+|+.||++|.+ +.+..++|-.+-.+|+.|....+..+....+ .+|+.....+..+++-..-+++-+. |
T Consensus 54 II~tlE~LEkAyvr------d~I~~~eYt~~C~rLI~Qykt~~~~l~~~~~~~~f~sle~F~~~Y~ldcp~A~~RLk~-G 126 (155)
T 2CAZ_B 54 IVITLDHVEKAYLK------DSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRLER-G 126 (155)
T ss_dssp HHHHHHHHHHHHTT------TSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHTCSHHHHHHHTTCCCTTHHHHHHS-C
T ss_pred HHHHHHHHHHHHhc------cCCCHHHhHHHHHHHHHHHHHHHHhcChhHHHHhcCCHHHHHHHhCCCChHHHHHHhc-C
Q ss_pred -CccCc
Q FD01850236_028 198 -VRDIE 202 (333)
Q Consensus 198 -~g~Ip 202 (333)
+..|+
T Consensus 127 vPaTve 132 (155)
T 2CAZ_B 127 IPITAE 132 (155)
T ss_dssp CSCC--
T ss_pred CCCeee
No 51
>4UY3_A SEPTATION RING FORMATION REGULATOR EZRA; STRUCTURAL PROTEIN, DIVISOME, FTSZ, CELL WALL, TUBULIN, SPECTRIN, Z-RING; 2.6A {STAPHYLOCOCCUS AUREUS}
Probab=44.33 E-value=4.2e+02 Score=25.01 Aligned_cols=104 Identities=9% Similarity=-0.001 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHH------HHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEA------KLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLN 125 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea------~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~ 125 (333)
......+......+...|..+...+. ..+.+.|.-+...+ ..-+...|.+...+...++.|++.+.
T Consensus 89 ~~~l~~~e~~~~~l~~~l~~l~~~e~~~r~~i~~lk~~y~~~rk~l--------~~~~~~~g~~~~~le~~l~~ie~~f~ 160 (198)
T 4UY3_A 89 NELMDSYEQSYQQQLEDVNEIIALYKDNDELYDKCKVDYREMKRDV--------LANRHQFGEAASLLETEIEKFEPRLE 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCSGGGGGGHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHchhchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q FD01850236_028 126 EIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQY 175 (333)
Q Consensus 126 ~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~ 175 (333)
+++.+-.+ -. |.+=+.++.+|+..+..+-...=.+|..
T Consensus 161 ~~~~l~~~---gd---------~~~A~~~l~~i~~~i~~l~~~l~~lP~~ 198 (198)
T 4UY3_A 161 QYEVLKAD---GN---------YVQAHNHIAALNEQMKQLRSYMHGSSGN 198 (198)
T ss_dssp HHHHHHHT---TC---------HHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHc---CC---------HHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 52
>PF09577.14 ; Spore_YpjB ; Sporulation protein YpjB (SpoYpjB)
Probab=43.65 E-value=4e+02 Score=25.19 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHCHHHHHHHHhh-hccccccchhHHHHHHHHHHHH-H
Q FD01850236_028 44 VADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEA----KLLYENRTPIDMFSSN-IYSDALGQSGDIFGYIKDAGGG-Y 116 (333)
Q Consensus 44 l~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea----~fl~~~~~~l~~~~~~-~~~d~~~~~s~~~G~~~~~~~~-~ 116 (333)
+..|..+. ......|+..-+++..++..-+.+.+ +.+.++|+.|.-.+.- ...+.+..-...+..+...... .
T Consensus 87 l~~~~~plw~~~~~~l~~~l~~~~~a~~~~d~~~a~~~~~~~~~~w~~i~pav~~~~s~~~~~~ies~l~~l~~~~~~~~ 166 (229)
T Q9KC97_HALH5/3 87 IVSEHHPLWLHSETSIMHALTRMKEAIQTEDHQGFQHRLNEFLNHYQMIRPSLTITLEPAHLQQVESQVSYMENFRMERS 166 (229)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhHhhhhhcCCCHHHHHHHHHHHHHHHhhcccCC
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q FD01850236_028 117 YEEINKVLNEIQELYKKTYSQNSGRISGEEFF 148 (333)
Q Consensus 117 l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~ 148 (333)
.+.+...|+.++......|....-.-..+.|+
T Consensus 167 ~~~~~~~L~~l~~~l~~lf~~~~~~~~~~~~~ 198 (229)
T Q9KC97_HALH5/3 167 ADEVENHLNLMEETFTALFAQVKEDSADPSLL 198 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCChhHH
No 53
>5XSJ_L Signal transduction histidine kinase, LytS; Two component system, histidine kinase, signal transmission across the membrane, D-xylose uptake, SUGAR BINDING PROTEIN; HET: XYP; 2.202A {Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)}
Probab=42.88 E-value=3.6e+02 Score=23.88 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhh
Q FD01850236_028 117 YEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQT 196 (333)
Q Consensus 117 l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~ 196 (333)
+.++...++++.....+.+... +++-..+=..-+++|+..+..+... .+ ++..-+.+.|.=...++....+++
T Consensus 22 ln~~~~~~~~~~~~l~~Yl~~~-----s~~~l~~y~~~~~~l~~~~~~L~~~-~~-~e~~~~~~~i~nm~~sy~~~~~~~ 94 (148)
T 5XSJ_L 22 TNEIKQHVDSSLDNFNQYILNG-----TPSKKESYNNEVILAKQKIGNLKKN-SD-DVNQYILRDLDNTLDSYIESSKNT 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHT-CC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHHHHHHhhhcC-CC-chhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred C----CccC-chHHHHHHHHHHHHHHHh
Q FD01850236_028 197 G----VRDI-EGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 197 g----~g~I-pgya~~i~~vak~ak~~k 219 (333)
- .+.+ +.|..++..+-+...++.
T Consensus 95 i~~~~~~~~~~~y~~~y~e~~~i~~yI~ 122 (148)
T 5XSJ_L 95 ISAYENKEGYVFYYDDFVAAKNIASYCD 122 (148)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHH
No 54
>3OGI_C Putative ESAT-6-like protein 6; Structural Genomics, PSI-2, Protein Structure Initiative, Integrated Center for Structure and Function Innovation, ISFI, TB Structural; HET: MSE; 2.549A {Mycobacterium tuberculosis}
Probab=42.35 E-value=2.8e+02 Score=22.44 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKT 134 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~ 134 (333)
..|...+..+......+...-.+.-..--.+-+..- +.++......-..|...++++.+.|.++....++.
T Consensus 8 ~~l~~~a~~l~~~~~~i~~~~~~l~~~~~~l~~~W~--------G~a~~af~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 78 (101)
T 3OGI_C 8 GDVDAHGAMIRAQAGLLEAEHQAIVRDVLAAGDFWG--------GAGSVACQEFITQLGRNFQVIYEQANAHGQKVQAA 78 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHTGGGTT--------CTTSHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 55
>8AX9_A Maltose/maltodextrin-binding periplasmic protein,Apolipoprotein E; Apolipoprotein E, LIPID BINDING PROTEIN; 1.549A {Homo sapiens}
Probab=42.09 E-value=7.2e+02 Score=27.10 Aligned_cols=101 Identities=9% Similarity=0.030 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..-...|.+..+++++.|.+...+..+.+.++.+-+..-+ ...+.-....+..+++.+++.|....+..
T Consensus 518 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 586 (675)
T 8AX9_A 518 RKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL-----------GPLVEQGRVRAATVGSLAGQPLQERAQAW 586 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKE 168 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~ 168 (333)
++.+... .+++-.+-..+..+|+..+..+-.+
T Consensus 587 ~~~l~~~-----~~~~~~~l~~~~~~~~~~~~~l~~~ 618 (675)
T 8AX9_A 587 GERLRAR-----MEEMGSRTRDRLDEVKEQVAEVRAK 618 (675)
T ss_dssp -------------------------------------
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
No 56
>4OPC_A Conserved Archaeal protein; Rossmann Fold, Oxidoreductase, Archaeal Protein; HET: PGT, FDA; 1.4A {Sulfolobus acidocaldarius}
Probab=42.01 E-value=3.1e+02 Score=29.54 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHC-----HHHHHHHHhh--hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 59 QTARDKIDKALEPLTNEEAKLLYEN-----RTPIDMFSSN--IYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 59 ~~~A~~v~~~l~~Ls~~ea~fl~~~-----~~~l~~~~~~--~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
+..-+-.+..|+.||+++.+|.++| -|+++..... ..+-.---.-..=|..--..-..|..+.+-.+++.++|
T Consensus 345 ~a~~~~~r~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~y 424 (453)
T 4OPC_A 345 QASLDIFRRFLQKLSNDDINYGMKKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESMKKIKELY 424 (453)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTSSCHHHHHHHHHHCCCCHHHHHHHHHHTTTCCSCCGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHhHchHHHhcCCCCHHHHHHHHhcCCcCccHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
.+ |.+. ++.|-+=|+++-.-++...+++
T Consensus 425 ~~-yp~~-----~~~~~~w~~~~~~~~~~~~~~~ 452 (453)
T 4OPC_A 425 LN-YPRS-----PSSLGSWRREVDNVLTEFNKSL 452 (453)
T ss_dssp HT-CCSS-----GGGHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCC-----hhHHHHHHHHHHHHHHHHHHhh
No 57
>PF05277.16 ; DUF726 ; Protein of unknown function (DUF726)
Probab=41.89 E-value=1.1e+02 Score=31.61 Aligned_cols=66 Identities=18% Similarity=0.039 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHH-------HHHHhccchhHHHHHHHHHHHHHHHHHHhh
Q FD01850236_028 261 GGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGL-------CLVVGIGSGIAGGKIVERFGENAGESLGKV 330 (333)
Q Consensus 261 ~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~-------C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~ 330 (333)
.++++||++-+.-|+.+|+.+. .++|.+.+..++.+... ..++ .+..|++.++..+..+.+..++.
T Consensus 11 ~~~~~gg~~~~~tgglaap~i~-a~~~~~~~~~g~~~~a~~l~~~~g~~~~---~~~fg~~G~~~~~~~~~~r~~~i 83 (340)
T MIL1_YEAST/536 11 LAMVGGSLVLGLSGGLLAPVIG-GGIAAGLSTIGITGATSFLTGVGGTTVV---AVSSTAIGANIGARGMSKRMGSV 83 (340)
T ss_pred HHHHHHHHHHHHhHHhHHHHHH-HHHHHHHHHhcHHHHHHHHHHHHHhHHH---HHHHHHHhhhhhhhhHHHhcCcC
No 58
>8FEF_C MCE-family protein MCE1c; Membrane protein complex, ABC transporter, Virulence factor, Lipid transport, MEMBRANE PROTEIN; HET: UNL; 2.71A {Mycolicibacterium smegmatis MC2 155}
Probab=41.55 E-value=5e+02 Score=29.33 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh--hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSN--IYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQE 129 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~--~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ 129 (333)
..+.+.|...++++...|...+++-.+.+.+--.+++.+... .........+.....+...+... .++..+|++++.
T Consensus 190 ~~~L~~LL~~a~~v~~~L~~~~~ql~~ll~n~~~ll~~l~~~~~~l~~lL~~l~~~s~ql~~li~dn-~~L~~~L~~L~~ 268 (524)
T 8FEF_C 190 DEDVKKLLASANKVATVLGDRSTQVNQLLVNAQTLLAAVNERGRSVSLLLERVSSVSRQVEGFVDEN-PNLNHVLEQLRT 268 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHH
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 130 LYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 130 ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
.-...-... ..| .+.+..=...+..|...+..
T Consensus 269 v~~~L~~~~-~dL--~~~L~~l~~~~~~L~e~v~s 300 (524)
T 8FEF_C 269 VSDVLNERK-QDL--ADILTVAGKFITSLAEALAS 300 (524)
T ss_dssp HHHHHHHTH-HHH--HHHHHHTTSSHHHHTHHHHT
T ss_pred HHHHHHHcH-HHH--HHHHHHHHHHHHHHHHHHhc
No 59
>2DII_A TFIIH basal transcription factor complex p62 subunit; BTF2-p62, General transcription factor IIH polypeptide 1, Nuclear protein, Transcription regulation, structural genomics, NPPSFA, National Project; NMR {Homo sapiens} SCOP: a.240.1.1, l.1.1.1
Probab=41.39 E-value=75 Score=25.12 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q FD01850236_028 125 NEIQELYKKTYSQNSGRISGEEFFGQRERL 154 (333)
Q Consensus 125 ~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~L 154 (333)
.++.++|++.+.. |.++.++|.+.|+.+
T Consensus 27 ~~L~~L~~~LV~~--g~iseeEFW~~r~~~ 54 (61)
T 2DII_A 27 PVLFQLYKDLVVS--QVISAEEFWANRLNV 54 (61)
T ss_dssp HHHHHHHCCCCCT--TSSCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHhhhhhh
No 60
>PF20572.2 ; DUF6781 ; Family of unknown function (DUF6781)
Probab=41.30 E-value=5.4e+02 Score=25.45 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q FD01850236_028 61 ARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSG 140 (333)
Q Consensus 61 ~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G 140 (333)
+.+.++.++..|++.-..........|+... +-.-.....-++...+-|+.||.+|.+++..- .
T Consensus 73 a~~~l~~Av~Glddal~kaaea~klal~ea~---------------~~~~~f~~~dl~~~~~dL~~lE~~F~~tl~~~-a 136 (215)
T A0A0Q6MUY5_9BU 73 PEALLGKAFAGMDGALLQAVEAHRKALQQFV---------------DQGVGLQEKQLKGALADLEKMEDTFFSTVSKA-A 136 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 141 RISGEEFFGQRERLFKQLDGILNKFSKE 168 (333)
Q Consensus 141 ~l~~~~F~a~R~~Lf~~LD~~L~~~~r~ 168 (333)
.-.++.+-.+-+.|...+...-..+...
T Consensus 137 ~~~~~~~~~~l~~l~~h~~~~gt~~g~~ 164 (215)
T A0A0Q6MUY5_9BU 137 GSATEPLQGAWSQVLETMKLKGTDTGAQ 164 (215)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhHHHHHH
No 61
>7L7B_F RNA polymerase sigma factor SigA; fidaxomicin, Clostridioides difficile RNA polymerase, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR complex; HET: FI8;{Clostridia bacterium}
Probab=40.86 E-value=6.1e+02 Score=25.89 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCCCHHHHHHHhhCCCChHHHHHHHHHCCCC-----CcCCCcEEEe----cCCCCCCHHHHHHHHHHHHHHHHHHhcCCH
Q FD01850236_028 4 ELTTPKSYECELMVNPPSGVKELYHQLNPEK-----KKKPGSILVV----ADPLSRSPEKIAQIQTARDKIDKALEPLTN 74 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl-----~v~pGqivIl----~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls~ 74 (333)
+..+.+++...+ ..+.+......++..+. ++...+-..+ .++......+..........+..+|..|++
T Consensus 254 ~~~~~~ela~~~--~~~~~~~~~~~~~~~~~~sld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~ 331 (390)
T 7L7B_F 254 RDPKPEEIAKEM--EMTEDKVREIMKIAQDPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLND 331 (390)
T ss_dssp SCCCHHHHHHHH--TSCHHHHHHHHHHHCCCEETTCBCSSTTSCBTTTTCCCCSSCCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCHHHHHHHh--CCCHHHHHHHHHHhCCCccccCCCCCCCCCChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCH
Q ss_pred HHHHHHHHCH-------HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYENR-------TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 75 ~ea~fl~~~~-------~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
.++..+.-+| ..++.+. ..-+..-..+.....+-++.+++.+..
T Consensus 332 ~~r~vl~lr~~~~~~~~~t~~eIa--------~~lgis~~~vr~~~~ra~~kLr~~~~~ 382 (390)
T 7L7B_F 332 REQKVLKLRFGLEDGRARTLEEVG--------KEFDVTRERIRQIEAKALRKLRHPSRS 382 (390)
T ss_dssp HHHHHHHHHHTSSSCCCCCHHHHH--------HHHTCCHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHhCCCCCCcccHHHHH--------HHHCCCHHHHHHHHHHHHHHhcChhHh
No 62
>PF19180.4 ; DUF5862 ; Family of unknown function (DUF5862)
Probab=39.71 E-value=98 Score=25.13 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHH-HHHHHHHHHHHH
Q FD01850236_028 258 SKFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKI-VERFGENAGESL 327 (333)
Q Consensus 258 g~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~-Gg~~G~~~Ge~~ 327 (333)
|.+.|++.|...|..++...+..-- +.+|+ -+..++.++.. + ++..|++. |-..+.+.-...
T Consensus 1 Gai~G~~~g~~tG~~iGg~~gG~Gg-lg~G~---I~qlVG~i~G~-~---G~i~G~v~~G~~~g~d~~~~~ 63 (68)
T A0A095T1P9_9GA 1 GSILGAIDGFGTGAAVGGKYGGAGG-WIVGG---IAQLVGLTASA-V---GAGIGGYLYGGILGYEKAQAY 63 (68)
T ss_pred ChhHHHHHHHHHHHHHHHHHccCcc-chHhH---HHHHHHHHHHH-H---HHHHHHHHHHHHhCHHHHHHH
No 63
>2OTX_B Src kinase-associated phosphoprotein 2; NOVEL DIMERIZATION DOMAIN, PH DOMAIN, SIGNALING PROTEIN; 2.6A {Mus musculus} SCOP: b.55.1.1
Probab=39.68 E-value=1.8e+02 Score=25.25 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
++|++.|.+|+.--.+.++.. +| +..-..+|+.|+++|......
T Consensus 4 ~~~~~ll~~~~~fl~~~l~~e--~l-s~~~~~~~~~l~~~~~~~~~~ 47 (211)
T 2OTX_B 4 EEIRNLLADVETFVADTLKGE--NL-SKKAKEKRESLIKKIKDVKSV 47 (211)
T ss_dssp HHHHHHHHHHHCCCCCCTTTC--BC-CHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCC--Cc-cHHHHHHHHHHHHHHHhHHhh
No 64
>7NRC_A GCN1; Ribosome, Disome, GCN1, Translation, GAAC, ISR, Rbg2, Gir2; HET: 5CT; 3.9A {Saccharomyces cerevisiae S288C}
Probab=38.98 E-value=3.1e+02 Score=33.79 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred CCCCCCCHHHHHHHhhCCCChH--------HHHHHHHHCCCC-----CcCCCcEEEecCCCCCCHHHHHHHHHHHHH--H
Q FD01850236_028 1 VVPELTTPKSYECELMVNPPSG--------VKELYHQLNPEK-----KKKPGSILVVADPLSRSPEKIAQIQTARDK--I 65 (333)
Q Consensus 1 Iv~~~~s~~~l~~~Lf~~~~~~--------~~~~F~~LN~hl-----~v~pGqivIl~dP~~~~~~ee~~L~~~A~~--v 65 (333)
++++...++.|++.|-++.+.. ...+.+.|.+++ .+.|.=+-+|.|++++.......+-+.... .
T Consensus 188 mLKeLDgI~~LIqlLSDpDPdVvREAALLALGQLSedL~PvIQqY~dQVLP~LLELLsD~DDDrreAqRvLAEAILALnL 267 (1209)
T 7NRC_A 188 ALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQYLSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTT 267 (1209)
T ss_pred hHHhhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhHHhcHHHhhchHHHHHHHhcCCCchHHHHHHHHHHHHHHhhc
Q ss_pred HHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q FD01850236_028 66 DKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGE 145 (333)
Q Consensus 66 ~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~ 145 (333)
.+.++++-+...++|.+.+..++... +-.+.......=+.+..-|++|.+...+.|... .+
T Consensus 268 GdDfqpVLP~LLeLLqSpdP~IQEAA--------------LKALGKIAddsEErLrpyLdeVL~iLv~LLeDl-----He 328 (1209)
T 7NRC_A 268 GYGVKKLIPVAVSNLDEIAWRTKRGS--------------VQLLGNMAYLDPTQLSASVSTIVPEIVGVLNDS-----HK 328 (1209)
T ss_pred ccchhhhHHHHHHhhccCCHHHHHHH--------------HHHHHHHhcCCHHHHHhhHHhHHHHHHHHHhcC-----CH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHhCCCHHHHHh
Q FD01850236_028 146 EFFGQRERLFKQLDGILNKFSKEQLNLKQY-EQIKQALGLSTKSIMH 191 (333)
Q Consensus 146 ~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~-~~lK~~LGlStKSivH 191 (333)
+...-|.+.+.-|+.. .+.+|++.- +.|.+.++-+.....+
T Consensus 329 EVRrVAIEALETLSeI-----~RaLGLERLLpLLsd~LDDpdEIqA~ 370 (1209)
T 7NRC_A 329 EVRKAADESLKRFGEV-----IRNAAIQKLVPVLLQAIGDPTKYTEE 370 (1209)
T ss_pred HHHHHHHHHHHHHHHH-----HHhccHHHHHHHHHHhcCCchHHHHH
No 65
>7NRC_A GCN1; Ribosome, Disome, GCN1, Translation, GAAC, ISR, Rbg2, Gir2; HET: 5CT; 3.9A {Saccharomyces cerevisiae S288C}
Probab=38.76 E-value=1.9e+02 Score=35.26 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred CCCHHHHHHHhhCCCChHHHHHHHHHCCCC---CcCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHH-HHHH
Q FD01850236_028 5 LTTPKSYECELMVNPPSGVKELYHQLNPEK---KKKPGSILVVADPLSRSPEKIAQIQTARDKIDKALEPLTNEE-AKLL 80 (333)
Q Consensus 5 ~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl---~v~pGqivIl~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls~~e-a~fl 80 (333)
..++-.+..+||+.. .++.+|.|..+ .+-.|--+.+ ..+++.+.. +-+.|++-+|.. +++.
T Consensus 150 Geiivpv~~~lL~a~----~DW~kRhAAlMALAvMAEGCSVsm-------LKeLDgI~~----LIqlLSDpDPdVvREAA 214 (1209)
T 7NRC_A 150 GDYLGILMEKLLNPT----VASSMRKGAAWGIAGLVKGYGISA-------LSEFDIIRN----LIEAAEDKKEPKRRESV 214 (1209)
T ss_pred cchHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHccCchhh-------HHhhhHHHH----HHHHhcCCCCchHHHHH
Q ss_pred HHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHHHH
Q FD01850236_028 81 YENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFG--QRERLFKQL 158 (333)
Q Consensus 81 ~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a--~R~~Lf~~L 158 (333)
...+..|...+ ...+.....+.+..+.+.|++++..+.+..+.. ...++. .++.+..-|
T Consensus 215 LLALGQLSedL--------------~PvIQqY~dQVLP~LLELLsD~DDDrreAqRvL-----AEAILALnLGdDfqpVL 275 (1209)
T 7NRC_A 215 GFCFQYLSESL--------------GKFFEPYVIEILPNILKNLGDAVPEVRDATARA-----TKAIMAHTTGYGVKKLI 275 (1209)
T ss_pred HHHHHHHHHHh--------------HHhcHHHhhchHHHHHHHhcCCCchHHHHHHHH-----HHHHHHhhcccchhhhH
Q ss_pred HHHHHHHHHHhcCCCCh--HHHHHHhCCCHHHHHhccHh--------hC--CccCchHHHHHHHHHHHHHHHhhcc
Q FD01850236_028 159 DGILNKFSKEQLNLKQY--EQIKQALGLSTKSIMHKWDQ--------TG--VRDIEGYASYIEKSAKLMKVMRTTG 222 (333)
Q Consensus 159 D~~L~~~~r~~~gl~~~--~~lK~~LGlStKSivH~W~~--------~g--~g~Ipgya~~i~~vak~ak~~k~gG 222 (333)
+..|..|....-.+++. ..|-+...-+.+.+.-++++ .. ..+++.. +++-+.-+...++.+|
T Consensus 276 P~LLeLLqSpdP~IQEAALKALGKIAddsEErLrpyLdeVL~iLv~LLeDlHeEVRrV--AIEALETLSeI~RaLG 349 (1209)
T 7NRC_A 276 PVAVSNLDEIAWRTKRGSVQLLGNMAYLDPTQLSASVSTIVPEIVGVLNDSHKEVRKA--ADESLKRFGEVIRNAA 349 (1209)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCCHHHHHhhHHhHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHhcc
No 66
>PF01153.23 ; Glypican ; Glypican
Probab=38.44 E-value=6.4e+02 Score=28.18 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred hHHHHHHHHHCCCC-----CcCCCcEEEe--cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHh
Q FD01850236_028 21 SGVKELYHQLNPEK-----KKKPGSILVV--ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSS 92 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-----~v~pGqivIl--~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~ 92 (333)
..++..|...+-.. .-.+|+-+-| ..+.+=. ..|+.....+..+....+..-+..-...+..++.-++.+.
T Consensus 17 ~~v~~~~~~~~~~~~~vp~~~~~g~~l~iC~~~~tCCt~~mE~~l~~~s~~~~~~~l~~~~~~l~~~l~~~~~~f~~~f- 95 (531)
T W5MEP4_LEPOC/1 17 SDVRQFYSGKGFHLVGVPQTEISGEHLRICPQGYTCCTSEMEESLSTLSRREFEGLVKEAGHSLQLSLTTQYKSFDGYF- 95 (531)
T ss_pred HHHHHHHHcCCCCccCCCCcccCCCcccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccch-
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 93 NIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 93 ~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
.+.|+.-+.--.+.|.+. ...+|.+-..+|.+|-..|..+.+
T Consensus 96 ----------------------------~~ll~~s~~~l~~~f~~~-----yg~~y~~~~~~f~~lf~~L~~y~~ 137 (531)
T W5MEP4_LEPOC/1 96 ----------------------------LDLLNQSERSLQDSFPAV-----YGELYTQNARLFKDLYAELRRYYR 137 (531)
T ss_pred ----------------------------HHHHhhcchhHHHhchHh-----HHhHHHHHHHHHHHHHHHHHHHHh
No 67
>5XE7_A ECF RNA polymerase sigma factor SigJ; RNA polymerase subunit, ECF41 sigma factor, DNA binding, SnoaL_2 domain, DNA BINDING PROTEIN; HET: MSE; 2.162A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
Probab=38.39 E-value=3.9e+02 Score=25.37 Aligned_cols=142 Identities=8% Similarity=-0.073 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC---CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHH
Q FD01850236_028 1 VVPELTTPKSYECELMVNPPSGVKELYHQLNPEK---KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEE 76 (333)
Q Consensus 1 Iv~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl---~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~e 76 (333)
+.....+...+..+|+.-......+++++.+.+. ....-+.....++.... ........+....+.+++..|++.+
T Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~ 123 (312)
T 5XE7_A 44 WDSPDTVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQ 123 (312)
T ss_dssp CCC--CCSCCHHHHHHHHHHHHHHHHC-------CCCSCCCCCCCCEECTTCCSTTHHHHCSGGGSHHHHHHHTTTCSSS
T ss_pred hcCCCcccCCHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHhhCCHHH
Q ss_pred HHHHHHC-HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q FD01850236_028 77 AKLLYEN-RTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLF 155 (333)
Q Consensus 77 a~fl~~~-~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf 155 (333)
+..+..+ ++-+..-- ++...+-....|.+.++++.+..++.+... .......=-...+.++
T Consensus 124 r~il~~~~~~~~~~~e-----------------ia~~lgis~~~v~~~~~r~~~~l~~~l~~~-~~~~~~~~~~~~~~~~ 185 (312)
T 5XE7_A 124 RVAFVLHDGFAVPFAE-----------------VAEVLGTSEAAARQLASRARKAVTAQPALI-SGDPDPAHNEVVGRLM 185 (312)
T ss_dssp HHHHCCCCCTCCCHHH-----------------HHHHHTSCSHHHHHHHHHHHSTTC-----------CTTHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHH-----------------HHHHHCCCHHHHHHHHHHHHHHHHcCcccc-CCCCChhHHHHHHHHH
Q ss_pred HHHHH
Q FD01850236_028 156 KQLDG 160 (333)
Q Consensus 156 ~~LD~ 160 (333)
..++.
T Consensus 186 ~a~~~ 190 (312)
T 5XE7_A 186 AAMAA 190 (312)
T ss_dssp HHGGG
T ss_pred HHHHc
No 68
>5JG7_A Fur regulated Salmonella iron transporter; structural genomics, CSGID, periplasmic binding protein, Center for Structural Genomics of Infectious Diseases, METAL TRANSPORT; HET: MSE, GOL; 1.7A {Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)}
Probab=38.01 E-value=1.6e+02 Score=25.82 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
..+.+..+.|.+.|.++.-.+...|.++ .+.|..+-+.|.++++..|..+
T Consensus 108 ~~~~~~~~~i~~~L~~~~P~~~~~~~~n-----~~~~~~~l~~l~~~~~~~l~~~ 157 (160)
T 5JG7_A 108 ENALIYVDNIRDALVKYDPDNAQIYKQN-----AERYKAKIRQMADPLRAELEKI 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHTCHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHccC
No 69
>2OV3_A Periplasmic binding protein component of an ABC type zinc uptake transporter; ABC Transporter, solute binding domain, zinc transport, TRANSPORT PROTEIN; 2.4A {Synechocystis sp.} SCOP: c.92.2.2
Probab=37.86 E-value=2.1e+02 Score=27.61 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKS 188 (333)
..+.+..+.|.+.|.++.-.+.+.|.++ .+.|..+-.+|..+++..+.++-.+.+ .-+...-+=+.+|+..-.
T Consensus 107 ~~~~~~~~~i~~~L~~~~p~~~~~~~~n-----~~~~~~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~y~~~~~gl~~~~ 181 (260)
T 2OV3_A 107 TLVKRQATTIAKELAELDPDNRDQYEAN-----LAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIP 181 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCCEEEEechhHHHHHHHcCCEEeE
Q ss_pred HHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHH
Q FD01850236_028 189 IMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACA 242 (333)
Q Consensus 189 ivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~ 242 (333)
+.. ++....-..+.+..+.+|..+.--|=.+...+...+..-+.
T Consensus 182 ~~~----------~~~~~s~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 225 (260)
T 2OV3_A 182 IEV----------EGQEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAA 225 (260)
T ss_dssp SCC----------SSSCCCTTHHHHHHHHHHHHTCCEEEEETTSCCHHHHHHHH
T ss_pred eee----------CCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHH
No 70
>8FEF_E Virulence factor Mce family protein; Membrane protein complex, ABC transporter, Virulence factor, Lipid transport, MEMBRANE PROTEIN; HET: UNL; 2.71A {Mycolicibacterium smegmatis MC2 155}
Probab=36.92 E-value=7.2e+02 Score=25.60 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcCCCcEEEe-cCCCCCC-HHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHH
Q FD01850236_028 35 KKKPGSILVV-ADPLSRS-PEKIAQIQTARDKID-KALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKD 111 (333)
Q Consensus 35 ~v~pGqivIl-~dP~~~~-~~ee~~L~~~A~~v~-~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~ 111 (333)
++.+|+.|-. ..+.... ......+......++ ..+..+..+-.+.+..+-+.+..++ ..+...+.
T Consensus 136 ~l~~g~~i~~~~t~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~------------~~~~~~~~ 203 (390)
T 8FEF_E 136 LLRDGDTIPLAQSSAYPTIERTLAGISGILTGGGIPNIEVIQTEVFNILNGRADQIREFL------------NQLDTFTD 203 (390)
T ss_dssp BCCTTCEECGGGEEECCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCHHHHHHHH------------HHHHHHHH
T ss_pred cCCCCCeecccccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCHHHHHHHH------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 112 AGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 112 ~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
.+....+++.+++++++++..+.-... ..+ ..+...=..++++|+..+..+.+
T Consensus 204 ~l~~~~~~l~~~l~~l~~~~~~l~~~~-~~l--~~~l~~~~~~~~~l~~~~~~l~~ 256 (390)
T 8FEF_E 204 ELNQQREEITRAIDSTNRLLNIVSQRN-DTL--DRVLTEFPPLIQHFAETRDLFAD 256 (390)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHTH-HHH--HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcHHHHHHHHHHHHHHHHHHHhcc-HHH--HHHHHhhHHHHHHHHHcHHHHHH
No 71
>5WUR_B ECF RNA polymerase sigma factor SigW; Sigma-anti-sigma complex, zinc binding motif, METAL BINDING PROTEIN; 2.6A {Bacillus subtilis subsp. subtilis str. 168}
Probab=36.62 E-value=2.9e+02 Score=23.21 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred CCCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCH
Q FD01850236_028 2 VPELTTPKSYECELMVNPPSGVKELYHQLNPEK------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTN 74 (333)
Q Consensus 2 v~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~ 74 (333)
.++-.+...+..+++..-.......+++.+... .-....-..-..+.... ........+....+...+..|++
T Consensus 60 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 139 (187)
T 5WUR_B 60 IDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPD 139 (187)
T ss_dssp GGGCCTTSCHHHHHHHHHHHHHHHHHHHTSTTTTC------------------------------CHHHHHHHHHTTSCH
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHHHccCCCCccchhhcCcCCCcccchhccCCCChhHHHHHHHHHHHHHHHHHcCCH
Q ss_pred HHHHHHHHCH---HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYENR---TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 75 ~ea~fl~~~~---~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
.++..+..++ ...+.+. ..-+...........+..+.+++.|+++
T Consensus 140 ~~~~i~~~~~~~g~~~~eia--------~~l~~s~~~v~~~~~r~~~~l~~~l~~l 187 (187)
T 5WUR_B 140 KYRTVIVLKYIDELSLIEIG--------EILNIPVGTVKTRIHRGREALRKQLRDL 187 (187)
T ss_dssp HHHHHHHHHHTSCCCHHHHH--------HHHTSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHhheeeeccCccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHhcC
No 72
>8EQS_C Apolipoprotein A-I; Membrane protein, SARS-CoV, SARS-CoV-2, VIRAL PROTEIN; HET: PEE; 3.1A {Severe acute respiratory syndrome coronavirus}
Probab=36.41 E-value=5.6e+02 Score=24.19 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
+.+......+...|.+..++-.+.+.++.+-+..-+ ...+.-.-..+..++++++..|...-+-.+..+
T Consensus 96 ~~~~~~~~~l~~~l~p~~~el~~~l~~~~~~l~~~l-----------~p~~e~l~~~l~~~~~~l~~~l~~~~~~l~~~l 164 (211)
T 8EQS_C 96 EGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL-----------APYSDELRQRLAARLEALKENGGARLAEYHAKA 164 (211)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCh-HHHHHHhC
Q FD01850236_028 136 SQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL-NLKQY-EQIKQALG 183 (333)
Q Consensus 136 ~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~-gl~~~-~~lK~~LG 183 (333)
... .+++...-...+..|...|..+....- .+.+. ..++..|+
T Consensus 165 ~~~-----~~~l~~~l~p~~~~l~~~l~~~~e~l~~~l~~~~~~~~~~L~ 209 (211)
T 8EQS_C 165 TEH-----LSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLN 209 (211)
T ss_dssp --------------------------------------------------
T ss_pred HHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
No 73
>PF19775.3 ; DUF6261 ; Family of unknown function (DUF6261)
Probab=36.34 E-value=4.3e+02 Score=23.71 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
....++|..+...+.+-..-...-+.+--..++.++ ..+......--...-.+...+++++..=++++++|.+.-
T Consensus 31 ~~~~~aA~~l~~~~~~~~~~~~~~~~~qt~~i~~ll-----~~l~~~~~~~~l~~Lgl~~~i~~L~~~n~~f~~~~~~r~ 105 (163)
T A0A180F5R1_9BA 31 ADIQKAATVLKYILDNYKGTTKASYADESGRIINLL-----QDLAEMDNAAAIETLSLTADVANLAAQNTAFTELYLARA 105 (163)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH-----HHHhccccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 136 SQNSGRI-SGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 136 ~~~~G~l-~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
... ... .....-..|+.+-..++..+..+
T Consensus 106 ~~~-~~~~~~~~~~~~R~~~~~~~~~l~~~i 135 (163)
T A0A180F5R1_9BA 106 DKK-ELQRQEGTLRDARKLTDNAFHVLTEAL 135 (163)
T ss_pred HHH-HHHhhcccHHHHHHHHHHHHHHHHHHH
No 74
>4YWT_B Glypican-1; glypican-1, diffraction quality, controlled dehydration, HC1b, membrane protein; HET: NAG; 2.38A {Homo sapiens}
Probab=35.22 E-value=1e+03 Score=26.80 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hHHHHHHHHHCCCC-----CcCCCcEEEe--cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHh
Q FD01850236_028 21 SGVKELYHQLNPEK-----KKKPGSILVV--ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSS 92 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-----~v~pGqivIl--~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~ 92 (333)
..++..|...+-.. .-.+|+=+-| ..+.+=. ..|+.....+.+.....+..-+..-...+..++.-++.+.
T Consensus 32 ~~vr~~~~~~~~~~~~vp~~~~~g~~l~iC~~~~tCCt~~mE~~l~~~s~~~~~~~l~~~~~~l~~~l~~~~~~f~~~f- 110 (526)
T 4YWT_B 32 GEVRQIYGAKGFSLSDVPQAEISGEHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFDDHF- 110 (526)
T ss_dssp HHHHHHHHHTTCCGGGSCSBCBCCTTCSSSCSSSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCHhhCCCcccCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH-
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 93 NIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 93 ~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
.+.|+.-+.--.+.|.+. ...+|.+-..+|.+|-..|..+.+
T Consensus 111 ----------------------------~~ll~~s~~~l~~~F~~t-----Yg~ly~~n~~~f~~lf~~L~~y~~ 152 (526)
T 4YWT_B 111 ----------------------------QHLLNDSERTLQATFPGA-----FGELYTQNARAFRDLYSELRLYYR 152 (526)
T ss_dssp ----------------------------HHHHHHHHHHHHHHSHHH-----HTHHHHTSHHHHHHHHHHHHHHHT
T ss_pred ----------------------------HHHHccchHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHhc
No 75
>6BTM_D Alternative Complex III subunit D; Electron transport chain, triacylated cysteine, heme c domain, iron-sulfur cluster, MEMBRANE PROTEIN; HET: E87, HEC; 3.4A {Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)}
Probab=34.27 E-value=2.8e+02 Score=24.84 Aligned_cols=102 Identities=8% Similarity=-0.247 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 206 SYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWV 285 (333)
Q Consensus 206 ~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~ 285 (333)
++.+.+.++.+.|+..|+----+..........+.=....+..+ .+.+.|++.|.++|..++.........+.
T Consensus 11 ~~~~~a~~a~~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~G~~~g~~~~~~~~~~~~~~~ 83 (174)
T 6BTM_D 11 NDDDVLMNAVKKTRAAHHHIEEVFTPFPVHGLDKAMGLAPTRLA-------ICAFLYGCVGISVATTMMSYIMIHDWPQD 83 (174)
T ss_dssp SSHHHHHHHHHHHHHTTCCCCEEECSSCCSSHHHHHTCCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCceEEEccccccchHHHcCCCCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q ss_pred hh----------ccccCCCchhHHHHHHHhccchhHHHHHHHHHH
Q FD01850236_028 286 MG----------LLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFG 320 (333)
Q Consensus 286 lG----------~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G 320 (333)
.+ + |+..+..+.+.++ ++..|++.|.-.+
T Consensus 84 ~~g~~~~~~~~~~---~~~~~~~~~~~~~---g~~~g~~~g~l~~ 122 (174)
T 6BTM_D 84 IGGKPSFSFIQNM---PSFVPIMFEMTVF---FAAHLMVITFYMR 122 (174)
T ss_dssp STTCCCSSSSTTC---GGGHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCccCCchhhcC---CChHHHHHHHHHH---HHHHHHHHHHHHH
No 76
>4GVP_A Response regulator protein vraR; Response regulator, Two-component system, Bacterial signalling, DNA binding, Transcription factor, TRANSCRIPTION; 2.03A {Staphylococcus aureus}
Probab=34.19 E-value=2.5e+02 Score=23.20 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhC-CccCchHHHHHHHHHH
Q FD01850236_028 148 FGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTG-VRDIEGYASYIEKSAK 213 (333)
Q Consensus 148 ~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g-~g~Ipgya~~i~~vak 213 (333)
..+++..+..|-..-..++.....-...+.+-+.||+|.+++..|.++.- .-.+++..+.+..+.+
T Consensus 137 ~~~~~~~~~~l~~~~~~~l~~~~~g~~~~~ia~~l~~s~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (208)
T 4GVP_A 137 MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQ 203 (208)
T ss_dssp HHHHHHGGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHhhhHHhhcCCHHHHHHHHHHHcCCCHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHHHHHHH
No 77
>3Q4H_C Pe family protein; Structural Genomics, PSI-2, Protein Structure Initiative, Integrated Center for Structure and Function Innovation, ISFI, TB Structural; HET: MSE; 2.7A {Mycobacterium smegmatis}
Probab=33.98 E-value=3.5e+02 Score=21.18 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKT 134 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~ 134 (333)
..|+..++.++.....|...-...-..--.+....- +.+..........|.+.++.+...|.++...-...
T Consensus 10 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~W~--------G~a~~a~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (98)
T 3Q4H_C 10 PQLIASEANFGAKAALMRSTIAQAEQAAMSSQAFHM--------GEASAAFQAAHARFVEVSAKVNALLDIAQLNIGDA 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC--------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>1KU9_B hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, New York SGX Research; HET: MSE; 2.8A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.91 E-value=4.6e+02 Score=22.46 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC---Cc-----CCCcEEEecCCC--CCC-HHHHHHHHHHHHHHHHHHhc
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYHQLNPEK---KK-----KPGSILVVADPL--SRS-PEKIAQIQTARDKIDKALEP 71 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl---~v-----~pGqivIl~dP~--~~~-~~ee~~L~~~A~~v~~~l~~ 71 (333)
+.+.+..++...+ +-+.+.+...+++|-... .. ++...+...++. ... ......+......+...+..
T Consensus 39 ~~~~t~~ela~~l-~i~~~tv~~~l~~L~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (152)
T 1KU9_B 39 DKPLTISDIMEEL-KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEK 117 (152)
T ss_dssp SSCBCHHHHHHHH-CCCHHHHHHHHHHHHHHTSEEEECCTTCCSCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHh-CCCHHHHHHHHHHHHHcCCeEEEEecCCcceeEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 72 LTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQEL 130 (333)
Q Consensus 72 Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~l 130 (333)
+++++...+.+..+-+..+. +.+.+.++.|+.+
T Consensus 118 ~~~~e~~~~~~~l~~~~~~~--------------------------~~~~~~~~~i~~~ 150 (152)
T 1KU9_B 118 CNEEEKEFIKQKIKGIERMK--------------------------KISEKILEALNDL 150 (152)
T ss_dssp SCTTSHHHHHHHHHHHTHHH--------------------------HHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHhh
No 79
>6LOD_D Uncharacterized protein ActD; quinol:electron acceptor oxidoreductase, PHOTOSYNTHESIS; HET: SF4, EL6, HEC; 3.2A {Roseiflexus castenholzii (strain DSM 13941 / HLO8)}
Probab=33.81 E-value=4.1e+02 Score=24.13 Aligned_cols=98 Identities=12% Similarity=-0.081 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 206 SYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWV 285 (333)
Q Consensus 206 ~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~ 285 (333)
++.+.+.++.+.|+..|+--.-+..........+.....+.... .+.+.|+++|.++|..++ ..... +.
T Consensus 28 ~~~~~a~~a~~~L~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~G~~~g~~~~---~~~~~-~~ 96 (192)
T 6LOD_D 28 DDAEALLAAAEKTRDAGYKQFEAYTPMPIHGLDEAVGYRGTRLP-------WVIFGAGLLGASGMFALQ---TWINL-VE 96 (192)
T ss_dssp SSTTTTHHHHHHHHTTTCCSEECCCSSCCTTSHHHHTCCCCSHH-------HHHHHHHHHHHHHHHHHH---HCCCC-CC
T ss_pred CCHHHHHHHHHHHHHCCCCceEEEcCCCCcchhhHhCCCCCChH-------HHHHHHHHHHHHHHHHHH---HHHHH-cc
Q ss_pred hhccccCCCc----------hhHHHHHHHhccchhHHHHHHHHHH
Q FD01850236_028 286 MGLLTSEGGG----------IGAGLCLVVGIGSGIAGGKIVERFG 320 (333)
Q Consensus 286 lG~~~~~t~G----------~g~l~C~iv~~~~~~~G~~~Gg~~G 320 (333)
..+ .+.| +..+...++ ++..|+++|.-.+
T Consensus 97 ~~~---~~~g~p~~~~~~~~~~~~~~~~~---g~~~g~l~g~l~~ 135 (192)
T 6LOD_D 97 YPL---NIGGRPLFSWPAFIPATFEGMVL---LSAFAAVFGMIAA 135 (192)
T ss_dssp CCC---CCTTCCSSCSTTSHHHHSHHHHH---HHHTTTSTTHHHH
T ss_pred cCc---ccCCCCCCccccHHHHHHHHHHH---HHHHHHHHHHHHH
No 80
>1ZYM_B ENZYME I; PHOSPHOTRANSFERASE; 2.5A {Escherichia coli} SCOP: a.60.10.1, c.8.1.2
Probab=33.20 E-value=6.7e+02 Score=24.11 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcEEEecCC---------CCCC-HHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHCHHHHHHHHhhhcccccc
Q FD01850236_028 39 GSILVVADP---------LSRS-PEKIAQIQTARDKIDKALEPL--------TNEEAKLLYENRTPIDMFSSNIYSDALG 100 (333)
Q Consensus 39 GqivIl~dP---------~~~~-~~ee~~L~~~A~~v~~~l~~L--------s~~ea~fl~~~~~~l~~~~~~~~~d~~~ 100 (333)
|..+++.++ .... ..|...+.++...+.+.|..+ ..+.++.+.-|..+|++-.
T Consensus 14 G~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~D~~--------- 84 (258)
T 1ZYM_B 14 GKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEE--------- 84 (258)
T ss_dssp EEEEECCCCCCCCCCCBCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHH---------
T ss_pred EEEEEEcccccccceecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHCCHH---------
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 101 QSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 101 ~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
..........+.-..+...+.+.-+-|.+.|... ...++.+|..-+..|-..|-..+.
T Consensus 85 ----l~~~i~~~I~~~~~~a~~A~~~~~~~~~~~~~~~-----~~~~~~~r~~d~~d~~~~ll~~l~ 142 (258)
T 1ZYM_B 85 ----LEQEIIALIKDKHMTADAAAHEVIEGQASALEEL-----DDEYLKERAADVRDIGKRLLRNIL 142 (258)
T ss_dssp ----HHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHTTS-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHh
No 81
>5J5L_A Uncharacterized protein; VIRULENCE FACTOR, ARACHIDONIC ACID, LIPID BINDING PROTEIN; HET: ACD; 1.7A {Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)}
Probab=33.09 E-value=5.1e+02 Score=22.77 Aligned_cols=103 Identities=12% Similarity=-0.028 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGG--GYYEEINKVLNEIQE 129 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~--~~l~~I~~~L~~Ie~ 129 (333)
..-...++++...+.. ..+++++|...+.+.+.-+.... ...-..+-.--..+. ..-..|...|+.++.
T Consensus 42 ~~l~~~i~~~~~~~~~-~~~~s~~d~~~i~~~~~~l~~~~--------~~~l~~li~kk~~~~~~~~~~~v~~~L~~l~~ 112 (160)
T 5J5L_A 42 QQLESDIDQATADAKA-TSALSAADSTSVTNALLGLKPDI--------VTSLDAIVAKKPQVDSAGVGSLVLSDLNALQS 112 (160)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHccHHhH--------HHHHHHHHHccHHHHhcCcHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 130 LYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 130 ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
........- -...++++-..=+.+..++|..+++
T Consensus 113 ~~~~l~~~l-~~k~p~~~~~~~~~~~~~i~~~~~~ 146 (160)
T 5J5L_A 113 KTDALSGAL-QDIATATDKDTIASGTQDIDAAFSS 146 (160)
T ss_dssp HHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHCCHhhHHHHHHHHHHHHHHHHH
No 82
>1YKH_A RNA polymerase II mediator complex protein MED7; GENE REGULATION; 3.0A {Saccharomyces cerevisiae} SCOP: a.252.1.2
Probab=33.03 E-value=5.1e+02 Score=22.71 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q FD01850236_028 77 AKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFK 156 (333)
Q Consensus 77 a~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~ 156 (333)
..++..+.++++.+. ...+ .+..++++|+..+.++..+--. |+.+ +-|+.|..
T Consensus 27 ~sll~~~l~Ll~~L~--------~~P~--------~~~~~~~~l~~l~~Nmh~liN~-lRp~----------QAr~tL~~ 79 (108)
T 1YKH_A 27 KSLLLNYLELIGVLS--------INPD--------MYERKVENIRTILVNIHHLLNE-YRPH----------QSRESLIM 79 (108)
T ss_dssp HHHHHHHHHHTSSSC--------CCGG--------GHHHHHHHHHHHHHHHHHHHHH-THHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------hChH--------HHHHHHHHHHHHHHHHHHHHHh-cCHH----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHHhC
Q FD01850236_028 157 QLDGILNKFSKEQLNLKQY-EQIKQALG 183 (333)
Q Consensus 157 ~LD~~L~~~~r~~~gl~~~-~~lK~~LG 183 (333)
.|..++...-...-.+... ...+..|.
T Consensus 80 ~l~~Qi~~rr~~~~~lr~~~~~~~~~l~ 107 (108)
T 1YKH_A 80 LLEEQLEYKRGEIREIEQVCKQVHDKLT 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 83
>3R9V_B Invasin ipaD; type III secretion system, tip protein, deoxycholate, CELL INVASION; HET: DXC, GOL; 1.9A {Shigella flexneri} SCOP: a.250.1.1
Probab=33.03 E-value=2.5e+02 Score=29.13 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 54 KIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKK 133 (333)
Q Consensus 54 ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~ 133 (333)
...++....+.......+|++++++.+..-...+..-. .... .-...++.|.+.+..|++-|.+
T Consensus 52 ~~~~~~~~l~~l~~~~~~l~~~~~~~l~~~~~~~~~~~--------~~~~--------S~~e~~~~i~~~I~~ik~~YL~ 115 (286)
T 3R9V_B 52 DVNKSAQLLDILSRNEYPINKDARELLHSAPKEAELDG--------DQMI--------SHRELWAKIANSINDINEQYLK 115 (286)
T ss_dssp -------------------------------------C--------CCEE--------EHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCchhhcCC--------CCCC--------ChHHHHHHHHHHHHHHcHHHHH
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 134 TYSQNSGRISGEEFFGQRERLFKQLDGILN 163 (333)
Q Consensus 134 ~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~ 163 (333)
.|..- --...+||..=..++.+|..-+.
T Consensus 116 ~Ye~~--v~kYt~fy~~fn~i~s~l~~~I~ 143 (286)
T 3R9V_B 116 VYEHA--VSSYTQMYQDFSAVLSSLAGWIS 143 (286)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhhhcc
No 84
>PF20232.2 ; T6SS_FHA_C ; C-terminal domain of Type VI secretion system FHA protein
Probab=33.02 E-value=5.7e+02 Score=23.54 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CCCCHHHHHHHhhC-C------CChHHHHHHHHHCCCCCcCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHH
Q FD01850236_028 4 ELTTPKSYECELMV-N------PPSGVKELYHQLNPEKKKKPGSILVVADPLSRSPEKIAQIQTARDKIDKALEPLTNEE 76 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~-~------~~~~~~~~F~~LN~hl~v~pGqivIl~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls~~e 76 (333)
...+.++....||. . +...+.+.|+.|+.| +.+.+......++..|+.|+|+.
T Consensus 63 ~~~~~~~~l~~Ll~~~~~~~l~~~~al~~~~~dl~~H--------------------q~al~~a~~~a~~~~l~~l~P~~ 122 (179)
T A0A0Q6WLY1_9BU 63 FAPDLDTALAHLLRPAQRGFTPPLAAVTDAFNDLRAH--------------------EVAVLVGMRAVLIEVLSRFDPAS 122 (179)
T ss_pred cCCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q FD01850236_028 77 AKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQ 137 (333)
Q Consensus 77 a~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~ 137 (333)
.+.-.+....+..++ ..+--...|..|.+.-++..++.+..+.+.|..
T Consensus 123 ie~~~~~~~~~~~~~-------------~~~~~~~~W~~Y~~~~~~l~~~~~~~~~~~f~~ 170 (179)
T A0A0Q6WLY1_9BU 123 LVNGLAPLSPWESLL-------------PGGREAKLWAQYGERYAEIARDVEGDFNTLFGR 170 (179)
T ss_pred HHHhcccCCchhhcC-------------CCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 85
>2PFT_A Exocytosis Protein; helix-turn-helix, ENDOCYTOSIS-EXOCYTOSIS COMPLEX; 2.25A {Mus musculus}
Probab=32.97 E-value=3.1e+02 Score=29.92 Aligned_cols=123 Identities=13% Similarity=0.185 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH-----------
Q FD01850236_028 79 LLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEF----------- 147 (333)
Q Consensus 79 fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F----------- 147 (333)
|++.|+.-|...+ ..+ .........+...++..++.+++--..|++.+.+-...|.....
T Consensus 412 FllNN~~yi~~~l--------~~s-~l~~~l~~~~~~~~~~~~~~i~~~~~~Y~~~W~~~l~~L~~~~~~~~~~~~~l~~ 482 (571)
T 2PFT_A 412 FLHNNYNYILKSL--------EKS-ELIQLVAVTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKLRD 482 (571)
T ss_dssp HHHHHHHHHHTTT--------TTS-THHHHHHTTCTTHHHHHHHHHHHHHHHHHGGGHHHHTTTSGGGSCSSCCCSCCCH
T ss_pred HhHHHHHHHHHhc--------ccc-chHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHH------HHHH
Q FD01850236_028 148 --FGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKL------MKVM 218 (333)
Q Consensus 148 --~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~------ak~~ 218 (333)
-..-+..|++....+..+.+..-... +++.||+.|.-+.+..|- |.|.+-+++-... .||+
T Consensus 483 ~~r~~iK~~f~~Fn~~fee~~~~q~~~~v~d~~LR~~Lr~~i~~~vi----------p~Y~~f~~~~~~~~f~k~~~kyi 552 (571)
T 2PFT_A 483 KERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVK----------ETYGAFLHRYGSVPFTKNPEKYI 552 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHSSCCCSCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCCCCCCCHHhcc
Q ss_pred hh
Q FD01850236_028 219 RT 220 (333)
Q Consensus 219 k~ 220 (333)
|+
T Consensus 553 ky 554 (571)
T 2PFT_A 553 KY 554 (571)
T ss_dssp CC
T ss_pred CC
No 86
>6W1S_D Mediator of RNA polymerase II transcription subunit 7; mouse mediator, complex, GENE REGULATION; 4.02A {Mus musculus}
Probab=32.79 E-value=3.9e+02 Score=24.54 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q FD01850236_028 77 AKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFK 156 (333)
Q Consensus 77 a~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~ 156 (333)
..++..+.++++.+. ...+... +..++++|+.++.++..+- +.|+.+ +.|+.|..
T Consensus 73 ~~ll~~~l~Ll~~l~--------~~p~~~~------~~~~~~~i~~l~~Nm~~ll-N~~Rp~----------QAr~~L~~ 127 (157)
T 6W1S_D 73 MSILINFLDLLDILI--------RSPGSIK------REEKLEDLKLLFVHVHHLI-NEYRPH----------QARETLRV 127 (157)
T ss_dssp HHHHHHHHHHHHHHH--------HSCSTTT------HHHHHHHHHHHHHHHHHHH-HHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------hCCCccc------HHHHHHHHHHHHHHHHHHH-HhcCHH----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHHhC
Q FD01850236_028 157 QLDGILNKFSKEQLNLKQY-EQIKQALG 183 (333)
Q Consensus 157 ~LD~~L~~~~r~~~gl~~~-~~lK~~LG 183 (333)
.|..++.+--...-.+... .+.++.|+
T Consensus 128 ~l~~Qi~~r~~~~~~i~~~~~~~~~~l~ 155 (157)
T 6W1S_D 128 MMEVQKRQRLETAERFQKHLERVIEMIQ 155 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>PF12039.12 ; DUF3525 ; Protein of unknown function (DUF3525)
Probab=32.63 E-value=8.5e+02 Score=26.56 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred CCCCCC-HHHHHHHHHHHHHH-------HHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHH
Q FD01850236_028 46 DPLSRS-PEKIAQIQTARDKI-------DKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYY 117 (333)
Q Consensus 46 dP~~~~-~~ee~~L~~~A~~v-------~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l 117 (333)
+....+ ..|++..+..+.+. .....+++|-......+.-|.|++.+ +.-+...--..+.+-..|
T Consensus 220 ~~~~~e~~~E~a~~~~~~~e~~~ipe~~~~~~~~~pp~v~~twA~ivd~lh~aL--------s~i~~~~~r~~~~fi~WL 291 (364)
T Q80L37_9VIRU/1 220 PEEVKLDVVELAYTQFVRDEKERIPEPKGTRILVMPNWKPDNWARLIDETHRVL--------SQFTHYTPRVLNELVVWL 291 (364)
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCCCCChHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCC
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGL 184 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGl 184 (333)
+.|.+-+.+.-.=--+.+..- ...-+..-+++|+.|-..+.+|+-...|+....++|.+-|+
T Consensus 292 k~i~~nv~~fi~PIl~~L~~~-----~~~a~~~S~~~fr~l~~~~~~flD~~~G~e~skRvKtvWgL 353 (364)
T Q80L37_9VIRU/1 292 KGLGENLYRVAEPILMLLVRA-----MRAAKSVSDRATRSIYHCLCHWLDVMYGGSAPTRVKTVWGL 353 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHh
No 88
>PF11887.12 ; Mce4_CUP1 ; Cholesterol uptake porter CUP1 of Mce4, putative
Probab=31.96 E-value=8.2e+02 Score=24.75 Aligned_cols=164 Identities=9% Similarity=-0.013 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHH
Q FD01850236_028 35 KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDK-----ALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGY 108 (333)
Q Consensus 35 ~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~-----~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~ 108 (333)
++.+|+.| +... +.+...+.+....+-+ .|..+-.+-++.+..+-+-|..++ ..+..
T Consensus 4 ~L~~G~~I-----~~t~~~~el~~vl~~l~~ll~~v~p~~L~~~L~ala~aL~g~g~~L~~~l------------~~l~~ 66 (268)
T Q79FZ9_MYCTU/1 4 RITPKDVI-----DVRSVTTEINTLFQTLTSIAEKVDPVKLNLTLSAAAEALTGLGDKFGESI------------VNANT 66 (268)
T ss_pred CCCCCCeE-----ecccCchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHccCHHHHHHHH------------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCh-HHHHHHhCC
Q FD01850236_028 109 IKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF---SKEQLNLKQY-EQIKQALGL 184 (333)
Q Consensus 109 ~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~---~r~~~gl~~~-~~lK~~LGl 184 (333)
....+..+..+|.+.|+++...-...=... ..| ......=+.+.+.|......+ +.....+-+. ..+=...+=
T Consensus 67 ~l~~l~~~~~~l~~~l~~l~~v~~~~~~~~-~dL--~~~l~nl~~~~~tl~~~~~~L~~~l~~l~~~~~~l~~~l~~~~~ 143 (268)
T Q79FZ9_MYCTU/1 67 VLDDLNSRMPQSRHDIQQLAALGDVYADAA-PDL--FDFLDSSVTTARTINAQQAELDSALLAAAGFGNTTADVFDRGGP 143 (268)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHhH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcch
Q ss_pred CHHHHHhccHhhC---CccCchHHHHHHHHHHHHHHH
Q FD01850236_028 185 STKSIMHKWDQTG---VRDIEGYASYIEKSAKLMKVM 218 (333)
Q Consensus 185 StKSivH~W~~~g---~g~Ipgya~~i~~vak~ak~~ 218 (333)
.-..++++++... ...-|.+..-++++....+.+
T Consensus 144 ~l~~~l~~l~~~~~~L~~~s~~l~~~l~~l~~~~~~~ 180 (268)
T Q79FZ9_MYCTU/1 144 YLQRGVADLVPTATLLDTYSPELFCTIRNFYDADPLA 180 (268)
T ss_pred hHHHHHHHhhHHHHHHHHhCHHHHHHHHhHHhhHHHH
No 89
>2N5E_B Apolipoprotein A-I; nanodisc, HDL, lipoproteins, cardiovascular disease, LIPID BINDING PROTEIN; NMR {Homo sapiens}
Probab=31.53 E-value=5.9e+02 Score=22.99 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
+.|....+.+...|.+..++-...+.++.+-+..-+ .....-...-+..++++++..|.-.-...+..+
T Consensus 74 ~~l~~~~~~l~~~l~p~~~~l~~~l~~~~~~l~~~l-----------~~~~~~~~~~~~~~~~~l~~~l~p~~~~~~~~l 142 (167)
T 2N5E_B 74 DRARAHVDALRTHLAPYSDELRQRLAARLEALKENG-----------GARLAEYHAKATEHLSTLSEKAKPALEDLRQGL 142 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 136 SQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 136 ~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
... -+.|..+=..++..+-..|+.
T Consensus 143 ~~~-----~~~l~~~l~~~~~~~~~~~~~ 166 (167)
T 2N5E_B 143 LPV-----LESFKVSFLSALEEYTKKLNT 166 (167)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHhc
No 90
>PF15967.9 ; Nucleoporin_FG2 ; Nucleoporin FG repeated region
Probab=31.34 E-value=5.1e+02 Score=29.63 Aligned_cols=79 Identities=8% Similarity=0.079 Sum_probs=0.0 Template_Neff=2.700
Q ss_pred C-HHHHHHHHHHHHHHHHHHhcCCHH-----HH--HHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 51 S-PEKIAQIQTARDKIDKALEPLTNE-----EA--KLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINK 122 (333)
Q Consensus 51 ~-~~ee~~L~~~A~~v~~~l~~Ls~~-----ea--~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~ 122 (333)
+ .+++++.++.-+++.+.|..+..+ ++ +.|..+++.+-.+. ..+..+..
T Consensus 348 QmEeRLqwYKqTIEQIERhLsS~asqsq~TPQAIs~TLQAQHaTFLALA-----------------------SKtAALDa 404 (596)
T W5M8W5_LEPOC/2 348 QFEVQLQQYRQQIEELENHLTTQASSSHITPQDLSLAMQKLYHTFVAVA-----------------------AQLQSVHE 404 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q FD01850236_028 123 VLNEIQELYKKTYSQNSGRISGEEFFGQRER 153 (333)
Q Consensus 123 ~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~ 153 (333)
.|++|..+|.+.+|.. -.--++-|-..|++
T Consensus 405 eLqKLKa~YtqlWRak-TGS~RDPFee~r~~ 434 (596)
T W5M8W5_LEPOC/2 405 NVKILKHQYLGYRKAF-LEDSTDVFESKRAA 434 (596)
T ss_pred HHHHHHHHHHHHHHHH-hcccCChhHHHHHh
No 91
>5XLN_B Threonine--tRNA ligase, cytoplasmic; TRS, 4EHP, Complex, RNA BINDING PROTEIN-LIGASE complex; 1.9A {Homo sapiens}
Probab=31.24 E-value=64 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHHHH
Q FD01850236_028 145 EEFFGQRERLFKQL 158 (333)
Q Consensus 145 ~~F~a~R~~Lf~~L 158 (333)
++|..+|-+||.+|
T Consensus 22 P~fi~eRl~lfe~l 35 (45)
T 5XLN_B 22 PEYIYTRLEMYNIL 35 (45)
T ss_dssp CSCCCCHHHHHHHH
T ss_pred cchHHHHHHHHHHH
No 92
>7FIK_Y Nucleoporin Nup88A; CR, NPC, nucleoporin, Nup358, Nup93, Y complex, STRUCTURAL PROTEIN; 3.7A {Xenopus laevis}
Probab=31.11 E-value=1.3e+03 Score=26.71 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 47 PLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLN 125 (333)
Q Consensus 47 P~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~ 125 (333)
+.+.. .+..+.|.++.+..++.+-+--..-.+.|.++.+.+.... ..-.+.++++.+.++
T Consensus 540 ~~~~~~~e~l~~l~~~~~~lr~~~i~~~~~~~~~l~~R~~~q~~e~-------------------~~Q~~~l~~L~~~~~ 600 (728)
T 7FIK_Y 540 DSSPPPEECLQLLSRATQVFREEYLLKQDLANEEIQRRVKLLIAQK-------------------EKQLEDLRYCREERK 600 (728)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHh
Q FD01850236_028 126 EIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQAL 182 (333)
Q Consensus 126 ~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~L 182 (333)
++.+-+.+.-.+. ++..++-+.|.+|++..|.++.++.-.|. ...++++.|
T Consensus 601 ~l~~~~~~l~~r~------e~~~~kq~~L~~Rl~~vl~~l~~~~~~LS~aE~~~~~eL 652 (728)
T 7FIK_Y 601 SLTETAERLAEKF------EEAKEKQEDLINRLKRILRSFHTQLPVLSESERDMKKEL 652 (728)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
No 93
>PF11855.12 ; DUF3375 ; Protein of unknown function (DUF3375)
Probab=30.78 E-value=3.7e+02 Score=29.38 Aligned_cols=148 Identities=12% Similarity=0.231 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 49 SRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 49 ~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
++. ....+.|++..+++++.+..|...+.. .....++.+.+. .+-..+...-.-|.+|++..++|
T Consensus 131 ~~D~~~Ri~~L~~q~~~i~~eI~~l~~G~~~-~~~~~~i~er~~-------------~i~~la~~L~~DFr~Ve~~f~~l 196 (468)
T Q8NLY0_CORGL/1 131 DPSTAKRLAELERERDRIERQIEAVHAGEFE-VLTTVQIGDRVA-------------DILDLAASIPADFARVRHELSDL 196 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cCChHHHHHHHH-------------HHHHHHhhCChhHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCC-------------------CHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHhCCCHH
Q FD01850236_028 128 QELYKKTYSQNSGRI-------------------SGEEFFGQRERLFKQ-LDGILNKFSKEQLNLKQYEQIKQALGLSTK 187 (333)
Q Consensus 128 e~ly~~~~~~~~G~l-------------------~~~~F~a~R~~Lf~~-LD~~L~~~~r~~~gl~~~~~lK~~LGlStK 187 (333)
.+--++.+... ..- .+..|++=.+-|... ....|..++...+..|....|.....-.-+
T Consensus 197 ~r~l~~~~~~~-~~~kG~iL~~~l~~~d~l~~s~qGrSF~aF~~~L~~~~~~~~l~~~i~~i~~~~~~~~l~~~~~~~L~ 275 (468)
T Q8NLY0_CORGL/1 197 NRKLRRQLLDP-EDSRGDVLEEIFRGVDLIGDSDAGRSFNSFFDVLLDRERSSLIDRWIREVLGRDEAIDLDSKLRTGLY 275 (468)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHhcchhhccCccchhHHHHHHHHhCHHHHHHHHHHHHHHHcCHhHhcCCHHHHHHHH
Q ss_pred HHHhccHhhC---CccCchHHHHHHHH
Q FD01850236_028 188 SIMHKWDQTG---VRDIEGYASYIEKS 211 (333)
Q Consensus 188 SivH~W~~~g---~g~Ipgya~~i~~v 211 (333)
.++++|.+.+ ......+++.+.+.
T Consensus 276 ~l~~~L~~~~~~V~~~~~~ls~~Lrr~ 302 (468)
T Q8NLY0_CORGL/1 276 RIFRDMEDASFEVNGEMTGLARSLRHY 302 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>7SAU_E Gliding motility protein GldL; type IX secretion system, MOTOR PROTEIN;{Schleiferia thermophila str. Yellowstone}
Probab=30.58 E-value=8.1e+02 Score=24.46 Aligned_cols=106 Identities=5% Similarity=0.065 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh-----hccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSN-----IYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~-----~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
....+.+.+.+..-.+.++.|+..- +.+.+.-+-|..+... .+.+.....+..++..++..+.+++.+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~~l~~~~~~~~~t~~y~~~~~~a~~~l~~lN~~Ye~ql~~~~~~~~~ 176 (223)
T 7SAU_E 98 TQELDNMLKEASIDEELIKSLGDGL-RKFGDAALKLNETIDAAEGTQKYTEQITLAAKHMESLNALYAVQLEGTASQMEL 176 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q FD01850236_028 127 IQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGI 161 (333)
Q Consensus 127 Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~ 161 (333)
+++ ..+.+... .-..+.|-+|=++|=+.|...
T Consensus 177 ~~~-~~~~~~~s--~~~~~~~~~e~~~L~~nl~~L 208 (223)
T 7SAU_E 177 QNA-LIEKLGSS--IENTEKLSTELSELVTNMSAL 208 (223)
T ss_dssp -----------------------------------
T ss_pred HHH-HHHHHHhH--HHHHHHHHHHHHHHHHHHHHH
No 95
>5Y2G_A Maltose-binding periplasmic protein,Protein B; Camp factor, pore forming toxin, TOXIN; HET: SO4, GLC; 3.0A {Escherichia coli}
Probab=30.49 E-value=9.2e+02 Score=26.60 Aligned_cols=119 Identities=6% Similarity=0.111 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred cCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q FD01850236_028 71 PLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQ 150 (333)
Q Consensus 71 ~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~ 150 (333)
+..+...+....-.+.++.++ ..-......+-.....+.+.+++.++.++++++.+.+..... .......|=..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~-----~g~~t~eeal~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 405 (595)
T 5Y2G_A 332 PNIPQMSAFWYAVRTAVINAA-----SGRQTVDAALAAAQTNAVDSNNQAQQMAQKLDQDSIQLRNIK-DNVQGTDYEKP 405 (595)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH-----HSSSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH-HHSCSSTTHHH
T ss_pred CCCcccHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HhcCCCChHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHH
Q FD01850236_028 151 RERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVM 218 (333)
Q Consensus 151 R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~ 218 (333)
+++++..||..+ +.+++.+.++.. .+.||-=-+-+.++.++.+..
T Consensus 406 ~~~~~~~l~~~~-----------------~~~~~~~~~~~~------~~~~~~r~~~~~~~~~~~~~~ 450 (595)
T 5Y2G_A 406 VNEAITSVEKLK-----------------TSLRANSETVYD------LNSIGSRVEALTDVIEAITFS 450 (595)
T ss_dssp HHHHHHHHHHHH-----------------HHTTTCCCCSSC------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------HhcccCCCceec------cccHHHHHHHHHHHHHHHHHH
No 96
>7R5K_W0 Nuclear pore complex protein Nup88; multiprotein complex, nucleocytoplasmic transport, TRANSPORT PROTEIN; 12.0A {Homo sapiens}
Probab=30.19 E-value=1.3e+03 Score=26.69 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKV 123 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~ 123 (333)
..+.... .+-.+.|.++.+..++..-+-=..-.+.+.++.+.+.... ..-.+.++++.+.
T Consensus 551 ~~~~~~~~~e~l~~l~~~~~~lr~~yi~~~~~~~~~l~~R~~~q~~e~-------------------~~Q~~~l~~l~~~ 611 (741)
T 7R5K_W0 551 EKDIAPPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQK-------------------KKQLEDLSYCREE 611 (741)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHh
Q FD01850236_028 124 LNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQAL 182 (333)
Q Consensus 124 L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~L 182 (333)
++++.+-+.+.-.+. ++.-.+-+.|.+|+|..|.++.++.-.|. ...++++.|
T Consensus 612 ~~~l~~~~~~l~~r~------e~~~~kq~~L~~Rl~~vl~~l~~~~p~LS~aE~~~~~eL 665 (741)
T 7R5K_W0 612 RKSLREMAERLADKY------EEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKEL 665 (741)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
No 97
>1EQ1_A APOLIPOPHORIN-III; Five helix-bundle, "helix-short helix-helix" recognition motif, LIPID BINDING PROTEIN; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=29.70 E-value=7e+02 Score=23.30 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALE-----PLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYE 118 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~-----~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~ 118 (333)
+++.... .......+.....+...+. +-+++-...+.++-+.+..-+ ...+..+..-+..|-.
T Consensus 2 apa~~~~l~el~~~a~~~~~~~~~~~~~~~~~p~~eev~~~lk~~s~~~a~~l-----------~~~~~~l~~~~~~~~~ 70 (166)
T 1EQ1_A 2 APAGGNAFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQL-----------SAFSSSLQGAISDANG 70 (166)
T ss_dssp CSSSCCCSTHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHHHHHHHHHHHH-----------HHHHHHHHHHHTTCSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHhcH
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHhCCCHHHHH
Q FD01850236_028 119 EINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQY-----EQIKQALGLSTKSIM 190 (333)
Q Consensus 119 ~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~-----~~lK~~LGlStKSiv 190 (333)
.+++.|+++..-..+....- +-..|+-.+.=+.|-.+++..|..++...=.+... ..+++.|.=.+|+++
T Consensus 71 ~~~~~~k~~~~kl~~~~~~l--k~~~Pe~~~~a~el~~~~~~~~~~i~~e~~kl~k~~~~~~~~~~e~l~~~~k~~~ 145 (166)
T 1EQ1_A 71 KAKEALEQARQNVEKTAEEL--RKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAY 145 (166)
T ss_dssp THHHHHHHHHHHHHHHHHGG--GGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 98
>PF20893.1 ; DUF6845 ; Domain of unknown function (DUF6845)
Probab=29.61 E-value=4.1e+02 Score=24.59 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q FD01850236_028 72 LTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQR 151 (333)
Q Consensus 72 Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R 151 (333)
++++.+++|..++..+.... ..+....+++++=+++=.-.=-+.+... -.-...+|+..|
T Consensus 69 f~~e~~~~~k~~v~~~~~s~-------------------~~~~~~y~~l~~Y~KDDkgaKg~~l~~~-i~~~~~~~~~a~ 128 (149)
T A0A174TG11_9BA 69 FNDEVRQNLIQNYRGLFTSR-------------------AQFYANFDKFLSYRKDNKKAETTKLLKE-NYQLSIAMSEYK 128 (149)
T ss_pred CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHhH
Q ss_pred HHHHHHHH
Q FD01850236_028 152 ERLFKQLD 159 (333)
Q Consensus 152 ~~Lf~~LD 159 (333)
..+|.+|+
T Consensus 129 ~~i~~~l~ 136 (149)
T A0A174TG11_9BA 129 QVIFDILS 136 (149)
T ss_pred HHHHHHhh
No 99
>6VME_E Vacuolar protein sorting-associated protein 28 homolog; Endosomal transport, HIV release, macroautophagy, PROTEIN TRANSPORT; 2.19A {Homo sapiens} SCOP: a.2.17.0
Probab=29.46 E-value=5.9e+02 Score=22.84 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhc
Q FD01850236_028 117 YEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHK 192 (333)
Q Consensus 117 l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~ 192 (333)
+-.|-.+|+.+|++|.+ +.+..+++-.+-.+|++|....+..+... .+++....-+..+++-..-++.
T Consensus 42 lYsIi~tle~LEka~~r------d~I~~~eY~~~C~~Li~q~k~~~~~l~~~--~~~~~~~F~~~y~l~cp~A~~R 109 (122)
T 6VME_E 42 LFAVVKTMQALEKAYIK------DCVSPSEYTAACSRLLVQYKAAFRQVQGS--EISSIDEFCRKFRLDCPLAMER 109 (122)
T ss_dssp HHHHHHHHHHHHHHHHT------TCSCHHHHHHHHHHHHHHHHHHHHHHCSS--SCCSHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc------cCCCHHHhhHHHHHHHHHHHHHHHHccCC--CCCCHHHHHHHhCCCCHHHHHH
No 100
>PF03081.19 ; Exo70_C ; Exo70 exocyst complex subunit C-terminal
Probab=29.30 E-value=9.3e+02 Score=24.56 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHCHHHHHHHHhhhccccccch-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCC----------HHH
Q FD01850236_028 79 LLYENRTPIDMFSSNIYSDALGQS-GDIFGYIKDAGGGYYEEINKVLNEI-QELYKKTYSQNSGRIS----------GEE 146 (333)
Q Consensus 79 fl~~~~~~l~~~~~~~~~d~~~~~-s~~~G~~~~~~~~~l~~I~~~L~~I-e~ly~~~~~~~~G~l~----------~~~ 146 (333)
|++.|+..|...+ ... ...--.......++-+.+++.++.- ...+...+..- -.-. ..+
T Consensus 224 FllNN~~~i~~~l--------~~~~~l~~~l~~~~~~~~~~~~~~~~~~Y~~~~W~~~~~~l-~~~~~~~~~~~~~~~~~ 294 (375)
T W1NW13_AMBTC/2 224 FLMNNARYVVQKV--------NGSPELRQLLGDDWLRKHTGRVRVRATSYLRTTWAPVLLCL-RDEGIHVSGGLLSGVSK 294 (375)
T ss_pred hhhhHHHHHHHHh--------cCCHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHh-hhcCcccCCCccCccch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHH-------HHH
Q FD01850236_028 147 FFGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLM-------KVM 218 (333)
Q Consensus 147 F~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~a-------k~~ 218 (333)
-- .+..|+.....+..+.+..-... +++.||+.|.-.-+..|- |.|.+.+++-.... ||+
T Consensus 295 r~--iK~~f~~Fn~~fe~~~~~q~~~~vpD~~LR~~L~~~i~~~v~----------p~Y~~f~~~~~~~~~~~~~~~kyi 362 (375)
T W1NW13_AMBTC/2 295 AA--LKERFKSFNSAFDEVHRTQATWIVPDVQLREELRISIQELLL----------PAYRSFLGRFRNHLESGRHSELYI 362 (375)
T ss_pred HH--HHHHHHHHHHHHHHHHHhcCceeecCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHccCCCccccc
Q ss_pred hh
Q FD01850236_028 219 RT 220 (333)
Q Consensus 219 k~ 220 (333)
|+
T Consensus 363 ky 364 (375)
T W1NW13_AMBTC/2 363 KY 364 (375)
T ss_pred cC
No 101
>7N61_0C Flagellar WD repeat-containing protein Pf20; central pair apparatus, C2 projection, kinesin motor protein, STRUCTURAL PROTEIN; HET: ADP, GDP, GTP; 3.5A {Chlamydomonas reinhardtii}
Probab=29.19 E-value=1e+03 Score=26.05 Aligned_cols=84 Identities=11% Similarity=0.223 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHH-------HHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEA-------KLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVL 124 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea-------~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L 124 (333)
..+.+.+++++.++...+..+-.+-. ....+.-.+++.+- ...+|++..+..|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~k~~l~~~ik--------------------~l~~~~~~~~~~~ 191 (606)
T 7N61_0C 132 RRELAEAKSIAGRASATWDKFRKERDFHRMHHKRVAQEKNKLLTDLR--------------------RLKEHYAKYEPTI 191 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q FD01850236_028 125 NEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGI 161 (333)
Q Consensus 125 ~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~ 161 (333)
++|++-|+..++.. ..--.+|+++..++...
T Consensus 192 ~~l~~k~~~~~~~k------~~~~l~~~~~~~~~~~l 222 (606)
T 7N61_0C 192 LELKKKYETLMKEK------MMMSLERDKLAARVDAL 222 (606)
T ss_pred HHHHHHHHHHHHHH------hcHHHHHHHHHHHHHHH
No 102
>8FEF_A Virulence factor Mce family protein; Membrane protein complex, ABC transporter, Virulence factor, Lipid transport, MEMBRANE PROTEIN; HET: UNL; 2.71A {Mycolicibacterium smegmatis MC2 155}
Probab=29.03 E-value=9.6e+02 Score=25.29 Aligned_cols=99 Identities=11% Similarity=-0.078 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..-.+.+.+++.++.+.+..++ +..+.+.++.+-|+.++ .........+.....+.-+.+.+.++.++.+-
T Consensus 219 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~l~~~~~~l~~~l--------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 289 (409)
T 8FEF_A 219 ANLGEVYADASPDLFDGLDNAV-TTARTLNEQRGNLDQAL--------VAAVGFGNTGGDIFERGGPYLVRGAQDLLPTS 289 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhh-hhchhHHHHhccHHHHH--------HHhhchHHHHHHHHHhcHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGIL 162 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L 162 (333)
...-... ..+ +.++..=+.+..+++..+
T Consensus 290 ~~l~~~~-~~l--~~~l~~l~~~~~~~~~~~ 317 (409)
T 8FEF_A 290 ALLDEYS-PAL--FCTIRNYHDAAPKLAGAL 317 (409)
T ss_dssp HHHHHTC-TTT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-chh--hHHHHHHHHHHHHHHHHh
No 103
>6W2D_z Large tegument protein deneddylase; gamma-herpesvirus, EBV, CATC, Structural plasticity, VIRAL PROTEIN; 4.0A {Epstein-Barr virus (strain B95-8)}
Probab=28.62 E-value=3.1e+02 Score=37.60 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred cCCCC--CC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLS--RS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEIN 121 (333)
Q Consensus 45 ~dP~~--~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~ 121 (333)
++|.. +. ...++.+++....+.+..+.|+.+-.+.+.++.+.+.+-- ... ---+...|.+|.
T Consensus 978 P~P~~~~plE~~~eeK~k~l~e~v~~vv~dLt~~v~e~l~DmLd~l~~~~--------~~~-------iPDf~~lL~~i~ 1042 (3149)
T 6W2D_z 978 PPAASVPPFVHNVAVRSKNAALHVRRCTADIRDKVASAASDYLSYLEDPS--------LPT-------VMDFDDLLTHLR 1042 (3149)
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------CCC-------CCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcCCCChHHHHHHhCCCHHH
Q FD01850236_028 122 KVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK-------------EQLNLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r-------------~~~gl~~~~~lK~~LGlStKS 188 (333)
++|+.++. .+.+... ..+--..+++|+ .|-..|..++. ...-++.-.+||+.+.--.+.
T Consensus 1043 sTLk~i~~--le~L~l~-----~~~L~~~~qQLl-YLG~ElA~i~~~~Wp~~~~e~~~~pV~pl~e~~~lr~kl~el~k~ 1114 (3149)
T 6W2D_z 1043 HTCQIIAS--LPLLNIR-----YTSIEWDYRELL-YLGTALSDMSGIPWPLERVEEDDPSIAPLPEFETVAKKQKELETT 1114 (3149)
T ss_pred HHHHHhhc--HHHhccc-----cchhhHHHHHHH-HHHHHHHHHhCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHHHH
Q ss_pred HHhccHhhCCccCchHHHHHHHHHHHHH
Q FD01850236_028 189 IMHKWDQTGVRDIEGYASYIEKSAKLMK 216 (333)
Q Consensus 189 ivH~W~~~g~g~Ipgya~~i~~vak~ak 216 (333)
+-- ...+..+-+.|+.+=+.+.
T Consensus 1115 ~en------~qal~~IL~dIE~mL~~i~ 1136 (3149)
T 6W2D_z 1115 REN------EKRLRTILDDIEAMLGLAG 1136 (3149)
T ss_pred HHH------HHHHHHHHHHHHHHHHHhh
No 104
>5UE8_A Protein unc-13 homolog A; ALPHA HELICAL, NEUROTRANSMITTER RELEASE, SNARE MOTIF, EXOCYTOSIS, C1 DOMAIN, C2 DOMAIN; 3.35A {Rattus norvegicus}
Probab=28.56 E-value=1.3e+03 Score=27.18 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q FD01850236_028 61 ARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLN----EIQELYKKTYS 136 (333)
Q Consensus 61 ~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~----~Ie~ly~~~~~ 136 (333)
....+++++. .--++|.+|...|..-+ ......-+....|..-++.+++.|- .+.+++...-.
T Consensus 825 ~~~~~~~~~~----pLl~yLd~~l~~l~~~L---------~~~~f~~~l~~lw~~~l~~l~~~l~~~~~~~~~~~~~~~~ 891 (961)
T 5UE8_A 825 VAQDADNVLQ----PIMDLLDSNLTLFAKIC---------EKTVLKRVLKELWKLVMNTMERTIVLPPEFLSKLKDHMVR 891 (961)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHHTTSC---------CHHHHHHHHHHHHHHHHHHTTTCC----------------
T ss_pred HHHHHHHhHH----HHHHHhHhhHHHHHHHh---------HHHHHHHHHHHHHHHHHHHhHHHccCCHHHHHHHHhcHhh
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHhc-CCCChHHHHHHhCC---CHHHHHhccHhhC
Q FD01850236_028 137 QNSGRISGEEFFGQRERLFKQLDGIL----NKFSKEQL-NLKQYEQIKQALGL---STKSIMHKWDQTG 197 (333)
Q Consensus 137 ~~~G~l~~~~F~a~R~~Lf~~LD~~L----~~~~r~~~-gl~~~~~lK~~LGl---StKSivH~W~~~g 197 (333)
.. ++..++.+|..-...++.|..-+ ..+-...+ .-+.+..|++.|.+ +|..+++.+-+..
T Consensus 892 ~~-~~~~~~~~~~~l~~~l~~L~~fF~a~g~gl~~~~l~~~~~~~~l~~~l~l~~~~T~~LI~~y~~~~ 959 (961)
T 5UE8_A 892 EE-AKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQTQ 959 (961)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTTSCCHHHHHTCHHHHHHHHHHTTTTTC------------
T ss_pred hh-ccCCCHHHHHHHHHHHHHHHHHhhcCCCCCCHHHhccCccHHHHHHHHHhcccCHHHHHHHHhhhc
No 105
>8B3D_c UV-stimulated scaffold protein A; DNA repair, ubiquitin, transcription, cryo-EM; HET: ADP, ZN;{Sus scrofa domesticus}
Probab=28.44 E-value=7.5e+02 Score=29.04 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHhc------CCC
Q FD01850236_028 114 GGYYEEINKVLNE----IQELYKKTYSQNSGRISGE----------EFFGQRERLFKQLDGILNKFSKEQL------NLK 173 (333)
Q Consensus 114 ~~~l~~I~~~L~~----Ie~ly~~~~~~~~G~l~~~----------~F~a~R~~Lf~~LD~~L~~~~r~~~------gl~ 173 (333)
..+|++++...++ ++.+|.-.+.+- .+-..+ +||.+-...-..|-..|..|+...+ .||
T Consensus 22 ~~~lk~lK~~ck~sd~~v~~~~~~L~~~L-~k~hsqiRl~al~lid~LF~RS~~FR~ll~~~l~~fl~l~~g~~~~~pLP 100 (709)
T 8B3D_c 22 PEKMKELKKICKSSEEQLSRAYRLLIAQL-TQEHAEIRLSAFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLP 100 (709)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCSHHHHHHHTTHHHHHHHHTCCSTTSCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh-chhCCHHHHHHHHHHHHHHHhCHHHHHHHHhhHHHHHHHHhCCCCCCCCC
Q ss_pred ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 174 QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 174 ~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k 219 (333)
+....-+.|.--+-.++..|. ..|+..+.++.-+.+|||
T Consensus 101 pP~~~A~~Lk~~al~~i~~W~-------~kfG~~y~~L~la~~yLk 139 (709)
T 8B3D_c 101 PPREAAQRLRQATTRAVEGWN-------EKFGEAYKKLALGYHFLR 139 (709)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-------HHHTTTCHHHHHHHHCCC
T ss_pred ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
No 106
>7WKK_H IL4I1 protein; nuclear pore complex, inner ring, Nup205, Nup93, Nup188, Nup155, NDC1, Aladin, STRUCTURAL PROTEIN; 4.2A {Xenopus laevis}
Probab=28.44 E-value=5.7e+02 Score=29.15 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 49 SRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 49 ~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
+.+ ..++.+....|.+|+..=..|=+.-..+..=|.++...-+ ...-+----+....+-+++++.|.-+
T Consensus 366 s~ELe~qek~Fl~qAt~V~aWD~tLieNGekitaL~~e~~Kak~----------~Q~RLE~eLd~IlsqQkELed~Lt~l 435 (547)
T 7WKK_H 366 SLELEDQEKHFLQQATQVNAWDRTLMQNGERITTLHREMEKVKL----------DQKRLDQELDFILSQQKELEDLLTPL 435 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhhhHHHHHHHHcCceeeHHHHHHhHHhh----------cHHHHHHHHHHHHHchHHHHHHHhhh
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH
Q FD01850236_028 128 QELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQ 177 (333)
Q Consensus 128 e~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~ 177 (333)
|..++++.... -.-..++=.+++=+|-+.+|.+|.+|.+..-.+-+|-+
T Consensus 436 E~svk~qsgs~-~lq~~deErE~tYkLAEnIdaqLKrMaqDLkdIIEhLN 484 (547)
T 7WKK_H 436 EESVKEQSGTI-YLQHADEEREKTYKLAENIDAQLKRMAQDLKEVIEHLN 484 (547)
T ss_dssp HHHHHHHHHHH-TSSSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcce-eccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>3VRC_B Cytochrome c'; c-type cytpchrome, ELECTRON TRANSPORT; HET: PG4, HEC; 1.0A {Thermochromatium tepidum} SCOP: a.24.3.2
Probab=28.40 E-value=4.2e+02 Score=22.62 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH---HhCCCHHHHHhcc-HhhC-Cc--------------cCch
Q FD01850236_028 143 SGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQ---ALGLSTKSIMHKW-DQTG-VR--------------DIEG 203 (333)
Q Consensus 143 ~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~---~LGlStKSivH~W-~~~g-~g--------------~Ipg 203 (333)
.+++..+.|+.+++.++..+..+.....+--+...+.+ .|.-....+.+.| .... .+ .-+.
T Consensus 4 ~~~~~v~~r~~~M~~~~~~~~~l~~~~~~~~d~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~iw~~~~~ 83 (131)
T 3VRC_B 4 SPEEQIETRQAGYAFMAWNMGKIKANLEGEYNADQVRAAANVVAAIANSGMGALYGPGTDKNVGAVKTRAKPELFQNLED 83 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTSCGGGGCCTTTTSCBTTBCCCBCHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhchhhcCCCCCCCCCCccccCCCHHHHhCHHH
Q ss_pred HHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHHHHH
Q FD01850236_028 204 YASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYEACA 242 (333)
Q Consensus 204 ya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~eAC~ 242 (333)
|.......-..+..+...---+=--........|.+.|.
T Consensus 84 f~~~~~~~~~~~~~l~~a~~~~d~~~~~~~~~~v~~~C~ 122 (131)
T 3VRC_B 84 VGKLARDLGTAANALAAAAATGEANAVKSAFADVGAACK 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
No 108
>7JJ8_D Zinc-binding lipoprotein AdcA; AdcA, ZnuA, SBP, ATP-binding cassette transporter, Zn acquisition, metal binding protein; 2.03A {Streptococcus pneumoniae (strain ATCC BAA-255 / R6)} SCOP: c.92.2.0
Probab=28.19 E-value=5.1e+02 Score=25.81 Aligned_cols=114 Identities=13% Similarity=0.106 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKS 188 (333)
..+....+.|.+.|.++.-.+.+.|.++ ...|..+-.+|-+.++..+..+-.+.+ .-+.+.-+=+.+|+....
T Consensus 120 ~~~~~~a~~i~~~L~~~~P~~~~~~~~n-----~~~~~~~l~~l~~~~~~~l~~~~~~~v~~~h~~~~yf~~~~gl~~~~ 194 (299)
T 7JJ8_D 120 VRAIKLVEHIRDSLSADYPDKKETFEKN-----AAAYIEKLQSLDKAYAEGLSQAKQKSFVTQHAAFNYLALDYGLKQVA 194 (299)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHH-----HHHHHHHHHHHHHHHHHHhHhhCCCeEEeechHHHHHHHHhCCEEEE
Q ss_pred HH--hccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHH
Q FD01850236_028 189 IM--HKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYE 239 (333)
Q Consensus 189 iv--H~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~e 239 (333)
++ . ++....-+.+.+..+.+|..+.--|-.+.......+..
T Consensus 195 ~~~~~----------~~~~~s~~~l~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 237 (299)
T 7JJ8_D 195 ISGLS----------PDAEPSAARLAELTEYVKKNKIAYIYFEENASQALANT 237 (299)
T ss_dssp CCSCC----------TTCCCCHHHHHHHHHHHHHHTCCEEEESSCCCHHHHHH
T ss_pred cccCC----------CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHH
No 109
>6EC8_A Lantibiotic dehydratase domain protein; RiPP, thiopeptide, thiomuracin, tRNA-dependent, glutamylation, dehydratase, BIOSYNTHETIC PROTEIN; HET: J4G; 2.148A {Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)}
Probab=27.98 E-value=9.8e+02 Score=27.74 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHCHHHHHH------------HHhhhccccccchhHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPL-------TNEEAKLLYENRTPIDM------------FSSNIYSDALGQSGDIFGYIKDA 112 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~L-------s~~ea~fl~~~~~~l~~------------~~~~~~~d~~~~~s~~~G~~~~~ 112 (333)
...++.|..+++.+.+.|..+ +++.+..+.+-.--|.+ +. ..-+......-..
T Consensus 50 ~~~~~~l~~~~~~l~~~L~~~i~~~~~~~~~~rr~ll~lkR~i~n~~~~~~~~~~~~~~--------~~l~~~~~~~l~~ 121 (861)
T 6EC8_A 50 VRETAWLKGEGKRLAVDLGLLIGERGDGDDGLRPVLVGLRRALHTGRLPDAREWTPRVA--------SALPAELAARVAD 121 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHTCCCCTTTSCHHHH--------HHSCHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHcCCCCChhhccHHHH--------HhCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhc
Q FD01850236_028 113 GGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHK 192 (333)
Q Consensus 113 ~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~ 192 (333)
|....+.+....+++++.|.+.+... |+.|.+-++ ++.++++|-+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------r~~L~~~~~---------------~~~f~~aL~lssp~l~~~ 174 (861)
T 6EC8_A 122 WVTRMRALTRARRELPELFAAEARVK------------EKVLAQVAA---------------DPGFRRALSLASPELAAD 174 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHT---------------CHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHc---------------CHHHHHHHHHhCHHHHHH
Q ss_pred cHh
Q FD01850236_028 193 WDQ 195 (333)
Q Consensus 193 W~~ 195 (333)
+.+
T Consensus 175 l~~ 177 (861)
T 6EC8_A 175 LDR 177 (861)
T ss_dssp HHH
T ss_pred HHH
No 110
>7NFJ_A CC-Type2-(LaId)4-L28Y; Coiled coil, synthetic peptide, homomeric assembly, DE NOVO PROTEIN; HET: ACE; 1.19A {N/A}
Probab=27.80 E-value=1.6e+02 Score=20.10 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 113 GGGYYEEINKVLNEIQELYK 132 (333)
Q Consensus 113 ~~~~l~~I~~~L~~Ie~ly~ 132 (333)
..+.+++|.=.|++|.++|+
T Consensus 11 iakalkeiawalkeiaqayk 30 (32)
T 7NFJ_A 11 IAKALKEIAWALKEIAQAYK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
No 111
>6PMI_F RNA polymerase sigma factor FliA; sigma28, transcription initiation complex, RpoF, ZNR domain, TRANSCRIPTION; HET: ATP; 3.86A {Escherichia coli O157:H7}
Probab=27.65 E-value=6.9e+02 Score=22.52 Aligned_cols=112 Identities=15% Similarity=0.021 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC---------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcC
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYHQLNPEK---------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPL 72 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl---------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~L 72 (333)
.+..+.+++...+ ..+.............. .-.......+.++.... ..+.....+....+..++..|
T Consensus 112 ~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L 189 (247)
T 6PMI_F 112 GRNATETEVAERL--GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 (247)
T ss_dssp SSCCCTHHHHHHT--TTCHHHHHHHHHHHSCCCCCSSCBCSSSSSCBSTTSCCCSSCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHh--CCCHHHHHHHHHHhhhccCcchHHhccccCCceeecccccCCCCHHHHHhhHHHHHHHHHHHHhC
Q ss_pred CHHHHHHHHHCH------HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 73 TNEEAKLLYENR------TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 73 s~~ea~fl~~~~------~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
++.+...+..+| ..|...+ |.......+.+..+.+.|++.-..+
T Consensus 190 ~~~~~~i~~~~~~~~~s~~eia~~l---------------g~s~~~v~~~~~~a~~klr~~~~~~ 239 (247)
T 6PMI_F 190 PEREKLVLTLYYQEELNLKEIGAVL---------------EVGESRVSQLHSQAIKRLRTKLGKL 239 (247)
T ss_dssp CHHHHHHHHHHHSSCCCSHHHHHHH---------------CSTTHHHHHHHHHHHHHHSSSCCCC
T ss_pred CHHHHHHHHHHcccCCCHHHHHHHh---------------CCCHHHHHHHHHHHHHHHHHHHHHh
No 112
>PF03114.22 ; BAR ; BAR domain
Probab=27.42 E-value=6.3e+02 Score=22.41 Aligned_cols=123 Identities=7% Similarity=-0.009 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCH----------------------HHHHHHHhhhccccccch
Q FD01850236_028 46 DPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENR----------------------TPIDMFSSNIYSDALGQS 102 (333)
Q Consensus 46 dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~----------------------~~l~~~~~~~~~d~~~~~ 102 (333)
||+-.. ..+...++.....+...+..+......+..... .+-+.+. ..+
T Consensus 25 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~ 96 (236)
T SH3G3_DROME/6- 25 DMDFMEMERKTDVTVELVEELQLKTKEFLQPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGLLAECML--------TYG 96 (236)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhHHhhccCCCCCCCCCcHHHHHHHHH--------HHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHH
Q FD01850236_028 103 GDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLF-KQLDGILNKFSKEQLNLKQYEQIKQA 181 (333)
Q Consensus 103 s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf-~~LD~~L~~~~r~~~gl~~~~~lK~~ 181 (333)
........ .....+....+.+++|...+.+..... ...|..--+.+. ..+...-..+-++.--..+|+..++.
T Consensus 97 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 170 (236)
T SH3G3_DROME/6- 97 KKLGEDNS-VFAQALVEFGEALKQMADVKYSLDDNI-----KQNFLEPLHHMQTKDLKEVMHHRKKLQGRRLDFDCKRRR 170 (236)
T ss_pred HHHCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q FD01850236_028 182 L 182 (333)
Q Consensus 182 L 182 (333)
+
T Consensus 171 ~ 171 (236)
T SH3G3_DROME/6- 171 Q 171 (236)
T ss_pred H
No 113
>2Q1Z_A RpoE, ECF SigE; ECF sigma factor, anti-sigma factor, cupin fold, Zinc binding transcription factor, TRANSCRIPTION; 2.4A {Rhodobacter sphaeroides}
Probab=27.25 E-value=5.9e+02 Score=21.64 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCH---HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENR---TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEI 120 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~---~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I 120 (333)
.++.... ........+....+...+..|++.+...+..+| .-.+.+. ..-+...+.+.....+-.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~~~~~~~~~~~~~~~~eia--------~~l~~s~~~v~~~~~r~~~~l 179 (184)
T 2Q1Z_A 108 WGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELA--------AETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCST--------TTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcHHHHH--------HHHCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q FD01850236_028 121 NKVLN 125 (333)
Q Consensus 121 ~~~L~ 125 (333)
++.|+
T Consensus 180 ~~~l~ 184 (184)
T 2Q1Z_A 180 RQHMS 184 (184)
T ss_dssp HHHC-
T ss_pred HHhcC
No 114
>7QWB_D CC-Type2-(Ue)4; aib, coiled coil, hexamer, antiparallel, 2-Aminoisobutyric acid, DE NOVO PROTEIN; HET: AIB, 4BF; 1.64A {N/A}
Probab=27.16 E-value=2.9e+02 Score=19.01 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q FD01850236_028 113 GGGYYEEINKVLNEIQELYKKTYS 136 (333)
Q Consensus 113 ~~~~l~~I~~~L~~Ie~ly~~~~~ 136 (333)
..+.+++|.+.|++|..+.++...
T Consensus 4 i~qalkei~kalkei~~alkei~q 27 (32)
T 7QWB_D 4 IXQALKEIXKALKEIXXALKEIXQ 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 115
>PF20721.1 ; C19orf12 ; C19orf12-like protein
Probab=26.94 E-value=1.1e+02 Score=28.02 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hhhcceeEEEeccchhhHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHH
Q FD01850236_028 246 ESECRKAAIIEYSKFGGKQTASAF-GGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAG 324 (333)
Q Consensus 246 e~~C~k~~~~E~g~f~G~~~GG~~-Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~G 324 (333)
++++-|+...+..+-.++...|.+ |+.++ ++.+.++.+++ ++.+|.+.+......+.
T Consensus 28 ~~~~~k~~v~~~~~~~~~~~~ga~iG~~lg-------------------GP~G~~iGg~~---G~~~g~~~~~~~~k~v~ 85 (151)
T A0A1Z5JBE6_FIS 28 NNQDMRQTGTQSLKQGLMAGGGAVAGGLLF-------------------GPVGGLLGGIV---GSLAGFWSVSDYDGAVQ 85 (151)
T ss_pred hChhHHHhccccHhhhHHHHHHHHHHHHhh-------------------chHHHHHHHHH---hHHhhhhccccccccHH
Q ss_pred HHHHhh
Q FD01850236_028 325 ESLGKV 330 (333)
Q Consensus 325 e~~Ge~ 330 (333)
+.+ +.
T Consensus 86 ~ii-~l 90 (151)
T A0A1Z5JBE6_FIS 86 QIL-RV 90 (151)
T ss_pred HHH-hC
No 116
>7UN6_C Nucleosome assembly protein 1-like 1; Ubiquitylation, CYTOSOLIC PROTEIN; 3.3A {Homo sapiens}
Probab=26.93 E-value=7.1e+02 Score=27.26 Aligned_cols=126 Identities=8% Similarity=0.084 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CC--CcCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCHHHHHHHHhhhccccccchhHH
Q FD01850236_028 33 EK--KKKPGSILVVADPLSRSPEKIAQIQTARDKIDKALEPLT-----NEEAKLLYENRTPIDMFSSNIYSDALGQSGDI 105 (333)
Q Consensus 33 hl--~v~pGqivIl~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls-----~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~ 105 (333)
|. +.-.+....++||.+........-+.....+...-.... ......+.++..++..+. ..-...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 84 (416)
T 7UN6_C 13 HDIDYKDDDDKAGSADIDNKEQSELDQDLDDVEEVEEEETGEETKLKARQLTVQMMQNPQILAALQ--------ERLDGL 84 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCccCccccccccCCccchhhhHHcchhHHHHHHHHhcCchhhHHHHHHHHHHHhCHHHHHHHH--------HHHhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q FD01850236_028 106 FGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNL 172 (333)
Q Consensus 106 ~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl 172 (333)
++..+..+...-..|++.++.|..+..+...-. .+|+.++.+|-.+.......+..++..+
T Consensus 85 ~~~~~~~~~~lp~~vkrrv~aLk~lQ~e~~~le------~ef~~ev~~Le~ky~~~~~pl~~kR~~I 145 (416)
T 7UN6_C 85 VETPTGYIESLPRVVKRRVNALKNLQVKCAQIE------AKFYEEVHDLERKYAVLYQPLFDKRFEI 145 (416)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHhcCCHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHHHHHHHHhhHHHhhcccc
No 117
>PF17542.6 ; RP853 ; Uncharacterized RP853
Probab=26.82 E-value=1.9e+02 Score=30.37 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=0.0 Template_Neff=3.100
Q ss_pred HHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q FD01850236_028 273 AGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESL 327 (333)
Q Consensus 273 ~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~ 327 (333)
+.+..+.++|.++.|.++..++|..+-+..|- +.+..--++-..|+.+|+.+
T Consensus 204 ~t~KI~~a~~~l~vgsIsva~~G~alp~liVP---a~i~AiKyAP~iGEkiG~~I 255 (317)
T Y853_RICPR/1-3 204 TTGKIVGAVCALLVGAISVATAGAAFSIIIVP---TLIFAIRYAPALGEKIGEFI 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHH
No 118
>7UIO_Bg Mediator of RNA polymerase II transcription subunit 7; Divergent transcription, Mediator, RNA Polymerase II, PIC, Pre-Initiation, Activation, Transcription Factor, Gal4, Gal4VP16, TRANSCRIPTION; 3.3A {Saccharomyces cerevisiae S288C}
Probab=26.70 E-value=7e+02 Score=24.62 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q FD01850236_028 77 AKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFK 156 (333)
Q Consensus 77 a~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~ 156 (333)
..++..+.++++.+. ...+ .+...+++|+.++.++..+- +.|+.+ +-|..|..
T Consensus 124 ~sll~~fl~Ll~~L~--------~~P~--------~~~~kl~~i~~l~~Nmhhll-N~~Rp~----------QAretL~~ 176 (222)
T 7UIO_Bg 124 KSLLLNYLELIGVLS--------INPD--------MYERKVENIRTILVNIHHLL-NEYRPH----------QSRESLIM 176 (222)
T ss_pred HHHHHHHHHHHHHHh--------hChh--------HHHHHHHHHHHHHHHHHHHH-HhhCHH----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHHh
Q FD01850236_028 157 QLDGILNKFSKEQLNLKQY-EQIKQAL 182 (333)
Q Consensus 157 ~LD~~L~~~~r~~~gl~~~-~~lK~~L 182 (333)
.|..++.+.-...-.+... .++++.|
T Consensus 177 ~l~~Qi~~rr~~~~~l~~~~~~~~~~l 203 (222)
T 7UIO_Bg 177 LLEEQLEYKRGEIREIEQVCKQVHDKL 203 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>PF10475.13 ; Vps54_N ; Vacuolar-sorting protein 54, of GARP complex
Probab=26.68 E-value=8.7e+02 Score=23.40 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHhCCCHH
Q FD01850236_028 109 IKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQY-EQIKQALGLSTK 187 (333)
Q Consensus 109 ~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~-~~lK~~LGlStK 187 (333)
.........+.+...++.++.--.+....+ ++.|+..-..+ .+|+..+.......-.+... ..+++.+-.++.
T Consensus 34 ~~~~~~~~~~~l~~~l~~v~~~l~~~v~~~-----~~~f~~~~~~i-~~l~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~ 107 (299)
T Q54MU4_DICDI/7 34 FSIFLDSNVKQFTRAMDYVNSKLYNRVREN-----YTEFVQGMSQI-HEIGVELQRSTVMCSNGRRTLSQTKKNLTQTAF 107 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q ss_pred HHHhccHhhC-CccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 188 SIMHKWDQTG-VRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 188 SivH~W~~~g-~g~Ipgya~~i~~vak~ak~~k 219 (333)
.+...+.+.- ...+-..-+.+..+....+.++
T Consensus 108 ~i~~~~~~~~~l~~~~~~L~~i~~l~~~~~~l~ 140 (299)
T Q54MU4_DICDI/7 108 IIMSKYTKRNLLTKMYMDLSQIREIVHLERLLK 140 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 120
>5T51_A KLLA0F02343p; cell cycle, kinetochore, complex, chromosome, segregation, MIND, Mis12; 2.2007A {Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)}
Probab=26.45 E-value=6.7e+02 Score=21.96 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCCCh
Q FD01850236_028 109 IKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK--------FSKEQLNLKQY 175 (333)
Q Consensus 109 ~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~--------~~r~~~gl~~~ 175 (333)
.........+.+.+.++.+++.-.+.+... +.....+.-.-..+|+.+|...+++ +++..+.+|++
T Consensus 24 iddv~n~v~~~~~d~~d~le~~l~~~~~~~-~~~~~~~l~~g~~~l~~~l~~~~dk~~d~fE~y~l~niF~IP~~ 97 (120)
T 5T51_A 24 VDDIINAVNEIMYKCTNAMEKYLMQRNIIG-KKDFSDEIKIGTAKLESLLENSVDKNFDKLELYVLRNILSIPSD 97 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEET-TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcc
No 121
>PF06511.15 ; T3SS_TC ; Type III secretion systems tip complex components
Probab=26.38 E-value=1.6e+02 Score=31.26 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHH-HHHHHHHHHHHHHHHH
Q FD01850236_028 46 DPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFG-YIKDAGGGYYEEINKV 123 (333)
Q Consensus 46 dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G-~~~~~~~~~l~~I~~~ 123 (333)
|..... .-...+|....+.......+|++++++.+......-..+. ........ .....-...++.|.+.
T Consensus 66 ~~~~~~~~l~~~~~~~~l~~l~~~~~~l~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~S~~e~~~~I~~~ 137 (337)
T SIPD_SALTY/5-3 66 EENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSAL--------FSASPMAQPRTTISDAEIWDMVSQN 137 (337)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCChhHh--------hccCCCCCCCCCCChHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 124 LNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGIL 162 (333)
Q Consensus 124 L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L 162 (333)
+..|++-|.+.|..- --...+||..=..++.+|..-+
T Consensus 138 I~~ik~~YL~~Ye~~--v~kYt~fy~dfn~i~skl~~~I 174 (337)
T SIPD_SALTY/5-3 138 ISAIGDSYLGVYENV--VAVYTDFYQAFSDILSKMGGWL 174 (337)
T ss_pred HHHHchhhHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc
No 122
>7WOO_L Nucleoporin NSP1; nuclear pore complex, inner ring, protomer, Saccharomyces cerevisiae, TRANSPORT PROTEIN; 3.71A {Saccharomyces cerevisiae}
Probab=26.34 E-value=1.1e+03 Score=27.88 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHC--------HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYEN--------RTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKV 123 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~--------~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~ 123 (333)
..+++.++...+++++.|..|..+....+.+. ..-.+.-- .......-.+..-+..+-++++++
T Consensus 694 ~~~Ld~ie~qQ~el~~~L~~lE~~~~~~~~~~~~~~~~~~~~~~d~~R--------~~~y~la~~l~~qL~~l~~~L~~l 765 (823)
T 7WOO_L 694 DQSLQYIERQQDELENFLDNFETKTEALLSDVVSTSSGAAANNNDQKR--------QQAYKTAQTLDENLNSLSSNLSSL 765 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCSSSSCBTTSCCTT--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccchHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 124 LNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 124 L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
+++|+++..............++ .-.++.+-|+.+|+.|
T Consensus 766 i~~ln~~~~~~~~~~~~~~~~~d---~~~qi~~iLn~h~~sL 804 (823)
T 7WOO_L 766 IVEINNVSNTFNKTTNIDINNED---ENIQLIKILNSHFDAL 804 (823)
T ss_dssp HHHHHHHHHHHHSSSSSSSCSSC---SCCTTHHHHHCCCCCC
T ss_pred HHHHHHHhhhhccccCCCcCCCC---HHHHHHHHHHHHHHHH
No 123
>PF01442.22 ; Apolipoprotein ; Apolipoprotein A1/A4/E domain
Probab=26.33 E-value=8.3e+02 Score=23.06 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHH------HHHH-CHHHHHHHHhhhccccccchhHHHHHHHHHHHHH----HHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAK------LLYE-NRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGY----YEEINKVL 124 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~------fl~~-~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~----l~~I~~~L 124 (333)
+.+......+...|.+...+-.+ .+.. +.+-+..-+ ....--+......+ ++.+...|
T Consensus 58 ~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~l~~~L-----------~~~~~~l~~~~~~~~~~~~~~l~~~l 126 (196)
T B8ETT5_METSB/7 58 AQLGATIDAVDAHLEEISRRLAVVSESSVGALAEQTAALQDRL-----------SAVARTVNEHAGEISRRLASSARDSV 126 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCh-HHHHHHhCCCHHHHHhccHh
Q FD01850236_028 125 NEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL-NLKQY-EQIKQALGLSTKSIMHKWDQ 195 (333)
Q Consensus 125 ~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~-gl~~~-~~lK~~LGlStKSivH~W~~ 195 (333)
...-+-++. +... -+++-..=.....++...|.......- .+.++ .+++..|.-....+-.++..
T Consensus 127 ~~~~~~~~~-l~~~-----l~~l~~~l~~~~~~~~~~l~~~~~el~~~~~~~~~~l~~~l~~~~~~l~~~l~~ 193 (196)
T B8ETT5_METSB/7 127 GTLAERTQA-LEQR-----IEAALSLLNEKSDAIGERLASTAEQSADAVAGQSEALRERLGAAIAALTAHNEE 193 (196)
T ss_pred HHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>4HKU_B TetR transcriptional regulator; structural genomics, PSI-Biology, protein structure initiative, midwest center for structural genomics, MCSG, TRANSCRIPTION; HET: MSE; 2.302A {Listeria monocytogenes}
Probab=26.31 E-value=2e+02 Score=23.85 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 158 LDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 158 LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
|+..+.-+.+++..-..-.+|-+.+|+|..++.|||.
T Consensus 13 l~a~~~~~~~~g~~~~s~~~ia~~~gvs~~~iy~~F~ 49 (178)
T 4HKU_B 13 LNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYR 49 (178)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTCCSTTTTTTCS
T ss_pred HHHHHHHHHHHCCccccHHHHHHHcCCCHHHHHHHcC
No 125
>PF09733.13 ; VEFS-Box ; VEFS-Box of polycomb protein
Probab=26.06 E-value=7e+02 Score=22.11 Aligned_cols=104 Identities=8% Similarity=-0.060 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CcCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHH-HHHHHHH
Q FD01850236_028 35 KKKPGSILVVADPLSRSPEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIF-GYIKDAG 113 (333)
Q Consensus 35 ~v~pGqivIl~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~-G~~~~~~ 113 (333)
++.|||++ ++++......+..+.+.-+..-..+..+++.|.+||..--..+...- -.+...+ ...-...
T Consensus 28 pl~~~e~~--~~~dSdde~d~~w~~~~~~~~i~~~~d~~~~Ek~fm~~WN~f~~~~~--------~~~~~~~~~~~~~F~ 97 (138)
T M4DX32_BRARP/2 28 PMSLEQVM--SDRDSEDEVDDDVADLEDRQMLDDFVDVNKNEKRFMHLWNSFVRKQR--------VVADGHIPWACEAFS 97 (138)
T ss_pred EcchHHhh--cCCCCccccChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--------ccccccHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhcCCCCCHHHHHH
Q FD01850236_028 114 GGYYEEINK--VLNEIQELYKKTYSQNSGRISGEEFFG 149 (333)
Q Consensus 114 ~~~l~~I~~--~L~~Ie~ly~~~~~~~~G~l~~~~F~a 149 (333)
.+|-+.+.. .|..-=-.|...+..+ |-|..+.+..
T Consensus 98 ~~~~~~l~~~~~l~~~f~~hl~~L~~~-gli~~~~i~~ 134 (138)
T M4DX32_BRARP/2 98 KFHKEELLHSSPLFWCWRLFMIKLWNI-GLVDSATINN 134 (138)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHHHC-CCCCHHHHHh
No 126
>8TID_A Dynein regulatory complex protein 1/2 N-terminal domain-containing protein; nexin-dynein regulatory complex, cilia, axoneme, dynein, STRUCTURAL PROTEIN; 3.6A {Tetrahymena thermophila}
Probab=26.01 E-value=1.4e+03 Score=27.75 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 53 EKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYK 132 (333)
Q Consensus 53 ~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~ 132 (333)
...+.-...-+...+.|..-+++-...+.+|-+-|+.++ +.+.+-++.+.+.|.
T Consensus 103 ~lLd~Kd~lI~eL~~ELk~~DeqYvk~Lrkq~edId~Li--------------------------erme~Qv~~L~~aYr 156 (826)
T 8TID_A 103 QIIEGKENLRKEFEEELKRKDDEYVKMLKEQSNDIKDMI--------------------------SKMRSQFYKIRDANM 156 (826)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q FD01850236_028 133 KTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQ 169 (333)
Q Consensus 133 ~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~ 169 (333)
+.+..- ...|-.+|+.|+.+-......+....
T Consensus 157 eEL~~I-----E~af~~ER~~ll~~~~~ewe~L~~~~ 188 (826)
T 8TID_A 157 QELEDI-----ERHFEQERSNLLNEFKAKIQATFKKH 188 (826)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>PF05476.15 ; PET122 ; PET122
Probab=26.00 E-value=77 Score=32.41 Aligned_cols=64 Identities=9% Similarity=0.240 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH-hCCCHHHHHhcc
Q FD01850236_028 126 EIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQA-LGLSTKSIMHKW 193 (333)
Q Consensus 126 ~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~-LGlStKSivH~W 193 (333)
++-+.+.+.|.+ |+.....|-++=+..++.+|+.|.. ...+...|.|.|-+. ++-.....+..|
T Consensus 116 eLlRikVEsfAk--~t~~~TsFrEKWKvFLediD~~lp~--~~~~~vrDFP~Lt~S~l~~~~~~~l~~~ 180 (261)
T H2AQ87_KAZAF/2 116 ELLRSKVEAFAR--GTGMKTEFSEKWKVFLEDIENELPK--NVVYRIRDFPHLTKGVKTKKDRDTLQDL 180 (261)
T ss_pred HHHHHHHHHHhc--CCCCCCcHHHHHHHHHHHHhhcCCC--CCeeEeecChhhccccccCCCHHHHHHH
No 128
>6WMT_Z RNA polymerase sigma factor RpoD; RNA polymerase complex, TRANSCRIPTION; HET: G4P; 4.43A {Francisella tularensis subsp. holarctica (strain LVS)}
Probab=25.98 E-value=9.7e+02 Score=26.52 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCCCHHHHHHHhhCCCChHHHHHHHHHCCCC----CcCCCcEE----EecCCCCCCHHHHHHHHHHHHHHHHHH-hcCCH
Q FD01850236_028 4 ELTTPKSYECELMVNPPSGVKELYHQLNPEK----KKKPGSIL----VVADPLSRSPEKIAQIQTARDKIDKAL-EPLTN 74 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl----~v~pGqiv----Il~dP~~~~~~ee~~L~~~A~~v~~~l-~~Ls~ 74 (333)
+..|.+++...+..-+...+.+.+..-.... ++-.++-. .+.||....+.+.....+....+...| ..|++
T Consensus 440 ~~p~~~ela~~~~~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~ 519 (577)
T 6WMT_Z 440 REATEEEIIEHTPNMSKEKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKELIETGLTE 519 (577)
T ss_dssp CSCCHHHHHHTCSSCCSHHHHHHTTSCCCCCBTTCBCSSGGGCBHHHHCBCCSSCCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCChHHhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCH
Q ss_pred HHHHHHHHCHH-------HHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYENRT-------PIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 75 ~ea~fl~~~~~-------~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
.++..+.-+|. .++.+. ..-+..-..+-.-..+.++.+++.++.
T Consensus 520 re~~vl~lr~~~~~~~~~tl~eia--------~~~~~s~~~vrqi~~~al~kLr~~~~~ 570 (577)
T 6WMT_Z 520 REAKVLMMRFGIGMNTDHTLEEVG--------KQFNVTRERIRQIEAKALRKLKHPSRS 570 (577)
T ss_dssp HHHHHHCCCCCSSCSSCCCHHHHH--------HHHTSCTTHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHhCCCCCCCccHHHHH--------HHcCCCHHHHHHHHHHHHHHccChhhH
No 129
>6V1V_D Vegetative insecticidal protein; insecticidal protein Bacillus thuringiensis pore forming, TOXIN; 3.189A {Bacillus thuringiensis}
Probab=25.83 E-value=1.7e+03 Score=26.33 Aligned_cols=140 Identities=8% Similarity=0.032 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHhcCCHH---HHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q FD01850236_028 63 DKIDKALEPLTNE---EAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNS 139 (333)
Q Consensus 63 ~~v~~~l~~Ls~~---ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~ 139 (333)
..+-+.|-+++.| ....+..+.+.|+.++ ...-..+-..-+-..+.+..|+..++++++.-++...+.
T Consensus 98 ~~~~~~~~~i~~~q~~~~~~in~~~~~i~~~~--------~~~l~~i~~~l~~i~~ql~~i~~~i~~l~~~l~~l~~~l- 168 (796)
T 6V1V_D 98 SELAKELLKISNEQNQMLNHVNAQLNAINSTL--------NIYLPKITSMLNEVMKQNHVLSLQIEFLSKQLQEISDKL- 168 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Q ss_pred CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCChHHHHHH----hCC-CHHHHHhccHhhC---CccCchHHHH
Q FD01850236_028 140 GRISGEEFFGQR----ERLFKQLDGILNKFSKEQLNLKQYEQIKQA----LGL-STKSIMHKWDQTG---VRDIEGYASY 207 (333)
Q Consensus 140 G~l~~~~F~a~R----~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~----LGl-StKSivH~W~~~g---~g~Ipgya~~ 207 (333)
-.+....-+..+ ..+++++|..-++|....-....+.+-++. ..+ +..++..-.+..- ...++.+-.+
T Consensus 169 ~~i~~~~~l~~~l~ei~~~~~rI~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~fa~~~~s~~~~~l~~~L~~ 248 (796)
T 6V1V_D 169 DIINLNVLINSTLTEITPAYQRIKYVNEKFDELTSTVEKNPKSYQDNVTKEVIENLNELTELAKSVTKNDMDSFEFYLQT 248 (796)
T ss_dssp CC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------CHHHHHHHHHHHCCSTTCHHHHHHH
T ss_pred ccCCHHHHhhcccccccHHHHHHHHHHHHHHHHHhchhcCCccccCCCchhhhccHHHHHHHHHHHhCCCCCCHHHHHHH
Q ss_pred HHHH
Q FD01850236_028 208 IEKS 211 (333)
Q Consensus 208 i~~v 211 (333)
|.++
T Consensus 249 ih~~ 252 (796)
T 6V1V_D 249 FHDV 252 (796)
T ss_dssp HHHH
T ss_pred HHHH
No 130
>6CFZ_F Dad1,Dad1; DASH, Dam1 complex, Ask1, Dad1, Dad2, Dad3, Dad4, Dam1, Duo1, Hsk3, Spc19, Spc34, kinetochore, kinetochore-microtubule interface;{Chaetomium thermophilum}
Probab=25.81 E-value=2.5e+02 Score=24.20 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHh
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQ 195 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~ 195 (333)
..|-.+|.+|+.++...|..+....-.|...-.==...|-.-.++-|-|..
T Consensus 2 s~Fe~eR~~Li~eI~~~le~vl~nln~LNRnLE~v~~VG~eF~~vs~LW~~ 52 (92)
T 6CFZ_F 2 SYFEQQRQALIEEIAMNFEHVLANINKLNRSLEAVIAVGNEFSSVEALWSQ 52 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcchhHHHHHHH
No 131
>PF09763.13 ; Sec3_CC ; Exocyst complex component Sec3, coiled-coil
Probab=25.77 E-value=6.4e+02 Score=21.51 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q FD01850236_028 62 RDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGR 141 (333)
Q Consensus 62 A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~ 141 (333)
..++...|..+.......+....+-+..+. ..........-........+-..+....++|...-.+. ..
T Consensus 5 ~~~l~~~l~~le~~~i~~~l~~~~~~~~l~-----~~l~~~~~~l~~le~~l~~~~~~L~~~~~~i~~ie~~~--~~--- 74 (133)
T Q5K9I2_CRYNJ/4 5 ENRLLDELTALDSAIIHAFLESDDRTAQVL-----AHIDEALMELDDIDLQITGYRMQLNAVSDDISYIESQG--KG--- 74 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 142 ISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 142 l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
-+.....|+.+...|...++.+
T Consensus 75 --l~~~~~n~~~l~~~L~~~v~~l 96 (133)
T Q5K9I2_CRYNJ/4 75 --LQVQTSNQQVLLNELRQLLQIV 96 (133)
T ss_pred --hhHHHHHHHHHHHHHHHHHHhc
No 132
>4XCP_A Nematode fatty acid retinoid binding protein; Fatty acid retinol binding, retinol-binding protein; HET: PLM, MSE; 2.14A {Necator americanus}
Probab=25.73 E-value=4.2e+02 Score=24.52 Aligned_cols=81 Identities=10% Similarity=0.013 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
..++.....+.+.+..|+|+..+|+.+-++.+..+. ...-.+...-...+.+.+..+.+..+.|..--++.+
T Consensus 76 ~k~~~~~~~~~~k~~~Ls~eaK~Fv~~~~~~~~~l~--------~~~~~g~~~~~~~l~~~~~~i~~~y~~Ls~~~K~~l 147 (170)
T 4XCP_A 76 AKVEKLHAMVKSKIAALGPEAKGFAEKSIEIARGIK--------ARYYTGNEPTKDDLKASVKEVLKLYKAMSDAGKADF 147 (170)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH--------HHHHSSSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--------HHhhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred hhcCCCCCHHHHHH
Q FD01850236_028 136 SQNSGRISGEEFFG 149 (333)
Q Consensus 136 ~~~~G~l~~~~F~a 149 (333)
.+. -|.+..
T Consensus 148 ~~~-----FP~i~~ 156 (170)
T 4XCP_A 148 GKQ-----FPFLAK 156 (170)
T ss_dssp HHH-----CHHHHH
T ss_pred HHH-----ChhHHH
No 133
>PF05823.16 ; Gp-FAR-1 ; Nematode fatty acid retinoid binding protein (Gp-FAR-1)
Probab=25.54 E-value=3.8e+02 Score=23.72 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
+.++.....+.+-+..|+|+..+|+.+-++.+.++. ...-.+.......+.+.+.++-+..+.+...-++.+
T Consensus 55 ~k~~~~~~~~~~k~~~Ls~eak~F~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~Ls~~~k~~l 126 (149)
T A0A8R1DHM6_CAE 55 AKAEKLYAKLQKKVDGLSAEPKAFIQGLILAGRGLH--------AQAVSGEKIDKATVKSLIETQVKAFKELPAAAQTEL 126 (149)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--------HhhhcCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred hhc
Q FD01850236_028 136 SQN 138 (333)
Q Consensus 136 ~~~ 138 (333)
.+.
T Consensus 127 ~~~ 129 (149)
T A0A8R1DHM6_CAE 127 KTT 129 (149)
T ss_pred HHH
No 134
>PF12959.11 ; DUF3848 ; Protein of unknown function (DUF3848)
Probab=25.48 E-value=1.9e+02 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHh
Q FD01850236_028 151 RERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMH 191 (333)
Q Consensus 151 R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH 191 (333)
|++|++||+.-...+....+++|+..-+.++-.|..+.-++
T Consensus 2 ~~~l~~ki~~E~~~f~~~l~~~~~eei~~~a~eI~~~~~i~ 42 (91)
T R6MYD6_9FIRM/1 2 RSLLYERASAEKMEFCDELRKKPSEYVMEMAYQHTIYDEYL 42 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHH
No 135
>PF07638.15 ; Sigma70_ECF ; ECF sigma factor
Probab=25.33 E-value=4e+02 Score=22.35 Aligned_cols=114 Identities=7% Similarity=-0.062 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHHHHCCCCCcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYHQLNPEKKKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLY 81 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~ 81 (333)
+...+...+..+++.-......+.+++.+............+.++. . ......-......+-+.+..|++.++..+.
T Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 143 (183)
T Q7UJC0_RHOBA/2 66 VDWQGKTHFFAIGATVMRRILVDHARRTQAQKRGGGWIRRQLDDEV--TFLLDQDDDVVALDELLLQLASLSPRQARVVE 143 (183)
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceecccccc--ccccCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HCH---HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 82 ENR---TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 82 ~~~---~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
.+| .....+. ...+...+.+.....+-.+.+++.|++
T Consensus 144 l~~~~g~s~~eiA--------~~lg~s~~~v~~~~~r~~~~l~~~l~~ 183 (183)
T Q7UJC0_RHOBA/2 144 LRFFGGLGMKEIA--------AELNLGLRTVEKEWAMARAWMRRELRD 183 (183)
T ss_pred HHhhCCCCHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHhcC
No 136
>7PP2_A Exocyst subunit Exo70 family protein; Complex, Zinc-finger fold, Exocyst, plant-pathogen interactions, PLANT PROTEIN; 2.69A {Oryza sativa}
Probab=25.09 E-value=6.3e+02 Score=28.08 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCHHHH----------
Q FD01850236_028 79 LLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYK-KTYSQNSGRISGEEF---------- 147 (333)
Q Consensus 79 fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~-~~~~~~~G~l~~~~F---------- 147 (333)
||+.|+.-|...+ ..+ ....-.....++...+.+++-...|. ..+.+-...|.....
T Consensus 434 FllNN~~yI~~~l--------~~s----~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~~~~~L~~~~~~~~~~~~~~~ 501 (606)
T 7PP2_A 434 FSMNNLLYIVQKV--------RDS----ELGKILGDHWVKRRNGKIRQYSKSYLRISWMKVLSFLKDDGHGSGSGSSSGS 501 (606)
T ss_dssp HHHHHHHHHHHHH--------HTS----THHHHHCHHHHHHHHHHHHHHHHHHHHHHSSSTTTSSCC-------------
T ss_pred hHhchHHHHHHHh--------ccc----hHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHH-----
Q FD01850236_028 148 -------FGQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKL----- 214 (333)
Q Consensus 148 -------~a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~----- 214 (333)
-...+..|+.....+..+.+..-... +++.||+.|.-.-+..|. |.|..-+++-.+.
T Consensus 502 ~~~~~~~r~~iKekf~~Fn~~fee~~~~q~~~~VpD~~LR~~Lr~~i~~~v~----------p~Y~~F~~~~~~~~~~~k 571 (606)
T 7PP2_A 502 GSGHSSSRMSIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVI----------PAYRAFLGRYGSQVDGGR 571 (606)
T ss_dssp --------------CCCCHHHHHHHHHHHTTSBCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHCC-------
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhceecCCHHHHHHHHHHHHHhhH----------HHHHHHHHHHhhhccCCC
Q ss_pred --HHHHhh
Q FD01850236_028 215 --MKVMRT 220 (333)
Q Consensus 215 --ak~~k~ 220 (333)
.||+|+
T Consensus 572 ~~~Kyiky 579 (606)
T 7PP2_A 572 NSGKYIKY 579 (606)
T ss_dssp -----CCC
T ss_pred CCCccccC
No 137
>8Q84_X DASH complex subunit DAD1; Kinetochore, microtubule, error correction, chromosome segregation, CELL CYCLE;{Saccharomyces cerevisiae}
Probab=24.97 E-value=3.9e+02 Score=23.25 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHh
Q FD01850236_028 143 SGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQ 195 (333)
Q Consensus 143 ~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~ 195 (333)
.+..|-.+|.+|+.++-..|..+....-.|...-.==...|=.-.++-|-|..
T Consensus 16 ~~s~Fe~ER~~Li~eIa~~le~vl~nln~LNRnLE~v~~VG~eF~~va~LW~~ 68 (94)
T 8Q84_X 16 TDKYFIEQRNIVLQEINETMNSILNGLNGLNISLESSIAVGREFQSVSDLWKT 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhccchHHHHHHHHH
No 138
>8HKC_E RNA polymerase sigma factor RpoH; transcription, RNA polymerase, sigma factor, heat shock response, TRANSCRIPTION-DNA complex;{Escherichia coli K-12}
Probab=24.96 E-value=7.1e+02 Score=23.85 Aligned_cols=114 Identities=9% Similarity=0.045 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHH--------------HHCCCC-CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHH
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYH--------------QLNPEK-KKKPGSILVVADPLSRS-PEKIAQIQTARDKID 66 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~--------------~LN~hl-~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~ 66 (333)
....+.+++...+ ..+.+...... .-+.+. .......+.-.++.... ..+.....+....+.
T Consensus 149 ~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 226 (284)
T 8HKC_E 149 FNQDEVEMVAREL--GVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLT 226 (284)
T ss_pred CChhHHHHHHHHh--CCCHHHHHHHHHHHhhccccccCCCCCCCCCCCCccchhccCCCCChhhcccCCcHHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHCHH------HHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 67 KALEPLTNEEAKLLYENRT------PIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 67 ~~l~~Ls~~ea~fl~~~~~------~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
++++.|++.+++.+.-+|. .+..+. ..-+...........+-++.+++.|++
T Consensus 227 ~~l~~L~~~er~il~l~~~~~~~~~t~~eIA--------~~lgis~~~v~~~~~ral~kLr~~l~~ 284 (284)
T 8HKC_E 227 DAMQGLDERSQDIIRARWLDEDNKSTLQELA--------DRYGVSAERVRQLEKNAMKKLRAAIEA 284 (284)
T ss_pred HHHccCCHHHHHHHHHhccCCCCCccHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHhC
No 139
>7Y5E_q6 PsbQ'; complex, PHOTOSYNTHESIS; HET: CLA, LHG, OEX, BGC, PQN, SF4, PEB, PUB, LMG, PHO, DGD, BCR, ZEX, GOL, MEN, CYC, BCT, 3XQ, HEM, PL9; 3.3A {Porphyridium purpureum}
Probab=24.84 E-value=9.6e+02 Score=23.27 Aligned_cols=109 Identities=9% Similarity=0.077 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhcccc-ccchhHHHHHHHHHHH------HHHHH
Q FD01850236_028 47 PLSRSPEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDA-LGQSGDIFGYIKDAGG------GYYEE 119 (333)
Q Consensus 47 P~~~~~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~-~~~~s~~~G~~~~~~~------~~l~~ 119 (333)
|......+...++.....+.+.-..|.+=+...=.+.|+-+..++ -. .+.-...+-.++.... +..+.
T Consensus 88 ~~~y~~~~~~~i~~~~~~l~~~~~rL~~l~~~I~~k~W~~Vr~~L-----r~~l~~Lr~dm~~l~~~~~~~~~k~~a~~l 162 (205)
T 7Y5E_q6 88 EILYKPLNDEDLQFHKNVLEKSRGELDRTSEQIARKSWDDMRGVI-----RNQMYNMRHSQLRLIESVESAEKQKAAKKN 162 (205)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHhcHHHHHhhcHHHHHHHH-----HHhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 120 INKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 120 I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
+++.++.|+++.+....+. ...+....+.+...||.-|..+
T Consensus 163 ~k~~~~~l~~lD~Aa~~Kd-----~~~a~~~~~~a~~~ld~fl~~v 203 (205)
T 7Y5E_q6 163 YNDLKKSLEEMDLAARNKK-----QEDARKFRASALKAFDSFTTSV 203 (205)
T ss_pred HHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHhh
No 140
>PF10191.13 ; COG7 ; Golgi complex component 7 (COG7)
Probab=24.82 E-value=1.4e+03 Score=25.31 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
......|+...+.++..+..+..+....+.+--.-++.+- .....-..-+..........-..+.+.+++|++++
T Consensus 38 ~~l~~~L~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~-----~~~~~L~~~i~~l~~~~~~~~~~~~~~~~~l~~l~ 112 (730)
T Q7QA49_ANOGA/2 38 SSLVSKMQLYVQQINVALEQTGGQVLKNIPKVISDANMLQ-----IESGLLKQRMNQVQREIAHLQTETGDCMVSLERLD 112 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKS 211 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~v 211 (333)
+.. .++..-.-.-+.-.-+..+-..+..++... ++..+.+.+.-=.+++.. -.++|.+....+.+
T Consensus 113 ~~k-----~rl~~~~~~l~~~~~~~~~~~~l~~~l~~~----~~~~~~~~l~~l~~~~~~------l~~~~~~~~~~~~l 177 (730)
T Q7QA49_ANOGA/2 113 DIK-----QRLQSSKQCLQEADGWGKLAGELDDLLEKS----DIDASSGKLLSLQKSLAA------QVGLHGHSERENLV 177 (730)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHH------hcCCCCHHHHHHHH
Q ss_pred HHHHHHHh
Q FD01850236_028 212 AKLMKVMR 219 (333)
Q Consensus 212 ak~ak~~k 219 (333)
.+.-..++
T Consensus 178 ~~~~~~l~ 185 (730)
T Q7QA49_ANOGA/2 178 EYFKNRLE 185 (730)
T ss_pred HHHHHHHH
No 141
>6AR6_A Toxin B; TOXIN-PROTEIN BINDING complex; 9.0A {Clostridioides difficile}
Probab=24.79 E-value=1e+02 Score=39.76 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHHH-----HHhhcceeeeEeeccchHH
Q FD01850236_028 161 ILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLMK-----VMRTTGYVGIGLDFSSYTT 235 (333)
Q Consensus 161 ~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~ak-----~~k~gGyvgi~L~~~~s~~ 235 (333)
.+..++...-.-...+.|..+|.+.+=.-+=+--.....++-.+.+-+....+..+ .-+..|.+|++|+.++-..
T Consensus 961 ~iq~li~~~~~~~~~~~l~~alk~~~y~~~~q~~~g~~~D~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 1040 (2067)
T 6AR6_A 961 FIQSLIEYNSSKESLSNLSVAMKVQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGA 1040 (2067)
T ss_pred HHHHHHHHhccccCcccHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhchhhHHHHhHhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCChhhcceeEEEeccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHH
Q FD01850236_028 236 NVYEACAKGRESECRKAAIIEYSKFGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVV 304 (333)
Q Consensus 236 ~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv 304 (333)
.|+|-..+ ..+.++..-.+.-+-.+.+++-++++..++.+.+.++. -.+|| |-+|.++.+-+++
T Consensus 1041 di~eL~~a-~~~~~r~~~~tql~f~~~~l~~~~~s~~a~~~g~aa~~-g~~~v---~l~Gl~iG~~al~ 1104 (2067)
T 6AR6_A 1041 AIKELSET-SDPLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGF-SILLV---PLAGISAGIPSLV 1104 (2067)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHH
No 142
>PF20336.2 ; DUF6631 ; Family of unknown function (DUF6631)
Probab=24.73 E-value=8.3e+02 Score=22.45 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCChHHHHHHHHHCCCC-CcCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHCHHH
Q FD01850236_028 18 NPPSGVKELYHQLNPEK-KKKPGSILVVADPLSRSPEKIAQIQTARDKIDKALEPLT----------NEEAKLLYENRTP 86 (333)
Q Consensus 18 ~~~~~~~~~F~~LN~hl-~v~pGqivIl~dP~~~~~~ee~~L~~~A~~v~~~l~~Ls----------~~ea~fl~~~~~~ 86 (333)
...++..+-++.|.+.. .-..|+-|.|.+-. -.+...+...++.+-..|..+. +.-.+.+.+|.+.
T Consensus 6 ~~~~~~~~~L~iL~p~~~v~l~g~~V~Vrel~---~~e~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~ll~~~~~~ 82 (157)
T L7P7M5_9CAUD/8 6 PADSAPDDSLSVLFPDRQLAVGGVEVTVRELS---FSEQLRHNHLLAPLADALAAVPPEQLDGPESINVIFDALARHADA 82 (157)
T ss_pred CCCCCCcchhhhhcCCcEEEECCEEEEEEeee---HHHHHHHHHHHHHHHHHHHcCCcccCCCCccHHHHHHHHHHcHHH
Q ss_pred HHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q FD01850236_028 87 IDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQR 151 (333)
Q Consensus 87 l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R 151 (333)
+-.++ ...++--...++++ ...++.+++...+.-+ ..||.+|
T Consensus 83 ~~~ll---------------a~~t~~~~e~l~~l--~~~e~~~L~~av~evN------~dFF~~~ 124 (157)
T L7P7M5_9CAUD/8 83 LRELL---------------AISCGQSVDWVDAL--PADDGEALVLTWWTVN------NGFFVRR 124 (157)
T ss_pred HHHHH---------------HHHhCCCHHHHHcC--CHHHHHHHHHHHHHHc------chhHHHh
No 143
>3F1B_A TetR-like transcriptional regulator; APC5888, TetR, Rhodococcus sp. RHA1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: SO4, MSE; 2.4A {Rhodococcus}
Probab=24.71 E-value=3.1e+02 Score=22.87 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 149 GQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 149 a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
..|++++ +..+.-+.++++.--.-.+|-+..|+|..++.|||.
T Consensus 14 ~~~~~i~---~aa~~l~~~~g~~~~t~~~ia~~agvs~~t~y~~F~ 56 (203)
T 3F1B_A 14 VREQQML---DAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHH---HHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHH---HHHHHHHHHcCCccCCHHHHHHHhCCCHHHHHHHcC
No 144
>7Y9N_A Spike protein S2',5HB-H2; 5HB, VIRUS PROTEIN/INHIBITOR, VIRUS PROTEIN-INHIBITOR complex; 1.885A {Severe acute respiratory syndrome coronavirus 2}
Probab=24.65 E-value=1.2e+03 Score=24.28 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..+++.|.+.++.+++.+-+|.+=.-..+.+|..+|.+-. ..+=..+-.+-......|..|.+...+=-...
T Consensus 69 ~~rLd~Leavvq~LNdS~IdLkeL~~y~L~~NQk~iA~sF--------N~A~~~i~~~~~t~a~AL~kiQ~VVN~~~~aL 140 (250)
T 7Y9N_A 69 QKEIDRLNEVAKNLNESLIDLQELGGSGGSENQKLIANQF--------NSAIGKIQDSLSSTASALGKLQDVVNQNAQAL 140 (250)
T ss_dssp HHHHHHHHHHHHHGGGGCC------------CHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHhcccchHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHH---HHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFF---GQRERLFKQLDGI 161 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~---a~R~~Lf~~LD~~ 161 (333)
......- ..=.+..|- .-=+.++.|||..
T Consensus 141 ~~L~~qL-~~nfG~n~~aIsssi~dI~~rLd~l 172 (250)
T 7Y9N_A 141 NTLVKQL-SGGRGGDISGINASVVNIQKEIDRL 172 (250)
T ss_dssp HHHHHHH-CC----TTTTCCCCCCCCHHHHHHH
T ss_pred HHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHH
No 145
>7WKK_H IL4I1 protein; nuclear pore complex, inner ring, Nup205, Nup93, Nup188, Nup155, NDC1, Aladin, STRUCTURAL PROTEIN; 4.2A {Xenopus laevis}
Probab=24.55 E-value=1.1e+03 Score=27.11 Aligned_cols=102 Identities=10% Similarity=0.159 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 53 EKIAQIQTARDKIDKALEPLTNEEA----KLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQ 128 (333)
Q Consensus 53 ~ee~~L~~~A~~v~~~l~~Ls~~ea----~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie 128 (333)
++++.+....+++.+.|..|+.+.. .....|-|.=..-+ .-++..+..||+++.+.|++|-
T Consensus 416 ~eLd~IlsqQkELed~Lt~lE~svk~qsgs~~lq~~deErE~t---------------YkLAEnIdaqLKrMaqDLkdII 480 (547)
T 7WKK_H 416 QELDFILSQQKELEDLLTPLEESVKEQSGTIYLQHADEEREKT---------------YKLAENIDAQLKRMAQDLKEVI 480 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCTT---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchHHHHHHHhhhHHHHHHhhcceeccCchHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q FD01850236_028 129 ELY-------------KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQ 169 (333)
Q Consensus 129 ~ly-------------~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~ 169 (333)
+-. ++..+-.++||..-+...||..+++|==..+.++....
T Consensus 481 EhLNt~~~padtsdPLqQIcKILNAHmdSLQWIDQnsalLQrKVEevtkv~E~r 534 (547)
T 7WKK_H 481 EHLNTSAGPGDASNPLQQICKILNAHMDSLQWIDQNSALLQRKVEQVTKECESR 534 (547)
T ss_dssp HHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 146
>7U1Z_B Toxin A; TcdA, Toxin A, TOXIN; HET: SO4; 3.18A {Clostridioides difficile}
Probab=24.30 E-value=1e+02 Score=38.74 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred hHHHHHHHHHHHHHH------------HhhcceeeeEeeccchHHHHHHHHHcCChhhcceeEEEeccchhhHHHHHHHH
Q FD01850236_028 203 GYASYIEKSAKLMKV------------MRTTGYVGIGLDFSSYTTNVYEACAKGRESECRKAAIIEYSKFGGKQTASAFG 270 (333)
Q Consensus 203 gya~~i~~vak~ak~------------~k~gGyvgi~L~~~~s~~~I~eAC~~Gre~~C~k~~~~E~g~f~G~~~GG~~G 270 (333)
+....+.++++..+. ++.++.+|+.|++++-...|+|-..+ ..+.++.+--+.-+=-+.+++-++++
T Consensus 160 g~~~d~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~el~~a-~~~~~~~~~~tql~fd~~~~~~~~~~ 238 (1640)
T 7U1Z_B 160 NTIYDSIQLVNLISNAVNDTINVLPTITEGIPIVSTILDGINLGAAIKELLDE-HDPLLKKELEAKVGVLAINMSLSIAA 238 (1640)
T ss_dssp GGCCCHHHHHHHHHHHHTSCCCCSCCSSTTCCSCCCEETTEECHHHHHHHHHH-CCHHHHHHCCCCCCEEECCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHhccccchHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCchhHHHHHHH
Q FD01850236_028 271 GIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVV 304 (333)
Q Consensus 271 g~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv 304 (333)
-.++.+.+.++. -++|| |-+|.++.+-+++
T Consensus 239 ~~a~~~ga~~~~-~~l~v---~~agl~ig~~~l~ 268 (1640)
T 7U1Z_B 239 TVASIVGIGAEV-TIFLL---PIAGISAGIPSLV 268 (1640)
T ss_dssp HHHHHHHHHHHH-TTCCC---BCTTTTTCCCEEE
T ss_pred HHHHHHHHHHHH-HHHHH---HHHHHHHhHHHHH
No 147
>PF14643.10 ; DUF4455 ; Domain of unknown function (DUF4455)
Probab=24.28 E-value=1.3e+03 Score=24.68 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
......|...-..+...|.....+-.+.....-.-|+.++ -..--+..-......++.+...|+.|+..|
T Consensus 359 d~h~~~l~~~~~~~~~~l~~~~~~~~~~~~~~E~~L~~~~----------d~lRq~~~e~~L~~~l~~~~~~Ld~I~~~y 428 (471)
T G1PVP3_MYOLU/1 359 EAHQDMLSAQELQLDKRMEQQRRKHSLQCQAQEAYLDQLL----------DQLRQLSTEGSLKFHLEKAKDYLKSMKGRY 428 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFS 166 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~ 166 (333)
.+.+... .-.-..|-..-...+......|.+++
T Consensus 429 ~~~~~~~--~~~~~~yp~~v~~e~~~~~~~l~~~f 461 (471)
T G1PVP3_MYOLU/1 429 EQFHVIL--TREVMEYSAIILNELNSYSSNLSKYF 461 (471)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
No 148
>2PRS_A High-affinity zinc uptake system protein znuA; protein consists of two (beta/alfa)4 domains, METAL TRANSPORT; 1.7A {Escherichia coli} SCOP: c.92.2.0
Probab=24.24 E-value=6e+02 Score=25.00 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKS 188 (333)
..+....+.|.+.|.++.-.+...|.++ ...|..+=+.|..++...+..+-.+.+ .-|.+.-+-+.+||..-.
T Consensus 123 ~~~~~~~~~Ia~~L~~~~P~~~~~~~~n-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~gl~~~~ 197 (284)
T 2PRS_A 123 EIARATAVAIHGKLVELMPQSRAKLDAN-----LKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLG 197 (284)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCE
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHH-----HHHHHHHHHHHHHHHHHhccccCCCeeEEeehHHHHHHHHhCCCcce
Q ss_pred HHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHH
Q FD01850236_028 189 IMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYE 239 (333)
Q Consensus 189 ivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~e 239 (333)
++. .. ++-....+.+++..+.+|..+.--|-.+...+...+..
T Consensus 198 ~~~------~~--~~~~~s~~~l~~l~~~~~~~~v~~i~~~~~~~~~~~~~ 240 (284)
T 2PRS_A 198 HFT------VN--PEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVES 240 (284)
T ss_dssp EEE------SS--TTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHH
T ss_pred eee------cC--CCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCHHHHHH
No 149
>PF09325.14 ; Vps5 ; Vps5 C terminal like
Probab=24.21 E-value=8.1e+02 Score=22.15 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHH----HHHHHHHHHHH
Q FD01850236_028 47 PLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIK----DAGGGYYEEIN 121 (333)
Q Consensus 47 P~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~----~~~~~~l~~I~ 121 (333)
+.... ..+-..+......+...+..|...-........++..... ..+........ ......+..+.
T Consensus 16 ~~~~~~d~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~l~~~l~~l~~~e~~~~l~~~~~~~~ 87 (235)
T Q5B786_EMENI/2 16 GKFIEHDDWFHDRKIYLDALENQLKSLMKAIDTVVAQRKGLSEAAG--------EFSTSIQSLAAVELSPLLSGPLYGLS 87 (235)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhccCHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 122 KVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 122 ~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
+.++.+...+.+..... ...|...=+.+...+...-.-+-++.--+.+|...++.|
T Consensus 88 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~l 143 (235)
T Q5B786_EMENI/2 88 DLQLRIKELYDRQAQQD-----VLTLGITIDEYLRLIGSVKTAFSQRQKAYHSWHAAESEL 143 (235)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>4H0F_B Laminin-binding surface protein; Adhesin, Human Laminin, CELL ADHESION; 2.4A {Streptococcus agalactiae} SCOP: c.92.2.0
Probab=24.13 E-value=3.8e+02 Score=26.03 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKS 188 (333)
..+.+..+.|.+.|.++.-.+...|.+. ...|..+-+.|..++...+.++-.+.+ .-|.+.-+=+.+|+....
T Consensus 106 ~~~~~~~~~i~~~L~~~~p~~~~~~~~n-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~h~~~~y~~~~~gl~v~~ 180 (264)
T 4H0F_B 106 VLAGEEAVNIAKELGHLDPKHKDSYTKK-----AKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLG 180 (264)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTCSCCEEEEEESCCHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhhChhcHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccCCCeEEeecchHHHHHHHhCCEEEE
Q ss_pred HH-hccHhhCCccCchHHHHHHHHHHHHH
Q FD01850236_028 189 IM-HKWDQTGVRDIEGYASYIEKSAKLMK 216 (333)
Q Consensus 189 iv-H~W~~~g~g~Ipgya~~i~~vak~ak 216 (333)
++ . ..+.+--.++++.+.+..|
T Consensus 181 ~~~~------~~~~~~s~~~l~~l~~~~~ 203 (264)
T 4H0F_B 181 ISGI------SPEQEPSPRQLKEIQDFVK 203 (264)
T ss_dssp EECS------STTSCCCHHHHHHHHHHHH
T ss_pred EecC------CCCCCCCHHHHHHHHHHHH
No 151
>1OR7_A RNA polymerase sigma-E factor; regulation, DNA-BINDING, TRANSMEMBRANE, TRANSCRIPTION; 2.0A {Escherichia coli} SCOP: l.1.1.1, a.177.1.1, a.4.13.2
Probab=23.94 E-value=6.7e+02 Score=21.16 Aligned_cols=118 Identities=9% Similarity=0.032 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred CCCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCH
Q FD01850236_028 2 VPELTTPKSYECELMVNPPSGVKELYHQLNPEK------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTN 74 (333)
Q Consensus 2 v~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~ 74 (333)
++.-.+...+..+|+.-........+++.+... ...+...-...++.... ........+....+...+..|++
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 143 (194)
T 1OR7_A 64 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPE 143 (194)
T ss_dssp GGGCCSSSCHHHHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCH
T ss_pred hhcCCCccchHHHHHHHHHHHHHHHHHHcCCCCCCcchhhHHhhhccCCCccccCCChhHHhhHHHHHHHHHHHHHcCCH
Q ss_pred HHHHHHHHC-HH--HHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYEN-RT--PIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 75 ~ea~fl~~~-~~--~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
.+++.+..+ .+ -...+. ..-+...........+-.+.+++.|++.
T Consensus 144 ~~~~i~~~~~~~~~s~~eia--------~~l~~s~~~v~~~~~r~~~~l~~~l~~~ 191 (194)
T 1OR7_A 144 DLRMAITLRELDGLSYEEIA--------AIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp HHHHHHHHHHTTCCCHHHHH--------HHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhhcCCCHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHH
No 152
>1AVO_B 11S REGULATOR; PROTEASOME ACTIVATOR, CELL ADHESION, INTERFERON INDUCTION; 2.8A {Homo sapiens}
Probab=23.75 E-value=6e+02 Score=22.34 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERL 154 (333)
Q Consensus 75 ~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~L 154 (333)
.+...+.+..+.+...+ .---.-+-..++..-..-+++.+.|.+++..-.+.+..- ..||.+|..+
T Consensus 17 ~e~~~l~~~~~~l~~Wi--------~l~iP~~edgnnfgv~vq~~v~~~l~~~~~~~~~~~~~~------~~Y~~~Ra~l 82 (140)
T 1AVO_B 17 PEIKDVIEQLNLVTTWL--------QLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQI------SKYFSERGDA 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HcCCCchhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHH
Q FD01850236_028 155 FKQL 158 (333)
Q Consensus 155 f~~L 158 (333)
..++
T Consensus 83 ~~k~ 86 (140)
T 1AVO_B 83 VTKA 86 (140)
T ss_dssp HHHH
T ss_pred HHHH
No 153
>2HWG_B Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS, TRANSFERASE; HET: MSE, NEP, OXL; 2.7A {Escherichia coli}
Probab=23.70 E-value=1.1e+03 Score=25.84 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CcEEEecCC---------CCCC-HHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHCHHHHHHHHhhhcccccc
Q FD01850236_028 39 GSILVVADP---------LSRS-PEKIAQIQTARDKIDKALEPLT--------NEEAKLLYENRTPIDMFSSNIYSDALG 100 (333)
Q Consensus 39 GqivIl~dP---------~~~~-~~ee~~L~~~A~~v~~~l~~Ls--------~~ea~fl~~~~~~l~~~~~~~~~d~~~ 100 (333)
|.+.++.++ ...+ ..|.+.|..+..++.+.|..+. +++++.+.-|..+|+.--
T Consensus 14 G~~~~~~~~~~~~~~~~~~~~~~~~E~~rl~~A~~~~~~~l~~~~~~~~~~~~~~~~~I~~a~~~il~D~~--------- 84 (575)
T 2HWG_B 14 GKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEE--------- 84 (575)
T ss_dssp EEEEECCCCCCCCCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTCSSHHHHHHHHHHHHTCHH---------
T ss_pred EEEEEEcccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHcCHh---------
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 101 QSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK 167 (333)
Q Consensus 101 ~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r 167 (333)
...-....+.+.-...+..+++.-+-|.+.|... ...||.+|..=+..+-..+-..+.
T Consensus 85 ----~~~~i~~~I~~~~~~a~~Av~~~~~~~~~~~~~~-----~~~~~~~r~~di~d~~~~~l~~l~ 142 (575)
T 2HWG_B 85 ----LEQEIIALIKDKHMTADAAAHEVIEGQASALEEL-----DDEYLKERAADVRDIGKRLLRNIL 142 (575)
T ss_dssp ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHc
No 154
>PF12896.11 ; ANAPC4 ; Anaphase-promoting complex, cyclosome, subunit 4
Probab=23.60 E-value=9.2e+02 Score=22.61 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q FD01850236_028 73 TNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRE 152 (333)
Q Consensus 73 s~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~ 152 (333)
...+-..+.+++..+..++ .|....+......|....+...+-++.+++.+.+. .. +.+.+|.-=--+=
T Consensus 13 ~~~~l~~la~~~~~l~~ll--------~y~~~~~~~~~~~w~~~~~~~~~~~~~l~~~l~~~--~~-~~~~~~~~~L~~l 81 (205)
T B6K1S4_SCHJY/2 13 SPQHLVEVATLSTRMQYLV--------KYISETSDAMYEEYKNFQSTQQKVTNMFETINSKN--PD-RVHLSPQAELYQF 81 (205)
T ss_pred CcHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CC-CCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 153 RLFKQLDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 153 ~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
-+....+..|..|+-..++-+.-.+..+..
T Consensus 82 l~tG~~s~~l~~fL~~~l~e~~lkr~~~~~ 111 (205)
T B6K1S4_SCHJY/2 82 YMTGIPSWFLREWLADRLADRGLKSWEKKL 111 (205)
T ss_pred HHHCCCCHHHHHHHHHhhhHHhHHHHHHHH
No 155
>PF04099.16 ; Sybindin ; Sybindin-like family
Probab=23.58 E-value=2.3e+02 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHHHH
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSG------RISGEEFFGQRERLFKQL 158 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G------~l~~~~F~a~R~~Lf~~L 158 (333)
+.+++.|++|.++|.+...++ - .+.++.|-.+.+++++++
T Consensus 87 ~~i~~~l~~i~~~y~~~~~~N-Pf~~~~~~i~~~~F~~~~~~~~~~~ 132 (132)
T TRS23_SCHPO/1- 87 TNARLQLQKFYELYSDYVLKN-PFYTLEMPIKCQLFDEQLKRYIDSH 132 (132)
T ss_pred cCHHHHHHHHHHHHHHHHhhC-CCCCCCCCcCCHHHHHHHHHHHhcC
No 156
>7RDH_G De novo designed protein H3mb; de novo design, mini protein, HA stem binder, VIRAL PROTEIN, VIRAL PROTEIN-DE NOVO PROTEIN complex; HET: BMA, NAG; 2.75A {Influenza A virus (strain A/Hong Kong/1/1968 H3N2)}
Probab=23.57 E-value=5.5e+02 Score=20.93 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH-------------HHHHHHHHHHHHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFF-------------GQRERLFKQLDGIL 162 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~-------------a~R~~Lf~~LD~~L 162 (333)
+..++|-+-++=.|++||++.++ |.-.+.+|. .+-++-+.+|+.+|
T Consensus 18 sggsqhekflewmlrkieeaikr------gnkisaeflinlaknfihvlgddeirrrlerlerql 76 (77)
T 7RDH_G 18 SGGSQHEKFLEWMLRKIEEAIKR------GNKISAEFLINLAKNFIHVLGDDEIRRRLERLERQL 76 (77)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHHHHHHh------CCcccHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
No 157
>3FAV_B 6 kDa early secretory antigenic target; Complex, Operon structure, Four-helical-bundle, Coiled-coil, WXG-motif, Mycobacterium tuberculosis, secreted, secretion system, adaptor protein, proposed virulent factor; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1
Probab=23.39 E-value=4.8e+02 Score=19.30 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKT 134 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~ 134 (333)
..|...++.+......+......+-...-.+-..+- +.+..........|...++.+.+.|.++.....+.
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 78 (94)
T 3FAV_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG--------GSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGT--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>1RP3_C RNA polymerase sigma factor SIGMA-28 (FliA); TRANSCRIPTION, SIGMA FACTOR; 2.3A {Aquifex aeolicus} SCOP: a.4.13.1, a.177.1.1, a.4.13.2
Probab=23.33 E-value=8.1e+02 Score=21.86 Aligned_cols=108 Identities=10% Similarity=-0.107 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC-------CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCH
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYHQLNPEK-------KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTN 74 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl-------~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~ 74 (333)
.+..+.+++...+ ..+.........-.... .....+.-....+.... ..+...-.+....+..++..|++
T Consensus 113 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~ 190 (239)
T 1RP3_C 113 GREPTDEEVAKEL--GISTEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSSTNVEEEVIKRELTEKVKEAVSKLPE 190 (239)
T ss_dssp SSCCCHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred CCCCCHHHHHHHh--CCCHHHHHHHHHHhccCCcccchhhcccccccchhhCCCCCChHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred HHHHHHHHCH------HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 75 EEAKLLYENR------TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 75 ~ea~fl~~~~------~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
.+++.+..+| +.|...+ |.....+.+.++.+.+.|++.
T Consensus 191 ~~~~il~l~~~~~~~~~eiA~~l---------------g~s~~~v~~~~~ra~~~l~~~ 234 (239)
T 1RP3_C 191 REKLVIQLIFYEELPAKEVAKIL---------------ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp HHHHHHCCCCCTTCCHHHHHHHH---------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHh---------------CCCHHHHHHHHHHHHHHHHHH
No 159
>2LEM_A Apolipoprotein A-I; LIPID TRANSPORT; NMR {Mus musculus}
Probab=23.07 E-value=9.8e+02 Score=22.74 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
..|......++..|.+..++-.+.+.+|.+.+..-+ ...+.-.-..+.++++++...|...-+-.++.+
T Consensus 83 ~~l~~~~~~l~~~l~p~~~el~~~l~~~ve~l~~~l-----------~p~~~el~~~l~~~~~~l~~~l~~~~~~l~~~l 151 (216)
T 2LEM_A 83 QEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKA-----------SPQGAELQESARQKLQELQGRLSPVAEEFRDRM 151 (216)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHT-----------SCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 136 SQNSGRISGEEFFGQRERLFKQLDGILNKFSKE 168 (333)
Q Consensus 136 ~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~ 168 (333)
..+ -++|..+=..+...|...|...+..
T Consensus 152 ~~~-----~~~l~~~l~p~~~~l~~~l~~~~e~ 179 (216)
T 2LEM_A 152 RTH-----VDSLRTQLAPHSEQMRESLAQRLAE 179 (216)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
No 160
>8FEF_C MCE-family protein MCE1c; Membrane protein complex, ABC transporter, Virulence factor, Lipid transport, MEMBRANE PROTEIN; HET: UNL; 2.71A {Mycolicibacterium smegmatis MC2 155}
Probab=22.90 E-value=1.7e+03 Score=25.42 Aligned_cols=175 Identities=8% Similarity=0.073 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CcCCCcEEEecCCCCCC--HHHHHHHHHHH-----HHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh-hcc----ccccch
Q FD01850236_028 35 KKKPGSILVVADPLSRS--PEKIAQIQTAR-----DKIDKALEPLTNEEAKLLYENRTPIDMFSSN-IYS----DALGQS 102 (333)
Q Consensus 35 ~v~pGqivIl~dP~~~~--~~ee~~L~~~A-----~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~-~~~----d~~~~~ 102 (333)
.+.+|+.|-+....... ......+...+ +++.+.|+.|+..-.+..-+-..+|+.+..- ... +....-
T Consensus 117 ~L~~G~~IP~~~T~~p~~i~dal~~lt~~~~~~d~~~l~~~L~~Ls~tl~~~~~~L~~~L~~v~~ls~tl~~~~~~L~~L 196 (524)
T 8FEF_C 117 TLKPRGVLPVGQTSAPYQIYDAFLDVTRNAAGWDTQAVRQSLNVLSETVDQTSPHLSAALDGVARFSETIGKRDEDVKKL 196 (524)
T ss_dssp BCCTTCEECGGGEECCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhHhhccHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 103 GDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 103 s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
-.....++.....+-++|.+.+.+++.+..+.-.+. .+=+.++..+......+..-.-..++-..+=+.|
T Consensus 197 L~~a~~v~~~L~~~~~ql~~ll~n~~~ll~~l~~~~----------~~l~~lL~~l~~~s~ql~~li~dn~~L~~~L~~L 266 (524)
T 8FEF_C 197 LASANKVATVLGDRSTQVNQLLVNAQTLLAAVNERG----------RSVSLLLERVSSVSRQVEGFVDENPNLNHVLEQL 266 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTH----------HHHTTHHHHHHHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Q ss_pred CCCHHHHHhccHhhC--CccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 183 GLSTKSIMHKWDQTG--VRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 183 GlStKSivH~W~~~g--~g~Ipgya~~i~~vak~ak~~k 219 (333)
.--+..+..+.+..- -..+..|...+..+..-..++|
T Consensus 267 ~~v~~~L~~~~~dL~~~L~~l~~~~~~L~e~v~sGp~f~ 305 (524)
T 8FEF_C 267 RTVSDVLNERKQDLADILTVAGKFITSLAEALASGPYFK 305 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTSSHHHHTHHHHTTTSEE
T ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHhcChhhh
No 161
>4FHR_B Flagellar motor switch protein FliG; flagellar motor, MOTOR PROTEIN; 1.931A {Thermotoga maritima} SCOP: a.118.14.1, l.1.1.1
Probab=22.66 E-value=1e+03 Score=22.69 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CCCCHHHHHHHhhCCCChHHHHHHHHHCCCC-CcCCCcEEEecCCCCCC-HHHHHHHHHHHHH--------------HHH
Q FD01850236_028 4 ELTTPKSYECELMVNPPSGVKELYHQLNPEK-KKKPGSILVVADPLSRS-PEKIAQIQTARDK--------------IDK 67 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl-~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~--------------v~~ 67 (333)
...++..+...|..-++....+.|..+.+.. .-.--+|.-+.+..... ..-.+.+.+.... +.+
T Consensus 13 ~~~~~~~~a~~L~~l~~~~~a~vl~~l~~e~~~~ll~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
T 4FHR_B 13 QSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAE 92 (216)
T ss_dssp TTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHH
T ss_pred hcCCHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhchhhccccccCcHHHHHH
Q ss_pred HHhcCCHHHHHHHHH------------------------CH--HHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 68 ALEPLTNEEAKLLYE------------------------NR--TPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEIN 121 (333)
Q Consensus 68 ~l~~Ls~~ea~fl~~------------------------~~--~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~ 121 (333)
.|..+++++++.+.+ ++ +.+..++.+ -......-.....-....+.|-
T Consensus 93 il~~l~~~~~~~ll~~i~~~~p~~~~~i~~~~~~~~~l~~l~~~~l~~~l~~------~~~~~l~~~L~~~~~~~~~~vl 166 (216)
T 4FHR_B 93 IMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLRE------VDTRDLALALKGASDELKEKIF 166 (216)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTT------SCHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCHHHHHHHHHhcccHHHHhcCCHHHHHHHHhc------CCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 122 KVL-NEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNK 164 (333)
Q Consensus 122 ~~L-~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~ 164 (333)
..| .+..+.+.+.+... +.....+.-..|+.+.+++-.....
T Consensus 167 ~~lp~~~~~~i~~~l~~~-~~~~~~~~~~a~~~l~~~~~~l~~~ 209 (216)
T 4FHR_B 167 KNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEA 209 (216)
T ss_dssp TTSCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHc
No 162
>4ME9_A Transcriptional regulator, TetR family; TetR_N domain, PF00440 family, tetracyclin repressor-like, C-terminal domain fold, Structural Genomics, Joint Center for Structural Genomics; HET: MSE; 2.5A {Bacillus cereus}
Probab=22.64 E-value=2.4e+02 Score=23.09 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 158 LDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 158 LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
|+..+.-+.++++.--...+|-+..|+|.+++.|||.
T Consensus 11 ~~aa~~l~~~~g~~~~t~~~ia~~agvs~~~~y~~F~ 47 (189)
T 4ME9_A 11 FDAAMQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFE 47 (189)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHhCCChHHHHHHhc
No 163
>PF08621.14 ; RPAP1_N ; RPAP1-like, N-terminal
Probab=22.54 E-value=3.5e+02 Score=19.66 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q FD01850236_028 128 QELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQ 169 (333)
Q Consensus 128 e~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~ 169 (333)
++-+..-..+- ..++.++.-.+|+.|+.+||-.+-.++++.
T Consensus 1 ~~i~~eN~~~l-~~Ms~eei~~e~~el~~~l~p~~i~~l~~r 41 (46)
T M2RM96_CERS8/1 1 AQIDEENRRRI-ENMTEEEREQERQEILERFGPNVTETLRRA 41 (46)
T ss_pred CcHHHHHHHHH-HcCCHHHHHHHHHHHHHHHCHHHHHHHHHH
No 164
>PF10023.13 ; Aminopep ; Putative aminopeptidase
Probab=22.47 E-value=6e+02 Score=26.49 Aligned_cols=100 Identities=7% Similarity=0.053 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCChHHHHHHhCCCHHHHHh
Q FD01850236_028 113 GGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSK-EQLNLKQYEQIKQALGLSTKSIMH 191 (333)
Q Consensus 113 ~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r-~~~gl~~~~~lK~~LGlStKSivH 191 (333)
....-..|.+..++|+++|.+ + +..++-.++|+++|..+-..+..+.. .....+.+..+.+. +.--.+++
T Consensus 211 ~~~f~~~l~~~~~~L~~lY~~------~-~~~~ekl~~K~~i~~~~r~~~~~~~~~~~~~~~~y~~~~~~--~NNA~l~~ 281 (325)
T I0HMF1_RUBGI/2 211 RRAFRALVGETREALRTLYAS------D-ADEATKRARKAELMAAMRARHAALKAGEWAGYAGYDAWFDN--ANNAALGV 281 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhHHHh--cccceeHh
Q ss_pred ccHhhC-CccCchHHHHHH-HHHHHHHHHhhc
Q FD01850236_028 192 KWDQTG-VRDIEGYASYIE-KSAKLMKVMRTT 221 (333)
Q Consensus 192 ~W~~~g-~g~Ipgya~~i~-~vak~ak~~k~g 221 (333)
...=.. ...+..+-+... .+.++...||..
T Consensus 282 ~~~Y~~~~~~~~~l~~~~g~dl~~fl~~l~~l 313 (325)
T I0HMF1_RUBGI/2 282 QAAYDEWVPAFERLFEAEGADFKRFYAEVARL 313 (325)
T ss_pred HhchhcccHHHHHHHHHcCCCHHHHHHHHHHH
No 165
>1SZ9_C PCF11 protein; Pcf11, RNA polymerase II CTD interacting domain, arm repeats, TRANSCRIPTION; 2.1A {Saccharomyces cerevisiae} SCOP: a.118.9.4, l.1.1.1
Probab=22.35 E-value=7.7e+02 Score=21.28 Aligned_cols=130 Identities=8% Similarity=0.057 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHH
Q FD01850236_028 72 LTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSG----RISGEEF 147 (333)
Q Consensus 72 Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G----~l~~~~F 147 (333)
|+.+..++..+....|+.+. ..+...+...+.....|.+..+.+...+.+...+.-..+ - .+...-+
T Consensus 1 ~~~~~~~~~~~~~~~L~~l~--------~~s~~~I~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kl~~lyl~~~i~ 71 (144)
T 1SZ9_C 1 MDHDTEVIVKDFNSILEELT--------FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQ-KLYAFYALDSIC 71 (144)
T ss_dssp -CHHHHHHHHHHHHHHHTCS--------SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC--------cCCHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhcCHhh-hHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHh-----hC---CccCchHHHHHHHHHHHH
Q FD01850236_028 148 FGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQ-----TG---VRDIEGYASYIEKSAKLM 215 (333)
Q Consensus 148 ~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~-----~g---~g~Ipgya~~i~~vak~a 215 (333)
...+..+...+-..|..+........+....++... ++..|.+ .+ ...+..+.+.++.+...+
T Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~l~~W~~~~~~~~~if~~~~~~~i~~~l~~~~~~~ 142 (144)
T 1SZ9_C 72 KNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLIN-----MFKLWLNPNDTGLPLFEGSALEKIEQFLIKASAAA 142 (144)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-----HHHHHHSGGGCSSCSSCSSHHHHHHHHHHHHTCC-
T ss_pred HhCCChHHHHHHHcHHHHHHHHHHhCCHHHHHHHHH-----HHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhHhhh
No 166
>7Z36_A Endolysin,Transcription intermediary factor 1-beta,Isoform 2 of Transcription intermediary factor 1-beta; Transcription factor, TRIM family, KRAB domain, CRISPRi, TRANSCRIPTION; 2.8A {Homo sapiens}
Probab=22.35 E-value=1.3e+03 Score=23.85 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
......+++....+...+...-.+-.+.+.+..+.+..-+ ..-.-..........+.+++..+++++..
T Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~~~l-----------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 415 (482)
T 7Z36_A 347 RSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLVNDA-----------QKVTEGQQERLERQHWTMTKIQKHQEHIL 415 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
...-... -.-...+|+..++.+..+|......+
T Consensus 416 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~ 448 (482)
T 7Z36_A 416 RFASWAL-ESDNNTALLLSKKLIYFQLHRALKMI 448 (482)
T ss_dssp HHHHHHH-HCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH-hcCChHHHHHcHHHHHHHHHHHHhcc
No 167
>7XL3_F RNA polymerase sigma factor RpoS; transcription initiation, Pseudomonas aeruginosa, RNA polymerase, sigmaS, SutA, RNAP beta lobe, open beta lobe, TRANSCRIPTION; 3.13A {Pseudomonas aeruginosa PAO1}
Probab=22.31 E-value=1.1e+03 Score=23.19 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCCHHHHHHHhhCCCChHHHHHHHHHCCCC-----CcCCCcEEEe---cCCCCCC-HHHHHHHHHHHHHHHHHHhcCC
Q FD01850236_028 3 PELTTPKSYECELMVNPPSGVKELYHQLNPEK-----KKKPGSILVV---ADPLSRS-PEKIAQIQTARDKIDKALEPLT 73 (333)
Q Consensus 3 ~~~~s~~~l~~~Lf~~~~~~~~~~F~~LN~hl-----~v~pGqivIl---~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls 73 (333)
....+.+++...+ ..+........+++... .+...+---. ..+.... ..+.....+....+..++..|+
T Consensus 199 ~~~~~~~~ia~~~--~~~~~~v~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~ 276 (338)
T 7XL3_F 199 DHEPSPEEIANLL--EKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLTELT 276 (338)
T ss_dssp TCCCCSSTHHHHT--TCCHHHHHHHHHTCCCCEESSSBCSSSTTCBSGGGCBCSSSCCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHh--CCCHHHHHHHHhccccccccCccCCCCCCCchHHhhcCCCCCCHHHHHhHHHHHHHHHHHHHcCC
Q ss_pred HHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q FD01850236_028 74 NEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFF 148 (333)
Q Consensus 74 ~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~ 148 (333)
+.+++.+..+| .+. ....-...-++..++-..+.|.+.++..-+-.++.+.+. .+..+.||
T Consensus 277 ~~er~vl~~~~----gl~--------~~~~~s~~eIA~~lgis~~~v~~~~~ra~~kLr~~l~~~--~~~~~~~~ 337 (338)
T 7XL3_F 277 DKQREVVIRRF----GLR--------GHESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKN--GLSSDALF 337 (338)
T ss_dssp TTHHHHHHHHS----CCS--------SCCCCCHHHHTTTTSCCSSHHHHHHHHHHHHHHHHHHTT--TCCHHHHT
T ss_pred HHHHHHHHHHh----CCC--------CCCcccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CCChhHhc
No 168
>5Z2W_B Cell division protein FtsB; Cell division, CELL CYCLE; 3.0A {Escherichia coli}
Probab=22.30 E-value=1.3e+02 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CcCCCcEEEecCCCCCC
Q FD01850236_028 35 KKKPGSILVVADPLSRS 51 (333)
Q Consensus 35 ~v~pGqivIl~dP~~~~ 51 (333)
+++|||++++..|....
T Consensus 17 ~~~pgE~~~~~~~~~~~ 33 (35)
T 5Z2W_B 17 MTRPGETFYRLVPDASK 33 (35)
T ss_dssp CCCTTCEEEECSSSCBC
T ss_pred CCCCCCEEEEeCCchhc
No 169
>6W1S_D Mediator of RNA polymerase II transcription subunit 7; mouse mediator, complex, GENE REGULATION; 4.02A {Mus musculus}
Probab=22.18 E-value=4.4e+02 Score=24.15 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HhhCCCChHHHHHHHHHCCCC---CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHH
Q FD01850236_028 14 ELMVNPPSGVKELYHQLNPEK---KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDM 89 (333)
Q Consensus 14 ~Lf~~~~~~~~~~F~~LN~hl---~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~ 89 (333)
.||+. ..+.+..+++||..+ ++.--+.+ +.+|.... ......++......+..+..+-+.+| .+.|..
T Consensus 56 ~l~~~-~~d~~~eL~~L~~~ll~~~l~Ll~~l-~~~p~~~~~~~~~~~i~~l~~Nm~~llN~~Rp~QA------r~~L~~ 127 (157)
T 6W1S_D 56 RLHPM-QFDHKKELRKLNMSILINFLDLLDIL-IRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQA------RETLRV 127 (157)
T ss_dssp TTSCC-CSSHHHHHHHHHHHHHHHHHHHHHHH-HHSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred ccCCC-CccHHHHHHHHhHHHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Q ss_pred HHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 90 FSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 90 ~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
++ -....---.......+.++++.+.|..
T Consensus 128 ~l--------~~Qi~~r~~~~~~i~~~~~~~~~~l~~ 156 (157)
T 6W1S_D 128 MM--------EVQKRQRLETAERFQKHLERVIEMIQN 156 (157)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHc
No 170
>8AX9_A Maltose/maltodextrin-binding periplasmic protein,Apolipoprotein E; Apolipoprotein E, LIPID BINDING PROTEIN; 1.549A {Homo sapiens}
Probab=22.16 E-value=1.5e+03 Score=24.68 Aligned_cols=101 Identities=9% Similarity=-0.013 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
......|....+.+...|.+...+..+.+.++.+.+..-+ ..-.......+..+++++++.|...-+-.
T Consensus 474 ~~l~~~l~~~~~~l~~~l~~~~~~l~~~i~~~~~~~~~~l-----------~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 542 (675)
T 8AX9_A 474 QAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRL-----------ASHLRKLRKRLLRDADDLQKRLAVYQAGA 542 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKE 168 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~ 168 (333)
++.+..+ .+++..+=...+.+|...+...+..
T Consensus 543 ~~~~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~ 574 (675)
T 8AX9_A 543 REGAERG-----LSAIRERLGPLVEQGRVRAATVGSL 574 (675)
T ss_dssp -------------------------------------
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
No 171
>4NNO_A Lipoprotein; Manganese transporter, MRSA, ABC superfamily ATP binding cassette transporter, TRANSPORT PROTEIN; 1.174A {Staphylococcus aureus subsp. aureus} SCOP: c.92.2.0
Probab=22.10 E-value=8.1e+02 Score=24.27 Aligned_cols=116 Identities=13% Similarity=0.229 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhc-CCCChHHHHHHhCCCH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF---SKEQL-NLKQYEQIKQALGLST 186 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~---~r~~~-gl~~~~~lK~~LGlSt 186 (333)
..+....+.|.+.|.++.-.+...|.+. ..+|.++=..|.++++..+.++ -+..+ .-+...-+=+.+|+..
T Consensus 128 ~~~~~~~~~i~~~L~~~~p~~~~~~~~n-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~vi~~~~~~~yl~~~~gl~~ 202 (291)
T 4NNO_A 128 DNGIKYVKTIQQTFIDNDKKHKADYEKQ-----GNKYIAQLEKLNNDSKDKFNDIPKEQRAMITSEGAFKYFSKQYGITP 202 (291)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHTTTTTTSCGGGCEEEEEECCCHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHCHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCHHHCeEEEecchHHHHHHHhCCeE
Q ss_pred HHHHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHH
Q FD01850236_028 187 KSIMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYE 239 (333)
Q Consensus 187 KSivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~e 239 (333)
-.+++ .. ++..-..+.+.++.+.+|-.+.--|-.+..........
T Consensus 203 ~~~~~------~~--~~~~~s~~~l~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 247 (291)
T 4NNO_A 203 GYIWE------IN--TEKQGTPEQMRQAIEFVKKHKLKHLLVETSVDKKAMES 247 (291)
T ss_dssp EEEES------ST--TSCSSCHHHHHHHHHHHHHTTCSCEEEESSSCSHHHHH
T ss_pred EEeec------cC--CCCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHH
No 172
>6MJ1_A Probable HTH-type transcriptional regulator YttP; TetR family, cell division, FtsZ regulator, DNA BINDING PROTEIN; 2.6A {Bacillus subtilis (strain 168)}
Probab=22.03 E-value=2.8e+02 Score=23.34 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 158 LDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 158 LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
|+..+.-+.++++.-..-.+|-+..|+|.+++-|||.
T Consensus 10 l~aa~~~~~~~g~~~~t~~~ia~~agvs~~~~y~~F~ 46 (207)
T 6MJ1_A 10 IESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFK 46 (207)
T ss_dssp HHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHcCCCHHHHHHHcC
No 173
>4DND_A Syntaxin-10; STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, TRANSPORT PROTEIN; HET: MSE; 1.4A {Homo sapiens} SCOP: a.47.2.1
Probab=22.01 E-value=8.4e+02 Score=21.57 Aligned_cols=93 Identities=10% Similarity=0.136 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q FD01850236_028 60 TARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNS 139 (333)
Q Consensus 60 ~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~ 139 (333)
.+...|...+. .-...+.+...++..-- +.++.-......-....++.|+..|+++++.-.-.-+..
T Consensus 31 ~v~~ev~~~l~----~l~~l~~~w~~~~~~~~--------~~~~~~~~~~~~eL~~~l~~i~~~L~dL~~tv~ive~np- 97 (130)
T 4DND_A 31 VVRGEVQKAVN----TARGLYQRWCELLQESA--------AVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP- 97 (130)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhcc--------cCChHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhCc-
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 140 GRIS-GEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 140 G~l~-~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
.+.. .++-.++|+....++..++..+
T Consensus 98 ~kF~I~~~El~~Rr~fv~~~r~~l~~i 124 (130)
T 4DND_A 98 GKFKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHH
No 174
>7ZAW_A Glypican-3; Glycoprotein, Migration, SIGNALING PROTEIN; HET: NAG; 2.58A {Homo sapiens}
Probab=21.90 E-value=1.6e+03 Score=24.69 Aligned_cols=124 Identities=21% Similarity=0.242 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred hHHHHHHHHHCCCC-----CcCCCcEEEecCCCCC---C-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHH
Q FD01850236_028 21 SGVKELYHQLNPEK-----KKKPGSILVVADPLSR---S-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFS 91 (333)
Q Consensus 21 ~~~~~~F~~LN~hl-----~v~pGqivIl~dP~~~---~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~ 91 (333)
..++..|...+... ...+|.=+-+..|... . ..|+.....+.+.....|+.-+..-+..+..+...++...
T Consensus 8 ~~v~~~f~~~~~~~~~vp~~p~~g~~l~vC~~~~~tCCt~~mE~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~f~~~~ 87 (464)
T 7ZAW_A 8 HQVRSFFQRLQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLIIQNAAVFQEAF 87 (464)
T ss_dssp CCCC-------------------CCCCSSSCCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHH----HHHHHHH
Q FD01850236_028 92 SNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGE---EFFGQRERLFKQ----LDGILNK 164 (333)
Q Consensus 92 ~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~---~F~a~R~~Lf~~----LD~~L~~ 164 (333)
.+-|+.+-+++..++.+.|... ...+.+ +||..-+..+.. |+..++.
T Consensus 88 -------------------------~~ll~~s~~~~~~~f~~~Y~~~-~~~~~~~~~~lf~~l~~~~~~~~~~l~~~v~~ 141 (464)
T 7ZAW_A 88 -------------------------EIVVRHAKNYTNAMFKNNYPSL-TPQAFEFVGEFFTDVSLYILGSDINVDDMVNE 141 (464)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHCGGG-TTHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHCccc-chhhHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHhc
Q FD01850236_028 165 FSKEQL 170 (333)
Q Consensus 165 ~~r~~~ 170 (333)
|....+
T Consensus 142 FF~~Lf 147 (464)
T 7ZAW_A 142 LFDSLF 147 (464)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 175
>3NZZ_A Cell invasion protein sipD; needle tip protein, PrgI, SipB, SipC, CELL INVASION; 1.65A {Salmonella enterica}
Probab=21.84 E-value=2.2e+02 Score=29.86 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHH-HHHHHHHHHHHHHHHH
Q FD01850236_028 46 DPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFG-YIKDAGGGYYEEINKV 123 (333)
Q Consensus 46 dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G-~~~~~~~~~l~~I~~~ 123 (333)
+..... .-...++....+.......+|++++++.+......=..+. ........ .....-...++.|.+.
T Consensus 35 ~~~~~~~~l~~~~~~~~l~~l~~~~~~l~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~S~~e~~~~i~~~ 106 (308)
T 3NZZ_A 35 EENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSAL--------FSASPMAQPRTTISDAEIWDMVSQN 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC-----------------------------HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhhccCCchHh--------hccCCCCCCCCCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q FD01850236_028 124 LNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQL 158 (333)
Q Consensus 124 L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~L 158 (333)
+..|++-|.+.|..- .-...+||..=..++.+|
T Consensus 107 I~~i~~~YL~~Y~~~--v~kYt~fy~~fs~i~s~l 139 (308)
T 3NZZ_A 107 ISAIGDSYLGVYENV--VAVYTDFYQAFSDILSKM 139 (308)
T ss_dssp HHHHCCCCCHHHHHH--HHHHHHHHHHHHHHHTTG
T ss_pred HHHHchhhHHHHHHH--HHHHHHHHHHHHHHHHHH
No 176
>3LJL_A transcriptional regulator LuxT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, DNA-binding, transcription regulator; HET: MES, MSE; 3.2A {Vibrio parahaemolyticus}
Probab=21.78 E-value=2.2e+02 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 158 LDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 158 LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
++..+.-+.+++..-....+|-+.+|+|.+++.||+.
T Consensus 20 ~~a~~~~~~~~g~~~~t~~~ia~~~gv~~~~~y~~f~ 56 (156)
T 3LJL_A 20 MDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFP 56 (156)
T ss_dssp HHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHCCCchHHhhcCC
No 177
>6FTJ_1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1; Protein translocon of the endoplasmic reticulum, PROTEIN TRANSPORT; HET: BMA, MAN, 9UB, MG, NAG; 4.7A {Oryctolagus cuniculus}
Probab=21.75 E-value=4.5e+02 Score=24.69 Aligned_cols=74 Identities=12% Similarity=0.248 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhC---CccCchHHHHHHHHHHHHHHHh
Q FD01850236_028 145 EEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTG---VRDIEGYASYIEKSAKLMKVMR 219 (333)
Q Consensus 145 ~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g---~g~Ipgya~~i~~vak~ak~~k 219 (333)
...+.+|..++.++|..++++-+.. ....+...++.+.-..|.+-.++...- ..+=|.+++++..+.+.-+.++
T Consensus 46 ~~~~~~r~~~y~~~~~a~~~~k~~k-d~~~~~~a~k~~~~~~k~~~~~i~~l~~~lk~~~~~~~~kv~elqk~d~~~~ 122 (162)
T 6FTJ_1 46 LTLVNKRIGLYRHFDETINRYKQSR-DVSTLNSGKKSLETEHKALTSEIASLQSRLKTEGSDLCDKVSEMQKLDAQVK 122 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
No 178
>7C7X_E NAP1-related protein 1; complex, Histone, PLANT PROTEIN, CHAPERONE, TRANSCRIPTION-CHAPERONE complex; HET: GOL; 3.0A {Arabidopsis thaliana} SCOP: d.305.1.0, l.1.1.1
Probab=21.75 E-value=5e+02 Score=25.20 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 115 GYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 115 ~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
+.|+.|+.-+.+|+..|.+...+. ...|..+|+.||.+-...+.++
T Consensus 15 ~~L~~~q~~~~~l~~~~~~~~~~l-----~~~~~~~~~pl~~~R~~ii~~i 60 (239)
T 7C7X_E 15 EKLQEIQDDLEKINEKASDEVLEV-----EQKYNVIRKPVYDKRNEVIQSI 60 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHhhC
No 179
>7C4J_D SWI/SNF complex subunit SWI3; SWI/SNF remodeling, Swi-Snf complex, nucleosome, DNA BINDING PROTEIN; 2.89A {Saccharomyces cerevisiae S288C}
Probab=21.66 E-value=2.2e+03 Score=26.28 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCCCHHHHHHHhhCCCChHHHHHHHHH-----------------CCCC-CcCCCcEEEecCCCCCCHHHHHHH------H
Q FD01850236_028 4 ELTTPKSYECELMVNPPSGVKELYHQL-----------------NPEK-KKKPGSILVVADPLSRSPEKIAQI------Q 59 (333)
Q Consensus 4 ~~~s~~~l~~~Lf~~~~~~~~~~F~~L-----------------N~hl-~v~pGqivIl~dP~~~~~~ee~~L------~ 59 (333)
.......+...+-+....+-+.+|.+| +..+ .++-...+-+++..++.....++| .
T Consensus 542 ygdDW~kIA~hVGTKT~eECIlkFLqLPIED~fL~~~~~~~~~~~~~lg~lk~~~~lPFs~a~NPVms~vAFLaslVdP~ 621 (825)
T 7C4J_D 542 FGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLYGDGNGKGDNDNGLGPLKYAPHLPFSKSENPVLSTIAFLVGLVNPK 621 (825)
T ss_dssp SSSCHHHHHHHHSSSCHHHHHHHHTTCCSSSCSSSCCCCC-------SSGGGGCCCCSSSCCCCHHHHHHHHHHTTSCHH
T ss_pred hCCCHHHHHHHcCCCCHHHHHHHHHhCCccchhcCCCCCCCCCCCCCCCccccCCCCCcccCCCcHHHHHHHHHhhcCHH
Q ss_pred HHHHHHHHHHhcCCHHH-----------------------------HHHHHHCHH-HHHHHHhhhccccccchhHHHHHH
Q FD01850236_028 60 TARDKIDKALEPLTNEE-----------------------------AKLLYENRT-PIDMFSSNIYSDALGQSGDIFGYI 109 (333)
Q Consensus 60 ~~A~~v~~~l~~Ls~~e-----------------------------a~fl~~~~~-~l~~~~~~~~~d~~~~~s~~~G~~ 109 (333)
-++..+..+|..|...+ +..+..+-+ -+..++
T Consensus 622 VAaAAA~aAl~~l~~~~~e~~~~s~~~~~~~vk~a~~~ALaaaa~rAk~lA~~EErei~~Lv------------------ 683 (825)
T 7C4J_D 622 TVQSMTQRAIQSAESIKSQKEEISDQKPIEHIKEGSEIAISSLGYRSHIFATNEERQMNFLT------------------ 683 (825)
T ss_dssp HHHHHCSSSCCSTTSHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH----------H
Q FD01850236_028 110 KDAGGGYYEEINKVLNEIQELYKKTYSQNSG--RISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYE----------Q 177 (333)
Q Consensus 110 ~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G--~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~----------~ 177 (333)
.......++.|+--|+.++.+.+-.-+.. - -..+++.|.+|..|.++......+|..-.-.+.+.. +
T Consensus 684 ~~Lve~QlkKlElKLk~leeLE~~le~Er-~~LekqR~~l~~dRl~l~k~~~~v~~kl~~~~~~~~~~~~~~~~~~~~~~ 762 (825)
T 7C4J_D 684 NELIRLQMEKLDAKLNHLKKLEKFMELER-KTLERQQENLLIQRLNFNQNSSKIVNVLSKCLNLISDSNINNSSVAEKEE 762 (825)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCchhhHHH
Q ss_pred HHHHh
Q FD01850236_028 178 IKQAL 182 (333)
Q Consensus 178 lK~~L 182 (333)
||+.|
T Consensus 763 ~~~~~ 767 (825)
T 7C4J_D 763 IRSQI 767 (825)
T ss_dssp HHHHH
T ss_pred HHHHH
No 180
>PF17508.6 ; MccV ; Microcin V bacteriocin
Probab=21.59 E-value=3.3e+02 Score=24.07 Aligned_cols=39 Identities=26% Similarity=0.572 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred ccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhc
Q FD01850236_028 288 LLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVIY 332 (333)
Q Consensus 288 ~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~iY 332 (333)
| .-+.....+...+ ++++|+++|+..+..+|-.+|-.+|
T Consensus 12 V---sGG~~~~~~g~~~---Ga~~G~~~GG~~Ga~~Gg~vGG~~y 50 (102)
T A0A0E2LAX3_ECO 12 V---SGGASGRDIAMAI---GTLSGQFVAGGIGAAAGGVAGGAIY 50 (102)
T ss_pred c---cCCcchHHHHHHH---HHHHHHHhHhHHHHHHHHHHHHHHH
No 181
>8AFZ_B Sorting nexin-5; sorting nexins, PX domain, BAR domain, endosomes, retrograde transport, endocytic recycling, cargo recognition, protein coat, membrane; 10.0A {Homo sapiens}
Probab=21.58 E-value=1.1e+03 Score=23.96 Aligned_cols=121 Identities=7% Similarity=0.078 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 45 ADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKV 123 (333)
Q Consensus 45 ~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~ 123 (333)
.||.-.. ......+...-+.+...+..+.....+....+-++-..+. ..+... .......++.+.+.
T Consensus 205 ~d~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~e----~~~l~~~l~~~~~~ 272 (404)
T 8AFZ_B 205 VDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLH--------SLALEE----PTVIKKYLLKVAEL 272 (404)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHSS----CHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhccC----CHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHh
Q FD01850236_028 124 LNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQAL 182 (333)
Q Consensus 124 L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~L 182 (333)
+.++...+++..... ...|...-+.....++..-.-+-++.--+.++.+.++.+
T Consensus 273 ~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~l 326 (404)
T 8AFZ_B 273 FEKLRKVEGRVSSDE-----DLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKAL 326 (404)
T ss_dssp HHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 182
>4LWS_B Uncharacterized protein; ESX Secretion, Signal Sequence, Type VII Secretion, UNKNOWN FUNCTION; HET: ACT, GOL, MSE; 2.0A {Thermomonospora curvata}
Probab=21.55 E-value=5.3e+02 Score=19.10 Aligned_cols=71 Identities=10% Similarity=0.181 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 56 AQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKT 134 (333)
Q Consensus 56 ~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~ 134 (333)
..|...++.+......+.....+.-..-..+...+. +............|...++.+...|.++.....+.
T Consensus 16 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 86 (103)
T 4LWS_B 16 GGLSEGEAQFSMTARALLDELTDLEGKLRAKLDRWD--------GDAQAAYWNYQKEWDAAAKDMQNVVAQLGVAIREA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 183
>7JJ9_A Zinc-binding lipoprotein AdcA; AdcA, SBP, ATP-binding cassette transporter, Zn acquisition, METAL BINDING PROTEIN; 1.58A {Streptococcus pneumoniae (strain ATCC BAA-255 / R6)}
Probab=21.48 E-value=7.4e+02 Score=26.84 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHhCCCHHH
Q FD01850236_028 111 DAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL--NLKQYEQIKQALGLSTKS 188 (333)
Q Consensus 111 ~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~--gl~~~~~lK~~LGlStKS 188 (333)
..+.+..+.|.+.|.++.-.+.+.|.++ ...|..+-++|.++++..+..+-.+.+ .=+...-+=+.+||....
T Consensus 120 ~~~~~~a~~Ia~~L~~~dP~~~~~y~~n-----~~~~~~~L~~l~~~~~~~~~~~~~~~vv~~h~a~~Yf~~~~gl~~~~ 194 (475)
T 7JJ9_A 120 VRAIKLVEHIRDSLSADYPDKKETFEKN-----AAAYIEKLQSLDKAYAEGLSQAKQKSFVTQHAAFNYLALDYGLKQVA 194 (475)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCeEEEechHHHHHHHHhCCeEEE
Q ss_pred HHhccHhhCCccCchHHHHHHHHHHHHHHHhhcceeeeEeeccchHHHHHH
Q FD01850236_028 189 IMHKWDQTGVRDIEGYASYIEKSAKLMKVMRTTGYVGIGLDFSSYTTNVYE 239 (333)
Q Consensus 189 ivH~W~~~g~g~Ipgya~~i~~vak~ak~~k~gGyvgi~L~~~~s~~~I~e 239 (333)
++- .-++.....+.+.+..+.+|..+.-.|-.+.......+..
T Consensus 195 ~~~--------~~~~~~~s~~~l~~l~~~i~~~~v~~i~~~~~~~~~~~~~ 237 (475)
T 7JJ9_A 195 ISG--------LSPDAEPSAARLAELTEYVKKNKIAYIYFEENASQALANT 237 (475)
T ss_dssp CCS--------CCTTCCCCHHHHHHHHHHHHHHTCCEEEESSCCCHHHHHH
T ss_pred eec--------CCCCCCCCHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHH
No 184
>PF05818.16 ; TraT ; Enterobacterial TraT complement resistance protein
Probab=21.46 E-value=2e+02 Score=27.96 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhc
Q FD01850236_028 260 FGGKQTASAFGGIAGGAIGRSACMWVMGLLTSEGGGIGAGLCLVVGIGSGIAGGKIVERFGENAGESLGKVIY 332 (333)
Q Consensus 260 f~G~~~GG~~Gg~~g~~~a~~iC~~~lG~~~~~t~G~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~Ge~iY 332 (333)
+.+++.|++.|+.+| .++|- ..++.+ .+++|+.+|+..|..++...=+..|
T Consensus 84 l~~g~gg~~~G~~~G---------~~~g~---~~~~~~----------~~~~g~~~G~~~g~~~~~~~~~~~y 134 (213)
T E1QGA2_DESB2/3 84 SGAGFGGAIAGAAAG---------ALIAR---SGSELG----------GAAIGGIAAGAAEVIAGSMVKVNWF 134 (213)
T ss_pred HhcccchhhhHHHHh---------HHHcc---CCCccc----------hhHHHHHHHHHHHHHHhhhccccEE
No 185
>PF21609.1 ; Toxofilin-like_dom ; Toxofilin-like domain
Probab=21.40 E-value=2.7e+02 Score=23.55 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=0.0 Template_Neff=1.700
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCHH
Q FD01850236_028 59 QTARDKIDKALEPLTNEEAKLLYENRT 85 (333)
Q Consensus 59 ~~~A~~v~~~l~~Ls~~ea~fl~~~~~ 85 (333)
+++-.+|.+.|..||||....+.+||.
T Consensus 52 Q~aYEqvq~dl~~mSPEtKalLIen~~ 78 (84)
T B9QND9_TOXGV/8 52 QQAYEQVKKDLLEMSPETKSLLIENRK 78 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhH
No 186
>4XWH_A Alpha-N-acetylglucosaminidase; Glycosidase, Hydrolase; HET: XYL, BMA, GOL, NAG, NEP; 2.32A {Homo sapiens}
Probab=21.20 E-value=1.8e+03 Score=25.16 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHCCCC--CcC-----CCcEEEecCCC------CCC-HHHHHHHHHHHHHHHHHHhcCC
Q FD01850236_028 8 PKSYECELMVNPPSGVKELYHQLNPEK--KKK-----PGSILVVADPL------SRS-PEKIAQIQTARDKIDKALEPLT 73 (333)
Q Consensus 8 ~~~l~~~Lf~~~~~~~~~~F~~LN~hl--~v~-----pGqivIl~dP~------~~~-~~ee~~L~~~A~~v~~~l~~Ls 73 (333)
++++....|+...+..++.++.|-... ... ++.-++...|. ... ..+.....+..-...+.+..-+
T Consensus 452 l~~y~~~rYG~aa~~m~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~a~~~ll~~a~~~~~~~ 531 (720)
T 4XWH_A 452 VTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHNRSPLVRRPSLQMNTSIWYNRSDVFEAWRLLLTSAPSLATSP 531 (720)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHTTTBCCSTTCCBCCCCGGGSCCCTTCCCCCSSCHHHHHHHHHHHHHTHHHHTTCH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHhhcCCCcccCCCccCceeecCCCCCCCCCCCCHHHHHHHHHHHHhhChhhcCCH
Q ss_pred HHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHH
Q FD01850236_028 74 NEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEE-FFGQRE 152 (333)
Q Consensus 74 ~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~-F~a~R~ 152 (333)
.-..+.+.-..+.|.... ...+.++.+.|...=... -.. -.++-.
T Consensus 532 ~~~~dlvd~~r~~l~~~~-----------------------------~~~~~~~~~a~~~~d~~~-----~~~~~~~~~~ 577 (720)
T 4XWH_A 532 AFRYDLLDLTRQAVQELV-----------------------------SLYYEEARSAYLSKELAS-----LLRAGGVLAY 577 (720)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHTTCHHH-----HHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHcCCHHH-----HHHHHHHHHH
Q ss_pred HHHHHHHHHH--------HHHHHHhcCCCChHHHHHHhCCCHHHHHhccHhhC-CccCchHHHH
Q FD01850236_028 153 RLFKQLDGIL--------NKFSKEQLNLKQYEQIKQALGLSTKSIMHKWDQTG-VRDIEGYASY 207 (333)
Q Consensus 153 ~Lf~~LD~~L--------~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~~~g-~g~Ipgya~~ 207 (333)
.++..||..| ..+.++.-..+..+.-|+.+-...|.++--| | .+.|..|+.+
T Consensus 578 ~l~~~ld~ll~~~~~~~L~~wi~~a~~~~~~~~~~~~~e~nar~~~t~w---g~~~~l~dYa~~ 638 (720)
T 4XWH_A 578 ELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW---GPEGNILDYANK 638 (720)
T ss_dssp CCHHHHHHHHTTSGGGBHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTS---STTCTTTTTTCC
T ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHhCCCHHHHHHHHHhHHHHHHhc---CCCCCHHHHHhH
No 187
>7O4J_1 General transcription and DNA repair factor IIH subunit TFB1; Pre-initiation complex, TRANSCRIPTION; HET: ZN, ADP; 2.9A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=21.13 E-value=2.1e+02 Score=32.82 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q FD01850236_028 125 NEIQELYKKTYSQNSGRISGEEFFGQRERLFKQ 157 (333)
Q Consensus 125 ~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~ 157 (333)
.+|.++|++.+.. |.+..++|+..|+.|+..
T Consensus 192 ~~L~~l~~eLV~~--g~ise~eFW~~r~~lL~~ 222 (645)
T 7O4J_1 192 KVLMKVFQETVIN--AGLPPSEFWSTRIPLLRA 222 (645)
T ss_dssp HHHHHHHCCCCCC--SCCCHHHHTGGGHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHhccHHHHHH
No 188
>7EMF_G Mediator of RNA polymerase II transcription subunit 7; Mediator complex, TRANSCRIPTION; 3.5A {Homo sapiens}
Probab=21.12 E-value=4.2e+02 Score=26.57 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HhhCCCChHHHHHHHHHCCCC---CcCCCcEEEecCCCCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHH
Q FD01850236_028 14 ELMVNPPSGVKELYHQLNPEK---KKKPGSILVVADPLSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDM 89 (333)
Q Consensus 14 ~Lf~~~~~~~~~~F~~LN~hl---~v~pGqivIl~dP~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~ 89 (333)
.||+. ..+.+..+++||..+ ++.-=+++ +.+|+... ....+.|...-...+..|..+-+.+| ++.|..
T Consensus 66 ~Lyp~-~~D~k~eLkkLn~sll~~fl~LLd~L-~~~P~~~~~~~kie~l~~lfiNmhhLlNe~RPhQA------RetL~~ 137 (233)
T 7EMF_G 66 RLHPM-QFDHKKELRKLNMSILINFLDLLDIL-IRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQA------RETLRV 137 (233)
T ss_dssp CCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCSHHHHHHHHHHHHHHHHHHHHHTHHHHHH------HHHHHH
T ss_pred ecCCC-CCchHHHHHHHHHHHHHHHHHHHHHH-HHCCCccchHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Q ss_pred HHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 90 FSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEI 127 (333)
Q Consensus 90 ~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~I 127 (333)
++ -.--.----.+..+.++++.+.+.|++.
T Consensus 138 ml--------e~Qi~~R~e~~~~l~~~l~~~~~~l~~~ 167 (233)
T 7EMF_G 138 MM--------EVQKRQRLETAERFQKHLERVIEMIQNC 167 (233)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 189
>7WKK_i MGC84997 protein; nuclear pore complex, inner ring, Nup205, Nup93, Nup188, Nup155, NDC1, Aladin, STRUCTURAL PROTEIN; 4.2A {Xenopus laevis}
Probab=21.00 E-value=2e+03 Score=25.56 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred HHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q FD01850236_028 63 DKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRI 142 (333)
Q Consensus 63 ~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l 142 (333)
+++.+.|+ +-..++..+.++-+++. ... |-...-....++.+++.|..|...-+.....-
T Consensus 283 EqaQKeLE----qIDs~IQgQiQIseeLk--------qrk----GeEI~K~qedIkaLsQEL~aIsSTLqsD~~aL---- 342 (599)
T 7WKK_i 283 QLLCQDVE----NFQKFVKEQKQVQEEIS--------RMS----SKAMLKVQEDIKALKQLLSVASSGLQRNALAI---- 342 (599)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHH--------HTC----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH--------hcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHHHHHHH
Q FD01850236_028 143 SGEEFFGQRERLFKQLDGILNKFSK--EQLNLKQYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEKSAKLM 215 (333)
Q Consensus 143 ~~~~F~a~R~~Lf~~LD~~L~~~~r--~~~gl~~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~vak~a 215 (333)
+.|..|+|..+..... +.+.++.+.+ .-.--..-++.+|-+.-...+..|.+.|+.|.+..
T Consensus 343 ---------eDLRaKVdQ~LRDtevAtRIIEr~gfKn---~hA~FP~EYFtRLAeQMeERLe~YKqTIEQIERhL 405 (599)
T 7WKK_i 343 ---------DKLKIETAEELKNAEIALRTQKTPPGLQ---HENTAPADYFHTLVQQFEVQLQQYRQQIEELENHL 405 (599)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCCCccC---ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>2HUJ_A Lin2004 protein; NP_471338.1, hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, UNKNOWN; HET: MSE; 1.74A {Listeria innocua} SCOP: a.24.26.1, l.1.1.1
Probab=20.88 E-value=6.7e+02 Score=23.29 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhCCCHHHH
Q FD01850236_028 110 KDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQLNLKQYEQIKQALGLSTKSI 189 (333)
Q Consensus 110 ~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSi 189 (333)
.......++..++.|+.++.++....... ..-...+||.+=+--..+.|..+..| .+..+.-+.--....
T Consensus 16 ~~~~~~L~~~T~~Ll~~~~~~~~~y~~~k-~~~~~~DF~~eVKPFad~v~~~~~~W---------~~~a~~wi~~~~pky 85 (140)
T 2HUJ_A 16 YFQGMELLIRTEQLLLQNEKNWELYLSNR-EEEKPFDFYKDMKPFVDEAKRCADDF---------LELAIPWVNTERPPY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCchHHhhHHHHHHHHHHHHHH---------HHHHHHHHHccCCCC
Q ss_pred HhccHhhCCccCchHHHHHHHHH
Q FD01850236_028 190 MHKWDQTGVRDIEGYASYIEKSA 212 (333)
Q Consensus 190 vH~W~~~g~g~Ipgya~~i~~va 212 (333)
+| +.+|..-.++|+.++
T Consensus 86 lh------~~QIe~t~eNie~ls 102 (140)
T 2HUJ_A 86 LG------ELQLRQACDNVQMTA 102 (140)
T ss_dssp CC------HHHHHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHHHHHH
No 191
>5C4Y_A Putative transcription regulator Lmo0852; Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Transcriptional factor, Listeria monocytogenes, TRANSCRIPTION; HET: MSE; 1.77A {Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)}
Probab=20.83 E-value=3.2e+02 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhCCCHHHHHhccH
Q FD01850236_028 158 LDGILNKFSKEQLNLKQYEQIKQALGLSTKSIMHKWD 194 (333)
Q Consensus 158 LD~~L~~~~r~~~gl~~~~~lK~~LGlStKSivH~W~ 194 (333)
|+..+.-+.++++.--.-.+|=+..|+|.+++-||+.
T Consensus 7 l~aa~~~~~~~g~~~~s~~~ia~~agvs~~~~y~~F~ 43 (184)
T 5C4Y_A 7 KEVALTLFAEKGYDGTALSEIAKAVGIKTPSLYAHFA 43 (184)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHhCC
No 192
>5TGY_A PS1; 4-helix bundle, coiled-coil, holoprotein, UNKNOWN FUNCTION; HET: 7BU; NMR {Escherichia coli}
Probab=20.82 E-value=9.3e+02 Score=21.60 Aligned_cols=65 Identities=28% Similarity=0.195 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 55 IAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQEL 130 (333)
Q Consensus 55 e~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~l 130 (333)
|..++...+-.++.+....-|-+..+.+.-.+++.+- ...--.--++++++++++++.+.++++|
T Consensus 40 e~l~qkh~eL~~~~~e~~~~Ea~~~~de~vqlFqr~r-----------ea~dkGDdDS~Eq~LeelE~~~qK~~~L 104 (109)
T 5TGY_A 40 EELIQKHRQLFDNRQEAADTEAAKQGDQWVQLFQRFR-----------EAIDKGDKDSLEQLLEELEQALQKIREL 104 (109)
T ss_dssp HHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCccHHHHHHHHHHHHHHHHHHH
No 193
>1CIQ_A CHYMOTRYPSIN INHIBITOR 2; CLEAVED INHIBITOR, SERINE PROTEASE INHIBITOR; 2.2A {Hordeum vulgare} SCOP: d.40.1.1
Probab=20.68 E-value=1.6e+02 Score=20.46 Aligned_cols=31 Identities=26% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHhhCCCChHHHHHHHHHCCCC---CcCCCcEE
Q FD01850236_028 12 ECELMVNPPSGVKELYHQLNPEK---KKKPGSIL 42 (333)
Q Consensus 12 ~~~Lf~~~~~~~~~~F~~LN~hl---~v~pGqiv 42 (333)
|.+|.+.....+.+.+++-|+.. .+.+|+++
T Consensus 5 WPelvG~~~~~A~~~I~~e~p~v~v~v~~~g~~v 38 (40)
T 1CIQ_A 5 WPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIV 38 (40)
T ss_dssp CGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC
T ss_pred chHHcCeeHHHHHHHHHHHCCCCEEEEeCCCCcc
No 194
>7A0H_B F-actin-capping protein subunit alpha; capping protein, F-actin binding, asymmetric homodimer, PROTEIN BINDING; HET: EPE, BR, GOL; 2.22A {Plasmodium berghei (strain Anka)}
Probab=20.67 E-value=2.1e+02 Score=29.26 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q FD01850236_028 118 EEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERL 154 (333)
Q Consensus 118 ~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~L 154 (333)
+.|-+.+++.|+.||..+...-..|+...|-.-||+|
T Consensus 248 ~~iv~~I~~~E~~~q~~l~~~~~~lse~~fK~LRR~L 284 (294)
T 7A0H_B 248 SSILSVIRECENDVLYDLNHLIANTSSDLIKNTRKII 284 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhC
No 195
>2P7N_A Pathogenicity island 1 effector protein; cvr69, Pathogenicity island 1 effector protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; HET: MSE; 2.8A {Chromobacterium violaceum}
Probab=20.36 E-value=8.5e+02 Score=26.90 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhh---hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 54 KIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSN---IYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQEL 130 (333)
Q Consensus 54 ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~---~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~l 130 (333)
...+|....+.......+|++++++.+..-..-+-.-+.. .............+.....-...++.|.+.+..|++-
T Consensus 116 ~~~~l~~~l~~l~~~~~~l~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~e~~~~I~~~I~~ik~~ 195 (407)
T 2P7N_A 116 SARLFEGNLKGVAQSGHAMSAEQKQALQSGLDDVFADAPPQARSAGAPMLYSANAAAGQGMADSDLWDMISDQIGKIKDN 195 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHSSCCHHHHTTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHHHHHhcCChhHHhcCCCcccchhhhhcCCCChHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 131 YKKTYSQNSGRISGEEFFGQRERLFKQLDGILN 163 (333)
Q Consensus 131 y~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~ 163 (333)
|.+.|..- .-...+||..=..++.+|-.-+.
T Consensus 196 YL~~Ye~~--v~kYt~Fyqdfs~ilskl~~~I~ 226 (407)
T 2P7N_A 196 YLGVYENV--VGQYTDFYKAFSDILSQMANWIK 226 (407)
T ss_dssp CCHHHHHH--HHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc
No 196
>3K2S_B Apolipoprotein A-I; super double helix, amphipathic, Amyloid, Amyloidosis, Atherosclerosis, Cholesterol metabolism, Disease mutation, Glycation, Glycoprotein, HDL, Lipid metabolism; HET: POV, CLR;{Homo sapiens}
Probab=20.35 E-value=1.2e+03 Score=22.54 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 52 PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELY 131 (333)
Q Consensus 52 ~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly 131 (333)
..-...+......+...|.+..++-.+.+.++.+-+..-+ ...+.-....+..++++++..+...-.-+
T Consensus 124 ~~l~~~~~~~~~~l~~~l~~~~~~l~~~l~~~~~~l~~~l-----------~~~~~~l~~~l~~~~~~l~~~~~~~~~~l 192 (243)
T 3K2S_B 124 AELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL-----------APYSDELRQRLAARLEALKENGGARLAEY 192 (243)
T ss_dssp TTTTTTHHHHGGGTTTTTCCCCCTTSTHHHHHTTSCCCCS-----------SSCCCCCCCCCSSHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-ChHHHHHHhC
Q FD01850236_028 132 KKTYSQNSGRISGEEFFGQRERLFKQLDGILNKFSKEQL-NLK-QYEQIKQALG 183 (333)
Q Consensus 132 ~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~~r~~~-gl~-~~~~lK~~LG 183 (333)
++.+... ..++-.+-...+..|...|...+...- .+. ....+++.|+
T Consensus 193 ~~~~~~~-----~~~l~~~l~p~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 241 (243)
T 3K2S_B 193 HAKATEH-----LSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLN 241 (243)
T ss_dssp HHHHHHH-----HHTTTTTCCCCSSSSTTSHHHHHHHHHHGGGGCTTTSSCSSS
T ss_pred HHHHHHH-----HHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
No 197
>PF19224.4 ; pATOM36 ; pATOM36 family
Probab=20.32 E-value=1.1e+02 Score=31.43 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q FD01850236_028 296 IGAGLCLVVGIGSGIAGGKIVERFGENAGESLG 328 (333)
Q Consensus 296 ~g~l~C~iv~~~~~~~G~~~Gg~~G~~~Ge~~G 328 (333)
....+|..+ ++++|..+||.-|+-+||-+|
T Consensus 212 ~t~t~~~~~---Ga~~Grav~G~rGEYWGEi~G 241 (260)
T E9AI25_LEIBR/3 212 VTVTLVGAI---GAGVGRAAIGERGEYWGNIAG 241 (260)
T ss_pred HHHHHHHHH---HHHHHHHhcCCCCccHHHHHH
No 198
>7OS9_AA Trp operon repressor; host crystal, domain swapping, DNA BINDING PROTEIN; 2.45A {Escherichia coli}
Probab=20.31 E-value=8.6e+02 Score=22.07 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q FD01850236_028 62 RDKIDKALEP-LTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQ 137 (333)
Q Consensus 62 A~~v~~~l~~-Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~ 137 (333)
..++..-+.. ||++|...+.+.+.++..++.+ +.+..-+.-........+..+.+.|++-..-|+..+.+
T Consensus 55 ~~e~~~fl~~lLT~~E~~~l~~Rl~i~~~Ll~~------g~s~~eIa~~LgVS~sTIsr~~~~l~~~~~~~~~~l~k 125 (131)
T 7OS9_AA 55 NDLHLPLLNLMLTPDEREALGTRVRIVEELLRG------EMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE 125 (131)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC------CCCHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHH
No 199
>PF10157.13 ; BORCS6 ; BLOC-1-related complex sub-unit 6 C-terminal helix
Probab=20.30 E-value=7.9e+02 Score=20.62 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 48 LSRS-PEKIAQIQTARDKIDKALEPLTNEEAKLLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNE 126 (333)
Q Consensus 48 ~~~~-~~ee~~L~~~A~~v~~~l~~Ls~~ea~fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~ 126 (333)
..+. +...+.|...|+.+...+..|-..-...+.+--+.-..-+ ..-...++.....+..-++.....+.+
T Consensus 1 ~~~~d~~~L~~lE~~a~~la~~~~~l~~~l~~~l~~~s~~t~~~~--------~~~~~sv~~~~~~vd~~i~~~~~li~~ 72 (101)
T A0A6G0V0P1_9BI 1 DLIPDPNLIHDLEVQARAISSNVDMCLRDLRGSLRGMSDLTLEHM--------QTYSSCINSTCENVDASIKSMYKLVAK 72 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q FD01850236_028 127 IQELYKKTYSQNSGRISGEEFFGQRERLFKQLD 159 (333)
Q Consensus 127 Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD 159 (333)
.+++.++. .. -+..-.+-+.+.+.||
T Consensus 73 ceeL~~~m--~~-----i~~la~~ik~ir~~ld 98 (101)
T A0A6G0V0P1_9BI 73 AEELSESM--RD-----AKKVANQVKDMRRLVE 98 (101)
T ss_pred HHHHHHHh--HH-----HHHHHHHHHHHHHHHH
No 200
>5X7V_A Nucleosome assembly protein; NUCLEOSOME ASSEMBLY PROTEIN, HISTONE RECOGNITION, CHAPERONE; 2.802A {Plasmodium falciparum} SCOP: d.305.1.0
Probab=20.24 E-value=5.4e+02 Score=24.02 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 115 GYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQLDGILNKF 165 (333)
Q Consensus 115 ~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~LD~~L~~~ 165 (333)
+.++.|++.|.+++.-|.+..... ...|..+|+.|+.+-+..+.++
T Consensus 3 ~~l~~~q~~l~~l~~~~~~~~~~l-----~~~~~~~~~~l~~~R~~ii~~i 48 (193)
T 5X7V_A 3 QDFEDIQKDIEQLDIKCAHEQMNI-----QKQYDEKKKPLFEKRDEIIQKI 48 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHhcC
No 201
>2B1E_A Exocyst complex component EXO70; tethering complex, exocyst, ENDOCYTOSIS-EXOCYTOSIS COMPLEX; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.17 E-value=8.7e+02 Score=26.73 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH----------H
Q FD01850236_028 79 LLYENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTYSQNSGRISGEEF----------F 148 (333)
Q Consensus 79 fl~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F----------~ 148 (333)
||+.|+..|...+ ..+ +...-......+.+++.-+...+.|...+.+-...|....+ -
T Consensus 416 FllNN~~yi~~~l--------~~s----~l~~~lg~~~~~~~~~~~~~~~~y~~~~W~~~~~~L~~~~~~~~~g~~~~~r 483 (564)
T 2B1E_A 416 FILMNLTLVEQIV--------EKS----ELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDK 483 (564)
T ss_dssp HHHHHHHHHHHHH--------HTS----THHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCCCCH
T ss_pred eHHHHHHHHHHHH--------hcc----hHHHHhcchhHHHHHHHHHHHHHHhhHhcHHHHHHHHhccccCCCCCchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhCCCHHHHHhccHhhCCccCchHHHHHHH
Q FD01850236_028 149 GQRERLFKQLDGILNKFSKEQLNLK-QYEQIKQALGLSTKSIMHKWDQTGVRDIEGYASYIEK 210 (333)
Q Consensus 149 a~R~~Lf~~LD~~L~~~~r~~~gl~-~~~~lK~~LGlStKSivH~W~~~g~g~Ipgya~~i~~ 210 (333)
..-+..|++....+..+.+..-... +++.||+.|.-+.+..|- |.|.+-+++
T Consensus 484 ~~iK~~f~~Fn~~fe~~~~~q~~~~v~D~~LR~~L~~~i~~~v~----------p~Y~~f~~k 536 (564)
T 2B1E_A 484 EQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVM----------PMYERFYSR 536 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHH
No 202
>1LS4_A Apolipophorin-III; Helix-bundle, exchangeable apolipoprotein, LIPID TRANSPORT; NMR {Locusta migratoria} SCOP: a.63.1.1
Probab=20.17 E-value=1.2e+03 Score=22.69 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHCHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01850236_028 58 IQTARDKIDKALEPLTNEEAKLL--YENRTPIDMFSSNIYSDALGQSGDIFGYIKDAGGGYYEEINKVLNEIQELYKKTY 135 (333)
Q Consensus 58 L~~~A~~v~~~l~~Ls~~ea~fl--~~~~~~l~~~~~~~~~d~~~~~s~~~G~~~~~~~~~l~~I~~~L~~Ie~ly~~~~ 135 (333)
|.+....+...+..+..+-.+.+ -+.-+++..+- ..++.....+.+...+.-+++++.++++..-..+..
T Consensus 26 l~el~~~Aq~~i~~~~~~i~~~l~~p~~eev~~~lk--------~qs~~~a~~lq~~~ee~K~ele~~~~~v~~kL~et~ 97 (180)
T 1LS4_A 26 IAEAVQQLNHTIVNAAHELHETLGLPTPDEALNLLT--------EQANAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFA 97 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTHHHHH--------HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCCCCHHH------HHHHHHHHHHHHHH---HHHHHHHHh
Q FD01850236_028 136 SQNSGRISGEE------FFGQRERLFKQLDG---ILNKFSKEQ 169 (333)
Q Consensus 136 ~~~~G~l~~~~------F~a~R~~Lf~~LD~---~L~~~~r~~ 169 (333)
..- -.-. |+ -..+=..|-.+|+. .+..++...
T Consensus 98 ~~L-~~~~-Pe~~~~~~~~~qa~elq~kfq~~~~~~qt~v~Es 138 (180)
T 1LS4_A 98 RNL-NNSI-HDAATSLNLQDQLNSLQSALTNVGHQWQDIATKT 138 (180)
T ss_dssp HHH-HHHH-HTTSCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhC-hhHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHH
No 203
>7VF4_A Vps75; Candida albicans, Vps75, Histone Chaperon, histone lysine acetylation, Rtt109, CHAPERONE; 3.1A {Candida albicans (strain SC5314 / ATCC MYA-2876)}
Probab=20.12 E-value=3.3e+02 Score=26.46 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q FD01850236_028 115 GYYEEINKVLNEIQELYKKTYSQNSGRISGEEFFGQRERLFKQL 158 (333)
Q Consensus 115 ~~l~~I~~~L~~Ie~ly~~~~~~~~G~l~~~~F~a~R~~Lf~~L 158 (333)
+.++.++.-+.+++...++.|.+. ...+|.+|+.+.+.+
T Consensus 16 ~~l~~lq~e~~~~~~~l~~~~~~~-----~~pl~~~R~~ii~~I 54 (235)
T 7VF4_A 16 DKLGDWEKEMSQVEREAEIYRIKK-----TQPMYAKRRSILKEI 54 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHhCC