Query         FD01844767_04578 RHS repeat family protein

Match_columns 114

No_of_seqs    28 out of 33

Neff          4.80362

Searched_HMMs 86581

Date          Tue Feb 27 19:51:50 2024

Command       hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/3968975.hhr -oa3m ../results/3968975.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM

  1 4LH9_A Heterocyst differentiat  33.0 1.3E+02  0.0016   19.2   3.0   21   20-50      2-22  (40)

No 1

>4LH9_A Heterocyst differentiation control protein; single helix, loop packing around, heterocyst development, heterocyst patterning, TRANSCRIPTION; 2.049A {Nostoc}

Probab=32.96  E-value=1.3e+02  Score=19.19  Aligned_cols=21  Identities=10%  Similarity=0.235  Sum_probs=0.0  Template_Neff=3.200

Q ss_pred             CCHHHHHHHHHHHHHhcCCCChhHhhHHHHH

Q FD01844767_045   20 LTPQEAAGVIHNMETMHNVYNPLSKYVFGIS   50 (114)

Q Consensus        20 ls~ee~~~al~~~a~~~g~~nP~~eyV~gWa   50 (114)

                      .+||++++|+..          +.+.++.||

T Consensus         2 Ip~e~~e~A~~E----------LDe~ir~WA   22 (40)

T 4LH9_A            2 VPPERWDEAMQE----------LDEIIRTWA   22 (40)

T ss_dssp             CCCSSCHHHHHH----------HHHHHHHHH

T ss_pred             CCHHHHHHHHHH----------HHHHHHHHH