Query FD01845416_04125 type IV secretion protein Rhs
Match_columns 122
No_of_seqs 12 out of 14
Neff 2.98507
Searched_HMMs 86581
Date Tue Feb 27 19:37:48 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7636672.hhr -oa3m ../results/7636672.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14427.10 ; Pput2613-deam ; P 98.9 3.7E-09 4.3E-14 76.3 5.2 60 28-106 43-102 (117)
2 5W0R_B MBP fused activation-in 95.6 0.053 6.2E-07 45.0 5.5 51 32-96 420-470 (549)
3 2NYT_A Probable C->U-editing e 95.4 0.071 8.2E-07 41.3 5.1 49 33-96 61-109 (190)
4 PF18782.5 ; NAD2 ; Novel AID A 95.1 0.1 1.2E-06 38.6 4.9 46 36-96 52-98 (173)
5 PF18774.5 ; APOBEC4_like ; APO 95.1 0.072 8.3E-07 38.2 4.0 64 14-96 10-73 (117)
6 5W2M_A DNA dC->dU-editing enzy 94.8 0.13 1.5E-06 39.2 5.2 49 33-96 57-106 (184)
7 1R5T_C Cytidine deaminase; Zin 94.8 0.17 2E-06 34.7 5.2 63 28-105 53-119 (142)
8 PF14431.10 ; YwqJ-deaminase ; 94.7 0.11 1.3E-06 38.0 4.3 60 32-91 70-148 (150)
9 PF14424.10 ; Toxin-deaminase ; 94.4 0.84 9.7E-06 28.0 7.0 55 36-105 78-133 (133)
10 PF18767.5 ; AID ; Activation i 94.3 0.16 1.9E-06 34.9 4.1 47 33-100 3-49 (89)
11 5K81_F Apolipoprotein B mRNA e 94.3 0.24 2.8E-06 38.7 5.5 48 34-96 68-117 (196)
12 5HX4_A DNA dC->dU-editing enzy 94.2 0.2 2.4E-06 39.1 4.9 48 33-95 72-120 (199)
13 3V4K_B DNA dC->dU-editing enzy 94.1 0.19 2.1E-06 39.6 4.6 49 33-96 77-126 (203)
14 2MZZ_A Apolipoprotein B mRNA-e 94.1 0.25 2.9E-06 37.5 5.2 50 32-96 50-100 (180)
15 8E5D_A Double-stranded DNA dea 93.9 0.73 8.4E-06 35.7 7.3 84 21-122 41-130 (139)
16 5TKM_A DNA dC->dU-editing enzy 93.7 0.24 2.8E-06 38.8 4.6 48 34-96 71-119 (198)
17 5Z98_B Apolipoprotein B mRNA e 93.7 0.32 3.7E-06 37.2 5.1 48 34-96 54-102 (185)
18 PF18750.5 ; SNAD4 ; Secreted N 93.3 0.44 5.1E-06 32.3 4.8 49 33-96 31-79 (130)
19 5W3V_A Apobec3H; cytidine deam 93.2 0.31 3.6E-06 39.0 4.5 46 36-96 56-102 (215)
20 PF14428.10 ; DddA-like ; Doubl 93.1 0.64 7.4E-06 34.8 5.8 67 30-119 69-137 (137)
21 PF18778.5 ; NAD1 ; Novel AID A 92.3 0.49 5.6E-06 35.6 4.3 46 36-96 53-102 (179)
22 8EDJ_A DNA dC->dU-editing enzy 92.3 0.46 5.3E-06 40.8 4.7 50 31-95 255-304 (386)
23 6BWY_E Protection of telomeres 92.3 0.52 6E-06 39.7 4.9 52 30-96 228-280 (361)
24 8EDJ_A DNA dC->dU-editing enzy 92.2 0.56 6.5E-06 40.3 5.0 46 36-96 72-119 (386)
25 7DC9_D Guanosine deaminase; de 92.0 0.72 8.3E-06 32.6 4.6 43 34-91 54-96 (161)
26 PF14437.10 ; MafB19-deam ; Maf 91.9 0.75 8.6E-06 31.2 4.5 46 31-91 47-92 (148)
27 PF08210.15 ; APOBEC_N ; APOBEC 91.8 1.1 1.3E-05 32.7 5.5 49 34-96 45-96 (171)
28 6X91_G Maltodextrin-binding pr 91.6 0.99 1.1E-05 38.7 5.8 50 34-96 416-465 (593)
29 7FH9_A CMP/dCMP-type deaminase 91.4 0.78 9.1E-06 31.5 4.2 42 33-91 64-105 (142)
30 2A8N_B cytidine and deoxycytid 91.1 0.89 1E-05 31.0 4.2 41 36-91 53-93 (144)
31 PF00383.27 ; dCMP_cyt_deam_1 ; 90.9 1.3 1.5E-05 27.2 4.4 44 33-91 51-94 (103)
32 8CX0_A DNA dC->dU-editing enzy 90.9 1 1.2E-05 40.1 5.3 48 36-96 65-112 (421)
33 5CQI_A DNA dC-dU-editing enzym 90.8 0.83 9.6E-06 35.3 4.3 48 34-96 58-108 (186)
34 8CX0_A DNA dC->dU-editing enzy 90.6 1.1 1.3E-05 39.8 5.3 47 36-96 257-303 (421)
35 4P9C_E Deoxycytidylate deamina 90.6 1.1 1.3E-05 30.2 4.3 43 32-91 66-108 (138)
36 1WKQ_B Guanine deaminase; Guan 90.1 1.6 1.8E-05 31.3 4.9 43 34-91 59-101 (164)
37 5JFY_C Deoxycytidine deaminase 89.5 1.6 1.9E-05 29.5 4.4 41 36-91 66-106 (139)
38 1WWR_D tRNA adenosine deaminas 89.5 1.6 1.8E-05 31.6 4.5 44 33-91 69-112 (171)
39 2B3J_B tRNA adenosine deaminas 89.4 1.7 1.9E-05 29.9 4.4 41 36-91 56-96 (159)
40 2NX8_A TRNA-specific adenosine 89.3 1.6 1.8E-05 31.6 4.5 50 27-91 52-105 (179)
41 5XKR_D CMP/dCMP deaminase, zin 89.1 1.5 1.8E-05 30.3 4.1 43 34-91 54-96 (159)
42 2G84_B Cytidine and deoxycytid 88.9 1.9 2.2E-05 32.2 4.7 43 34-91 77-124 (197)
43 PF14354.10 ; Lar_restr_allev ; 88.8 0.31 3.6E-06 27.0 0.5 10 76-85 1-10 (58)
44 2W4L_D DEOXYCYTIDYLATE DEAMINA 88.8 1.5 1.7E-05 32.3 4.1 39 34-91 79-117 (178)
45 1Z3A_A tRNA-specific adenosine 88.5 1.8 2.1E-05 30.4 4.2 41 36-91 58-98 (168)
46 PF18769.5 ; APOBEC1 ; APOBEC1 88.3 2.9 3.4E-05 27.3 4.8 47 34-95 16-64 (101)
47 7CPH_A tRNA-specific adenosine 87.9 2.8 3.2E-05 29.1 4.7 47 30-91 53-99 (167)
48 PF18772.5 ; APOBEC2 ; APOBEC2 87.8 2.7 3.1E-05 31.1 4.9 49 33-96 47-95 (177)
49 2Z3H_D Blasticidin-S deaminase 87.6 4.1 4.7E-05 28.0 5.4 59 31-105 49-110 (130)
50 2KDX_A Hydrogenase/urease nick 86.9 2.4 2.8E-05 29.5 4.0 54 32-85 36-97 (119)
51 1UWZ_A CYTIDINE DEAMINASE; CYT 86.8 4.3 5E-05 27.8 5.1 62 31-105 48-109 (136)
52 PF18771.5 ; APOBEC3 ; APOBEC3 86.6 4.3 5E-05 28.0 5.1 49 33-96 29-78 (135)
53 2HVW_A deoxycytidylate deamina 86.4 2.8 3.2E-05 31.2 4.3 42 33-91 102-143 (184)
54 1P6O_B Cytosine deaminase; cyt 85.9 3.5 4.1E-05 29.1 4.5 43 33-91 62-104 (161)
55 PF14441.10 ; OTT_1508_deam ; O 85.2 4 4.7E-05 25.3 4.0 38 36-91 2-39 (64)
56 3B8F_D Putative Blasticidin S 85.2 5.6 6.4E-05 28.0 5.1 48 28-91 44-99 (142)
57 5AUN_A Probable hydrogenase ni 85.1 0.95 1.1E-05 33.7 1.4 69 32-100 34-129 (139)
58 PF18775.5 ; APOBEC4 ; APOBEC4 85.0 2.1 2.5E-05 29.2 3.0 26 75-100 6-34 (80)
59 PF14439.10 ; Bd3614-deam ; Bd3 84.6 4.7 5.5E-05 25.5 4.2 45 32-91 33-78 (110)
60 6KW6_B cytidine deaminase; HYD 84.1 5 5.7E-05 26.8 4.3 52 28-91 53-104 (135)
61 6U08_G Double-stranded DNA-spe 83.9 3.9 4.5E-05 31.1 4.2 68 17-101 77-144 (178)
62 6VPC_F t-RNA adenine deaminase 82.2 4.9 5.6E-05 31.7 4.3 43 34-91 83-125 (227)
63 3R2N_D Cytidine deaminase; Str 81.6 8.3 9.6E-05 26.7 4.8 49 31-91 55-103 (138)
64 2FR5_D Cytidine deaminase; CYT 80.7 12 0.00013 26.1 5.3 62 28-105 57-121 (146)
65 7BV5_A tRNA-specific adenosine 80.7 6 6.9E-05 31.2 4.3 43 34-91 55-101 (253)
66 4WIG_A Cytidine deaminase; cyt 80.2 7.3 8.5E-05 26.3 4.1 49 31-91 51-99 (133)
67 1VQ2_A DEOXYCYTIDYLATE DEAMINA 80.0 8.3 9.6E-05 29.8 4.8 61 14-91 82-142 (193)
68 PF14440.10 ; XOO_2897-deam ; X 79.7 4.9 5.7E-05 26.0 3.0 37 36-91 26-65 (97)
69 7ZOB_D Metagenomic cytidine de 79.5 15 0.00017 26.1 5.5 65 28-105 45-111 (140)
70 3MPZ_D Cytidine deaminase; SSG 78.5 8.2 9.5E-05 27.6 4.1 48 28-91 67-118 (150)
71 PF01155.23 ; HypA ; Hydrogenas 78.4 2.8 3.2E-05 29.0 1.7 69 32-100 34-108 (112)
72 7JTU_A SsdA; Toxin, Immunity, 78.2 18 0.0002 28.0 6.0 64 53-121 93-158 (165)
73 7NZ9_A tRNA-specific adenosine 78.0 7.1 8.2E-05 28.7 3.7 41 36-91 71-117 (191)
74 6L2M_A Nucleoside deaminase fa 76.5 12 0.00013 26.3 4.3 43 34-91 52-94 (152)
75 6L08_A Cytidine deaminase 1; p 75.8 15 0.00018 30.6 5.5 58 30-105 72-129 (308)
76 PF18785.5 ; Inv-AAD ; Inverteb 72.6 18 0.00021 24.7 4.4 43 34-91 24-80 (129)
77 PF07295.15 ; DUF1451 ; Zinc-ri 71.8 4 4.7E-05 30.6 1.2 16 70-85 121-139 (147)
78 3OJ6_D Blasticidin-S deaminase 71.5 25 0.00028 25.8 5.1 45 31-91 73-122 (158)
79 2HXV_A Diaminohydroxyphosphori 67.2 24 0.00028 29.2 4.7 48 27-91 52-105 (360)
80 2KOK_A arsenate reductase; ars 66.5 17 0.0002 23.7 3.2 30 72-102 6-35 (120)
81 2JNV_A NifU-like protein 1, ch 63.2 14 0.00016 25.1 2.4 46 35-84 4-49 (91)
82 6K63_A Cytidine deaminase; Kle 59.2 35 0.0004 28.3 4.4 51 31-99 97-147 (294)
83 4EG2_D Cytidine deaminase; Cyt 57.2 42 0.00049 28.3 4.6 52 30-99 99-150 (298)
84 1XG8_A hypothetical protein SA 56.2 52 0.00061 22.4 4.2 44 64-107 1-56 (111)
85 8DQB_A 3-dehydroquinate dehydr 55.7 38 0.00044 28.1 4.0 44 28-91 50-99 (375)
86 2B3Z_B Riboflavin biosynthesis 54.6 45 0.00052 27.7 4.3 44 27-90 52-101 (373)
87 PF18749.5 ; SNAD3 ; Secreted N 54.4 1E+02 0.0012 28.6 6.8 62 31-105 98-170 (380)
88 5XOB_Z tRNA(Ile2) 2-agmatinylc 53.4 15 0.00018 33.5 1.7 49 39-88 308-359 (420)
89 3G8Q_C Predicted RNA-binding p 53.2 38 0.00044 27.3 3.6 39 31-91 39-77 (278)
90 PF00578.25 ; AhpC-TSA ; AhpC/T 50.4 39 0.00045 20.9 2.7 40 53-96 12-56 (127)
91 3KTB_A Arsenical resistance op 50.4 71 0.00082 20.8 4.0 37 67-103 1-50 (106)
92 PF20097.3 ; DUF6487 ; Domain o 50.2 5.6 6.4E-05 25.5 -1.1 10 81-90 1-10 (69)
93 3DMO_B Cytidine deaminase; BUR 50.2 30 0.00035 24.8 2.4 29 76-105 91-119 (138)
94 2GMG_A hypothetical protein Pf 50.0 25 0.00028 25.3 1.9 49 37-85 41-91 (105)
95 PF11239.12 ; DUF3040 ; Protein 49.4 24 0.00028 24.6 1.8 19 35-53 4-22 (79)
96 PF11290.12 ; DUF3090 ; Protein 48.5 9.6 0.00011 31.3 -0.3 13 76-88 170-182 (189)
97 1WJK_A C330018D20rik protein; 45.6 96 0.0011 18.0 3.9 36 69-105 15-50 (100)
98 PF04777.17 ; Evr1_Alr ; Erv1 / 44.1 38 0.00044 21.5 2.0 17 80-96 38-54 (93)
99 PF13652.10 ; QSregVF ; Putativ 43.7 81 0.00094 21.8 3.6 31 84-114 72-106 (110)
100 8AW3_2 Deaminase, putative; AD 43.5 60 0.00069 25.9 3.3 41 36-91 90-146 (221)
101 7PQ8_A Thiol:disulfide interch 43.2 1E+02 0.0012 22.3 4.2 49 54-102 1-55 (202)
102 4ZIL_B DSBA oxidoreductase; Ox 43.1 73 0.00084 23.7 3.5 31 72-102 10-43 (220)
103 3HA9_A uncharacterized Thiored 43.0 74 0.00086 20.6 3.2 37 53-93 24-61 (165)
104 6WIS_A DUF411 domain-containin 42.0 95 0.0011 23.2 4.0 33 70-103 2-34 (126)
105 2M5O_A NFU1 iron-sulfur cluste 41.8 58 0.00067 22.8 2.7 46 35-84 17-63 (97)
106 3L78_A Regulatory protein spx; 41.7 78 0.0009 20.1 3.1 30 72-102 1-30 (120)
107 7BV5_D tRNA-specific adenosine 41.6 64 0.00074 26.9 3.3 38 36-88 222-267 (328)
108 7DRY_A CMP/dCMP-type deaminase 40.7 1.9E+02 0.0022 23.4 5.7 57 34-105 59-136 (230)
109 PF04805.16 ; Pox_E10 ; E10-lik 40.4 49 0.00056 20.9 2.0 18 80-97 17-34 (70)
110 PF08063.16 ; PADR1_Zn_ribbon ; 40.0 21 0.00025 21.2 0.3 8 78-85 2-9 (42)
111 PF11238.12 ; DUF3039 ; Protein 39.7 38 0.00043 23.1 1.5 15 76-90 41-55 (56)
112 1L8D_B DNA double-strand break 38.2 10 0.00012 25.4 -1.3 11 80-90 49-59 (112)
113 3ZPG_A RIBD; REDUCTASE, DEAMIN 37.5 1.4E+02 0.0016 25.1 4.7 44 28-91 67-116 (382)
114 1XHJ_A Nitrogen Fixation Prote 37.1 82 0.00095 21.5 2.8 53 35-91 6-58 (88)
115 4GRF_A Putative thiol-disulfid 36.9 73 0.00085 20.2 2.4 37 53-93 16-53 (152)
116 1TTZ_A conserved hypothetical 36.8 1.3E+02 0.0015 17.1 3.2 30 72-101 2-31 (87)
117 3GWL_A FAD-linked sulfhydryl o 35.5 67 0.00078 21.3 2.2 18 80-97 46-63 (106)
118 2F9S_A Thiol-disulfide oxidore 34.2 72 0.00083 21.2 2.1 37 53-93 13-50 (151)
119 2H30_A Peptide methionine sulf 33.9 1.6E+02 0.0019 19.0 3.7 37 53-93 25-62 (164)
120 4OD7_B Thiol:disulfide interch 33.6 1.8E+02 0.0021 20.2 4.1 47 55-102 7-61 (190)
121 2Z51_A NifU-like protein 2, ch 33.5 1.9E+02 0.0023 21.5 4.5 53 37-94 86-139 (154)
122 2P31_A Glutathione peroxidase 33.1 85 0.00099 21.3 2.4 37 53-93 36-73 (181)
123 3EUR_A uncharacterized protein 32.8 1.7E+02 0.002 18.7 3.6 37 53-93 18-55 (142)
124 3D5J_B Glutaredoxin-2, mitocho 32.7 93 0.0011 17.7 2.2 25 69-93 18-42 (112)
125 3NPD_A putative secreted prote 32.3 1.6E+02 0.0018 20.8 3.7 34 84-117 74-109 (118)
126 7NCV_A Glutaredoxin, CPYC type 32.1 1.4E+02 0.0017 16.1 3.5 35 69-103 15-49 (107)
127 2D30_B cytidine deaminase; Pur 31.6 54 0.00063 24.1 1.4 15 78-92 92-106 (141)
128 7DS1_A CMP/dCMP-type deaminase 31.6 2.4E+02 0.0028 22.5 4.9 41 34-90 59-118 (196)
129 6EEZ_A DsbA-like disulfide oxi 31.4 1.5E+02 0.0017 20.3 3.3 31 72-102 36-69 (190)
130 6JLU_w PsbW; PSII-FCP supercom 31.3 36 0.00042 23.2 0.4 34 67-100 4-43 (51)
131 3GV1_B Disulfide interchange p 31.1 1.2E+02 0.0013 19.3 2.6 23 81-103 26-48 (147)
132 3HCZ_A Possible thiol-disulfid 30.8 2.2E+02 0.0026 17.9 3.8 37 53-93 18-55 (148)
133 PF01106.21 ; NifU ; NifU-like 30.7 2E+02 0.0023 17.3 3.6 37 55-95 15-59 (67)
134 3RDW_A Putative arsenate reduc 30.7 1.4E+02 0.0016 19.3 3.0 32 71-103 5-36 (121)
135 5GOX_A DNA repair protein RAD5 30.5 22 0.00025 25.7 -0.8 10 79-88 99-108 (186)
136 2CQ9_A GLRX2 protein; glutared 30.2 1.8E+02 0.0021 18.1 3.4 34 69-103 25-58 (130)
137 2KHP_A GLUTAREDOXIN; Glutaredo 30.1 1.6E+02 0.0018 16.0 2.9 34 67-101 2-35 (92)
138 PF19796.3 ; DUF6280 ; Family o 29.6 88 0.001 24.1 2.2 18 77-94 53-70 (88)
139 4IHU_B Isomerase DsbG; thiored 29.6 2.6E+02 0.003 20.6 4.5 49 54-102 12-73 (224)
140 4HDE_A SCO1/SenC family lipopr 29.2 1.7E+02 0.002 18.7 3.2 40 53-96 19-63 (170)
141 PF18745.5 ; SNAD2 ; Secreted N 29.2 72 0.00083 26.2 1.8 37 34-84 79-123 (200)
142 6MWS_A Glutaredoxin-1; Glutare 29.0 1.2E+02 0.0013 17.4 2.2 25 69-93 20-44 (115)
143 PF01323.24 ; DSBA ; DSBA-like 28.8 1.3E+02 0.0015 20.6 2.8 31 72-102 1-38 (201)
144 PF07315.15 ; DUF1462 ; Protein 28.8 1E+02 0.0012 20.3 2.1 31 75-105 3-44 (88)
145 3GKX_A Putative ArsC family re 28.8 1E+02 0.0012 19.6 2.1 24 72-95 5-28 (120)
146 2FY6_A Peptide methionine sulf 28.6 2E+02 0.0023 17.9 3.3 37 53-93 10-47 (143)
147 1ABA_A GLUTAREDOXIN; ELECTRON 28.5 1.6E+02 0.0018 16.8 2.7 31 72-103 1-35 (87)
148 4WF5_B Thiol:disulfide interch 28.3 1.3E+02 0.0015 20.9 2.7 31 72-102 21-59 (189)
149 1NM3_B Protein HI0572; hybrid, 28.3 73 0.00084 22.7 1.5 41 53-93 16-59 (241)
150 PF04423.18 ; Rad50_zn_hook ; R 28.2 18 0.00021 21.1 -1.3 12 79-90 22-33 (54)
151 2P5Q_A Glutathione peroxidase 27.8 1.3E+02 0.0015 19.0 2.4 37 53-93 19-56 (170)
152 PF13453.10 ; zf-TFIIB ; Transc 27.7 9.6 0.00011 22.2 -2.5 20 81-101 2-21 (42)
153 3EWL_A uncharacterized conserv 27.6 1.3E+02 0.0015 18.9 2.4 37 53-93 14-51 (142)
154 4MJE_A Probable glutaredoxin s 27.6 1.8E+02 0.0021 17.1 2.9 29 72-101 17-45 (99)
155 2E7P_C Glutaredoxin; THIOREDOX 27.4 1.3E+02 0.0015 17.4 2.2 25 69-93 18-42 (116)
156 6ZFF_A DNA double-strand break 27.2 28 0.00033 25.0 -0.7 15 80-94 67-81 (140)
157 5VNY_A Lethal (2) giant discs 27.1 44 0.00051 21.7 0.2 16 69-84 50-65 (66)
158 2JVN_A Poly [ADP-ribose] polym 27.0 50 0.00058 24.2 0.5 13 73-85 55-67 (126)
159 PF13778.10 ; DUF4174 ; Domain 27.0 67 0.00078 20.3 1.0 16 81-96 21-36 (112)
160 1RW1_A conserved hypothetical 26.9 88 0.001 20.1 1.6 20 72-91 1-20 (114)
161 PF18048.5 ; TRAF6_Z2 ; TNF rec 26.7 19 0.00022 19.6 -1.3 9 80-88 5-13 (27)
162 3IOS_A Disulfide bond forming 26.7 1.6E+02 0.0019 19.4 2.8 37 53-93 26-63 (150)
163 PF04606.16 ; Ogr_Delta ; Ogr/D 26.6 24 0.00028 20.5 -1.0 9 80-88 1-9 (47)
164 3P7X_C Probable thiol peroxida 26.6 1.2E+02 0.0014 20.1 2.3 37 53-93 33-71 (166)
165 PF00462.28 ; Glutaredoxin ; Gl 26.5 1.2E+02 0.0014 13.5 2.3 28 73-101 1-28 (61)
166 4Z7X_B MdbA; thiol-disulfide o 26.4 3E+02 0.0035 20.6 4.4 48 55-102 37-95 (238)
167 6MN3_B Aminoglycoside N(3)-ace 26.3 1.9E+02 0.0022 23.7 3.7 52 39-90 196-258 (260)
168 1Z3E_A Regulatory protein spx; 26.2 1.7E+02 0.0019 19.3 2.8 30 72-102 2-31 (132)
169 3KIJ_C Probable glutathione pe 26.2 1.3E+02 0.0015 20.0 2.3 37 53-93 25-62 (180)
170 4NMU_B Thiol-disulfide oxidore 26.1 1.5E+02 0.0017 19.0 2.4 37 53-93 22-59 (147)
171 PF10825.12 ; DUF2752 ; Protein 26.0 45 0.00051 21.4 0.1 6 80-85 10-15 (49)
172 PF18279.5 ; zf-WRNIP1_ubi ; We 26.0 33 0.00038 17.5 -0.4 14 77-90 1-14 (21)
173 2LQO_A Putative glutaredoxin R 25.9 1.5E+02 0.0018 16.5 2.3 26 68-93 1-26 (92)
174 PF15643.10 ; Tox-PL-2 ; Papain 25.6 1.2E+02 0.0014 22.4 2.2 22 77-98 14-35 (101)
175 PF14421.10 ; LmjF365940-deam ; 25.5 3E+02 0.0035 26.0 5.1 38 77-114 289-326 (329)
176 1NUI_B DNA primase/helicase; z 25.4 44 0.0005 24.1 -0.0 6 80-85 16-21 (255)
177 1H75_A GLUTAREDOXIN-LIKE PROTE 25.4 1.4E+02 0.0017 17.2 2.2 23 71-93 1-23 (81)
178 6BO0_A MdbA protein; MdbA, dis 25.3 2.1E+02 0.0024 20.3 3.3 31 72-102 40-77 (200)
179 3GWN_B Probable FAD-linked sul 25.1 1.1E+02 0.0012 20.9 1.8 16 80-95 48-63 (114)
180 PF04267.16 ; SoxD ; Sarcosine 24.8 40 0.00046 24.4 -0.3 8 80-87 3-10 (82)
181 3KGK_A Arsenical resistance op 24.7 2.7E+02 0.0032 19.4 3.8 33 71-103 2-47 (110)
182 1JR8_A Erv2 PROTEIN, mitochond 24.4 1.1E+02 0.0013 20.9 1.7 20 80-99 50-69 (117)
183 2RT9_A F-box only protein 43; 24.0 51 0.00059 18.2 0.1 19 56-85 1-19 (59)
184 8AP6_c subunit-8; ATP synthase 24.0 55 0.00064 26.3 0.3 23 37-59 80-104 (114)
185 4E0H_A Mitochondrial FAD-linke 24.0 1.2E+02 0.0014 19.2 1.8 16 80-95 46-61 (106)
186 3IPZ_A Monothiol glutaredoxin- 23.8 2.4E+02 0.0028 15.9 2.9 24 79-103 31-54 (109)
187 1R4W_D Glutathione S-transfera 23.7 1.9E+02 0.0022 20.8 2.9 31 72-102 7-40 (226)
188 PF03960.19 ; ArsC ; ArsC famil 23.7 1.3E+02 0.0015 19.2 1.9 19 77-95 2-20 (116)
189 2M6O_A Uncharacterized protein 23.5 62 0.00072 19.2 0.4 10 76-85 24-33 (48)
190 3ZYW_A GLUTAREDOXIN-3; METAL B 23.3 2.6E+02 0.003 16.2 3.3 24 79-103 29-52 (111)
191 3IC4_A Glutaredoxin (Grx-1); g 23.1 1.8E+02 0.0021 15.8 2.2 22 72-93 13-34 (92)
192 PF20833.1 ; RNase_E_G_Thio ; R 23.1 57 0.00065 19.4 0.2 6 80-85 1-6 (86)
193 3TK0_A FAD-linked sulfhydryl o 22.9 1.3E+02 0.0015 20.2 1.8 16 80-95 62-77 (126)
194 4K9Z_A Putative thiol-disulfid 22.5 2.5E+02 0.0029 18.6 3.1 37 53-93 34-71 (168)
195 3KZQ_D Putative uncharacterize 22.4 2.9E+02 0.0033 19.6 3.5 31 72-102 4-39 (208)
196 4MZC_A Glutaredoxin; glutathio 22.3 1.6E+02 0.0018 16.4 1.9 25 69-93 17-41 (111)
197 2IMF_A 2-hydroxychromene-2-car 22.3 2.7E+02 0.0031 19.5 3.4 31 72-102 2-35 (203)
198 PF19148.4 ; DUF5830 ; Family o 22.3 1.5E+02 0.0017 23.9 2.2 48 39-88 37-86 (114)
199 2RLI_A SCO2 protein homolog, m 22.0 2.2E+02 0.0025 18.3 2.7 37 53-93 13-51 (171)
200 1T3B_A Thiol:disulfide interch 22.0 3.9E+02 0.0045 19.7 4.2 58 39-101 60-120 (211)
201 3U5S_A FAD-linked sulfhydryl o 21.8 1.5E+02 0.0018 20.0 2.1 17 80-96 62-78 (126)
202 2YZH_B Probable thiol peroxida 21.8 2.9E+02 0.0034 19.3 3.4 37 53-93 34-72 (171)
203 PF13905.10 ; Thioredoxin_8 ; T 21.8 2.3E+02 0.0027 16.5 2.6 24 70-93 1-25 (97)
204 1XZO_A Hypothetical protein yp 21.7 1.9E+02 0.0021 18.9 2.3 37 53-93 20-58 (174)
205 PF10865.12 ; DUF2703 ; Domain 21.5 2.8E+02 0.0032 19.9 3.4 31 72-102 2-46 (116)
206 3W4Y_C Mitochondrial FAD-linke 21.5 1.5E+02 0.0017 20.1 1.9 16 80-95 60-75 (120)
207 6L08_A Cytidine deaminase 1; p 21.4 1.2E+02 0.0014 25.5 1.8 23 78-102 275-297 (308)
208 6DXN_B Thiol:disulfide interch 21.3 3.6E+02 0.0042 18.5 3.7 41 63-103 2-61 (192)
209 2LUS_A Thioredoxion; Cr-TRP16, 21.2 1.4E+02 0.0016 18.9 1.6 25 69-93 25-50 (143)
210 PF04194.17 ; PDCD2_C ; Program 21.2 1.9E+02 0.0022 20.8 2.5 33 39-85 5-52 (102)
211 PF17302.6 ; DUF5351 ; Family o 21.2 76 0.00088 18.5 0.4 14 72-85 11-24 (29)
212 4BPY_A SCO PROTEIN; COPPER HOM 21.0 2E+02 0.0023 19.3 2.4 38 53-93 19-58 (175)
213 4RQR_A Glutaredoxin-1; REDOX-A 20.9 1.9E+02 0.0022 16.6 2.1 25 69-93 14-38 (109)
214 1Z5Y_E Thiol:disulfide interch 20.9 3.9E+02 0.0045 17.3 3.7 38 53-93 12-50 (149)
215 PF08273.16 ; Prim_Zn_Ribbon ; 20.9 63 0.00073 18.3 0.1 6 80-85 5-10 (36)
216 4ML1_C DsbP; DsbC, DsbG, foldi 20.8 2.8E+02 0.0033 20.7 3.4 34 69-103 94-127 (217)
217 3GMF_A Protein-disulfide isome 20.7 2.7E+02 0.0031 19.9 3.1 31 72-102 18-56 (205)
218 4DKK_A Double-stranded RNA-bin 20.5 3.6E+02 0.0042 19.5 3.8 27 77-103 37-66 (115)
219 2V1M_A GLUTATHIONE PEROXIDASE; 20.4 1.2E+02 0.0014 19.2 1.2 37 53-93 18-55 (169)
220 2LRT_A Uncharacterized protein 20.4 2.4E+02 0.0028 18.7 2.7 37 53-93 22-59 (152)
221 2RIQ_A Poly [ADP-ribose] polym 20.3 73 0.00085 24.9 0.3 13 73-85 73-85 (160)
222 1TH5_A NifU1; IRON-SULFUR CLUS 20.2 3.9E+02 0.0045 17.0 4.6 55 35-94 3-58 (74)
223 3IXR_A Bacterioferritin comigr 20.2 2.2E+02 0.0025 19.7 2.5 37 53-93 38-76 (179)
224 4P3Y_B Thiol:disulfide interch 20.2 2.4E+02 0.0028 20.3 2.8 25 79-103 31-58 (182)
225 3L9V_E Putative thiol-disulfid 20.1 2.4E+02 0.0028 19.4 2.7 32 72-103 17-54 (189)
226 1EU8_A TREHALOSE/MALTOSE BINDI 20.1 5.7E+02 0.0066 19.8 4.9 37 54-103 1-40 (409)
No 1
>PF14427.10 ; Pput2613-deam ; Pput_2613-like deaminase
Probab=98.91 E-value=3.7e-09 Score=76.29 Aligned_cols=60 Identities=20% Similarity=0.594 Sum_probs=51.4 Template_Neff=7.400
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecCC
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTDS 106 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~~ 106 (122)
|...-...|+|+|+++++.-.- |-+|.|.+ ..|||+.|...|..||.+.+++|.|.|.+.
T Consensus 43 ~p~~~~~thTE~r~~~~~~l~~------Gd~l~i~G-------------~~~pc~~c~~~m~~~a~~~g~~i~y~w~~~ 102 (117)
T Q1IFR6_PSEE4/1 43 FPRSSLATHTEARAVKQIPLQQ------GDVMVIDG-------------QYPPCPSCKGKMNRASTETGAKIQYTWPEN 102 (117)
T ss_pred CCccccchhhhHHHhhcCCCCC------CCEEEEec-------------cCCCCcccchHHHHHHHHcCCEEEEEcCCC
Confidence 3344456799999999886433 88999999 999999999999999999999999999874
No 2
>5W0R_B MBP fused activation-induced cytidine deaminase; Class switch recombination, Cytidine deaminase, HYDROLASE; HET: CAC; 2.4A {Escherichia coli O157:H7}
Probab=95.64 E-value=0.053 Score=45.01 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred ccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 32 GATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
....|+|.++|++|.... ...-.--+++|-. ...||+.|-..+.+|.+++.
T Consensus 420 ~~~~hae~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~sPC~~C~~~i~~~~~~~~ 470 (549)
T 5W0R_B 420 KNGCHVALLFLRYISDWD-LDPGRCYRVTWFT-------------SWSPCYDCARHVADFLRGNP 470 (549)
T ss_dssp BTTBCHHHHHHHHHHSSC-CCSSSCEEEEEEE-------------EECCCHHHHHHHHHHHHHCT
T ss_pred CCCCcHHHHHHHHHHhcc-CCCCCcEEEEEEE-------------ecCCcHHHHHHHHHHHHhCC
No 3
>2NYT_A Probable C->U-editing enzyme APOBEC-2; cytidine deaminase, zinc-ion binding, APOBEC, HYDROLASE; 2.5A {Homo sapiens} SCOP: l.1.1.1, c.97.1.6
Probab=95.39 E-value=0.071 Score=41.28 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
...|+|..+|+++..........+-+|-|.- .||+.|-..+.+|.+++.
T Consensus 61 ~~~HAE~~~l~~~~~~l~~~~~~~itly~s~---------------sPC~~Ca~~i~~fl~~~~ 109 (190)
T 2NYT_A 61 AAAHAEEAFFNTILPAFDPALRYNVTWYVSS---------------SPCAACADRIIKTLSKTK 109 (190)
T ss_pred CcCcHHHHHHHHHHHHcChhhccCcEEEEec---------------CCcHHHHHHHHHHHHhCC
No 4
>PF18782.5 ; NAD2 ; Novel AID APOBEC clade 2
Probab=95.07 E-value=0.1 Score=38.63 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred chHHHHHHHHHhh-cccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHLDTS-TYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~le~~-~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|+.+... .+..++.+.+|-++- .||+.|...+.+|..++.
T Consensus 52 HAE~~~l~~~~~~~~~~~~~~~~tly~t~---------------sPC~~C~~~i~~fl~~~~ 98 (173)
T H0VE76_CAVPO/3 52 HAELSFLSWFHDTELSFDENYKVTWYMSW---------------SPCPECAKEIVTFLDNHH 98 (173)
T ss_pred hHHHHHHHHHhhcCCCCCCCCeEEEEEEc---------------CCCHHHHHHHHHHHHHCC
No 5
>PF18774.5 ; APOBEC4_like ; APOBEC4-like -AID/APOBEC-deaminase
Probab=95.06 E-value=0.072 Score=38.15 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCcccCCCCcCCCCCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 14 GGLWNHDWGSRKAPFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 14 ~~~~~~t~Ga~~~~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
|+.|....=+....+ -...+.|+|..+|..+... ...+.+.+| +.- .||+.|...+.+|+.
T Consensus 10 ~~~~p~~~~~~~~~~-~~~~~~HAE~~ai~~~~~~--~~~~~~~~l-~~~---------------sPC~~C~~~l~~fl~ 70 (117)
T A0A1X7STY1_AMP 10 FTNSGTLLYARGTIY-WSEEYKHAEEVFIDMTRDE--DIRNIKIIW-IKN---------------SPCCWCADKLIEHFS 70 (117)
T ss_pred ccCCCceEEEcCcEE-EeCCCCcHHHHHHHHhccc--CcCCcEEEE-eec---------------CChHHHHHHHHHHHH
Q ss_pred HcC
Q FD01845416_041 94 NKK 96 (122)
Q Consensus 94 ~nk 96 (122)
+.+
T Consensus 71 ~~~ 73 (117)
T A0A1X7STY1_AMP 71 KKY 73 (117)
T ss_pred HcC
No 6
>5W2M_A DNA dC->dU-editing enzyme APOBEC-3F; APOBEC, DNA BINDING PROTEIN; 3.7A {Homo sapiens}
Probab=94.85 E-value=0.13 Score=39.18 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cccchHHHHHHHHHhhcc-cccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTY-SGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~-~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
+..|+|..+|+.+....- .....+.+|-++- .||+.|-+.+.+|.+++.
T Consensus 57 ~~~HAE~~~i~~~~~~~~~~~~~~~~tly~s~---------------sPC~~Ca~~ii~~l~~~~ 106 (184)
T 5W2M_A 57 THCHAERCFLSWFCDDILSPNTNYEVTWYTSW---------------SPCPECAGEVAEFLARHS 106 (184)
T ss_pred CCCCHHHHHHHHHhhccCCCCCCeeEEEEEEc---------------CCCHHHHHHHHHHHHHCC
No 7
>1R5T_C Cytidine deaminase; Zinc Dependent Deaminase, RNA editing, APOBEC-1 related protein, HYDROLASE; 2.0A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=94.83 E-value=0.17 Score=34.67 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCcccccchHHHHHHHHHhhccccc-ccCCeEEEeeccccccCCeeeccC---CCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGK-LSGSTLEMHSLGQMMNNGTKHLSE---IPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~-L~GstLeI~S~~~f~ng~~~~~~g---lpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
.+......|+|+..|..+... ...+ +.+..|-... + ..||..|.+.|.+|.. .++.|.|..
T Consensus 53 ~~~~~~~~hae~~ai~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~Pc~~C~~~i~~~~~-~~~~i~~~~ 117 (142)
T 1R5T_C 53 NASYSNCICAERSAMIQVLMA-GHRSGWKCMVICGDS-------------EDQCVSPCGVCRQFINEFVV-KDFPIVMLN 117 (142)
T ss_dssp CSSGGGCBCHHHHHHHHHHHT-TCCSCCCEEEEEESC-------------SSSCCCCCHHHHHHHHTTSC-TTCEEEEEC
T ss_pred eCCCCCCccHHHHHHHHHHHc-CCCCCeEEEEEEcCC-------------CccccCCCHHHHHHHHHhCC-CCCeEEEEc
Q ss_pred cC
Q FD01845416_041 104 TD 105 (122)
Q Consensus 104 ~~ 105 (122)
.+
T Consensus 118 ~~ 119 (142)
T 1R5T_C 118 ST 119 (142)
T ss_dssp TT
T ss_pred CC
No 8
>PF14431.10 ; YwqJ-deaminase ; YwqJ-like deaminase
Probab=94.74 E-value=0.11 Score=37.97 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred ccccchHHHHHHHHHhhccccc----------------ccCCeEEEeecccccc---CCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 32 GATGHSEAKLLEHLDTSTYSGK----------------LSGSTLEMHSLGQMMN---NGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~~~~~----------------L~GstLeI~S~~~f~n---g~~~~~~glpPC~~C~~~M~~F 91 (122)
+...++|.++|..+-...+... |.|..+.+.-...--+ +....-...+||+.|...|..|
T Consensus 70 ~~g~cAEv~als~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~~~pC~~C~~~l~~l 148 (150)
T A4X268_SALTO/7 70 GHGKCAEVALVSDQIYRLEEEWRQAGEPGALEQYALNALSGAKVVTHQVRTGWDEAGVKHDLGHYRLPCRSCRSLLPQF 148 (150)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCeEEEEEccCCccccCCCcCCCcccCCCHhHHHHHHHh
No 9
>PF14424.10 ; Toxin-deaminase ; The BURPS668_1122 family of deaminases
Probab=94.38 E-value=0.84 Score=27.98 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHc-CCEEEEEecC
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNK-KMNITYSWTD 105 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~n-km~ItY~~~~ 105 (122)
++|.+++..+..... .-..+.+.+.. ..++|..|...+.+|.... ++.+.....+
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (133)
T R6EP07_9FIRM/4 78 DTEAKLFEYFADLYE--KKPFKSITMLS-------------ERGMCDSCKGVMKQFSKQYPKVQINVISNK 133 (133)
T ss_pred cHHHHHHHHHHHHcC--CCCceEEEEEE-------------ecccCHHHHHHHHHHHHHCCCcEEEEEECC
No 10
>PF18767.5 ; AID ; Activation induced deaminase
Probab=94.30 E-value=0.16 Score=34.86 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEE
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNIT 100 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~It 100 (122)
...|+|..+|..+. +.... +.+-. .-.||+.|-..+.+|.+++. .++
T Consensus 3 ~~~HAE~~~l~~~~------~~~~~-~t~y~-------------s~SPC~~Ca~~i~~fl~~~~-~l~ 49 (89)
T A0A1X7VWN1_AMP 3 DSIHVVIQFIKDKP------LPSNN-TELWI-------------KKSPCSSCSSRLLDLYKFSP-KPT 49 (89)
T ss_pred CCCCHHHHHHhcCC------CCCCC-eEEEE-------------ecCCcHHHHHHHHHHHHHCC-CCE
No 11
>5K81_F Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G; APOBEC3G, Vif, HIV, APOBEC, HYDROLASE; 2.006A {Macaca mulatta} SCOP: c.97.1.6
Probab=94.29 E-value=0.24 Score=38.70 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred ccchHHHHHHHHHhh--cccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDTS--TYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~~--~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
..|+|..+|+.+... .......+.+|-|+- .||+.|-..+.+|.+++.
T Consensus 68 ~~HAE~~~l~~~~~~~~l~~~~~~~it~y~s~---------------sPC~~Ca~~l~~fl~~~~ 117 (196)
T 5K81_F 68 KYHPEMRFLRWFHKWRQLHHDQEYKVTWYVSW---------------SPCTRCANSVATFLAKDP 117 (196)
T ss_dssp GGSHHHHHHHHHHHHHHTSCSSCEEEEEEEEE---------------CCCHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCccEEEEEC---------------CCcHHHHHHHHHHHHHCC
No 12
>5HX4_A DNA dC->dU-editing enzyme APOBEC-3F; APOBEC3F, HYDROLASE; 1.92A {Homo sapiens} SCOP: c.97.1.6
Probab=94.17 E-value=0.2 Score=39.09 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred cccchHHHHHHHHHhhcc-cccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHc
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTY-SGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNK 95 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~-~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~n 95 (122)
...|+|..+|+++..... .....+.++-|+- .||+.|-..+.+|.+++
T Consensus 72 ~~~HAE~~~l~~~~~~~l~~~~~~~it~y~s~---------------sPC~~Ca~~i~~fl~~~ 120 (199)
T 5HX4_A 72 TGRHAERCFLSWFADDILSPNTNYEVTWYTSW---------------SPCPECAGEVAEFLARH 120 (199)
T ss_pred CCCcHHHHHHHHHHhcCCCCCCceeEEEEEec---------------CCCHHHHHHHHHHHHHC
No 13
>3V4K_B DNA dC->dU-editing enzyme APOBEC-3G; APOBEC3G, ANTIVIRAL DEFENSE, HOST-VIRUS INTERACTION, HYDROLASE, METAL-BINDING, Nucleus; 1.38A {Homo sapiens} SCOP: c.97.1.6
Probab=94.12 E-value=0.19 Score=39.64 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred cccchHHHHHHHHHhhcc-cccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTY-SGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~-~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
+..|+|..+|..+....- .....+.+|-++- .||+.|-..+.+|.+++.
T Consensus 77 ~~~HAE~~~l~~~~~~~l~~~~~~~itlY~s~---------------SPC~~Ca~~ii~f~~~~~ 126 (203)
T 3V4K_B 77 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTSW---------------SPCFSCAQEMAKFISKNK 126 (203)
T ss_pred CCCCHHHHHHHHhcccCCCcccCceEEEEEeC---------------CCcHHHHHHHHHHHHHCC
No 14
>2MZZ_A Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G variant; Vif-binding domain, Hydrolase, Antiviral protein; HET: ZN; NMR {artificial gene} SCOP: c.97.1.0
Probab=94.11 E-value=0.25 Score=37.47 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred ccccchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 32 GATGHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 32 g~~~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
....|+|..+|+.+.. ......+.|.+|-++- .||+.|-..+.+|..++.
T Consensus 50 ~~~~HAE~~~i~~~~~~~~~~~~~~~~tly~t~---------------sPC~~Ca~~l~~~~~~~~ 100 (180)
T 2MZZ_A 50 EDKYHPEMRFLSLVSKWKLHRDQEYEVTWYISW---------------SPCTKCARDMATFLQENT 100 (180)
T ss_dssp TCSSCTTTTTHHHHHHSCSCCCSCEEEEEEECS---------------SSHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhccCCCCCceeEEEEEEc---------------CCcHHHHHHHHHHHHHCC
No 15
>8E5D_A Double-stranded DNA deaminase toxin A; toxin, DNA binding, deaminase, TOXIN-DNA complex; 2.39A {Burkholderia cenocepacia}
Probab=93.85 E-value=0.73 Score=35.72 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred CCcCCCCCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEE
Q FD01845416_041 21 WGSRKAPFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNIT 100 (122)
Q Consensus 21 ~Ga~~~~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~It 100 (122)
+|-....|-......|.|.|+-.+|... .+...+|-|+- .--||+.|.+.+..+... +.+++
T Consensus 41 SG~~~~~~~~~~~a~HVE~kaA~~Mr~~----g~~~~~lvINn-------------~~GpC~~C~~~lp~~Lp~-G~~Lt 102 (139)
T 8E5D_A 41 SSGGPTPYPNYANAGHVAGQSALFMRDN----GISEGLVFHNN-------------PEGTCGFCVNMTETLLPE-NAKMT 102 (139)
T ss_pred cCCCCCCCCCcchhhchHHHHHHHHHHc----CCcEEEEEecC-------------CCCcCHHHHHHHHHHCCC-CCEEE
Q ss_pred EEecCCC------CceeEEEecCCCCCC
Q FD01845416_041 101 YSWTDSS------GVKQTTKWDSEGNVT 122 (122)
Q Consensus 101 Y~~~~~~------~~~~~~~Y~~~g~~~ 122 (122)
..|.+.+ +..-...|...|+++
T Consensus 103 V~~~~~~~~~~~~~~~~~~~y~g~~~~~ 130 (139)
T 8E5D_A 103 VVPPEGAIPVKRGATGETKVFTGNSNSP 130 (139)
T ss_pred EECCCCCcceEecccCceeEEecCCCCC
No 16
>5TKM_A DNA dC->dU-editing enzyme APOBEC-3B; HYDROLASE, DEAMINASE, APOBEC; 1.9A {Homo sapiens} SCOP: c.97.1.6
Probab=93.73 E-value=0.24 Score=38.77 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred ccchHHHHHHHHHhh-cccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDTS-TYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~~-~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
..|+|..+|+++... .......+.+|-++- .||+.|-+.+.+|.+++.
T Consensus 71 ~~HAE~~~l~~~~~~~l~~~~~~~it~y~s~---------------sPC~~Ca~~l~~fl~~~~ 119 (198)
T 5TKM_A 71 QYHAEMCFLSWFCGNQLPADKCFQITWFVSW---------------TPCPDCVAKLAEFLSEHP 119 (198)
T ss_pred hhcHHHHHHHHHhcCCCCcccceeEEEEEeC---------------CCCHHHHHHHHHHHHHCC
No 17
>5Z98_B Apolipoprotein B mRNA editing enzyme catalytic polypeptide-like protein 3H; APOBEC3, APOBEC3H, cytidine deaminase, deaminase, anti-HIV, Vif, dsRNA, cancer, HIV-1, SIV, chimpanzee, dimerization, Pan troglodytes, ANTIVIRAL; 2.2A {Pan troglodytes}
Probab=93.71 E-value=0.32 Score=37.22 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred ccchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
..|+|..+|+.+.. ..+.....+.+|-|+- .||+.|-+.+.+|.+++.
T Consensus 54 ~~HAE~~~l~~~~~~~l~~~~~~~~tly~s~---------------sPC~~Ca~~i~~~~~~~~ 102 (185)
T 5Z98_B 54 KCHAEICFINEIKSMGLDETQCYQVTCYLTW---------------SPCSSCAWKLVDFIQAHD 102 (185)
T ss_dssp TCCHHHHHHHHHHHHCCCTTSCEEEEEEEEE---------------CCCHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHCCCCccCCcEEEEEEEc---------------CCCHHHHHHHHHHHHHCC
No 18
>PF18750.5 ; SNAD4 ; Secreted Novel AID/APOBEC-like Deaminase 4
Probab=93.34 E-value=0.44 Score=32.33 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
...|+|..+|..+........+.+.+|-+.- .||+.|...|..|..++.
T Consensus 31 ~~~hae~~~i~~~~~~~~~~~~~~~~l~~~~---------------~Pc~~c~~~i~~~~~~~~ 79 (130)
T A0A151P4M1_ALL 31 AAAHAEDAFFNTILPECESSLRYNVTWYVSS---------------SPCVACAERIAEILKKNK 79 (130)
T ss_pred ccccHHHHHHHHHHHHhccccceEEEEEEec---------------CCcHHHHHHHHHHHHHCC
No 19
>5W3V_A Apobec3H; cytidine deaminase, protein-RNA complex, ANTIVIRAL PROTEIN, ANTIVIRAL PROTEIN-RNA complex; HET: CSD; 2.243A {Macaca nemestrina}
Probab=93.20 E-value=0.31 Score=39.03 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred chHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|+++.. ........+.+|-|+- .||+.|-+.+.+|.+++.
T Consensus 56 HAE~~~L~~~~~~~l~~~~~~~iT~Yis~---------------SPC~~Ca~~i~~fl~~~~ 102 (215)
T 5W3V_A 56 HAEIRFINEIKSMGLDETQCYQVTCYLTW---------------SPCPSCAGELVDFIKAHR 102 (215)
T ss_dssp CHHHHHHHHHHHTTCCTTSCEEEEEEEEE---------------CCCHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHCCCCHHHccCeEEEEcC---------------CCCHHHHHHHHHHHHHCC
No 20
>PF14428.10 ; DddA-like ; Double-stranded DNA deaminase toxin A
Probab=93.14 E-value=0.64 Score=34.84 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CcccccchHHHHHHHHHh--hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecCCC
Q FD01845416_041 30 GYGATGHSEAKLLEHLDT--STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTDSS 107 (122)
Q Consensus 30 ~~g~~~hsEqklL~~le~--~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~~~ 107 (122)
......|.|.|+--+|.+ +. +...+|-|+. .-.||+.|...|..|.- -+.+++..|.-
T Consensus 69 ~~~~a~HVE~k~A~~Mr~~~~g----~~~~~lvIN~-------------~~~pC~~C~~~l~~~Lp-~G~~LtV~~~~-- 128 (137)
T Q63IL6_BURPS/1 69 IRGIASHVEPKAGLILNEDGSG----WKIGSLYINY-------------PNGPCLDCRTLMPFILN-DGSILYVTFPT-- 128 (137)
T ss_pred ccchhhhHHHHHHHHHHhcCCC----CeEEEEEecC-------------CCCcCcchHhHHHHHcC-CCCEEEEEcCC--
Q ss_pred CceeEEEecCCC
Q FD01845416_041 108 GVKQTTKWDSEG 119 (122)
Q Consensus 108 ~~~~~~~Y~~~g 119 (122)
.++.|..++
T Consensus 129 ---~~~~~~g~~ 137 (137)
T Q63IL6_BURPS/1 129 ---LGLDGYSYG 137 (137)
T ss_pred ---ceEEEeeCC
No 21
>PF18778.5 ; NAD1 ; Novel AID APOBEC clade 1
Probab=92.35 E-value=0.49 Score=35.64 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred chHHHHHHHH--Hhhc--ccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHL--DTST--YSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~l--e~~~--~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|+.+ .... ....+.+.+|-++- .||+.|...+.+|+.++.
T Consensus 53 HAE~~~l~~~~~~~~~~~~~~~~~~~tly~s~---------------sPC~~C~~~i~~~l~~~~ 102 (179)
T E9QMH1_MOUSE/1 53 HAEICFLYWFHDKVLKVLSPREEFKITWYMSW---------------SPCFECAEQIVRFLATHH 102 (179)
T ss_pred CHHHHHHHHhhhcchhcCCCCCeEEEEEEEEC---------------CCcHHHHHHHHHHHHHCC
No 22
>8EDJ_A DNA dC->dU-editing enzyme APOBEC-3G; Deaminase, APOBEC, HYDROLASE, HYDROLASE-RNA complex; 1.83A {Macaca mulatta}
Probab=92.33 E-value=0.46 Score=40.79 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHc
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNK 95 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~n 95 (122)
.....|+|..+|.++..........+.+|-|+- .||+.|...+.+|..++
T Consensus 255 ~~~~~HAE~~~l~~~~~~~l~~~~~~~t~y~t~---------------SPC~~Ca~~i~~f~~~~ 304 (386)
T 8EDJ_A 255 FPKGRHAALCFLDLIPFWKLDGQQYRVTCFTSW---------------SPCFSCAQEMAKFISNN 304 (386)
T ss_pred CCCcccHHHHHHHHhhhhccCCCeEEEEEEEeC---------------CCcHHHHHHHHHHHHhC
No 23
>6BWY_E Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion; Deaminase, DNA binding, complex, HYDROLASE; HET: PO4; 2.9A {Schizosaccharomyces pombe (strain 972 / ATCC 24843)}
Probab=92.29 E-value=0.52 Score=39.72 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CcccccchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 30 GYGATGHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 30 ~~g~~~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
.+....|+|..+|+++.. ........+.++-++- .||+.|-..+.+|.+++.
T Consensus 228 ~~~~~~HAE~~~l~~~~~~~l~~~~~~~~t~y~s~---------------sPC~~Ca~~l~~fl~~~~ 280 (361)
T 6BWY_E 228 GFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSW---------------SPCFSCAQEMAKFISKNK 280 (361)
T ss_dssp ---CCCCHHHHHHHHGGGGCCCSSSCEEEEEEEEE---------------CCCHHHHHHHHHHHHHCS
T ss_pred CCcCCCCHHHHHHHhchhcCCCCCCCeEEEEEEeC---------------CCcHHHHHHHHHHHHHCC
No 24
>8EDJ_A DNA dC->dU-editing enzyme APOBEC-3G; Deaminase, APOBEC, HYDROLASE, HYDROLASE-RNA complex; 1.83A {Macaca mulatta}
Probab=92.18 E-value=0.56 Score=40.29 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred chHHHHHHHHHhh--cccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHLDTS--TYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~le~~--~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|.++... .......+-+|-|+- .||+.|-..+.+|.++|.
T Consensus 72 HAE~~~l~~~~~~~~~~~~~~~~vt~y~s~---------------SPC~~Ca~~i~~fl~~~~ 119 (386)
T 8EDJ_A 72 HPEMRFLRWFHKWRQLHHDQEYKVTWYVSW---------------SPCTRCANSVATFLAKDP 119 (386)
T ss_pred CHHHHHHHHHhHhcCCCccCceeEEEEEec---------------CCcHHHHHHHHHHHHHCC
No 25
>7DC9_D Guanosine deaminase; deamination, GSDA, purine metabolism, HYDROLASE; HET: GMP; 1.7A {Arabidopsis thaliana}
Probab=92.03 E-value=0.72 Score=32.61 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..|+|...+..+........+.+..|-++. .||+.|-..+..+
T Consensus 54 ~~haE~~ai~~~~~~~~~~~~~~~~l~~t~---------------~PC~~C~~~i~~~ 96 (161)
T 7DC9_D 54 TAHAQVTAIREACKKLNKIELSECEIYASC---------------EPCPMCFGAIHLS 96 (161)
T ss_dssp TCCHHHHHHHHHHHHHTCSCCTTEEEEEEE---------------CCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCcCCcEEEEec---------------CCCHHHHHHHHHc
No 26
>PF14437.10 ; MafB19-deam ; MafB19-like deaminase
Probab=91.95 E-value=0.75 Score=31.21 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
.....|+|+..++.+-.......+.+..|.+.. .||+.|...+..+
T Consensus 47 ~~~~~hae~~ai~~~~~~~~~~~~~~~~~y~~~---------------~pc~~c~~~~~~~ 92 (148)
T W0E4M5_9FIRM/1 47 QDPTAHAEVLAVQRATEKLGTWRLSDATLYVTL---------------EPCPMCAGALVQS 92 (148)
T ss_pred CCccccHHHHHHHHHHHHHCCCCCCCeEEEEec---------------CCCHHHHHHHHHC
No 27
>PF08210.15 ; APOBEC_N ; APOBEC-like N-terminal domain
Probab=91.79 E-value=1.1 Score=32.74 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ccchHHHHHHHHHhhcccc---cccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSG---KLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~---~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
..|+|..+|..+.... .. ...-..+.|-. ...||+.|...+.+|..++.
T Consensus 45 ~~HAE~~~l~~~~~~~-~~~~~~~~~~~~~ly~-------------t~sPC~~C~~~l~~~~~~~~ 96 (171)
T G3I2J2_CRIGR/4 45 NLHAEVCFLYWFHTQV-LGVLPPDEKYKITWYV-------------SWSPCNECAEKVASFLDTHR 96 (171)
T ss_pred CCcHHHHHHHHHHhcc-ccCCCCCCceEEEEEE-------------EcCCcHHHHHHHHHHHHHCC
No 28
>6X91_G Maltodextrin-binding protein, C->U-editing enzyme APOBEC-1 chimera; APOBEC, RNA editing, deamination, metalloenzyme, HYDROLASE; HET: CAC, GLC; 3.51A {Escherichia coli}
Probab=91.60 E-value=0.99 Score=38.71 Aligned_cols=50 Identities=12% Similarity=0.289 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
..|+|..+|+++..........--.+.|-. ...||+.|-..|.+|.++|.
T Consensus 416 ~~HAE~~~l~~~~~~~~~~~~~~~~~t~y~-------------~~sPC~~C~~~i~~~~~~~~ 465 (593)
T 6X91_G 416 TNHVAVNFIKKFTSERDFHPSTSCSITWFL-------------SWSPCWECSQAIREFLSRHP 465 (593)
T ss_pred CCcHHHHHHHHHHhhccCCCCCccEEEEEE-------------cCCChHHHHHHHHHHHHHCC
No 29
>7FH9_A CMP/dCMP-type deaminase domain-containing protein; deaminase, bi-function, dTTP, dTMP, BIOSYNTHETIC PROTEIN; HET: TTP, TMP; 1.9A {Paramecium bursaria Chlorella virus 1}
Probab=91.43 E-value=0.78 Score=31.50 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...|+|+.++..+... ...+.|.+|-+.. .||+.|...|..+
T Consensus 64 ~~~haE~~ai~~~~~~--~~~~~~~~l~~t~---------------~Pc~~C~~~i~~~ 105 (142)
T 7FH9_A 64 YVVHAQANAIATAARN--GVRLDGCSIITTL---------------FPCKECSKLIIQS 105 (142)
T ss_dssp TCBCHHHHHHHHHHHH--TCCCTTCEEEESS---------------CCCHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHc--CCCCCCcEEEecC---------------CCCHHHHHHHHHc
No 30
>2A8N_B cytidine and deoxycytidylate deaminase; RNA Editing, RNA BINDING PROTEIN; 1.6A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=91.12 E-value=0.89 Score=30.95 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|...+..+-......++.+.+|-+.+ .||+.|-..+..|
T Consensus 53 hae~~ai~~~~~~~~~~~~~~~~~~~~~---------------~pc~~c~~~~~~~ 93 (144)
T 2A8N_B 53 HAEIAVIRMACEALGQERLPGADLYVTL---------------EPCTMCAAAISFA 93 (144)
T ss_dssp CHHHHHHHHHHHHHTCSCCTTCEEEEEE---------------CCBHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEec---------------CCCHHHHHHHHHc
No 31
>PF00383.27 ; dCMP_cyt_deam_1 ; Cytidine and deoxycytidylate deaminase zinc-binding region
Probab=90.94 E-value=1.3 Score=27.23 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...|+|+..+..+........+.|..+-+.+ .||+.|...|..+
T Consensus 51 ~~~hae~~~i~~~~~~~~~~~~~~~~~~~~~---------------~pc~~c~~~~~~~ 94 (103)
T TADA_HAEIN/8-1 51 PTAHAEIIALRNGAKNIQNYRLLNSTLYVTL---------------EPCTMCAGAILHS 94 (103)
T ss_pred CcccHHHHHHHHHHHHhCCcccCCcEEEEec---------------CCCHHHHHHHHHc
No 32
>8CX0_A DNA dC->dU-editing enzyme APOBEC-3G; Viral protein, RNA binding protein, Complex, Ubiquitin E3 ligase, VIRAL PROTEIN-IMMUNE SYSTEM-RNA complex; 2.7A {Spodoptera frugiperda}
Probab=90.89 E-value=1 Score=40.08 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|.++........-.--.+.+-. .-.||+.|-+.+.+|.++|.
T Consensus 65 HAE~~~l~~~~~~~~~~~~~~~~it~y~-------------S~SPC~~Ca~~i~~fl~~~~ 112 (421)
T 8CX0_A 65 HPEMRFFHWFSKWRKLHRDQEYEVTWYI-------------SWSPCTKCTRDMATFLAEDP 112 (421)
T ss_pred CHHHHHHHHHhHhhcCCccCceEEEEEE-------------eCCCcHHHHHHHHHHHHHCC
No 33
>5CQI_A DNA dC-dU-editing enzyme APOBEC-3B; APOBEC, deaminase, HYDROLASE; HET: GOL; 1.68A {Homo sapiens} SCOP: l.1.1.1, c.97.1.6
Probab=90.82 E-value=0.83 Score=35.35 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred ccchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCch--hHHHHHHHHHHcC
Q FD01845416_041 34 TGHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPT--CQDGIADFAKNKK 96 (122)
Q Consensus 34 ~~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~--C~~~M~~FA~~nk 96 (122)
..|+|+.+|+++.. ..+.....+.++-|+- .||+. |...+.+|..++.
T Consensus 58 ~~HAE~~~l~~~~~~~l~~~~~~~it~y~s~---------------sPC~~~~Ca~~i~~f~~~~~ 108 (186)
T 5CQI_A 58 GRHAELRFLDLVPSLQLDPAQIYRVTWFISW---------------SPCFSWGCAGEVRAFLQENT 108 (186)
T ss_dssp TBCHHHHHHHHGGGGCCCTTSCEEEEEEEEE---------------CCCSTTSHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHhhcccCCCHhhceEEEEEEeC---------------CCCCCccHHHHHHHHHHHCC
No 34
>8CX0_A DNA dC->dU-editing enzyme APOBEC-3G; Viral protein, RNA binding protein, Complex, Ubiquitin E3 ligase, VIRAL PROTEIN-IMMUNE SYSTEM-RNA complex; 2.7A {Spodoptera frugiperda}
Probab=90.62 E-value=1.1 Score=39.84 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
|+|..+|++|....-... ..-.+.+-. .-.||+.|-..|.+|..++.
T Consensus 257 HAE~~fl~~~~~~~l~~~-~~~~it~y~-------------s~SPC~~Ca~~l~~fl~~~~ 303 (421)
T 8CX0_A 257 HAELCFLDVIPFWKLDLD-QDYRVTCFT-------------SWSPCFSCAQEMAKFISKNK 303 (421)
T ss_pred cHHHHHHHHhhhcCCCcc-CCeEEEEEE-------------ecCCCHHHHHHHHHHHHhCC
No 35
>4P9C_E Deoxycytidylate deaminase; dCMP deaminase, cytidine deaminase, deoxycytidylate deaminase, S-TIM5, HYDROLASE; HET: DCM, DU, ZN; 2.6A {Cyanophage S-TIM5}
Probab=90.56 E-value=1.1 Score=30.24 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred ccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 32 GATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
....|+|..+++.+..... ++.|.+|-++. .||+.|...+..|
T Consensus 66 ~~~~hae~~ai~~~~~~~~--~~~~~~~y~~~---------------~Pc~~c~~~~~~~ 108 (138)
T 4P9C_E 66 PFVLHAEQNALVKMAKSSE--SIDGSELFCTH---------------SPCPDCSKMIAQA 108 (138)
T ss_dssp TTCBCHHHHHHHHHHHSSS--CCTTCEEEEEE---------------CCCHHHHHHHHHT
T ss_pred ceEecHHHHHHHHHHhcCC--CCCCcEEEEeC---------------CCCHHHHHHHHHc
No 36
>1WKQ_B Guanine deaminase; Guanine deaminase, domain swap, the cytidine deaminase superfamily, substrate specificity, structural plasticity, HYDROLASE; HET: IMD; 1.17A {Bacillus subtilis} SCOP: c.97.1.2
Probab=90.06 E-value=1.6 Score=31.34 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..|+|...++.+........+.+.+|-++. .||+.|...+..+
T Consensus 59 ~~HaE~~ai~~~~~~~~~~~~~~~~l~~t~---------------ePC~~C~~~i~~~ 101 (164)
T 1WKQ_B 59 TAHAEVTAIRKACKVLGAYQLDDCILYTSC---------------EPCPMCLGAIYWA 101 (164)
T ss_dssp TCCHHHHHHHHHHHHHTSSSCTTCEEEEEE---------------CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCEEEEec---------------CCCHHHHHHHHHh
No 37
>5JFY_C Deoxycytidine deaminase; Cytidine deaminase, HYDROLASE; HET: HEZ, ACT, GOL; 2.101A {Brassica oleracea var. capitata}
Probab=89.49 E-value=1.6 Score=29.49 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|+..+..+-......++.+..|-+.+ .||+.|...+..+
T Consensus 66 hae~~ai~~~~~~~~~~~~~~~~~~~~~---------------~pc~~c~~~i~~~ 106 (139)
T 5JFY_C 66 HAEVTAIREACKKLNQIELSECEIYASC---------------EPCPMCFGAIHLS 106 (139)
T ss_dssp CHHHHHHHHHHHHHTCSCCTTCEEEESS---------------CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCCEEEEeC---------------CCCHHHHHHHHHc
No 38
>1WWR_D tRNA adenosine deaminase TadA; homodimer, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HYDROLASE; 1.8A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=89.46 E-value=1.6 Score=31.57 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...|+|...+..+........+.+.+|.+.. .||+.|...+..+
T Consensus 69 ~~~Hae~~ai~~~~~~~~~~~~~~~~l~~t~---------------~Pc~~c~~~i~~~ 112 (171)
T 1WWR_D 69 PTAHAEMLAIKEACRRLNTKYLEGCELYVTL---------------EPCIMCSYALVLS 112 (171)
T ss_dssp TTCCHHHHHHHHHHHHTTCSCCTTEEEEESS---------------CCBHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCCCCCCeEEEEEc---------------CCCHHHHHHHHHc
No 39
>2B3J_B tRNA adenosine deaminase; mixed alpha-beta, protein-rna complex, RNA stem-loop, HYDROLASE-RNA COMPLEX; HET: P5P, GOL; 2.0A {Staphylococcus aureus subsp. aureus Mu50} SCOP: c.97.1.2
Probab=89.36 E-value=1.7 Score=29.90 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|...+..+.......++.+.+|-+.. .||+.|...+..+
T Consensus 56 hae~~ai~~~~~~~~~~~~~~~~l~~~~---------------~pc~~C~~~~~~~ 96 (159)
T 2B3J_B 56 HAEHIAIERAAKVLGSWRLEGCTLYVTL---------------EPCVMCAGTIVMS 96 (159)
T ss_dssp CHHHHHHHHHHHHHTSSCCTTEEEEEEE---------------CCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCCCCCcEEEEEe---------------CCCHHHHHHHHHc
No 40
>2NX8_A TRNA-specific adenosine deaminase; tRNA, adenosine, deaminase, tad, HYDROLASE; 2.0A {Streptococcus pyogenes serotype M6} SCOP: c.97.1.0
Probab=89.35 E-value=1.6 Score=31.55 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CCCCccccc----chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 27 PFNGYGATG----HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 27 ~~n~~g~~~----hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
.+|...... |+|...++.+.......++.+.+|-++. .||+.|-..+..+
T Consensus 52 g~n~~~~~~~~~~haE~~ai~~~~~~~~~~~~~~~~l~~t~---------------ePC~~C~~~i~~~ 105 (179)
T 2NX8_A 52 GHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTI---------------EPCVMCSGAIGLA 105 (179)
T ss_dssp EECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEE---------------CCBHHHHHHHHHT
T ss_pred EEcCCCccCCccccHHHHHHHHHHHHhCCcccCCcEEEEeC---------------CCCHHHHHHHHHC
No 41
>5XKR_D CMP/dCMP deaminase, zinc-binding protein; hydrolase, cda fold, deaminase, benzoguanamine; HET: GOL, ACT, BZE; 1.38A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
Probab=89.11 E-value=1.5 Score=30.31 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..|+|...+..+........+.+..|-++. .||+.|...+..+
T Consensus 54 ~~hae~~a~~~~~~~~~~~~~~~~~l~~~~---------------~Pc~~c~~~~~~~ 96 (159)
T 5XKR_D 54 TAHPEFAIARWAARHLTPDRRARATVYTSG---------------EHCPMCAAAHAWV 96 (159)
T ss_dssp TCCHHHHHHHHHHHHSCHHHHHHCEEEEEE---------------CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhChhhhcCCEEEEeC---------------CCCHHHHHHHHHc
No 42
>2G84_B Cytidine and deoxycytidylate deaminase zinc-binding region; Cytidine and deoxycytidylate deaminase, zinc-binding region, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural; HET: EDO; 1.4A {Nitrosomonas europaea} SCOP: l.1.1.1, c.97.1.2
Probab=88.94 E-value=1.9 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred ccchHHHHHHHHHhhcccccccC-----CeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSG-----STLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~G-----stLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
+.|+|..+++.+.......+|.+ .+|-++. .||+.|-..+..+
T Consensus 77 ~~HAE~~ai~~~~~~~~~~~l~~~~~~~~~ly~t~---------------ePC~~C~~~i~~~ 124 (197)
T 2G84_B 77 AAHAEILALSLAQAKLDTHDLSADGLPACELVTSA---------------EPCVMCFGAVIWS 124 (197)
T ss_dssp TCCHHHHHHHHHHHHHTCSCTTSTTSCCEEEEEEE---------------CCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEeC---------------CCCHHHHHHHHHh
No 43
>PF14354.10 ; Lar_restr_allev ; Restriction alleviation protein Lar
Probab=88.81 E-value=0.31 Score=27.00 Aligned_cols=10 Identities=30% Similarity=1.055 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred cCCCCCchhH
Q FD01845416_041 76 SEIPACPTCQ 85 (122)
Q Consensus 76 ~glpPC~~C~ 85 (122)
+.+.|||+|+
T Consensus 1 ~~l~pCp~Cg 10 (58)
T E3GL28_9FIRM/2 1 TKLKRCPFCG 10 (58)
T ss_pred CCCCCCCCCC
No 44
>2W4L_D DEOXYCYTIDYLATE DEAMINASE; PYRIMIDINE METABOLISM, NUCLEOTIDE BIOSYNTHESIS, ZINC, HEXAMER, HYDROLASE, METAL-BINDING, PHOSPHOPROTEIN, ALLOSTERIC ENZYME; 2.1A {HOMO SAPIENS} SCOP: c.97.1.0
Probab=88.81 E-value=1.5 Score=32.30 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
+.|+|+.+|.. .....++|.+|-++. .||+.|...|.++
T Consensus 79 ~~HAE~~ai~~----~~~~~~~g~~ly~t~---------------~PC~~C~~~i~~~ 117 (178)
T 2W4L_D 79 VCHAELNAIMN----KNLTDVKGCSMYVAL---------------FPCNECAKLIIQA 117 (178)
T ss_dssp CBCHHHHHHHH----C----CTTCEEEEEE---------------CCCHHHHHHHHHH
T ss_pred cchHHHHHHHh----cCCCCCCCcEEEEeC---------------CCCHHHHHHHHHc
No 45
>1Z3A_A tRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research; 2.03A {Escherichia coli} SCOP: c.97.1.2
Probab=88.53 E-value=1.8 Score=30.37 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|+..+..+.......++.+.+|-+++ .||+.|...+..+
T Consensus 58 haE~~ai~~~~~~~~~~~~~~~~l~~t~---------------~Pc~~C~~~i~~~ 98 (168)
T 1Z3A_A 58 HAEIMALRQGGLVMQNYRLIDATLYVTL---------------EPCVMCAGAMIHS 98 (168)
T ss_dssp CHHHHHHHHHHHHHTSSCCTTCEEEEEE---------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEec---------------CCCHHHHHHHHHc
No 46
>PF18769.5 ; APOBEC1 ; APOBEC1
Probab=88.29 E-value=2.9 Score=27.28 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ccchHHHHHHHHHhh--cccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHc
Q FD01845416_041 34 TGHSEAKLLEHLDTS--TYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNK 95 (122)
Q Consensus 34 ~~hsEqklL~~le~~--~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~n 95 (122)
..|+|..+++.+... .....+.+-+|-+.- .||+.|...+..|+.++
T Consensus 16 ~~hae~~ai~~~~~~~~~~~~~~~~~~~y~s~---------------~pc~~c~~~i~~~~~~~ 64 (101)
T M3WB96_FELCA/4 16 ANHVELNFIEKFTSERHFCPSVSCSITWFLSW---------------SPCWECSKAIRGFLSQH 64 (101)
T ss_pred CCcHHHHHHHHHhhccccCCCCeeEEEEEEee---------------CCCHHHHHHHHHHHHHC
No 47
>7CPH_A tRNA-specific adenosine deaminase; Hydrolase, tRNA adenosine deaminase; HET: GOL; 2.3A {Bacillus subtilis subsp. subtilis str. 168} SCOP: c.97.1.0
Probab=87.90 E-value=2.8 Score=29.10 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 30 GYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 30 ~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
......|+|...+..+........+.+..|-+.. .||+.|...|..+
T Consensus 53 ~~~~~~hae~~ai~~~~~~~~~~~~~~~~~~~~~---------------~Pc~~c~~~~~~~ 99 (167)
T 7CPH_A 53 EQRSIAHAEMLVIDEACKALGTWRLEGATLYVTL---------------EPCPMCAGAVVLS 99 (167)
T ss_dssp SCCTTCCHHHHHHHHHHHHHTCSCCTTEEEEEEE---------------CCCHHHHHHHHHT
T ss_pred cCCccccHHHHHHHHHHHHHCCCCCCCcEEEEEc---------------CCCHHHHHHHHHc
No 48
>PF18772.5 ; APOBEC2 ; APOBEC2
Probab=87.82 E-value=2.7 Score=31.09 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
...|+|..+++.+....+.....+.+|-+.- .||+.|...+..|..+++
T Consensus 47 ~~~hae~~~i~~~~~~l~~~~~~~~~~y~t~---------------~Pc~~C~~~i~~~~~~~~ 95 (177)
T G1NCP5_MELGA/4 47 AASHAEIAFFNTILPKCESSLRYNITWYVSS---------------SPCVTCADRISETLRKNK 95 (177)
T ss_pred ccCcHHHHHHHHHHHHcCcccceEEEEEEeC---------------CChHHHHHHHHHHHHHCC
No 49
>2Z3H_D Blasticidin-S deaminase; HYDROLASE, CYTIDINE DEAMINASE FAMILY, ZINC, TETRAMER; HET: BLO; 1.5A {Aspergillus terreus} SCOP: c.97.1.1
Probab=87.65 E-value=4.1 Score=27.96 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccC---CCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSE---IPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~g---lpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
.....|+|+..|..+... ...++.+..|--.. + ..||..|...|.+|. .+..|-+...+
T Consensus 49 ~~~~~haE~~al~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~PC~~C~~~l~~~~--~~~~~~~~~~~ 110 (130)
T 2Z3H_D 49 FTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE-------------NRGILSPCGRCRQVLLDLH--PGIKAIVKDSD 110 (130)
T ss_dssp TTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT-------------TTEECCCCHHHHHHHHHHC--TTCEEEEECTT
T ss_pred CCCCCCHHHHHHHHHHHc-cCCCeEEEEEEecC-------------CCcccCChHHHHHHHHHHC--CCCEEEEECCC
No 50
>2KDX_A Hydrogenase/urease nickel incorporation protein hypA; metallochaperone, hydrogenase, Metal-binding, Nickel, METAL-BINDING PROTEIN, METAL BINDING PROTEIN; HET: ZN; NMR {Helicobacter pylori}
Probab=86.90 E-value=2.4 Score=29.52 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ccccchHHHHHHHHHhhcc-cc-cccCCeEEEeeccccc----cCCeeeccCCC--CCchhH
Q FD01845416_041 32 GATGHSEAKLLEHLDTSTY-SG-KLSGSTLEMHSLGQMM----NNGTKHLSEIP--ACPTCQ 85 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~~-~~-~L~GstLeI~S~~~f~----ng~~~~~~glp--PC~~C~ 85 (122)
|....-+...|+..-+... .. -|+|.+|+|...+... =|..+.+...+ .||.|+
T Consensus 36 G~~~~v~~~~l~~~~~~~~~~~~~~~~~~l~i~~~~~~~~C~~Cg~~~~~~~~~~~~CP~Cg 97 (119)
T 2KDX_A 36 GERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCH 97 (119)
T ss_dssp ETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECSCCSTTCCCSSSS
T ss_pred CChhcCCHHHHHHHHHHHhcCCCccCCCEEEEEEeCceeEecCCCCEecCCcccCccCCCCC
No 51
>1UWZ_A CYTIDINE DEAMINASE; CYTIDINE DEAMINASE, CDD, TETRAMER, ZINC BINDING, PYRIMIDINE METABOLISM, SALVAGE, HYDROLASE; HET: THU; 1.99A {BACILLUS SUBTILIS} SCOP: c.97.1.1
Probab=86.80 E-value=4.3 Score=27.83 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
.....|+|+..+..+-... ..++....+--.. -....||..|-..|.+|.. .+..|-+...+
T Consensus 48 ~~~~~hae~~ai~~~~~~~-~~~~~~~~~~~~~-----------~~~~~PC~~C~~~l~~~~~-~~~~v~~~~~~ 109 (136)
T 1UWZ_A 48 YSMCNCAEATALFKAVSEG-DTEFQMLAVAADT-----------PGPVSPCGACRQVISELCT-KDVIVVLTNLQ 109 (136)
T ss_dssp GGGCBCHHHHHHHHHHHHT-CCCEEEEEEEESC-----------SSSCCCCHHHHHHHHHHSC-TTCEEEEECSS
T ss_pred ccCCCcHHHHHHHHHHHCC-CCceEEEEEEeCC-----------CCCCCCCHHHHHHHHHHCC-CCeEEEEECCC
No 52
>PF18771.5 ; APOBEC3 ; APOBEC3
Probab=86.59 E-value=4.3 Score=28.00 Aligned_cols=49 Identities=12% Similarity=0.405 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred cccchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 33 ATGHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 33 ~~~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
.+.|+|..+++.+.. .....+..+.+|-+.- .||+.|-..+.++..+++
T Consensus 29 ~~~hae~~~i~~~~~~~~~~~~~~~~~~y~t~---------------~pc~~c~~~i~~~~~~~~ 78 (135)
T B7T155_BOVIN/4 29 KQRHAEIRFIDKINSLDLNPSQSYKIICYITW---------------SPCPNCANELVNFITRNN 78 (135)
T ss_pred CCCCHHHHHHHHHHhCCCCcCCceEEEEEEEc---------------CCChHHHHHHHHHHHHCC
No 53
>2HVW_A deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, HYDROLASE; HET: DCP, DDN, DIO; 1.67A {Streptococcus mutans}
Probab=86.36 E-value=2.8 Score=31.21 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...|+|+..+..+... ..++.+..|-+.. .||+.|...+..+
T Consensus 102 ~~~HaE~~ai~~~~~~--~~~~~~~~l~~t~---------------~PC~~C~~~i~~~ 143 (184)
T 2HVW_A 102 RTVHAEMNALIQCAKE--GISANNTEIYVTH---------------FPCINCTKALLQA 143 (184)
T ss_dssp SEECHHHHHHHHHHHH--TCCCTTEEEEEEE---------------CCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHc--CCCCCCcEEEEeC---------------CCCHHHHHHHHHc
No 54
>1P6O_B Cytosine deaminase; cytosine deaminase, hydrolase, dimer, inhibitor bound; HET: ACY, HPY; 1.14A {Saccharomyces cerevisiae} SCOP: l.1.1.1, c.97.1.2
Probab=85.92 E-value=3.5 Score=29.07 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred cccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 33 ATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 33 ~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...|+|...+..+.... ...+.+.+|-+.. .||+.|...|..+
T Consensus 62 ~~~hae~~ai~~~~~~~-~~~~~~~~l~~t~---------------~Pc~~C~~~i~~~ 104 (161)
T 1P6O_B 62 ATLHGEISTLENCGRLE-GKVYKDTTLYTTL---------------SPCDMCTGAIIMY 104 (161)
T ss_dssp SSCCHHHHHHHHHCSCC-GGGGTTEEEEEEE---------------CCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhHhhc-CCCCCCeEEEEcC---------------CCCHHHHHHHHHh
No 55
>PF14441.10 ; OTT_1508_deam ; OTT_1508-like deaminase
Probab=85.25 E-value=4 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|.+||..+..+..... ..|.. .-++|-.|...|..+
T Consensus 2 HaE~~ll~~~~~~~~~~~-----~~IG~-------------Sk~~C~~C~~~~~~~ 39 (64)
T V2XKW7_MONRO/5 2 HCEVAMAMYLMEEQVDAF-----SYIGC-------------SKRLCGACFTFFDIL 39 (64)
T ss_pred CHHHHHHHHHHHcCCCCC-----cEEEe-------------cCcchHHHHHHHHHH
No 56
>3B8F_D Putative Blasticidin S deaminase; cytidine deaminase, Bacillus anthracis, Structural genomics, PSI-2, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics; 1.9A {Bacillus anthracis}
Probab=85.16 E-value=5.6 Score=28.02 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCC--------CCchhHHHHHHH
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIP--------ACPTCQDGIADF 91 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glp--------PC~~C~~~M~~F 91 (122)
........|+|+..|..+-.. ...++. .+-|.+ ... ||..|.+.|.+|
T Consensus 44 ~~~~~~~~hAE~~al~~~~~~-~~~~~~--~~~~~~-------------~~~~~~~~~~~PCg~C~~~i~~~ 99 (142)
T 3B8F_D 44 VINASTELCMETGAILEAHKF-QKKVTH--SICLAR-------------ENEHSELKVLSPCGVCQERLFYW 99 (142)
T ss_dssp CSSGGGCCCTTHHHHHHHHHH-TCCEEE--EEEEEE-------------SSTTSCCEECCCCHHHHHHHGGG
T ss_pred cCCCCCCcchhHHHHHHHHhC-CCCeEE--EEEEEE-------------cCCCCCceeecCcHHHHHHHHHH
No 57
>5AUN_A Probable hydrogenase nickel incorporation protein HypA; protein complex, metallochaperone, METAL BINDING PROTEIN-HYDROLASE complex; HET: URE, GOL, ADP; 1.63A {Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
Probab=85.12 E-value=0.95 Score=33.68 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred ccccchHHHHHH-HHHhhcccccccCCeEEEeeccccc----cCCeeeccC----------------------CCCCchh
Q FD01845416_041 32 GATGHSEAKLLE-HLDTSTYSGKLSGSTLEMHSLGQMM----NNGTKHLSE----------------------IPACPTC 84 (122)
Q Consensus 32 g~~~hsEqklL~-~le~~~~~~~L~GstLeI~S~~~f~----ng~~~~~~g----------------------lpPC~~C 84 (122)
|.-.+-+...|+ .++......-|+|..|+|.-.+..+ =|..+.+.. ..+||.|
T Consensus 34 G~ls~v~~e~l~~~f~~~~~~t~~~~a~L~i~~~p~~~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~C 113 (139)
T 5AUN_A 34 GELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKC 113 (139)
T ss_dssp EGGGCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTCCEEEGGGTGGGCCHHHHHHHHHCGGGHHHHCCCTTT
T ss_pred CChhCCCHHHHHHHHHHHhCCCcCCCCEEEEEEeccEEEeCCCCCEEEehhhccccchhhhhchhcCcchhhccccCCCC
Q ss_pred HHHHHHHHHHcCCEEE
Q FD01845416_041 85 QDGIADFAKNKKMNIT 100 (122)
Q Consensus 85 ~~~M~~FA~~nkm~It 100 (122)
+........-.++.|.
T Consensus 114 gs~~~~i~~G~e~~i~ 129 (139)
T 5AUN_A 114 GSHDFEVVKGRGVYVA 129 (139)
T ss_dssp CCSCEEEEECCSEEEE
T ss_pred CCcCeEEEcCCcEEEE
No 58
>PF18775.5 ; APOBEC4 ; APOBEC4
Probab=85.01 E-value=2.1 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred ccCCCCCchhHHHHHHHH---HHcCCEEE
Q FD01845416_041 75 LSEIPACPTCQDGIADFA---KNKKMNIT 100 (122)
Q Consensus 75 ~~glpPC~~C~~~M~~FA---~~nkm~It 100 (122)
++.-.||+.|-..+.+|. +++..+|+
T Consensus 6 ~~s~SPC~~Ca~~l~~fl~~~~~~~~~v~ 34 (80)
T F6SPN1_CIOIN/8 6 MSSRSPSNAGAEQLQGFLEYCKKHSIKVN 34 (80)
T ss_pred ecCCCCcHHHHHHHHHHHHHHHHCCCceE
No 59
>PF14439.10 ; Bd3614-deam ; Bd3614-like deaminase
Probab=84.57 E-value=4.7 Score=25.53 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred ccccchHHHHHHHHHhhc-ccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 32 GATGHSEAKLLEHLDTST-YSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~-~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..+.|+|+..+..+.... ....+.+.+|.+.. .||+.|...+..+
T Consensus 33 ~~~~hae~~ai~~~~~~~~~~~~~~~~~l~~~~---------------~pc~~c~~~~~~~ 78 (110)
T A4S9Y1_OSTLU/1 33 NAVLHAEMNLLFPADDARARRLIEPDTTLLVTL---------------QCCRMCAARAVEL 78 (110)
T ss_pred CccchHHHHHHHHHHHHHhhccCCCCeEEEEec---------------CCCHHHHHHHHHc
No 60
>6KW6_B cytidine deaminase; HYDROLASE; 1.895A {Streptomyces noursei} SCOP: c.97.1.0
Probab=84.06 E-value=5 Score=26.75 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
........|+|+..+..+... ...++.+..|-... -....||+.|...+.++
T Consensus 53 ~~~~~~~~haE~~ai~~~~~~-~~~~~~~~~~~~~~-----------~~~~~pc~~c~~~i~~~ 104 (135)
T 6KW6_B 53 NASYGLGLCAECGLVSALFAS-GGGRLTAFTCVDGK-----------GELLVPCGRCRQLLHEH 104 (135)
T ss_dssp CSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECTT-----------SCBCCCCHHHHHHHHHH
T ss_pred cCCcCCCCCHHHHHHHHHHHC-CCCcEEEEEEEcCC-----------CCcccCCHHHHHHHHHh
No 61
>6U08_G Double-stranded DNA-specific cytidine deaminase; type VI secretion system, toxin, immunity, deaminase; HET: MSE; 2.491A {Burkholderia cenocepacia}
Probab=83.92 E-value=3.9 Score=31.07 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred ccCCCCcCCCCCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcC
Q FD01845416_041 17 WNHDWGSRKAPFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKK 96 (122)
Q Consensus 17 ~~~t~Ga~~~~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nk 96 (122)
+....+.....|.......|.|.+.-..+.... +.+.+|.|.. ..+||+.|...|..+..+..
T Consensus 77 ~~~~~~~~~~~fp~~~~~~hvE~k~a~~~r~~g----~~~~~l~in~-------------~~~~C~~C~~~l~~~lp~~~ 139 (178)
T 6U08_G 77 SKVFSSGGPTPYPNYANAGHVEGQSALFMRDNG----ISEGLVFHNN-------------PEGTCGFCVNMTETLLPENA 139 (178)
T ss_dssp EEEEESSCCCSCTTSTTTTSHHHHHHHHHHHHT----CCEEEEEECC-------------TTCBCHHHHHHHHHHSCTTC
T ss_pred eeeccCCCCCCCCCCccCccccchhhhhhHhcC----CceeEEEecC-------------CCCCCCchhHhHHHHCCCCC
Q ss_pred CEEEE
Q FD01845416_041 97 MNITY 101 (122)
Q Consensus 97 m~ItY 101 (122)
-.+.|
T Consensus 140 ~l~v~ 144 (178)
T 6U08_G 140 KMTVV 144 (178)
T ss_dssp EEEEE
T ss_pred EEEEE
No 62
>6VPC_F t-RNA adenine deaminase A v8e (TadA-8e); Base editor, ABE, Cas9, CRISPR, DNA BINDING PROTEIN-DNA-RNA complex; HET: 8AZ;{Streptococcus pyogenes}
Probab=82.20 E-value=4.9 Score=31.67 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..|+|..+|+.+........+.+.+|-++. .||+.|-..+..|
T Consensus 83 ~~HAE~~Ai~~a~~~~~~~~~~~~~ly~t~---------------ePC~~C~~ai~~~ 125 (227)
T 6VPC_F 83 TAHAEIMALRQGGLVMQNYRLIDATLYVTF---------------EPCVMCAGAMIHS 125 (227)
T ss_dssp TCCHHHHHHHHHHHHHTCSCCTTCEEEESS---------------CCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCCCCCcEEEEeC---------------CCCHHHHHHHHHc
No 63
>3R2N_D Cytidine deaminase; Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, tuberculosis, cytidine deaminase, CDA, pyrimidine salvage; HET: EDO; 2.3A {Mycobacterium leprae} SCOP: c.97.1.0, l.1.1.1
Probab=81.60 E-value=8.3 Score=26.74 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
.....|+|+..|.++... ...++. .+-+.+ ..-..+.||..|.+.|.+|
T Consensus 55 ~~~~~haE~~al~~~~~~-~~~~~~--~~~~~~---------~~~~~~~PC~~C~~~l~~~ 103 (138)
T 3R2N_D 55 YGLALCAECSMISALYAT-GGGRLV--AVYCVD---------GNGDSLMPCGRCRQLLYEH 103 (138)
T ss_dssp GGGCBCHHHHHHHHHHHT-TCCCEE--EEEEEC---------TTSCBCCCCHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHc-CCCcEE--EEEEEc---------CCCCccCCCHHHHHHHHHh
No 64
>2FR5_D Cytidine deaminase; CYTIDINE DEAMINASE, TETRAHYDROURIDINE, PROTEIN-INHIBITOR COMPLEX, ALTERNATE CONFORMATION OF ARG68, Hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1
Probab=80.68 E-value=12 Score=26.09 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccC---CCCCchhHHHHHHHHHHcCCEEEEEec
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSE---IPACPTCQDGIADFAKNKKMNITYSWT 104 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~g---lpPC~~C~~~M~~FA~~nkm~ItY~~~ 104 (122)
........|+|+.+|..+.... ..++....+-... . ..||..|...|.++.. +..|-|...
T Consensus 57 ~~~~~~~~haE~~al~~~~~~~-~~~~~~~~~~~~~-------------~~~~~~Pc~~C~~~l~~~~~--~~~v~~~~~ 120 (146)
T 2FR5_D 57 NACYPLGVCAERTAIQKAISEG-YKDFRAIAISSDL-------------QEEFISPCGACRQVMREFGT--DWAVYMTKP 120 (146)
T ss_dssp CSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESC-------------SSSCCCCCHHHHHHHHHTCS--SSEEEEECT
T ss_pred CCCCCCCCcHHHHHHHHHHHCC-CCceEEEEEEeCC-------------CCCCCCCchHHHHHHHHhCC--CcEEEEECC
Q ss_pred C
Q FD01845416_041 105 D 105 (122)
Q Consensus 105 ~ 105 (122)
+
T Consensus 121 ~ 121 (146)
T 2FR5_D 121 D 121 (146)
T ss_dssp T
T ss_pred C
No 65
>7BV5_A tRNA-specific adenosine deaminase subunit TAD2; deaminase, inosine, auto-inhibition, RNA binding protein, RNA modification, HYDROLASE; 2.8A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=80.67 E-value=6 Score=31.22 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ccchHHHHHHHHHhhcccc----cccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSG----KLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~----~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
+.|+|...++.+....... .+++.+|-++. .||+.|-..+.++
T Consensus 55 ~~HAE~~ai~~~~~~~~~~~~~~~~~~~~lyvt~---------------ePC~~C~~~i~~~ 101 (253)
T 7BV5_A 55 VAHAEFMGIDQIKAMLGSRGVVDVFKDITLYVTV---------------EPCIMCASALKQL 101 (253)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEE---------------CCBHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHCCCCceecccCcEEEEec---------------CCCHHHHHHHHHc
No 66
>4WIG_A Cytidine deaminase; cytidine deaminase, MtCDA E47D, HYDROLASE; 1.758A {Mycobacterium tuberculosis} SCOP: c.97.1.0
Probab=80.25 E-value=7.3 Score=26.31 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
.....|+|+..|..+-.. ...++.+..+.... -..+.||..|...+.+|
T Consensus 51 ~~~~~~aE~~ai~~~~~~-~~~~~~~~~~~~~~-----------~~~~~Pc~~c~~~i~~~ 99 (133)
T 4WIG_A 51 YGLTLCAECAVVCALHST-GGGRLLALACVDGH-----------GSVLMPCGRCRQVLLEH 99 (133)
T ss_dssp GGGCBCHHHHHHHHHHHT-TCCCEEEEEEEETT-----------CCBCCCCHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHHc-CCCCEEEEEEEcCC-----------CCccCCCHHHHHHHHHh
No 67
>1VQ2_A DEOXYCYTIDYLATE DEAMINASE; HYDROLASE; HET: DDN; 2.2A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=79.97 E-value=8.3 Score=29.83 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCcccCCCCcCCCCCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 14 GGLWNHDWGSRKAPFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 14 ~~~~~~t~Ga~~~~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
+..+....+.............|+|..+|..+.. ...++.|.+|-+.. .||+.|...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~hae~~a~~~~~~--~~~~~~~~~~y~t~---------------~PC~~C~~~i~~~ 142 (193)
T 1VQ2_A 82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAE--NGSSIEGATMYVTL---------------SPCPDCAKAIAQS 142 (193)
T ss_dssp -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHH--HTCCCTTCEEEEEE---------------CCCHHHHHHHHHH
T ss_pred chhhHhccccccccccccccccHHHHHHHHHHHH--cCCCCCCcEEEEeC---------------ccCHHHHHHHHHc
No 68
>PF14440.10 ; XOO_2897-deam ; Xanthomonas XOO_2897-like deaminase
Probab=79.71 E-value=4.9 Score=26.02 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred chHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCC---chhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC---PTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC---~~C~~~M~~F 91 (122)
|+|..++..+.... -+..++-+ .+.|| +.|...|.++
T Consensus 26 hae~~~i~~~~~~~------~~~~~ly~-------------~~~PC~~~~~C~~~i~~~ 65 (97)
T A9EVR3_SORC5/1 26 HAERVLMGLSEVDP------AKVVAVYT-------------ERSPCTGRINCHDLLDSS 65 (97)
T ss_pred cHHHHHHHhcCCCH------HhceEEEE-------------CCcCCCCCCCHHHHHHHh
No 69
>7ZOB_D Metagenomic cytidine deaminase Cdd; HYDROLASE; HET: SO4, MPD; 1.2A {uncultured bacterium}
Probab=79.48 E-value=15 Score=26.07 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCcccccchHHHHHHHHHhhcccc--cccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSG--KLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~--~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
........|+|+..+..+-... .. ++.+-.+--... ....||..|.+.|.+|.. .++.|-+...+
T Consensus 45 ~~~~~~~~~aE~~Ai~~a~~~g-~~~~~~~~~~~~~~~~-----------~~~~PCg~C~~~l~~~~~-~~~~v~~~~~~ 111 (140)
T 7ZOB_D 45 NASYGATNCGERSAIFAAYSNG-YRADDIEALAIVTDGD-----------RVGAPCGICRQVLSELLN-DNTPIYLSNGK 111 (140)
T ss_dssp CSSGGGCBCHHHHHHHHHHHTT-CCGGGEEEEEEECCCS-----------SCCCCCHHHHHHHHHHSC-TTCCEEEECSS
T ss_pred cCccCCCChHHHHHHHHHHHCC-CCcccccEEEEEecCC-----------CCCCCcHHHHHHHHHHcC-CCCcEEEeCCC
No 70
>3MPZ_D Cytidine deaminase; SSGCID, MYCOBACTERIUM SMEGMATIS, CYTIDINE DEAMINASE, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, HYDROLASE; 1.7A {Mycobacterium smegmatis} SCOP: c.97.1.0, l.1.1.1
Probab=78.48 E-value=8.2 Score=27.55 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEE----eeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEM----HSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI----~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
........|+|+..|..+... ...++.+..|-- .. .||..|-..|.+|
T Consensus 67 ~~~~~~~~hAE~~al~~a~~~-~~~~~~~~~l~~~~~~~~---------------~PC~~C~~~i~~~ 118 (150)
T 3MPZ_D 67 NVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGPDGGVL---------------MPCGRCRQVLLEH 118 (150)
T ss_dssp CSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECTTCCBC---------------CCCHHHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHhC-CCCcEEEEEEECCCCCcc---------------CCCHHHHHHHHHh
No 71
>PF01155.23 ; HypA ; Hydrogenase/urease nickel incorporation, metallochaperone, hypA
Probab=78.43 E-value=2.8 Score=28.96 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ccccchHHHHHHHHHhhcc-cccccCCeEEEeeccccc----cCCeeeccCCC-CCchhHHHHHHHHHHcCCEEE
Q FD01845416_041 32 GATGHSEAKLLEHLDTSTY-SGKLSGSTLEMHSLGQMM----NNGTKHLSEIP-ACPTCQDGIADFAKNKKMNIT 100 (122)
Q Consensus 32 g~~~hsEqklL~~le~~~~-~~~L~GstLeI~S~~~f~----ng~~~~~~glp-PC~~C~~~M~~FA~~nkm~It 100 (122)
|...+-+...|+.+-+... ...|+|.+|.|...+... =|..+.+...+ -||.|+..=.++..-.++.|.
T Consensus 34 g~~~~i~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~C~~Cg~~~~~~~~~~~Cp~Cg~~~~~i~~g~~~~i~ 108 (112)
T R6KGB9_9CLOT/1 34 GELTGLMPNCISYYFNIAAKGTLAEDAEISIAYEKVMIKCHNCGFEGKFINKQYVCPSCGKSDYKIVKGREFYID 108 (112)
T ss_pred CchhCCCHHHHHHHHHHHhcCCcccCCEEEEEeccceeeCCCCCCEEecccCCeeCCCCCCCCcEEecCCcEEEE
No 72
>7JTU_A SsdA; Toxin, Immunity, Type VI, T6SS, deaminase; HET: MSE; 3.0A {Pseudomonas syringae}
Probab=78.20 E-value=18 Score=27.97 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred cccCCeEEEeeccccc--cCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecCCCCceeEEEecCCCCC
Q FD01845416_041 53 KLSGSTLEMHSLGQMM--NNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTDSSGVKQTTKWDSEGNV 121 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~--ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~~~~~~~~~~Y~~~g~~ 121 (122)
.+.|....=+.+.+++ .-.....-.-++|+.|...+..+++..++.+....++ .+-.|..+|.+
T Consensus 93 g~~G~~~AsHAEkql~~~~~~~~I~Vsr~~C~~C~~f~~~~~~~~g~~~~v~dp~-----g~~~f~~~g~~ 158 (165)
T 7JTU_A 93 DYKGQYFSSHAEKQMSIASPNHPLGVSKPMCTDCQGYFSQLAKYSKVEQTVADPK-----AIRIFKTDGSV 158 (165)
T ss_dssp SSTTTGGGGCHHHHHHHHSTTCCEEESSCCCHHHHHHHTTHHHHHCSCEEEECSS-----EEEEECTTSCE
T ss_pred CCCCceeeccccccccccCCCCCeecCcccCccHHHHHHHHHHhhCCceEEECCC-----CeEEeccCCCe
No 73
>7NZ9_A tRNA-specific adenosine deaminase 2; tRNA modification, wobble adenine, inosine, ADAT, intellectual disability, neurological disorders, HYDROLASE; 1.99A {Mus musculus} SCOP: c.97.1.0
Probab=78.04 E-value=7.1 Score=28.71 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred chHHHHHHHHHhhccccc------ccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGK------LSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~------L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|...++.+........ +.|.+|-++. .||+.|-..+..+
T Consensus 71 HaE~~ai~~~~~~~~~~~~~~~~~~~~~~ly~t~---------------ePC~~C~~~i~~~ 117 (191)
T 7NZ9_A 71 HAEMVAIDQVLDWCHQHGQSPSTVFEHTVLYVTV---------------EPCIMCAAALRLM 117 (191)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHTTEEEEEEE---------------CCBHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhcCCcEEEEeC---------------CcCHHHHHHHHHC
No 74
>6L2M_A Nucleoside deaminase family protein; tRNA-specific deaminase, protein engineering, RNA BINDING PROTEIN; 2.30254929158A {Mycoplasma capricolum subsp. capricolum}
Probab=76.47 E-value=12 Score=26.28 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred ccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
..|+|...+..+........+.+..|-+.. .||+.|-..+..+
T Consensus 52 ~~hae~~ai~~~~~~~~~~~~~~~~l~~~~---------------~pc~~c~~~~~~~ 94 (152)
T 6L2M_A 52 SQHAEINVINDLISKLNSFNLSKYKLITTL---------------EPCMMCYSAIKQV 94 (152)
T ss_dssp TCCHHHHHHHHHHHHHTCSCCTTCEEEEEE---------------CCCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCcCCCCCcEEEEec---------------CCCHHHHHHHHHc
No 75
>6L08_A Cytidine deaminase 1; pyrimidine metabolism, RNA editing, catalytic mechanism, METAL BINDING PROTEIN; 2.999A {Arabidopsis thaliana}
Probab=75.79 E-value=15 Score=30.59 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 30 GYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 30 ~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
..+..-|+|+-.|..+-..-.. ...++-+. .+||..|-+.|.+|....++.|.....+
T Consensus 72 ~~~~~~hAE~~Ai~~a~~~g~~---~~~~i~v~---------------~~PCg~Crq~l~e~~~~~~~~v~~~~~~ 129 (308)
T 6L08_A 72 PLHHSIHAEQFLVTNLTLNGER---HLNFFAVS---------------AAPCGHCRQFLQEIRDAPEIKILITDPN 129 (308)
T ss_dssp CGGGCBCHHHHHHHHHHHTTCC---CEEEEEES---------------SCCCHHHHHHGGGSTTGGGCEEEECCTT
T ss_pred CcCCcccHHHHHHHHHHHCCCC---ceeEEEEe---------------cCCcHHHHHHHHHhcCCCCcEEEEeCCC
No 76
>PF18785.5 ; Inv-AAD ; Invertebrate-AID/APOBEC-deaminase
Probab=72.59 E-value=18 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ccchHHHHHHHHHhhcccc-------cccCCeEEEeeccccccCCeeeccCCCCCch-------hHHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSG-------KLSGSTLEMHSLGQMMNNGTKHLSEIPACPT-------CQDGIADF 91 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~-------~L~GstLeI~S~~~f~ng~~~~~~glpPC~~-------C~~~M~~F 91 (122)
..|+|..+++.+....... .+.|.+|-++. .||+. |-..+...
T Consensus 24 ~~HaE~~ai~~~~~~~~~~~~~~~~~~~~~~~ly~t~---------------ePC~~~~~~~~~c~~~i~~~ 80 (129)
T A0A179G910_MET 24 NTHAEECCLLKLAEQHGTTEEGLANVIKTPHALYTTM---------------EPCFKRLSGKLPCVERVLRQ 80 (129)
T ss_pred CCHHHHHHHHHHHHHhCCChHHhhcccCCCcEEEEec---------------CCchhhcCCCCCHHHHHHHC
No 77
>PF07295.15 ; DUF1451 ; Zinc-ribbon containing domain
Probab=71.82 E-value=4 Score=30.62 Aligned_cols=16 Identities=44% Similarity=1.049 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCeeec---cCCCCCchhH
Q FD01845416_041 70 NGTKHL---SEIPACPTCQ 85 (122)
Q Consensus 70 g~~~~~---~glpPC~~C~ 85 (122)
|..+.+ ..++|||.|+
T Consensus 121 g~~~~~~~~~~l~~Cp~Cg 139 (147)
T K0C2Z3_CYCSP/2 121 KQTLNFKKTGHIPPCPTCH 139 (147)
T ss_pred CCEEEEeeCCCCCCCCCCC
No 78
>3OJ6_D Blasticidin-S deaminase; SSGCID, Blasticidin S deaminase, Seattle Structural Genomics Center for Infectious Disease, Hydrolase; HET: EDO; 1.7A {COCCIDIOIDES IMMITIS} SCOP: c.97.1.0
Probab=71.45 E-value=25 Score=25.78 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCC-----CCchhHHHHHHH
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIP-----ACPTCQDGIADF 91 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glp-----PC~~C~~~M~~F 91 (122)
.....|+|+..|..+.... ..++. .+-+.+ ... ||..|-+.|.+|
T Consensus 73 ~~~~~hAE~~ai~~a~~~~-~~~~~--~~~~~~-------------~~~~~~~~PC~~C~~~i~~~ 122 (158)
T 3OJ6_D 73 FNGGPCAELVVLGVAAAAG-ATKLT--HIVAIA-------------NEGRGILSPCGRCRQVLADL 122 (158)
T ss_dssp TTTCCCHHHHHHHHHHHTT-CCCEE--EEEEEE-------------TTTTEEECCCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCC-CCCeE--EEEEEe-------------CCCCcccCCCHHHHHHHHHH
No 79
>2HXV_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase; Oxidoreductase, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, biosynthetic protein; HET: GOL, NDP, MSE; 1.8A {Thermotoga maritima} SCOP: c.71.1.2, l.1.1.1, c.97.1.2
Probab=67.16 E-value=24 Score=29.24 Aligned_cols=48 Identities=29% Similarity=0.438 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCC------chhHHHHHHH
Q FD01845416_041 27 PFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC------PTCQDGIADF 91 (122)
Q Consensus 27 ~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC------~~C~~~M~~F 91 (122)
.+|......|+|..+|+.+...... |.|.+|-++. .|| |.|-..+..+
T Consensus 52 g~~~~~~~~HaE~~a~~~~~~~~~~--~~~~~~y~t~---------------ePC~~~~~~~~C~~~i~~~ 105 (360)
T 2HXV_A 52 GFHPYFGGPHAERMAIESARKKGED--LRGATLIVTL---------------EPCDHHGKTPPCTDLIIES 105 (360)
T ss_dssp EECCSTTSCCHHHHHHHHHHHTTCC--CTTCEEEEEE---------------CCCCSCSSSCCHHHHHHHH
T ss_pred EECCCCCCCcHHHHHHHHHHHhccc--cCCCEEEEec---------------CCCCCCCCCchHHHHHHHc
No 80
>2KOK_A arsenate reductase; arsenate reductase, brucellosis, zoonotic, OXIDOREDUCTASE, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID; NMR {Brucella abortus} SCOP: c.47.1.0, l.1.1.1
Probab=66.54 E-value=17 Score=23.70 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eeeccCCCCCchhHHHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~ 102 (122)
.+.+-..+.||.|.+... |.+++++.+...
T Consensus 6 ~i~~~~~~~c~~c~~~~~-~l~~~~~~~~~~ 35 (120)
T 2KOK_A 6 SVTIYGIKNCDTMKKARI-WLEDHGIDYTFH 35 (120)
T ss_dssp CEEEEECSSCHHHHHHHH-HHHHHTCCEEEE
T ss_pred eEEEEEcCCCHHHHHHHH-HHHHcCCCeEEE
No 81
>2JNV_A NifU-like protein 1, chloroplast; iron-sulfur cluster binding, program for rice genome reserch, Structural Genomics, NPPSFA, National Project on Protein Structural; NMR {Oryza sativa} SCOP: d.52.8.0, l.1.1.1
Probab=63.16 E-value=14 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred cchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchh
Q FD01845416_041 35 GHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTC 84 (122)
Q Consensus 35 ~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C 84 (122)
...++++-+-|+.-...-.-.||.+++.+ +++..+.+.-...|..|
T Consensus 4 ~~~~~~i~~~l~~irp~l~~~gg~vel~~----~~~~~v~l~l~g~c~~C 49 (91)
T 2JNV_A 4 PLTAGNVESVLDQVRPYLTADGGDVALHE----IAGNVVRLKLQGACGSC 49 (91)
T ss_dssp SSCTTHHHHHHTTTHHHHTTTTCCEEEEE----ECSSEEEEEECCCSSSS
T ss_pred cccHHHHHHHHHHHHHHHHhcCcEEEEEE----EeCCEEEEEEEccCCCC
No 82
>6K63_A Cytidine deaminase; Klebsiella pneumoniae, cytidine deaminase, HYDROLASE, CDA; HET: DIO; 2.073A {Klebsiella pneumoniae subsp. pneumoniae MGH 78578} SCOP: c.97.1.1
Probab=59.20 E-value=35 Score=28.30 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEE
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNI 99 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~I 99 (122)
.+.+-|+|+-.+..+-.. +.-..-++-+.. +||-.|-+.|.+|....++.|
T Consensus 97 ~~~~~~aE~~ai~~a~~~---g~~~~~~i~v~~---------------~PCG~Crq~l~e~~~~~~~~i 147 (294)
T 6K63_A 97 MQQTVHAEQSAISHAWLR---GETSLRAITVNY---------------TPCGHCRQFMNELNSGLALRI 147 (294)
T ss_dssp GGGCBCHHHHHHHHHHHT---TCCCEEEEEESS---------------CCCHHHHHHHTTBTTGGGCEE
T ss_pred cCCcccHHHHHHHHHHHC---CCCceeEEEEEe---------------CCCHHHHHHHHHhcCCCcEEE
No 83
>4EG2_D Cytidine deaminase; Cytidine deaminase, UMP synthesis, ZN binding, Hydrolase, Structural Genomics, Center for Structural Genomics of Infectious Diseases; HET: ACT, MSE, URI; 2.2A {Vibrio cholerae} SCOP: c.97.1.0, l.1.1.1
Probab=57.18 E-value=42 Score=28.29 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHHcCCEE
Q FD01845416_041 30 GYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKNKKMNI 99 (122)
Q Consensus 30 ~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~I 99 (122)
..+.+-|+||-.+.++-.. ++-.--.+-|.. +||-.|-+.|.+|....++.|
T Consensus 99 ~~~~~ihAEq~ai~~a~~~---g~~~i~~i~v~~---------------~PCG~CRq~l~e~~~~~~~~i 150 (298)
T 4EG2_D 99 QLGQTVHAEQCAISHAWMK---GEKGVADITINF---------------SPCGHCRQFMNELTTASSLKI 150 (298)
T ss_dssp CGGGCBCHHHHHHHHHHHT---TCSCEEEEEESS---------------CCCHHHHHHHTTBTTTTTCEE
T ss_pred CCCCCccHHHHHHHHHHHC---CCCceeEEEEEc---------------CCcHHHHHHHHHhcCCCCcEE
No 84
>1XG8_A hypothetical protein SA0798; Structural genomics, Protein Structure Initative, MCSG, Staphylococcus aureus, PSI, Protein Structure Initiative, Midwest Center for Structural; 2.1A {Staphylococcus aureus subsp. aureus N315} SCOP: l.1.1.1, c.47.1.17
Probab=56.17 E-value=52 Score=22.40 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred ccccccCCeeeccCCCC-CchhH----------HHHHHHHHHcC-CEEEEEecCCC
Q FD01845416_041 64 LGQMMNNGTKHLSEIPA-CPTCQ----------DGIADFAKNKK-MNITYSWTDSS 107 (122)
Q Consensus 64 ~~~f~ng~~~~~~glpP-C~~C~----------~~M~~FA~~nk-m~ItY~~~~~~ 107 (122)
|..+++-..|.+-+.+. |+.|. ..+..+..+++ ..+.|...+..
T Consensus 1 ~~~~~~~~~i~v~~~~~~C~~C~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~ 56 (111)
T 1XG8_A 1 ANLYFQSNAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDIT 56 (111)
T ss_dssp CCTTSSCEEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETT
T ss_pred CCCCCCceEEEEeCCCCcCCCCCCCCChHHHHHHHHHHHHHHCCCCeEEEEEEECC
No 85
>8DQB_A 3-dehydroquinate dehydratase I; SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE; 2.5A {Klebsiella oxytoca}
Probab=55.71 E-value=38 Score=28.10 Aligned_cols=44 Identities=25% Similarity=0.415 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCC------chhHHHHHHH
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC------PTCQDGIADF 91 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC------~~C~~~M~~F 91 (122)
+|......|+|...++.+ ..+++|.+|-++. .|| |.|-..+.+.
T Consensus 50 ~~~~~~~~hae~~a~~~~-----~~~~~~~~ly~t~---------------ePc~~~~~~~~c~~~i~~~ 99 (375)
T 8DQB_A 50 FHYRAGEPHAEVHALRMA-----GDKAKGATAYVTL---------------EPCSHHGRTPPCCDALIAA 99 (375)
T ss_dssp ECCSTTSCCHHHHHHHHH-----GGGGTTCEEEESS---------------CCCSCC---CCHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHc-----chhcCCCEEEECC---------------CCcCCCCCChHHHHHHHHc
No 86
>2B3Z_B Riboflavin biosynthesis protein ribD; alpha/beta/alpha, deaminase domain and reductase domain, HYDROLASE, OXIDOREDUCTASE; 2.41A {Bacillus subtilis} SCOP: c.71.1.2, c.97.1.2
Probab=54.62 E-value=45 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCC------chhHHHHHH
Q FD01845416_041 27 PFNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC------PTCQDGIAD 90 (122)
Q Consensus 27 ~~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC------~~C~~~M~~ 90 (122)
.+|......|+|..+|+++ ...++|.+|-++. .|| |.|-..+..
T Consensus 52 g~~~~~~~~Hae~~a~~~~-----~~~~~~~~~y~t~---------------epc~~~~~~~~c~~~i~~ 101 (373)
T 2B3Z_B 52 GAHLKYGEAHAEVHAIHMA-----GAHAEGADIYVTL---------------EPCSHYGKTPPCAELIIN 101 (373)
T ss_dssp EECCSTTSCCHHHHHHHHH-----GGGGTTCEEEESS---------------CCCCCCCSSCCHHHHHHT
T ss_pred EeCCCCCCCCHHHHHHHHc-----hhccCCCEEEEec---------------CCCCCCCCChhHHHHHHH
No 87
>PF18749.5 ; SNAD3 ; Secreted Novel AID/APOBEC-like Deaminase 3
Probab=54.44 E-value=1e+02 Score=28.58 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred cccccchHHHHHHHHHhhcc-cccccCCeEEEeeccccccCCeeeccCCCCCch------hHHHHHHHH----HHcCCEE
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTY-SGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPT------CQDGIADFA----KNKKMNI 99 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~-~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~------C~~~M~~FA----~~nkm~I 99 (122)
+....|||..|+++|+.-.. .+.....++-|-+ --.||-. |+-.+..+| +++++..
T Consensus 98 ~~~~~HSEe~lI~~i~e~L~~~~~~~~~~I~IYT-------------~NSPCL~R~~~~pCM~~Li~kA~ew~~kYgi~T 164 (380)
T A0A1S3SUS0_SAL 98 KPLNIHTEKLLLEEVKQILKNNEKLRNTKLFIYT-------------LNSPCLQNSGHESCMDLLIKDSAELYKSYSIKT 164 (380)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCcccCCcEEEEEe-------------CCCchhcCCCCCCHHHHHHHHHHHHHHHhCCeE
Q ss_pred EEEecC
Q FD01845416_041 100 TYSWTD 105 (122)
Q Consensus 100 tY~~~~ 105 (122)
.-.+++
T Consensus 165 ~V~Ftk 170 (380)
T A0A1S3SUS0_SAL 165 IVGYSK 170 (380)
T ss_pred EEEEec
No 88
>5XOB_Z tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS; zinc ribbon, conformational change, TiaS, tRNA modification, Zinc finger engineering, LIGASE; HET: TPO; 2.48A {Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)}
Probab=53.38 E-value=15 Score=33.53 Aligned_cols=49 Identities=16% Similarity=0.460 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHhhcc---cccccCCeEEEeeccccccCCeeeccCCCCCchhHHHH
Q FD01845416_041 39 AKLLEHLDTSTY---SGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGI 88 (122)
Q Consensus 39 qklL~~le~~~~---~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M 88 (122)
+++++.|..-.. .+..+-++|.++.. ..+.-........|.||.|+..|
T Consensus 308 r~~~~~L~~GD~I~v~G~V~~~~InlEkl-~vl~~~~~~~~~nP~Cp~Cg~~m 359 (420)
T 5XOB_Z 308 RNVIRLLRKGDVVEVYGSMKKDTINLEKI-QIVELAEIWVEKNPICPSCGRRM 359 (420)
T ss_dssp HHHHHHCCTTCEEEEEEEEETTEEEEEEE-EECSCCCCEEEECCBCTTTCSBC
T ss_pred HHHHHHcCCCCEEEEEEEecCCEEEEEEE-EEEEccceeeccCCCCccCCCcc
No 89
>3G8Q_C Predicted RNA-binding protein, contains THUMP domain; cytidine deaminase, THUMP, ferredoxin-like domain, RNA BINDING PROTEIN; 2.4A {Methanopyrus kandleri}
Probab=53.17 E-value=38 Score=27.26 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred cccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 31 YGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 31 ~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
...+.|+|.-.+ ....+.|.+|-++. .||+.|...+.+.
T Consensus 39 ~~~~~HaE~~ai-------~~~~~~~~~ly~t~---------------~Pc~~C~~~i~~~ 77 (278)
T 3G8Q_C 39 EADDEHAERKLV-------RRHDVEGKVVFVTA---------------RPCLYCARELAEA 77 (278)
T ss_dssp ECSSSCHHHHHH-------HHBCCTTCEEEESS---------------CCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHH-------hCCCCCCCeEEEcC---------------CCCHHHHHHHHHc
No 90
>PF00578.25 ; AhpC-TSA ; AhpC/TSA family
Probab=50.44 E-value=39 Score=20.91 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred ccc---CCeEEEeeccccccCCeeeccCCCC--CchhHHHHHHHHHHcC
Q FD01845416_041 53 KLS---GSTLEMHSLGQMMNNGTKHLSEIPA--CPTCQDGIADFAKNKK 96 (122)
Q Consensus 53 ~L~---GstLeI~S~~~f~ng~~~~~~glpP--C~~C~~~M~~FA~~nk 96 (122)
++. |..+.+... .|+.+-+.-..+ |+.|...+..+.+-..
T Consensus 12 ~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~c~~c~~~~~~l~~~~~ 56 (127)
T Q8EW09_MALP2/1 12 KLDNFAICDVSLEDF----GKKIKIISCFPSIDTGVCDMQTKKLFSEYG 56 (127)
T ss_pred cCccCCceeEEhHHh----CCcEEEEEEccCCCCcchHHHHHHHHHHhh
No 91
>3KTB_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, transcription; HET: MSE, GOL; 2.1A {Bacteroides vulgatus}
Probab=50.37 E-value=71 Score=20.80 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cccCCeeeccCCCCC---chhH----------HHHHHHHHHcCCEEEEEe
Q FD01845416_041 67 MMNNGTKHLSEIPAC---PTCQ----------DGIADFAKNKKMNITYSW 103 (122)
Q Consensus 67 f~ng~~~~~~glpPC---~~C~----------~~M~~FA~~nkm~ItY~~ 103 (122)
+++-..+.+-+.+.| +.|. ....++..+.++.+.+..
T Consensus 1 ~~~~~~v~~~~~~~cc~~~~c~~~~~~~~~~~~~~~~~l~~~~i~~~~~~ 50 (106)
T 3KTB_A 1 SNAMKKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHN 50 (106)
T ss_dssp CCCCCCEEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCceEEEEEcCccCCCCCccCCCCCHHHHHHHHHHHHHHHCCCEEEEEe
No 92
>PF20097.3 ; DUF6487 ; Domain of unknown function (DUF6487)
Probab=50.23 E-value=5.6 Score=25.48 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CchhHHHHHH
Q FD01845416_041 81 CPTCQDGIAD 90 (122)
Q Consensus 81 C~~C~~~M~~ 90 (122)
||.|+..|..
T Consensus 1 CP~Cg~~Me~ 10 (69)
T C5EGD4_9FIRM/1 1 CPYCNQEMKK 10 (69)
T ss_pred CCCCCCcCcc
No 93
>3DMO_B Cytidine deaminase; BURKHOLDERIA, PSEUDOMALLEI, CYTIDINE, DEAMINASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, Hydrolase; HET: MRD; 1.6A {Burkholderia pseudomallei}
Probab=50.17 E-value=30 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.463 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred cCCCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 76 SEIPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 76 ~glpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
...+||..|-+.|.+|+. .++.|.+...+
T Consensus 91 ~~~~pcg~cr~~l~~~~~-~~~~i~~~~~~ 119 (138)
T 3DMO_B 91 GPIAPCGACRQVMIELGK-PTLEVVLTNMQ 119 (138)
T ss_dssp SSCCCCHHHHHHHHHHHC-TTCEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHCC-CCcEEEEECCC
No 94
>2GMG_A hypothetical protein Pf0610; winged-helix like protein with metal binding site, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics; NMR {Pyrococcus furiosus} SCOP: a.4.5.82, l.1.1.1
Probab=50.00 E-value=25 Score=25.30 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred hHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeecc--CCCCCchhH
Q FD01845416_041 37 SEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLS--EIPACPTCQ 85 (122)
Q Consensus 37 sEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~--glpPC~~C~ 85 (122)
++|.++++|.-.+.+-...|..+.+..--=---|..+... ....||.|+
T Consensus 41 ~~q~v~~~L~~~~~~~~~~g~~~~~~~~~C~~Cg~~f~~~~~~~~~CP~Cg 91 (105)
T 2GMG_A 41 SKKVILEDLKVISKIAKREGMVLLIKPAQCRKCGFVFKAEINIPSRCPKCK 91 (105)
T ss_dssp CHHHHHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBCCCCSSCCSSCSSSC
T ss_pred CHHHHHHHHHHHHHHHHHcCCccccceeEeCCCCCEEeccCCCCccCCCCC
No 95
>PF11239.12 ; DUF3040 ; Protein of unknown function (DUF3040)
Probab=49.42 E-value=24 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred cchHHHHHHHHHhhccccc
Q FD01845416_041 35 GHSEAKLLEHLDTSTYSGK 53 (122)
Q Consensus 35 ~hsEqklL~~le~~~~~~~ 53 (122)
++.||+.|++||.+....|
T Consensus 4 s~~Err~L~~IE~~L~~~D 22 (79)
T A0K0L1_ARTS2/1 4 SEHEKDILRQMEQSLHEDD 22 (79)
T ss_pred CHHHHHHHHHHHHHHcccC
No 96
>PF11290.12 ; DUF3090 ; Protein of unknown function (DUF3090)
Probab=48.50 E-value=9.6 Score=31.32 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred cCCCCCchhHHHH
Q FD01845416_041 76 SEIPACPTCQDGI 88 (122)
Q Consensus 76 ~glpPC~~C~~~M 88 (122)
.|-|+||.|+..|
T Consensus 170 aGRP~CplCg~Pi 182 (189)
T F5XRM6_MICPN/6 170 AGRPPCPFCLQPL 182 (189)
T ss_pred cCCCCCCCCCCcc
No 97
>1WJK_A C330018D20rik protein; glutaredoxin, thioredoxin fold, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: c.47.1.1, l.1.1.1
Probab=45.58 E-value=96 Score=17.99 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEecC
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSWTD 105 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~~~ 105 (122)
+...+.+-..+.|+.|......+...... |.+.+.+
T Consensus 15 ~~~~~~~~~~~~c~~c~~~~~~~~~~~~~-~~~~~~~ 50 (100)
T 1WJK_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR-FILQEVD 50 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSS-SEEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHhhcc-eEEEEee
No 98
>PF04777.17 ; Evr1_Alr ; Erv1 / Alr family
Probab=44.12 E-value=38 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCchhHHHHHHHHHHcC
Q FD01845416_041 80 ACPTCQDGIADFAKNKK 96 (122)
Q Consensus 80 PC~~C~~~M~~FA~~nk 96 (122)
||+.|..-+.++.+++.
T Consensus 38 pC~~C~~h~~~~~~~~~ 54 (93)
T A0A0D2VQ19_CAP 38 PCDYCADHMRGEMVTDK 54 (93)
T ss_pred CcHHHHHHHHHHHHhCC
No 99
>PF13652.10 ; QSregVF ; Putative quorum-sensing-regulated virulence factor
Probab=43.73 E-value=81 Score=21.78 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred hHHHHHHHHHHcCCEEEEEecCC-CCce---eEEE
Q FD01845416_041 84 CQDGIADFAKNKKMNITYSWTDS-SGVK---QTTK 114 (122)
Q Consensus 84 C~~~M~~FA~~nkm~ItY~~~~~-~~~~---~~~~ 114 (122)
|....-....+++..|.|.|.+. .|.. .+|.
T Consensus 72 C~~~~~~~~~~~G~~i~y~Y~~~~~g~~l~~~~i~ 106 (110)
T S6AHZ0_PSERE/2 72 CRNTGYRQLLARGAGLRYEFSEYKTNRPVSSERFT 106 (110)
T ss_pred ccCHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEEe
No 100
>8AW3_2 Deaminase, putative; ADAT inosine tRNA modification deaminase cryo-EM structure Trypanosoma brucei, RNA BINDING;{Trypanosoma brucei brucei}
Probab=43.52 E-value=60 Score=25.85 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred chHHHHHHHHHhhc----------------ccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 36 HSEAKLLEHLDTST----------------YSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 36 hsEqklL~~le~~~----------------~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
|+|...++.+.... ....|.+.+|-++. .||+.|-..+..+
T Consensus 90 HAE~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~---------------ePC~mC~~ai~~~ 146 (221)
T 8AW3_2 90 HAEFVAVEELLRQATAGTSENIGGGGNSGAVSQDLADYVLYVVV---------------EPCIMCAAMLLYN 146 (221)
T ss_dssp CSHHHHHHHHHHHC-------------------CCCCSEEEEEE---------------CCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCccCCCCCCCcccccccCCcEEEEee---------------ChHHHHHHHHHHC
No 101
>7PQ8_A Thiol:disulfide interchange protein DsbA; disulfide bond, thioredoxin fold, periplasmic, posttranslational modification, OXIDOREDUCTASE; HET: PG4; 1.329A {Campylobacter jejuni}
Probab=43.22 E-value=1e+02 Score=22.31 Aligned_cols=49 Identities=4% Similarity=0.063 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred ccCCeEEEeeccccccCCeeeccCCCCCchhH-----HHHHHHHHHc-CCEEEEE
Q FD01845416_041 54 LSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQ-----DGIADFAKNK-KMNITYS 102 (122)
Q Consensus 54 L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~-----~~M~~FA~~n-km~ItY~ 102 (122)
|.|-+-.+...+.--...++.+-..+-||.|. +.+.++.++. ++.|.|.
T Consensus 1 ~~~~~~~~~~~~~~~a~~~v~~~~d~~Cp~C~~~~~~~~l~~l~~~~~~v~~~~~ 55 (202)
T 7PQ8_A 1 MANNSFITLNPSLPNSENSVIEAFSYKCIHCYNHHKFGTLEKLREAFPNLHFKLY 55 (202)
T ss_dssp --CCSEEECSSCCSSCSSEEEEEECTTCHHHHHHHHHTHHHHHHHHCTTSEEEEE
T ss_pred CCCcceEEeCCCCCCCCCeEEEEEeccChhHHhhhccccHHHHHHHCCCCeEEEE
No 102
>4ZIL_B DSBA oxidoreductase; Oxidoreductase; 1.507A {Mycobacterium tuberculosis (H37Rv)}
Probab=43.09 E-value=73 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred eeeccCCCCCchh---HHHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTC---QDGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C---~~~M~~FA~~nkm~ItY~ 102 (122)
++.+--.+-||.| ...+..++.++++.|.|.
T Consensus 10 ~v~~f~d~~Cp~c~~~~~~l~~~~~~~~~~v~~~ 43 (220)
T 4ZIL_B 10 VADFWFDPLCPWCWITSRWILEVAKVRDIEVNFH 43 (220)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHhcCcEEEEE
No 103
>3HA9_A uncharacterized Thioredoxin-like protein; thioredoxin-like, aeropyrum, pernix, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, unknown; 1.7A {Aeropyrum pernix}
Probab=43.01 E-value=74 Score=20.64 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+.. +.|+.+-| -..+-|+.|...+..+.+
T Consensus 24 ~~~g~~~~~~~----~~gk~~~l~f~~~~c~~c~~~~~~l~~ 61 (165)
T 3HA9_A 24 TIDGEVISLNN----VGGDVVILWFMAAWCPSCVYMADLLDR 61 (165)
T ss_dssp BTTSCEECGGG----CCSSEEEEEEECTTCTTHHHHHHHHHH
T ss_pred eCCCeEEEccc----cCCcEEEEEEEccCCHHHHHHHHHHHH
No 104
>6WIS_A DUF411 domain-containing protein; metal resistance copper-binding protein, METAL BINDING PROTEIN; HET: MSE, GOL, ZN; 2.0A {Pseudomonas aeruginosa}
Probab=41.99 E-value=95 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 70 NGTKHLSEIPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 70 g~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
..++.|-..+-|+.|...+. |.+++++.++...
T Consensus 2 ~~~v~vY~~~~C~~C~~~~~-~L~~~G~~~~~~d 34 (126)
T 6WIS_A 2 PLAIDVHRDANCGCCKDWIK-HLEANGFKVTDHV 34 (126)
T ss_dssp CCEEEEEECTTBHHHHHHHH-HHHTTTCEEEEEE
T ss_pred CceEEEEeCCCChHHHHHHH-HHHHCCCeeEEEe
No 105
>2M5O_A NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Structural Genomics, Protein NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, BIOSYNTHETIC PROTEIN, Mitochondrial Protein; NMR {Homo sapiens}
Probab=41.82 E-value=58 Score=22.76 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred cchHHHHHHHHHh-hcccccccCCeEEEeeccccccCCeeeccCCCCCchh
Q FD01845416_041 35 GHSEAKLLEHLDT-STYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTC 84 (122)
Q Consensus 35 ~hsEqklL~~le~-~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C 84 (122)
...++++.+-|+. ....-.-.||.+++.+ +++..+.|.-...|..|
T Consensus 17 ~~~~~~i~~~l~~~i~p~l~~~gg~v~l~~----i~~~~v~l~l~G~C~~C 63 (97)
T 2M5O_A 17 DGVVAMIKELLDTRIRPTVQEDGGDVIYKG----FEDGIVQLKLQGSCTSC 63 (97)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHTCCEEEEE----EETTEEEEEECTTTTTS
T ss_pred chHHHHHHHHHHhchHHHHHhcCCEEEEEE----EeCCEEEEEEEecCCCC
No 106
>3L78_A Regulatory protein spx; transcription, transcriptional factor, STREPTOCOCCUS MUTANS, Disulfide bond, Redox-active center, Transcription regulation; 1.9A {Streptococcus mutans} SCOP: c.47.1.12
Probab=41.71 E-value=78 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred eeeccCCCCCchhHHHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~ 102 (122)
++.+-+.+.||.|...+. +..+..+.+.+.
T Consensus 1 ~~~~~~~~~c~~c~~~~~-~l~~~~~~~~~~ 30 (120)
T 3L78_A 1 MVTLFLSPSCTSCRKARA-WLNRHDVVFQEH 30 (120)
T ss_dssp CEEEEECSSCHHHHHHHH-HHHHTTCCEEEE
T ss_pred CeEEEeCCCCHHHHHHHH-HHHHCCCceEEE
No 107
>7BV5_D tRNA-specific adenosine deaminase subunit TAD3; deaminase, inosine, auto-inhibition, RNA binding protein, RNA modification, HYDROLASE; 2.8A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=41.57 E-value=64 Score=26.95 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred chHHHHHHHHHhhccccc--------ccCCeEEEeeccccccCCeeeccCCCCCchhHHHH
Q FD01845416_041 36 HSEAKLLEHLDTSTYSGK--------LSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGI 88 (122)
Q Consensus 36 hsEqklL~~le~~~~~~~--------L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M 88 (122)
|+|..+++.+........ +.|.+|-++- .||..|..++
T Consensus 222 Hae~~ai~~~a~~~~~~~~~~~~~Yl~~g~~ly~t~---------------EPC~mCa~al 267 (328)
T 7BV5_D 222 HSVMVGIRAVGERLREGVDEDANSYLCLDYDVYLTH---------------EPCSMCSMAL 267 (328)
T ss_dssp CHHHHHHHHHHHHHHSSCCSCTTCCTTTTCEEEEEE---------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCcccccEEEEEEc---------------ChhHHHHHHH
No 108
>7DRY_A CMP/dCMP-type deaminase domain-containing protein; deaminase, CDA fold, riboflavin, BIOSYNTHETIC PROTEIN; HET: SO4; 1.44A {Aspergillus oryzae RIB40}
Probab=40.73 E-value=1.9e+02 Score=23.38 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred ccchHHHHHHHHHhhccc--ccc---------cCCeEEEeeccccccCCeeeccCCCCCch-------hHHHHHHHHH--
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYS--GKL---------SGSTLEMHSLGQMMNNGTKHLSEIPACPT-------CQDGIADFAK-- 93 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~--~~L---------~GstLeI~S~~~f~ng~~~~~~glpPC~~-------C~~~M~~FA~-- 93 (122)
..|+|+.+|..+...... .+| .|.+|-++. .||.. |-.++..+.+
T Consensus 59 ~~HaE~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~lyvTl---------------ePC~~~~~~~~pC~~~i~~~~~~~ 123 (230)
T 7DRY_A 59 NTHAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTM---------------EPCGKRLSGNLPCVQRIIRTRQGD 123 (230)
T ss_dssp SCCHHHHHHHHHHHHTTSCGGGGGGTSCCCTTEEEEEEEEE---------------ECCSCCSSSSCCHHHHHHTTCBTT
T ss_pred CCCHHHHHHHHHHHHcCCChHHhHHhCCCCCCCCcEEEEec---------------CCCcccCCCCCcHHHHHHHhccCc
Q ss_pred -HcCCEEEEEecC
Q FD01845416_041 94 -NKKMNITYSWTD 105 (122)
Q Consensus 94 -~nkm~ItY~~~~ 105 (122)
..=-+|-|-..+
T Consensus 124 ~~~I~~vv~g~~~ 136 (230)
T 7DRY_A 124 RKGIQKIYFGVKE 136 (230)
T ss_dssp BCCEEEEEEEEEE
T ss_pred ccCCcEEEEEEcC
No 109
>PF04805.16 ; Pox_E10 ; E10-like protein conserved region
Probab=40.44 E-value=49 Score=20.86 Aligned_cols=18 Identities=11% Similarity=0.421 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCchhHHHHHHHHHHcCC
Q FD01845416_041 80 ACPTCQDGIADFAKNKKM 97 (122)
Q Consensus 80 PC~~C~~~M~~FA~~nkm 97 (122)
||+.|..-+.++.+++.+
T Consensus 17 PC~~C~~h~~~~~~~~~~ 34 (70)
T Q6TVU4_ORFSA/2 17 PCIACRRHATAAIEKNNV 34 (70)
T ss_pred CCHHHHHHHHHHHHhCCC
No 110
>PF08063.16 ; PADR1_Zn_ribbon ; PADR1 domain, zinc ribbon fold
Probab=39.97 E-value=21 Score=21.25 Aligned_cols=8 Identities=25% Similarity=1.078 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCCchhH
Q FD01845416_041 78 IPACPTCQ 85 (122)
Q Consensus 78 lpPC~~C~ 85 (122)
++|||.|+
T Consensus 2 l~~Cp~C~ 9 (42)
T E0VXB6_PEDHC/2 2 LKKCEKCK 9 (42)
T ss_pred CCCCCCCC
No 111
>PF11238.12 ; DUF3039 ; Protein of unknown function (DUF3039)
Probab=39.67 E-value=38 Score=23.10 Aligned_cols=15 Identities=27% Similarity=0.842 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred cCCCCCchhHHHHHH
Q FD01845416_041 76 SEIPACPTCQDGIAD 90 (122)
Q Consensus 76 ~glpPC~~C~~~M~~ 90 (122)
..+|.||.|.+....
T Consensus 41 ~~~pvCp~C~~i~~~ 55 (56)
T A0ZZX5_BIFAA/4 41 THYPVCPDCKRIYDE 55 (56)
T ss_pred CCCCCCHHHHHHHHh
No 112
>1L8D_B DNA double-strand break repair rad50 ATPase; zinc finger, rad50, DNA repair, Recombination, hook motif, REPLICATION; HET: CIT, PO4; 2.2A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.20 E-value=10 Score=25.42 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCchhHHHHHH
Q FD01845416_041 80 ACPTCQDGIAD 90 (122)
Q Consensus 80 PC~~C~~~M~~ 90 (122)
+||.|++.+.+
T Consensus 49 ~CP~C~q~l~~ 59 (112)
T 1L8D_B 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCCCCH
No 113
>3ZPG_A RIBD; REDUCTASE, DEAMINASE, HYDROLASE; HET: SO4, OXL, 5GP; 1.99A {ACINETOBACTER BAUMANNII} SCOP: c.97.1.0, c.71.1.0
Probab=37.53 E-value=1.4e+02 Score=25.08 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCcccccchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCC------chhHHHHHHH
Q FD01845416_041 28 FNGYGATGHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC------PTCQDGIADF 91 (122)
Q Consensus 28 ~n~~g~~~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC------~~C~~~M~~F 91 (122)
+|......|+|...++.... +++|.+|-++. .|| |.|-..+...
T Consensus 67 ~~~~~~~~Hae~~ai~~~~~-----~~~~~~ly~t~---------------~Pc~~~~~~~~c~~~i~~~ 116 (382)
T 3ZPG_A 67 FHPKAGQPHAEVFALRQAGE-----QAQGATAYVTL---------------EPCAHYGRTPPCAEALVKA 116 (382)
T ss_dssp ECCSTTSCCHHHHHHHHHGG-----GGTTCEEEEEE---------------CCCCSCSSSCCHHHHHHHT
T ss_pred eCCCCCCCCHHHHHHHHHHH-----hhCCCEEEEec---------------ccccCCCCCchHHHHHHHc
No 114
>1XHJ_A Nitrogen Fixation Protein NifU; Alpha-beta, NifU-like, Structural Genomics, Protein Structure Initiative, NESG, PSI, Northeast Structural Genomics Consortium, METAL BINDING PROTEIN; NMR {Staphylococcus epidermidis} SCOP: l.1.1.1, d.52.8.1
Probab=37.11 E-value=82 Score=21.47 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cchHHHHHHHHHhhcccccccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHH
Q FD01845416_041 35 GHSEAKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 35 ~hsEqklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~F 91 (122)
.+.++++-+.|+.....-.-.||.+++.+ +++..+.+.-...|..|......+
T Consensus 6 ~~~~~~i~~~l~~i~p~l~~~Gg~v~l~~----~~~~~v~l~l~g~c~~C~~~~~~l 58 (88)
T 1XHJ_A 6 PTMFDQVAEVIERLRPFLLRDGGDCTLVD----VEDGIVKLQLHGACGTCPSSTITL 58 (88)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCEEEEEE----CCSSEEEEEEESSCCSSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCceEEEEE----eeCCEEEEEEEecCCCCccHHHHH
No 115
>4GRF_A Putative thiol-disulfide oxidoreductase; OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics; HET: GSH; 1.76A {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=36.93 E-value=73 Score=20.25 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+.-..+ |+.|...+..+.+
T Consensus 16 ~~~g~~~~~~~~----~~k~~~v~f~~~~c~~c~~~~~~l~~ 53 (152)
T 4GRF_A 16 DLKGNSVSLNDF----KGKYVLVDFWFAGCSWCRKETPYLLK 53 (152)
T ss_dssp CTTSCEEEGGGG----TTSEEEEEEECTTCHHHHHTHHHHHH
T ss_pred cCCCCEEEHHHc----CCcEEEEEEEcCCCHHHHHHHHHHHH
No 116
>1TTZ_A conserved hypothetical protein; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1, l.1.1.1
Probab=36.81 E-value=1.3e+02 Score=17.07 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred eeeccCCCCCchhHHHHHHHHHHcCCEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNKKMNITY 101 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~nkm~ItY 101 (122)
.+.+-..+.|+.|...+..|.....+.+.+
T Consensus 2 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 31 (87)
T 1TTZ_A 2 ALTLYQRDDCHLCDQAVEALAQARAGAFFS 31 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEeCCCChhHHHHHHHHHHHhcCceEE
No 117
>3GWL_A FAD-linked sulfhydryl oxidase; HOMODIMER, FIVE-HELIX BUNDLE, Disulfide bond, FAD, Flavoprotein, Late protein, Oxidoreductase, Virulence; HET: FAD; 2.1A {African swine fever virus BA71V} SCOP: a.24.15.0, l.1.1.1
Probab=35.46 E-value=67 Score=21.26 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CCchhHHHHHHHHHHcCC
Q FD01845416_041 80 ACPTCQDGIADFAKNKKM 97 (122)
Q Consensus 80 PC~~C~~~M~~FA~~nkm 97 (122)
||+.|..-..++.+++..
T Consensus 46 pC~~C~~h~~~~~~~~~~ 63 (106)
T 3GWL_A 46 PCTRCQHHAFSYLTKNPL 63 (106)
T ss_dssp SCHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHCCC
No 118
>2F9S_A Thiol-disulfide oxidoreductase resA; Thioredoxin-like protein, Oxidoreductase; HET: MSE; 1.401A {Bacillus subtilis} SCOP: c.47.1.10
Probab=34.24 E-value=72 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+.. +.|+.+-|--..+ |+.|...+..+.+
T Consensus 13 ~~~g~~~~~~~----~~~~~~ll~f~~~~c~~c~~~~~~l~~ 50 (151)
T 2F9S_A 13 DTNGKRIELSD----LKGKGVFLNFWGTWCEPCKKEFPYMAN 50 (151)
T ss_dssp CTTCCEEEGGG----GTTSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEHHH----hCCCEEEEEEEcCCCHHHHHHHHHHHH
No 119
>2H30_A Peptide methionine sulfoxide reductase msrA/msrB; reduced, methionine sulfoxide, thiol-disulfide exchange, OXIDOREDUCTASE; HET: MSE; 1.6A {Neisseria gonorrhoeae} SCOP: c.47.1.10
Probab=33.92 E-value=1.6e+02 Score=18.96 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+.. ..|+.+-+ -.-+-|+.|...+..+.+
T Consensus 25 ~~~g~~~~~~~----~~gk~~vi~f~~~~c~~c~~~~~~~~~ 62 (164)
T 2H30_A 25 TADNRPASVYL----KKDKPTLIKFWASWCPLCLSELGQAEK 62 (164)
T ss_dssp ETTSSBGGGGC----CTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCeeEEee----cCCCcEEEEEEcCCCHHHHHHHHHHHH
No 120
>4OD7_B Thiol:disulfide interchange protein; Oxidative folding protein, virulence factor maturation protein, disulfide oxidoreductase, Thioredoxin, DsbA, Dithiol exchange, DsbB, Periplasmic, OXIDOREDUCTASE-PEPTIDE; HET: ACE, SCN; 1.597A {Proteus mirabilis} SCOP: c.47.1.13, l.1.1.1
Probab=33.64 E-value=1.8e+02 Score=20.19 Aligned_cols=47 Identities=13% Similarity=-0.066 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred cCCeEEEeeccccccCCeeeccCCCCCchhHHH------HHHHHHHc--CCEEEEE
Q FD01845416_041 55 SGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDG------IADFAKNK--KMNITYS 102 (122)
Q Consensus 55 ~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~------M~~FA~~n--km~ItY~ 102 (122)
+|.+..+...+.--.- ++.+-.-+-||.|... +..+.+.. ++.+.|.
T Consensus 7 ~~~~~~~~~~~~~~a~-~i~~f~d~~C~~C~~~~~~~~~l~~l~~~~~~~~~~~~~ 61 (190)
T 4OD7_B 7 EGKQYTNLSKPVAGAP-QVVEFFSFYSPHCYQFSEVYKVNSTVEKNVPENTKMARY 61 (190)
T ss_dssp BTTTEEECSSCCTTCC-SEEEEECTTCHHHCCCCCCSCHHHHHHHHSCTTCCEEEE
T ss_pred CCCcceecCCCCCCCC-eEEEEEecCChhHHHHHHhcccchHHHHhCCCCceEEEE
No 121
>2Z51_A NifU-like protein 2, chloroplast; CnfU, iron-sulfur cluster biosynthesis, Nif, METAL TRANSPORT; 1.35A {Arabidopsis thaliana} SCOP: d.52.8.0
Probab=33.46 E-value=1.9e+02 Score=21.51 Aligned_cols=53 Identities=6% Similarity=0.010 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred hHHHHHHHHHhhccccc-ccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHH
Q FD01845416_041 37 SEAKLLEHLDTSTYSGK-LSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKN 94 (122)
Q Consensus 37 sEqklL~~le~~~~~~~-L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~ 94 (122)
.+.++-+.|+.....-. ..||.+++.+ +.++.+.+.-..+|..| ..+.+..++
T Consensus 86 ~~~~v~~~l~~i~p~l~~~~gg~v~l~~----v~~~~v~v~l~g~c~~~-~t~~~~i~~ 139 (154)
T 2Z51_A 86 NEENIEKVLEEIRPYLIGTADGSLDLVE----IEDPIVKIRITGPAAGV-MTVRVAVTQ 139 (154)
T ss_dssp SHHHHHHHHHHHGGGCCGGGCCEEEEEE----EETTEEEEEEESGGGGC-HHHHHHHHH
T ss_pred ChhHHHHHHHHcHhhhcccCCceEEEEE----EeCCEEEEEEEcCCCch-HHHHHHHHH
No 122
>2P31_A Glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, Structural Genomics, Structural Genomics Consortium, SGC, OXIDOREDUCTASE; 2.0A {Homo sapiens} SCOP: c.47.1.0
Probab=33.13 E-value=85 Score=21.30 Aligned_cols=37 Identities=5% Similarity=0.262 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+.+. .|+.+-+.-..+ |+.|...+..+.+
T Consensus 36 ~~~g~~~~l~~~----~gk~~ll~f~~~~c~~c~~~~~~l~~ 73 (181)
T 2P31_A 36 NIRGKLVSLEKY----RGSVSLVVNVASECGFTDQHYRALQQ 73 (181)
T ss_dssp BTTSCEEEGGGG----TTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred EcCCcEEeHHHh----CCcEEEEEEecCCCCCCHHHHHHHHH
No 123
>3EUR_A uncharacterized protein; PSI2, MCSG, conserved protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function; HET: MSE; 1.3A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=32.77 E-value=1.7e+02 Score=18.67 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+.+. .|+.+-+ --.+-|+.|...+..+.+
T Consensus 18 ~~~g~~~~~~~~----~~k~~~l~~~~~~c~~c~~~~~~l~~ 55 (142)
T 3EUR_A 18 LDSGVKGTLYQF----PAEYTLLFINNPGCHACAEMIEGLKA 55 (142)
T ss_dssp ETTSCEEETTTC----CCSEEEEEECCSSSHHHHHHHHHHHH
T ss_pred cCCCCEEEeccC----CCcEEEEEEeCCCChHHHHHHHHHhh
No 124
>3D5J_B Glutaredoxin-2, mitochondrial; yeast Grx2-C30S, Electron transport, Mitochondrion, Redox-active center, Transit peptide, Transport, OXIDOREDUCTASE; HET: GSH; 1.91A {Saccharomyces cerevisiae} SCOP: c.47.1.0
Probab=32.65 E-value=93 Score=17.72 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
+...+.+-..+.||.|.....-+..
T Consensus 18 ~~~~~~~~~~~~c~~c~~~~~~~~~ 42 (112)
T 3D5J_B 18 GQKEVFVAAKTYCPYSKATLSTLFQ 42 (112)
T ss_dssp HHSSEEEEECTTCHHHHHHHCCCCC
T ss_pred hCCcEEEEECCCCHHHHHHHHHHHH
No 125
>3NPD_A putative secreted protein; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION; HET: MSE, SO4, CXS; 1.6A {Pseudomonas aeruginosa}
Probab=32.35 E-value=1.6e+02 Score=20.83 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hHHHHHHHHHHcCCEEEEEecCC-CCce-eEEEecC
Q FD01845416_041 84 CQDGIADFAKNKKMNITYSWTDS-SGVK-QTTKWDS 117 (122)
Q Consensus 84 C~~~M~~FA~~nkm~ItY~~~~~-~~~~-~~~~Y~~ 117 (122)
|....-....+++++|.|.|.+. .|.. -.+....
T Consensus 74 C~~~~~~~~~~~G~~i~y~Y~~~~~g~~l~~~~i~~ 109 (118)
T 3NPD_A 74 CSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDA 109 (118)
T ss_dssp HTCHHHHHHHTTTCEEEEEEEETTTCCEEEEEEECH
T ss_pred ccCHhHHHHHHCCCEEEEEEeeCCCCcEEEEEEEcH
No 126
>7NCV_A Glutaredoxin, CPYC type; Chlamydomonas reinhardtii glutaredoxin, OXIDOREDUCTASE; 1.5A {Chlamydomonas reinhardtii} SCOP: c.47.1.0
Probab=32.11 E-value=1.4e+02 Score=16.10 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=0.0 Template_Neff=14.400
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
+...+.+-..+.|+.|......+.......+.+..
T Consensus 15 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 49 (107)
T 7NCV_A 15 ASNKVIVYSKTYCPYCVKAKNALNQFIAGKYTVVE 49 (107)
T ss_dssp HHCSEEEEECSSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCeEEEEECCCCHHHHHHHHHHHHhcCCCeEEEE
No 127
>2D30_B cytidine deaminase; Purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, Structural Genomics, Structural Proteomics in Europe, SPINE; 2.4A {Bacillus anthracis} SCOP: c.97.1.1
Probab=31.63 E-value=54 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.886 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCCCchhHHHHHHHH
Q FD01845416_041 78 IPACPTCQDGIADFA 92 (122)
Q Consensus 78 lpPC~~C~~~M~~FA 92 (122)
+.||-.|-+.|.+|+
T Consensus 92 ~~PCg~Crq~l~e~~ 106 (141)
T 2D30_B 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHc
No 128
>7DS1_A CMP/dCMP-type deaminase domain-containing protein; deaminase, riboflavin, BIOSYNTHETIC PROTEIN; HET: HJL; 1.58A {Aspergillus oryzae RIB40}
Probab=31.59 E-value=2.4e+02 Score=22.49 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred ccchHHHHHHHHHhhcccc------------cccCCeEEEeeccccccCCeeeccCCCCCch-------hHHHHHH
Q FD01845416_041 34 TGHSEAKLLEHLDTSTYSG------------KLSGSTLEMHSLGQMMNNGTKHLSEIPACPT-------CQDGIAD 90 (122)
Q Consensus 34 ~~hsEqklL~~le~~~~~~------------~L~GstLeI~S~~~f~ng~~~~~~glpPC~~-------C~~~M~~ 90 (122)
..|+|+..+..+.... .. .+.|.+|-++. .||+. |-..+..
T Consensus 59 ~~HAE~~ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~ly~Tl---------------ePC~~~~~~~~~C~~~i~~ 118 (196)
T 7DS1_A 59 NTHAEQCCLSNYAAVH-SVPEDRVWEVLPSEPDRKLVMYVTM---------------EPCGKRLSGNLPCVQRIIR 118 (196)
T ss_dssp SCCHHHHHHHHHHHHT-TSCGGGGGGTSCCCTTEEEEEEEEE---------------CCCSCCTTCCCCHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc-CCChhhhHhhCCCCCCCCcEEEEec---------------CCcccccCCCCCHHHHHHH
No 129
>6EEZ_A DsbA-like disulfide oxidoreductase; Thiol-disulfide exchange protein, ISOMERASE; 2.25A {Wolbachia endosymbiont of Drosophila melanogaster}
Probab=31.44 E-value=1.5e+02 Score=20.34 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred eeeccCCCCCchhHHHHH---HHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIA---DFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~---~FA~~nkm~ItY~ 102 (122)
++.+-.-+-||.|..... +++.+.++.|.|.
T Consensus 36 ~i~~f~d~~C~~C~~~~~~l~~~~~~~~~~~~~~ 69 (190)
T 6EEZ_A 36 IAVGFLDYSCGHCKAIKNDIKQLINDGKIKYIFR 69 (190)
T ss_dssp EEEEEECTTCHHHHHTHHHHHHHHHTSSCEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHCCCcEEEEE
No 130
>6JLU_w PsbW; PSII-FCP supercomplex, PLANT PROTEIN; HET: CLA, KC2, SQD, OEX, PL9, DD6, LMG, PHO, DGD, BCR, LHG, A86, HEM, KC1; 3.02A {Chaetoceros gracilis}
Probab=31.28 E-value=36 Score=23.17 Aligned_cols=34 Identities=6% Similarity=0.124 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred cccCCeeec------cCCCCCchhHHHHHHHHHHcCCEEE
Q FD01845416_041 67 MMNNGTKHL------SEIPACPTCQDGIADFAKNKKMNIT 100 (122)
Q Consensus 67 f~ng~~~~~------~glpPC~~C~~~M~~FA~~nkm~It 100 (122)
|+||++..| ....-+.+=.+-|..+|+.|+|...
T Consensus 4 FvnGkp~~iEa~y~m~s~~eW~RFmRFMeRYa~~ngl~f~ 43 (51)
T 6JLU_w 4 FANGKPQSIEAKYIMRSPAEWDRFMRFMDRYAEANGLGFS 43 (51)
T ss_pred EeCCeeeeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCC
No 131
>3GV1_B Disulfide interchange protein; disulfide interchange protein, Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090), DsbC, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; HET: BEZ, MSE; 2.0A {Neisseria gonorrhoeae}
Probab=31.07 E-value=1.2e+02 Score=19.32 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred CchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 81 CPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 81 C~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
||.|...+..+.+-.+..+.+..
T Consensus 26 C~~C~~~~~~l~~~~~~~~~~~~ 48 (147)
T 3GV1_B 26 CPFCKRLEHEFEKMTDVTVYSFM 48 (147)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEE
T ss_pred CHHHHHHHHHHhhcCCeEEEEEe
No 132
>3HCZ_A Possible thiol-disulfide isomerase; APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: SO4; 1.88A {Cytophaga hutchinsonii} SCOP: c.47.1.0, l.1.1.1
Probab=30.76 E-value=2.2e+02 Score=17.89 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+ -..+-|+.|...+..+.+
T Consensus 18 ~~~g~~~~~~~~----~~~~~~l~f~~~~c~~c~~~~~~l~~ 55 (148)
T 3HCZ_A 18 DTTGTYRYLYDV----QAKYTILFFWDSQCGHCQQETPKLYD 55 (148)
T ss_dssp CTTSCBCCGGGC----CCSEEEEEEECGGGCTTCSHHHHHHH
T ss_pred cCCCCEEEeeec----CCCEEEEEEEcCCCHHHHHHHHHHHH
No 133
>PF01106.21 ; NifU ; NifU-like domain
Probab=30.75 E-value=2e+02 Score=17.33 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred cCCeEEEeeccccccCC-eeeccCCCCCchh-------HHHHHHHHHHc
Q FD01845416_041 55 SGSTLEMHSLGQMMNNG-TKHLSEIPACPTC-------QDGIADFAKNK 95 (122)
Q Consensus 55 ~GstLeI~S~~~f~ng~-~~~~~glpPC~~C-------~~~M~~FA~~n 95 (122)
.|+.+++.+ +++. .+.+.-..+|..| ...+....+++
T Consensus 15 ~gg~v~l~~----~~~~~~~~~~~~g~c~~c~~~~~~~~~~i~~~l~~~ 59 (67)
T E1QGN9_DESB2/5 15 DGGDVKLVD----VSDDGVVKVQLQGACHGCPMSQMTLKMGIEKVLKQN 59 (67)
T ss_pred cCCEEEEEE----ECCCcEEEEEEecCCCCCcchHHHHHHHHHHHHHHh
No 134
>3RDW_A Putative arsenate reductase; structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, arsenate reductase, OXIDOREDUCTASE; 2.2A {Yersinia pestis} SCOP: c.47.1.0
Probab=30.68 E-value=1.4e+02 Score=19.28 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred CeeeccCCCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 71 GTKHLSEIPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 71 ~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
..+.+-..+-|+.| ..+..+.+++++.+.+..
T Consensus 5 ~~i~~~~~~~c~~c-~~~~~~l~~~~~~~~~~~ 36 (121)
T 3RDW_A 5 KDVTIYHNPRCSKS-RETLALVEQQGITPQVVL 36 (121)
T ss_dssp -CCEEECCTTCHHH-HHHHHHHHTTTCCCEEEC
T ss_pred ceEEEEeCCCCHHH-HHHHHHHHHCCCCCEEEE
No 135
>5GOX_A DNA repair protein RAD50; DNA repair, HYDROLASE; HET: MSE, GOL; 2.405A {Homo sapiens}
Probab=30.54 E-value=22 Score=25.72 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCchhHHHH
Q FD01845416_041 79 PACPTCQDGI 88 (122)
Q Consensus 79 pPC~~C~~~M 88 (122)
.+||.|++.|
T Consensus 99 ~~Cp~C~r~~ 108 (186)
T 5GOX_A 99 SCCPVCQRVF 108 (186)
T ss_dssp CBCSSSCCBC
T ss_pred CCCCCCCCCC
No 136
>2CQ9_A GLRX2 protein; glutaredoxin, glutaredoxin 2, glutathione-S-transferase, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN; NMR {Homo sapiens} SCOP: c.47.1.0, l.1.1.1
Probab=30.20 E-value=1.8e+02 Score=18.13 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
+...+.+-..+.|+.|.. +..+..+..+.+.+..
T Consensus 25 ~~~~~~~~~~~~c~~~~~-~~~~l~~~~~~~~~~~ 58 (130)
T 2CQ9_A 25 SDNCVVIFSKTSCSYCTM-AKKLFHDMNVNYKVVE 58 (130)
T ss_dssp HHSSEEEEECSSCSHHHH-HHHHHHHHTCCCEEEE
T ss_pred hcCeEEEEECCCCHHHHH-HHHHHHHCCCCeEEEE
No 137
>2KHP_A GLUTAREDOXIN; Glutaredoxin, Thioredoxin type domain, SSGCID, ELECTRON TRANSPORT, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease; NMR {Brucella melitensis} SCOP: c.47.1.0, l.1.1.1
Probab=30.10 E-value=1.6e+02 Score=16.00 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred cccCCeeeccCCCCCchhHHHHHHHHHHcCCEEEE
Q FD01845416_041 67 MMNNGTKHLSEIPACPTCQDGIADFAKNKKMNITY 101 (122)
Q Consensus 67 f~ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY 101 (122)
++....+.+-..+.|+.|.. +..+....+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 35 (92)
T 2KHP_A 2 PGSMVDVIIYTRPGCPYCAR-AKALLARKGAEFNE 35 (92)
T ss_dssp CCCCCCEEEEECTTCHHHHH-HHHHHHHTTCCCEE
T ss_pred CCCcceEEEEECCCCHHHHH-HHHHHHHcCCCcEE
No 138
>PF19796.3 ; DUF6280 ; Family of unknown function (DUF6280)
Probab=29.57 E-value=88 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred CCCCCchhHHHHHHHHHH
Q FD01845416_041 77 EIPACPTCQDGIADFAKN 94 (122)
Q Consensus 77 glpPC~~C~~~M~~FA~~ 94 (122)
|+.|+++|=..|.+|..+
T Consensus 53 GiDp~er~v~~~~~fV~~ 70 (88)
T A0A1H4DW10_9RH 53 GIDPTERAVGGLAEFVRR 70 (88)
T ss_pred CCCCChHHHHHHHHHHHh
No 139
>4IHU_B Isomerase DsbG; thioredoxin, disulfide bond isomerase, redox, OXIDOREDUCTASE; HET: MSE; 1.896A {Mycobacterium tuberculosis}
Probab=29.56 E-value=2.6e+02 Score=20.61 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred ccCCeEEEeeccccccCC------eeeccCCCCCchhHHH-------HHHHHHHcCCEEEEE
Q FD01845416_041 54 LSGSTLEMHSLGQMMNNG------TKHLSEIPACPTCQDG-------IADFAKNKKMNITYS 102 (122)
Q Consensus 54 L~GstLeI~S~~~f~ng~------~~~~~glpPC~~C~~~-------M~~FA~~nkm~ItY~ 102 (122)
|.+..+.+.+...+-+.. +|.+-.-+-||.|... +.+|....++.|.|.
T Consensus 12 ~~~~~~~~~~~~~~g~~~~~~~~~~i~~f~d~~Cp~c~~~~~~l~~~~~~~~~~~~v~v~~~ 73 (224)
T 4IHU_B 12 GPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYT 73 (224)
T ss_dssp SCTTSEEECCTTCCBCTTSCCBSCEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCceeccCCccccCCCCCCCCcEEEEEECCCChHHHHHHHHhHHHHHHHhhcCCeEEEEE
No 140
>4HDE_A SCO1/SenC family lipoprotein; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy; HET: MSE; 1.317A {Bacillus anthracis} SCOP: c.47.1.0, l.1.1.1
Probab=29.22 E-value=1.7e+02 Score=18.71 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred cccCCeEEEeeccccccCCeeec----cCCCC-CchhHHHHHHHHHHcC
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL----SEIPA-CPTCQDGIADFAKNKK 96 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~----~glpP-C~~C~~~M~~FA~~nk 96 (122)
++.|..+.+... .|+.+-+ ...++ |+.|...|.++....+
T Consensus 19 ~~~g~~~~~~~~----~gk~~~l~~~~~~c~~~c~~~~~~l~~~~~~~~ 63 (170)
T 4HDE_A 19 NQDGKPFGTKDL----KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAK 63 (170)
T ss_dssp CTTSCEEEHHHH----TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeeeeHHh----CCCEEEEEEecCCCCCccHHHHHHHHHHHHHHH
No 141
>PF18745.5 ; SNAD2 ; Secreted Novel AID/APOBEC-like Deaminase 2
Probab=29.21 E-value=72 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred ccchHHHHHHH-------HHhhcccccccCCeEEEeeccccccCCeeeccCCCCC-chh
Q FD01845416_041 34 TGHSEAKLLEH-------LDTSTYSGKLSGSTLEMHSLGQMMNNGTKHLSEIPAC-PTC 84 (122)
Q Consensus 34 ~~hsEqklL~~-------le~~~~~~~L~GstLeI~S~~~f~ng~~~~~~glpPC-~~C 84 (122)
..|||-+||.. |++...... .++=|-+-| -..|| ..|
T Consensus 79 ~~HaE~rlL~~~~~~~sp~~~ll~~~~-~~~cliFyt-------------~~SPC~~~C 123 (200)
T A0A1L8HVL8_XEN 79 AVHAEARLLNGKGGAPSPVQNLLNINQ-DKGCVLFYT-------------LNSPCTRYC 123 (200)
T ss_pred ccccchHHcCCCCCCCCHHHHHHhcCC-CCCeEEEEE-------------CCCCchHHc
No 142
>6MWS_A Glutaredoxin-1; Glutaredoxin 1, yeast Saccharomyces cerevisiae, OXIDOREDUCTASE; 1.22A {Saccharomyces cerevisiae S288c}
Probab=28.96 E-value=1.2e+02 Score=17.42 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
+...+.+-..+.||.|.....-+..
T Consensus 20 ~~~~~~~~~~~~c~~c~~~~~~l~~ 44 (115)
T 6MWS_A 20 AENEIFVASKTYCPYCHAALNTLFE 44 (115)
T ss_dssp HHCSEEEEECTTCHHHHHHHHCCCC
T ss_pred hcCcEEEEeCCCCHHHHHHHHHHHH
No 143
>PF01323.24 ; DSBA ; DSBA-like thioredoxin domain
Probab=28.85 E-value=1.3e+02 Score=20.62 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred eeeccCCCCCchh---HHHHHHHHHHc----CCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTC---QDGIADFAKNK----KMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C---~~~M~~FA~~n----km~ItY~ 102 (122)
+|.+-.-+-||.| ...+.++.++. ++.|.|.
T Consensus 1 ~v~~f~d~~Cp~c~~~~~~l~~~~~~~~~~~~~~~~~~ 38 (201)
T Q9PBK9_XYLFA/4 1 EIEIWSDVICPWCWIGKRRLERALRNSSLFAHIRVRHR 38 (201)
T ss_pred CceEEEecCChhHHHHHHHHHHHHHhCCCCCcEEEEEe
No 144
>PF07315.15 ; DUF1462 ; Protein of unknown function (DUF1462)
Probab=28.85 E-value=1e+02 Score=20.30 Aligned_cols=31 Identities=10% Similarity=0.394 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred ccCCCCCchhHHH----------HHHHHHHcCCE-EEEEecC
Q FD01845416_041 75 LSEIPACPTCQDG----------IADFAKNKKMN-ITYSWTD 105 (122)
Q Consensus 75 ~~glpPC~~C~~~----------M~~FA~~nkm~-ItY~~~~ 105 (122)
.....+||.|... ...++.++.-. |.+.+-+
T Consensus 3 ~~~~~~C~~C~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~id 44 (88)
T C4L4W8_EXISA/4 3 YGAEVQCASCVGAPSSTETYEWLQSALGRKYPEQSFSFEYID 44 (88)
T ss_pred cCCCCCCCccCCCCCcHHHHHHHHHHHHHHCCCCeEEEEEEe
No 145
>3GKX_A Putative ArsC family related protein; Bacteroides fragilis, ArsC family protein, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: MSE; 2.2A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=28.80 E-value=1e+02 Score=19.64 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred eeeccCCCCCchhHHHHHHHHHHc
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNK 95 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~n 95 (122)
.+.+-..+-||.|...+.-+.+.+
T Consensus 5 ~i~~~~~~~c~~c~~~~~~l~~~~ 28 (120)
T 3GKX_A 5 KTLFLQYPACSTCQKAKKWLIENN 28 (120)
T ss_dssp CCEEEECTTCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCC
No 146
>2FY6_A Peptide methionine sulfoxide reductase msrA/msrB; PILB, Cytochrome maturation protein, Thioredoxin, Methionine sulfoxide reductase, OXIDOREDUCTASE; 1.9A {Neisseria meningitidis} SCOP: c.47.1.10
Probab=28.58 E-value=2e+02 Score=17.87 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+.. ..|+.+-+ -.-+-|+.|...+..+.+
T Consensus 10 ~~~g~~~~~~~----~~~~~~ll~f~~~~c~~c~~~~~~l~~ 47 (143)
T 2FY6_A 10 TADNRPASVYL----KKDKPTLIKFWASWCPLCLSELGQTEK 47 (143)
T ss_dssp ETTSCBGGGGC----CTTSCEEEEEECTTCHHHHTTHHHHHH
T ss_pred cCCCCcceeee----cCCCcEEEEEECCCCHHHHHHHHHHHH
No 147
>1ABA_A GLUTAREDOXIN; ELECTRON TRANSPORT; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1
Probab=28.54 E-value=1.6e+02 Score=16.84 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred eeeccCCCC----CchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 72 TKHLSEIPA----CPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 72 ~~~~~glpP----C~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
.+.+-..+. |+.|.. +..+...+++.+....
T Consensus 1 ~~~~~~~~~~~~~c~~~~~-~~~~~~~~~~~~~~~~ 35 (87)
T 1ABA_A 1 MFKVYGYDSNIHKCGPCDN-AKRLLTVKKQPFEFIN 35 (87)
T ss_dssp CEEEEECCTTTSCCHHHHH-HHHHHHHTTCCEEEEE
T ss_pred CeEEEEecCCCccCcccHH-HHHHHHHCCCCcEEEE
No 148
>4WF5_B Thiol:disulfide interchange protein; DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, DSBA, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex; HET: WF4; 1.45A {Escherichia coli BL21(DE3)} SCOP: c.47.1.13
Probab=28.29 E-value=1.3e+02 Score=20.90 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred eeeccCCCCCchhHHH------HHHHHHHc--CCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDG------IADFAKNK--KMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~------M~~FA~~n--km~ItY~ 102 (122)
++.+-.-+-||.|... +..++++. ++.|.|.
T Consensus 21 ~v~~~~d~~Cp~c~~~~~~~~~l~~l~~~~~~~i~~~~~ 59 (189)
T 4WF5_B 21 QVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 59 (189)
T ss_dssp SEEEEECTTCHHHHCCCCCCCSCC-CGGGCCTTCCEEEE
T ss_pred eEEEEEeeeChhHHHHhHHhhccHHHHHHCCCCceEEEE
No 149
>1NM3_B Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, ELECTRON TRANSPORT; HET: MSE, SO4; 2.8A {Haemophilus influenzae} SCOP: c.47.1.10, c.47.1.1
Probab=28.25 E-value=73 Score=22.68 Aligned_cols=41 Identities=17% Similarity=0.385 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC--Cchh-HHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA--CPTC-QDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP--C~~C-~~~M~~FA~ 93 (122)
++.|....=.+...+..|+.+.|--.+. |+.| ...|.+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~c~~~~~~~l~~ 59 (241)
T 1NM3_B 16 TRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNE 59 (241)
T ss_dssp EEETTEEEEEEHHHHHTTSEEEEEEESCTTSCCSSTTHHHHHHH
T ss_pred EeeCCeeEEEeHHHHcCCCeEEEEEccCCCCCCCchhccchHHH
No 150
>PF04423.18 ; Rad50_zn_hook ; Rad50 zinc hook motif
Probab=28.20 E-value=18 Score=21.09 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCchhHHHHHH
Q FD01845416_041 79 PACPTCQDGIAD 90 (122)
Q Consensus 79 pPC~~C~~~M~~ 90 (122)
+.||.|++.|..
T Consensus 22 ~~CP~C~~~l~~ 33 (54)
T RAD50_AERPE/44 22 ARCPVCGAELPP 33 (54)
T ss_pred CCCCCCCCCCCh
No 151
>2P5Q_A Glutathione peroxidase 5; Thioredoxin fold, OXIDOREDUCTASE; HET: CD, ACT; 2.0A {Populus trichocarpa x Populus deltoides} SCOP: c.47.1.0
Probab=27.77 E-value=1.3e+02 Score=19.03 Aligned_cols=37 Identities=5% Similarity=0.192 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
+..|..+.+.+ +.|+.+-+ -..+-|+.|...+..+.+
T Consensus 19 ~~~g~~~~~~~----~~gk~~~~~f~~~~c~~c~~~~~~l~~ 56 (170)
T 2P5Q_A 19 DAKENDVDLSI----FKGKVLLIVNVASKCGMTNSNYAEMNQ 56 (170)
T ss_dssp BTTSCEEEGGG----GTTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred eCCCCeEeHHH----hCCcEEEEEEecCCCccchHHHHHHHH
No 152
>PF13453.10 ; zf-TFIIB ; Transcription factor zinc-finger
Probab=27.71 E-value=9.6 Score=22.22 Aligned_cols=20 Identities=15% Similarity=0.624 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CchhHHHHHHHHHHcCCEEEE
Q FD01845416_041 81 CPTCQDGIADFAKNKKMNITY 101 (122)
Q Consensus 81 C~~C~~~M~~FA~~nkm~ItY 101 (122)
||.|...|..+.. .++.|.+
T Consensus 2 CP~C~~~l~~~~~-~~~~~~~ 21 (42)
T B8FEF9_DESAL/2 2 CPNCAQAMEEVLV-QSTAVDV 21 (42)
T ss_pred CCCCCCCCeEEEe-CCEEEEe
No 153
>3EWL_A uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: MSE; 2.0A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=27.62 E-value=1.3e+02 Score=18.87 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+ -.-+.|+.|...+..+.+
T Consensus 14 ~~~g~~~~l~~~----~~k~~ll~f~~~~c~~c~~~~~~~~~ 51 (142)
T 3EWL_A 14 TVHGDNSRMSRL----KAQYTMLFFYDPDCSNCRKFEKLFAE 51 (142)
T ss_dssp CTTCCEEEGGGC----CCSEEEEEECCSSCHHHHHHHHHHHT
T ss_pred EecCCeeeHHHh----cCCEEEEEEeCCCCHHHHHHHHHHhh
No 154
>4MJE_A Probable glutaredoxin ssr2061; thioredoxin motif, oxidation/reduction, ELECTRON TRANSPORT; HET: SO4; 1.2A {Synechocystis sp.} SCOP: c.47.1.0
Probab=27.61 E-value=1.8e+02 Score=17.12 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred eeeccCCCCCchhHHHHHHHHHHcCCEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNKKMNITY 101 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~nkm~ItY 101 (122)
.+.+.+.+.||.|.. ...++...++.+.+
T Consensus 17 ~~~~~~~~~c~~~~~-~~~~~~~~~~~~~~ 45 (99)
T 4MJE_A 17 KIEIYTWSTCPFCMR-ALALLKLKGVEFQE 45 (99)
T ss_dssp CEEEEECTTCHHHHH-HHHHHHHHTCCCEE
T ss_pred eEEEEECCCCHHHHH-HHHHHHHcCCceEE
No 155
>2E7P_C Glutaredoxin; THIOREDOXIN FOLD, GLUTAREDOXIN, POPLAR, ELECTRON TRANSPORT; HET: GSH; 2.1A {Populus tremula x Populus tremuloides}
Probab=27.35 E-value=1.3e+02 Score=17.37 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
++..+.+-..+.|+.|...+..|..
T Consensus 18 ~~~~~~~~~~~~c~~c~~~~~~~~~ 42 (116)
T 2E7P_C 18 SSAPVVVFSKTYCGYCNRVKQLLTQ 42 (116)
T ss_dssp HSSSEEEEECTTCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHH
No 156
>6ZFF_A DNA double-strand break repair Rad50 ATPase; double strand break repair, DNA damge response, scaffold, closed coiled coil arms, DNA; 3.0A {Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)}
Probab=27.18 E-value=28 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCchhHHHHHHHHHH
Q FD01845416_041 80 ACPTCQDGIADFAKN 94 (122)
Q Consensus 80 PC~~C~~~M~~FA~~ 94 (122)
+||.|++.+.+-.+.
T Consensus 67 ~CP~C~q~l~~~~~~ 81 (140)
T 6ZFF_A 67 KCPVCGRELTDEHRE 81 (140)
T ss_dssp ----CCCCCCTTTTT
T ss_pred CCCCCCCCCCHHHHH
No 157
>5VNY_A Lethal (2) giant discs 1, isoform B; ESCRT, ENDOCYTOSIS, PROTEIN BINDING; HET: MSE; 1.101A {Drosophila melanogaster}
Probab=27.05 E-value=44 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred cCCeeeccCCCCCchh
Q FD01845416_041 69 NNGTKHLSEIPACPTC 84 (122)
Q Consensus 69 ng~~~~~~glpPC~~C 84 (122)
.|+.|.+..+||.|.|
T Consensus 50 ~G~~i~~~~lP~pP~~ 65 (66)
T 5VNY_A 50 AGKPVPYDELPVPPGF 65 (66)
T ss_dssp TTCCCCGGGSCCCTTC
T ss_pred CCCCCCHHHCCCCCCC
No 158
>2JVN_A Poly [ADP-ribose] polymerase 1; protein, PARP, ADP-ribosylation, DNA damage, DNA repair, DNA-binding, Glycosyltransferase, Metal-binding, NAD, Nucleus, Phosphorylation, Transferase, Zinc-finger; HET: ZN; NMR {Homo sapiens}
Probab=27.02 E-value=50 Score=24.24 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred eeccCCCCCchhH
Q FD01845416_041 73 KHLSEIPACPTCQ 85 (122)
Q Consensus 73 ~~~~glpPC~~C~ 85 (122)
+....++|||.|+
T Consensus 55 ~~fG~l~~Cp~C~ 67 (126)
T 2JVN_A 55 MVFGALLPCEECS 67 (126)
T ss_dssp HHHTEECCCCSSS
T ss_pred cccCCCcCCCcCC
No 159
>PF13778.10 ; DUF4174 ; Domain of unknown function (DUF4174)
Probab=26.98 E-value=67 Score=20.33 Aligned_cols=16 Identities=0% Similarity=-0.064 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CchhHHHHHHHHHHcC
Q FD01845416_041 81 CPTCQDGIADFAKNKK 96 (122)
Q Consensus 81 C~~C~~~M~~FA~~nk 96 (122)
||.|...|.++.+...
T Consensus 21 ~~~~~~~~~~l~~~~~ 36 (112)
T F4L4R4_HALH1/2 21 DTALNRQLTLMQEYEA 36 (112)
T ss_pred CHHHHHHHHHHHHcHH
No 160
>1RW1_A conserved hypothetical protein yffB; thioredoxin fold, Structure 2 Function Project, S2F, Structural Genomics, UNKNOWN FUNCTION; HET: IPA, MSE; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=26.90 E-value=88 Score=20.06 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred eeeccCCCCCchhHHHHHHH
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADF 91 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~F 91 (122)
.+.+-..+.|+.|...+.-|
T Consensus 1 ~i~~~~~~~c~~c~~~~~~~ 20 (114)
T 1RW1_A 1 TYVLYGIKACDTMKKARTWL 20 (114)
T ss_dssp CEEEEECSSCHHHHHHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHH
No 161
>PF18048.5 ; TRAF6_Z2 ; TNF receptor-associated factor 6 zinc finger 2
Probab=26.73 E-value=19 Score=19.64 Aligned_cols=9 Identities=44% Similarity=1.187 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCchhHHHH
Q FD01845416_041 80 ACPTCQDGI 88 (122)
Q Consensus 80 PC~~C~~~M 88 (122)
|||.|+..+
T Consensus 5 ~C~~C~~~~ 13 (27)
T A0A1U8C5B2_MES 5 NCPQCQRPF 13 (27)
T ss_pred eCcccCCEE
No 162
>3IOS_A Disulfide bond forming protein (DsbF); thioredoxin fold, disulfide bond forming protein, isomerase, Lipoprotein, OXIDOREDUCTASE; 1.6A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=26.70 E-value=1.6e+02 Score=19.37 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+--..+ |+.|...+..+.+
T Consensus 26 ~~~g~~~~~~~~----~~k~~vv~f~~~~c~~c~~~~~~l~~ 63 (150)
T 3IOS_A 26 TLDGHDFHGESL----LGKPAVLWFWAPWCPTCQGEAPVVGQ 63 (150)
T ss_dssp BTTSCEEEGGGG----TTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred eCCCCEEEchhh----CCceEEEEEECCCCHHHhhHHHHHHH
No 163
>PF04606.16 ; Ogr_Delta ; Ogr/Delta-like zinc finger
Probab=26.61 E-value=24 Score=20.49 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCchhHHHH
Q FD01845416_041 80 ACPTCQDGI 88 (122)
Q Consensus 80 PC~~C~~~M 88 (122)
+||.|+..|
T Consensus 1 ~CP~C~~~~ 9 (47)
T Q8XY59_RALSO/4 1 KCPHCGSRM 9 (47)
T ss_pred CCCCCCCee
No 164
>3P7X_C Probable thiol peroxidase; THIOREDOXIN FOLD, OXIDOREDUCTASE, PEROXIDASE; HET: SO4, PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=26.59 E-value=1.2e+02 Score=20.11 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC--CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA--CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP--C~~C~~~M~~FA~ 93 (122)
+..|..+.+.. +.|+.+-+--..+ |+.|...+..+.+
T Consensus 33 ~~~g~~~~l~~----~~~k~~~l~f~~~~~c~~c~~~~~~l~~ 71 (166)
T 3P7X_C 33 DNDLNQVTLAD----YAGKKKLISVVPSIDTGVCDQQTRKFNS 71 (166)
T ss_dssp CTTSCEEEGGG----GTTSCEEEEECSCTTSHHHHHHHHHHHH
T ss_pred CCCCCeeeHHH----HCCCeEEEEEecCCCcccCHHHHHHHHH
No 165
>PF00462.28 ; Glutaredoxin ; Glutaredoxin
Probab=26.53 E-value=1.2e+02 Score=13.53 Aligned_cols=28 Identities=18% Similarity=0.594 Sum_probs=0.0 Template_Neff=15.100
Q ss_pred eeccCCCCCchhHHHHHHHHHHcCCEEEE
Q FD01845416_041 73 KHLSEIPACPTCQDGIADFAKNKKMNITY 101 (122)
Q Consensus 73 ~~~~glpPC~~C~~~M~~FA~~nkm~ItY 101 (122)
+.+-..+.|+.|.. +..+..+..+.+.+
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 28 (61)
T Q9RZ82_DEIRA/1 1 ITVYTVPDCPDCEA-VQALLRRRGLTPTV 28 (61)
T ss_pred CEEEeCCCChHHHH-HHHHHHHCCCCCEE
No 166
>4Z7X_B MdbA; thiol-disulfide oxidoreductase, structural genomics, Midwest Center for Structural Genomics, MCSG, PSI-Biology, OXIDOREDUCTASE; HET: MSE, 3CX; 1.55A {Actinomyces oris}
Probab=26.44 E-value=3e+02 Score=20.59 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred cCCeEEEeeccccc----cCCeeeccCCCCCchhHHHH-------HHHHHHcCCEEEEE
Q FD01845416_041 55 SGSTLEMHSLGQMM----NNGTKHLSEIPACPTCQDGI-------ADFAKNKKMNITYS 102 (122)
Q Consensus 55 ~GstLeI~S~~~f~----ng~~~~~~glpPC~~C~~~M-------~~FA~~nkm~ItY~ 102 (122)
.++.+.+.+.+... +.++|.+-.-+-||.|.... .+|....++.|.|.
T Consensus 37 ~~~~~~~~~~~~~~~g~~~a~~i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~i~~~~~ 95 (238)
T 4Z7X_B 37 SDASWTYGEGAALDTVAASAPVLDIYFDYSCSHCAQFEGLHTQEINQLLSDKKITLALH 95 (238)
T ss_dssp TTSCEEESCC--------CCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceEecccccccccCCCCCEEEEEEcCCCHHHHHHHHHhHHHHHHHHhCCCeEEEEE
No 167
>6MN3_B Aminoglycoside N(3)-acetyltransferase, AAC(3)-IVa; ANTIBIOTIC_NAT FAMILY, ACETYLTRANSFERASE, AMINOGLYCOSIDE, ANTIBIOTIC RESISTANCE, COENZYME A, AAC(3)-IVA, CSGID, TRANSFERASE, CENTER FOR STRUCTURAL GENOMICS OF; 2.4A {Escherichia coli}
Probab=26.28 E-value=1.9e+02 Score=23.72 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHhhcc--cccccCCeEEEeeccccc--------cCCeeeccCCCC-CchhHHHHHH
Q FD01845416_041 39 AKLLEHLDTSTY--SGKLSGSTLEMHSLGQMM--------NNGTKHLSEIPA-CPTCQDGIAD 90 (122)
Q Consensus 39 qklL~~le~~~~--~~~L~GstLeI~S~~~f~--------ng~~~~~~glpP-C~~C~~~M~~ 90 (122)
.++.+.|+..-- ...+.++.+.+.+...++ ++..+-+...++ |+.|..+..+
T Consensus 196 ~~~~~~l~~~g~~~~~~~g~~~i~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 258 (260)
T 6MN3_B 196 ALADRWLKEKSLQKEGPVGHAFARLIRSRDIVATALGQLGRDPLIFLHPPEAGCEECDAARQS 258 (260)
T ss_dssp GHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHCTTTTSCCGGGCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEECCeEEEEEEHHHHHHHHHHHHhhCCccccCCCCCCChhhHHHHHh
No 168
>1Z3E_A Regulatory protein spx; bacterial transcription regulation, disulfide stress, TRANSCRIPTION; HET: SO4; 1.5A {Bacillus subtilis} SCOP: l.1.1.1, c.47.1.12
Probab=26.21 E-value=1.7e+02 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred eeeccCCCCCchhHHHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~ 102 (122)
.+.+-..+-||.|...+..+.+ +++.+.+.
T Consensus 2 ~i~~~~~~~c~~c~~~~~~l~~-~~~~~~~~ 31 (132)
T 1Z3E_A 2 MVTLYTSPSCTSCRKARAWLEE-HEIPFVER 31 (132)
T ss_dssp CEEEEECTTCHHHHHHHHHHHH-TTCCEEEE
T ss_pred ceEEEeCCCCHHHHHHHHHHHH-CCCCcEEE
No 169
>3KIJ_C Probable glutathione peroxidase 8; Human PDI-peroxidase, glutathione peroxidase, Membrane, Oxidoreductase, Peroxidase, Transmembrane; 1.8A {Homo sapiens} SCOP: c.47.1.0
Probab=26.15 E-value=1.3e+02 Score=20.02 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+.-..+ |+.|...+..+.+
T Consensus 25 ~~~g~~~~~~~~----~g~~~lv~f~~~~c~~c~~~~~~l~~ 62 (180)
T 3KIJ_C 25 DAKGRTVSLEKY----KGKVSLVVNVASDCQLTDRNYLGLKE 62 (180)
T ss_dssp BTTSCEEEGGGG----TTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCCEeeHHHh----CCcEEEEEEeCCCCcccHHHHHHHHH
No 170
>4NMU_B Thiol-disulfide oxidoreductase ResA; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; HET: ACY, EDO, MSE, GOL; 1.35A {Bacillus anthracis} SCOP: c.47.1.0
Probab=26.12 E-value=1.5e+02 Score=18.95 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
+..|..+.+... .|+.+-+--..+ |+.|...+..+.+
T Consensus 22 ~~~g~~~~~~~~----~~k~~~v~~~~~~c~~c~~~~~~l~~ 59 (147)
T 4NMU_B 22 DLEGKKIELKDL----KGKGVFLNFWGTWCKPCEKEMPYMNE 59 (147)
T ss_dssp BTTSCEEEGGGG----BTBEEEEEEECTTCHHHHHHHHHHHH
T ss_pred eCCCCEEehhHh----CCcEEEEEEECCCCHHHHHHHHHHHH
No 171
>PF10825.12 ; DUF2752 ; Protein of unknown function (DUF2752)
Probab=25.99 E-value=45 Score=21.45 Aligned_cols=6 Identities=50% Similarity=1.641 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CCchhH
Q FD01845416_041 80 ACPTCQ 85 (122)
Q Consensus 80 PC~~C~ 85 (122)
|||.|+
T Consensus 10 ~Cp~CG 15 (49)
T A4CMV6_ROBBH/4 10 SCPGCG 15 (49)
T ss_pred CCCCCC
No 172
>PF18279.5 ; zf-WRNIP1_ubi ; Werner helicase-interacting protein 1 ubiquitin-binding domain
Probab=25.97 E-value=33 Score=17.52 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCCCchhHHHHHH
Q FD01845416_041 77 EIPACPTCQDGIAD 90 (122)
Q Consensus 77 glpPC~~C~~~M~~ 90 (122)
....||-|+..|..
T Consensus 1 ~~~~CPvC~~~v~~ 14 (21)
T G3TDI9_LOXAF/1 1 HQVQCPVCQQMMPA 14 (21)
T ss_pred CCccCCCCCCcccH
No 173
>2LQO_A Putative glutaredoxin Rv3198.1/MT3292; Trx fold, OXIDOREDUCTASE; NMR {Mycobacterium tuberculosis} SCOP: c.47.1.0, l.1.1.1
Probab=25.94 E-value=1.5e+02 Score=16.53 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred ccCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 68 MNNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 68 ~ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
|+...+.+-..+-|+.|......+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (92)
T 2LQO_A 1 MVTAALTIYTTSWCGYCLRLKTALTA 26 (92)
T ss_dssp CCSSCEEEEECTTCSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHH
No 174
>PF15643.10 ; Tox-PL-2 ; Papain fold toxin 2
Probab=25.64 E-value=1.2e+02 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CCCCCchhHHHHHHHHHHcCCE
Q FD01845416_041 77 EIPACPTCQDGIADFAKNKKMN 98 (122)
Q Consensus 77 glpPC~~C~~~M~~FA~~nkm~ 98 (122)
++..|..|...|.++.+++++.
T Consensus 14 ~~~~C~e~A~~i~~~l~~~gi~ 35 (101)
T K9WUF0_9NOST/7 14 KNLECVECAQNIQDYLISQGVQ 35 (101)
T ss_pred CCcCcHHHHHHHHHHHHHCCCC
No 175
>PF14421.10 ; LmjF365940-deam ; LmjF365940 subfamily CDD/CDA-like deaminase
Probab=25.55 E-value=3e+02 Score=25.96 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=0.0 Template_Neff=3.100
Q ss_pred CCCCCchhHHHHHHHHHHcCCEEEEEecCCCCceeEEE
Q FD01845416_041 77 EIPACPTCQDGIADFAKNKKMNITYSWTDSSGVKQTTK 114 (122)
Q Consensus 77 glpPC~~C~~~M~~FA~~nkm~ItY~~~~~~~~~~~~~ 114 (122)
.+.||-.|++-+...|.-|.----|..++..-+.+.+.
T Consensus 289 PL~PCGaC~ewL~KIae~np~f~v~tF~~~~c~~vy~~ 326 (329)
T D7G3E7_ECTSI/5 289 PLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIE 326 (329)
T ss_pred CCCCCcHHHHHHHHHHHHCCCcEEEEEcCCccceeEEE
No 176
>1NUI_B DNA primase/helicase; zinc-biding domain, TOPRIM fold, DNA replication, DNA-directed RNA polymerase, Primosome, Late protein, ATP-binding, Transferase, REPLICATION; 2.9A {Enterobacteria phage T7} SCOP: g.41.3.2, e.13.1.2
Probab=25.43 E-value=44 Score=24.09 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CCchhH
Q FD01845416_041 80 ACPTCQ 85 (122)
Q Consensus 80 PC~~C~ 85 (122)
|||.|+
T Consensus 16 ~CP~c~ 21 (255)
T 1NUI_B 16 PCDNCG 21 (255)
T ss_dssp CCTTTT
T ss_pred ccCCCC
No 177
>1H75_A GLUTAREDOXIN-LIKE PROTEIN NRDH; ELECTRON TRANSPORT, NRDH, THIOREDOXIN, GLUTAREDOXIN, REDOX PROTEIN; 1.7A {ESCHERICHIA COLI} SCOP: c.47.1.1
Probab=25.40 E-value=1.4e+02 Score=17.24 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 71 GTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 71 ~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
..+.+-..+.|+.|.....-|..
T Consensus 1 ~~~~~~~~~~c~~c~~~~~~l~~ 23 (81)
T 1H75_A 1 MRITIYTRNDCVQCHATKRAMEN 23 (81)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHH
No 178
>6BO0_A MdbA protein; MdbA, disulfide, oxidoreductase, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID; HET: CSO, PG4; 1.2A {Corynebacterium matruchotii ATCC 14266}
Probab=25.26 E-value=2.1e+02 Score=20.34 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred eeeccCCCCCchhHHHHH----HHHH---HcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGIA----DFAK---NKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~----~FA~---~nkm~ItY~ 102 (122)
+|.+-.-+-||.|..... ...+ ..++.|.|.
T Consensus 40 ~v~~~~d~~Cp~c~~~~~~l~~~l~~~~~~~~v~~~~~ 77 (200)
T 6BO0_A 40 TVDIYEDFSCHYCSQLAKETDADMKKLIEDGKVKVNIR 77 (200)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHchHHHHHHHHCCCeEEEEE
No 179
>3GWN_B Probable FAD-linked sulfhydryl oxidase R596; FIVE HELIX BUNDLE, HOMODIMER, Disulfide bond, FAD, Flavoprotein, Oxidoreductase, Virion; HET: FAD, SO4; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=25.07 E-value=1.1e+02 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCchhHHHHHHHHHHc
Q FD01845416_041 80 ACPTCQDGIADFAKNK 95 (122)
Q Consensus 80 PC~~C~~~M~~FA~~n 95 (122)
||+.|..-..++.+.+
T Consensus 48 pC~~C~~h~~~~~~~~ 63 (114)
T 3GWN_B 48 PCRLCRESYKKFITTG 63 (114)
T ss_dssp SSHHHHHHHHHHTTSG
T ss_pred CCHHHHHHHHHHHHhC
No 180
>PF04267.16 ; SoxD ; Sarcosine oxidase, delta subunit family
Probab=24.81 E-value=40 Score=24.38 Aligned_cols=8 Identities=38% Similarity=1.136 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCchhHHH
Q FD01845416_041 80 ACPTCQDG 87 (122)
Q Consensus 80 PC~~C~~~ 87 (122)
|||.|+.+
T Consensus 3 ~CP~CG~R 10 (82)
T D5BSQ1_PUNMI/3 3 DCPHCGPR 10 (82)
T ss_pred cCCCCCcc
No 181
>3KGK_A Arsenical resistance operon trans-acting repressor arsD; alpha+beta, Arsenical resistance, Chaperone, DNA-binding, Repressor, Transcription, Transcription regulation; 1.4A {Escherichia coli}
Probab=24.66 E-value=2.7e+02 Score=19.44 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CeeeccCCCCCchhH-------------HHHHHHHHHcCCEEEEEe
Q FD01845416_041 71 GTKHLSEIPACPTCQ-------------DGIADFAKNKKMNITYSW 103 (122)
Q Consensus 71 ~~~~~~glpPC~~C~-------------~~M~~FA~~nkm~ItY~~ 103 (122)
..|.+-..+-|+.|+ ....++.+++++.+++..
T Consensus 2 ~~i~vy~~~~c~~~~~C~~~~~~~~~~~~~~~~~l~~~~i~~~~~~ 47 (110)
T 3KGK_A 2 KTLMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERFN 47 (110)
T ss_dssp CCEEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceEEEecCcccccccccCCccCHHHHHHHHHHHHHHHCCCeEEEEE
No 182
>1JR8_A Erv2 PROTEIN, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, OXIDOREDUCTASE; HET: FAD; 1.5A {Saccharomyces cerevisiae} SCOP: a.24.15.1
Probab=24.43 E-value=1.1e+02 Score=20.93 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCchhHHHHHHHHHHcCCEE
Q FD01845416_041 80 ACPTCQDGIADFAKNKKMNI 99 (122)
Q Consensus 80 PC~~C~~~M~~FA~~nkm~I 99 (122)
||+.|..-..++.+++...+
T Consensus 50 pC~~C~~h~~~~~~~~~~~~ 69 (117)
T 1JR8_A 50 PCGECSYHFVKLIEKYPVQT 69 (117)
T ss_dssp SSHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCC
No 183
>2RT9_A F-box only protein 43; zinc-finger domain, METAL BINDING PROTEIN; HET: ZN; NMR {Mus musculus}
Probab=24.04 E-value=51 Score=18.20 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCeEEEeeccccccCCeeeccCCCCCchhH
Q FD01845416_041 56 GSTLEMHSLGQMMNNGTKHLSEIPACPTCQ 85 (122)
Q Consensus 56 GstLeI~S~~~f~ng~~~~~~glpPC~~C~ 85 (122)
|++|.+.. -....|||.|.
T Consensus 1 ~~~~~l~~-----------~~~~~~~p~c~ 19 (59)
T 2RT9_A 1 GSSGSSGT-----------DEALKPCPRCQ 19 (59)
T ss_dssp -------C-----------CCCCCBCTTTC
T ss_pred CCcccccC-----------CCceEECCCCC
No 184
>8AP6_c subunit-8; ATP synthase, mitochondria, MEMBRANE PROTEIN; HET: LMT, MG, UTP, AME, ATP, Q7G, ADP, PEE, PC1, CDL; 3.2A {Trypanosoma brucei brucei}
Probab=24.01 E-value=55 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred hHHHHHHHHHhhcc--cccccCCeE
Q FD01845416_041 37 SEAKLLEHLDTSTY--SGKLSGSTL 59 (122)
Q Consensus 37 sEqklL~~le~~~~--~~~L~GstL 59 (122)
+||||.|.|+..+- ..+|.-+++
T Consensus 80 ~EqKLrRvLDet~TeWt~eld~s~i 104 (114)
T 8AP6_c 80 AEQKLRRVLDETYTEWTEELDQAHV 104 (114)
T ss_pred HHHHHHHHHHHhhcccchhhhHHHH
No 185
>4E0H_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, Flavin-linked sulfhydryl oxidase, FAD binding, oxidation, mitochondrial intermembrane space, OXIDOREDUCTASE; HET: FAD; 2.0A {Saccharomyces cerevisiae} SCOP: l.1.1.1, a.24.15.0
Probab=23.99 E-value=1.2e+02 Score=19.19 Aligned_cols=16 Identities=13% Similarity=0.615 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCchhHHHHHHHHHHc
Q FD01845416_041 80 ACPTCQDGIADFAKNK 95 (122)
Q Consensus 80 PC~~C~~~M~~FA~~n 95 (122)
||+.|..-..++.+.+
T Consensus 46 pc~~c~~~~~~~~~~~ 61 (106)
T 4E0H_A 46 PCNWCAKDFEKYIREN 61 (106)
T ss_dssp SSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHc
No 186
>3IPZ_A Monothiol glutaredoxin-S14, chloroplastic; glutaredoxin, monothiol, Chloroplast, Electron transport, Plastid, Redox-active center, Transit peptide, Transport, OXIDOREDUCTASE; 2.4A {Arabidopsis thaliana} SCOP: c.47.1.0
Probab=23.80 E-value=2.4e+02 Score=15.92 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred CCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 79 PACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 79 pPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
+.||.|.. +..+....++...+..
T Consensus 31 ~~~~~~~~-~~~~~~~~~~~~~~~~ 54 (109)
T 3IPZ_A 31 PMCGFSNT-VVQILKNLNVPFEDVN 54 (109)
T ss_dssp BSSHHHHH-HHHHHHHTTCCCEEEE
T ss_pred CCChHHHH-HHHHHHHcCCCcEEEE
No 187
>1R4W_D Glutathione S-transferase, mitochondrial; glutathione-S-transferase, glutathione transferase, kappa GST, rGSTK1-1, TRANSFERASE; HET: GSH; 2.5A {Rattus norvegicus} SCOP: c.47.1.13
Probab=23.75 E-value=1.9e+02 Score=20.80 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred eeeccCCCCCchh---HHHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTC---QDGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C---~~~M~~FA~~nkm~ItY~ 102 (122)
+|.+-.-+-||.| ...+..++.+.++.|.|.
T Consensus 7 ~i~~f~d~~cp~c~~~~~~l~~~~~~~~~~~~~~ 40 (226)
T 1R4W_D 7 VLELFYDVLSPYSWLGFEVLCRYQHLWNIKLKLR 40 (226)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHHHhCCEEEEE
No 188
>PF03960.19 ; ArsC ; ArsC family
Probab=23.69 E-value=1.3e+02 Score=19.16 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCCCchhHHHHHHHHHHc
Q FD01845416_041 77 EIPACPTCQDGIADFAKNK 95 (122)
Q Consensus 77 glpPC~~C~~~M~~FA~~n 95 (122)
..+.|+.|...+..+...+
T Consensus 2 ~~~~c~~c~~~~~~l~~~~ 20 (116)
T Y266_MYCPN/16- 2 ISSSCSSCQKAIEYFKENN 20 (116)
T ss_pred CCCCCHHHHHHHHHHHHCC
No 189
>2M6O_A Uncharacterized protein; RbpA, RNAP, Sigma factor, TRANSCRIPTION; NMR {Streptomyces coelicolor}
Probab=23.49 E-value=62 Score=19.21 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred cCCCCCchhH
Q FD01845416_041 76 SEIPACPTCQ 85 (122)
Q Consensus 76 ~glpPC~~C~ 85 (122)
....+||.|+
T Consensus 24 ~~~~~Cp~Cg 33 (48)
T 2M6O_A 24 PPEWECKVCG 33 (48)
T ss_dssp CSEEECSSSS
T ss_pred CCCccCCCCC
No 190
>3ZYW_A GLUTAREDOXIN-3; METAL BINDING PROTEIN; HET: EDO; 1.84A {HOMO SAPIENS} SCOP: c.47.1.1, l.1.1.1
Probab=23.29 E-value=2.6e+02 Score=16.18 Aligned_cols=24 Identities=8% Similarity=0.292 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred CCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 79 PACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 79 pPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
+.|+.|.. ...+..+.++.+.+..
T Consensus 29 ~~~~~~~~-~~~~~~~~~~~~~~~~ 52 (111)
T 3ZYW_A 29 PRCGFSKQ-MVEILHKHNIQFSSFD 52 (111)
T ss_dssp BSSHHHHH-HHHHHHHTTCCCEEEE
T ss_pred CCCHHHHH-HHHHHHHCCCcEEEEE
No 191
>3IC4_A Glutaredoxin (Grx-1); glutaredoxin(grx-1), structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics, OXIDOREDUCTASE; HET: MSE; 1.7A {Archaeoglobus fulgidus} SCOP: c.47.1.0, l.1.1.1
Probab=23.09 E-value=1.8e+02 Score=15.75 Aligned_cols=22 Identities=14% Similarity=0.504 Sum_probs=0.0 Template_Neff=13.700
Q ss_pred eeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 72 TKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M~~FA~ 93 (122)
.+.+-..+.|+.|...+..+..
T Consensus 13 ~~~~~~~~~c~~c~~~~~~~~~ 34 (92)
T 3IC4_A 13 EVLMYGLSTCPHCKRTLEFLKR 34 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
No 192
>PF20833.1 ; RNase_E_G_Thio ; RNase E/G, Thioredoxin-like domain
Probab=23.05 E-value=57 Score=19.39 Aligned_cols=6 Identities=50% Similarity=1.774 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCchhH
Q FD01845416_041 80 ACPTCQ 85 (122)
Q Consensus 80 PC~~C~ 85 (122)
|||.|+
T Consensus 1 ~c~~c~ 6 (86)
T A0A3N1Y5S7_9GA 1 VCPRCK 6 (86)
T ss_pred CCCCCc
No 193
>3TK0_A FAD-linked sulfhydryl oxidase ALR; Flavin, flavoprotein, sulfhydryl oxidase, FAD, GFER, ALR; HET: FAD; 1.611A {Homo sapiens} SCOP: a.24.15.1, l.1.1.1
Probab=22.86 E-value=1.3e+02 Score=20.20 Aligned_cols=16 Identities=6% Similarity=0.270 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCchhHHHHHHHHHHc
Q FD01845416_041 80 ACPTCQDGIADFAKNK 95 (122)
Q Consensus 80 PC~~C~~~M~~FA~~n 95 (122)
||+.|..-+.++.+++
T Consensus 62 pC~~c~~~~~~~~~~~ 77 (126)
T 3TK0_A 62 PSEECAEDLRKRLARN 77 (126)
T ss_dssp SSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhc
No 194
>4K9Z_A Putative thiol-disulfide oxidoreductase; PUTATIVE DISULFIDE OXIDOREDUCTASE, NYSGRC, Structural Genomics, New York Structural Genomics Research Consortium, PSI-Biology, OXIDOREDUCTASE; 1.8A {Bacteroides vulgatus} SCOP: c.47.1.0
Probab=22.48 E-value=2.5e+02 Score=18.57 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+.-..+ |+.|...+..+.+
T Consensus 34 ~~~g~~~~~~~~----~~k~~~v~f~~~~c~~c~~~~~~l~~ 71 (168)
T 4K9Z_A 34 DVEGNVKHLADF----KGKVIYIDLWATWCGPCIQESPAFEA 71 (168)
T ss_dssp CTTCCEEEGGGG----TTSEEEEEEECTTCHHHHHTHHHHHH
T ss_pred eCCCCEEEeeec----CCCEEEEEEECCCChHhHHhcHHHHH
No 195
>3KZQ_D Putative uncharacterized protein VP2116; Protein with unknown function, Vibrio parahaemolyticus, Structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for; HET: PG6, GOL; 2.1A {Vibrio parahaemolyticus}
Probab=22.36 E-value=2.9e+02 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred eeeccCCCCCchh---HHHHHHHHHHcC--CEEEEE
Q FD01845416_041 72 TKHLSEIPACPTC---QDGIADFAKNKK--MNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C---~~~M~~FA~~nk--m~ItY~ 102 (122)
.|.+-.-+-||.| ...+.++.++++ +.|.|.
T Consensus 4 ~i~~~~d~~Cp~c~~~~~~l~~~~~~~~~~~~i~~~ 39 (208)
T 3KZQ_D 4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYV 39 (208)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred EEEEEeCCCcHHHhhchHHHHHHHHHCCCceEEEEE
No 196
>4MZC_A Glutaredoxin; glutathione, sulfur-SAD, active site, plasticity, TRX fold, redox enzyme, OXIDOREDUCTASE; HET: MPO, MPD; 0.949A {Plasmodium falciparum} SCOP: c.47.1.0
Probab=22.30 E-value=1.6e+02 Score=16.43 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=0.0 Template_Neff=14.000
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
+...+.+-..+.|+.|......+..
T Consensus 17 ~~~~~~~~~~~~c~~~~~~~~~~~~ 41 (111)
T 4MZC_A 17 EENIIAVFAKTECPYCIKAISILKG 41 (111)
T ss_dssp HHCSEEEEECTTCHHHHHHHHHHHH
T ss_pred HcCcEEEEECCCCHHHHHHHHHHHh
No 197
>2IMF_A 2-hydroxychromene-2-carboxylate isomerase; isomerase, glutathione, kgst, kappa gst, TRANSFERASE; HET: GSH, TOM, PO4, CXS; 1.3A {Pseudomonas putida}
Probab=22.30 E-value=2.7e+02 Score=19.52 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred eeeccCCCCCchhH---HHHHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQ---DGIADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~---~~M~~FA~~nkm~ItY~ 102 (122)
++.+-.-+-||.|. ..+.+++.+.++.|.|.
T Consensus 2 ~v~~~~d~~cp~c~~~~~~l~~~~~~~~~~v~~~ 35 (203)
T 2IMF_A 2 IVDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYN 35 (203)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred eEEEEEccCCHHHHHHHHHHHHHHHHHCCEEEEE
No 198
>PF19148.4 ; DUF5830 ; Family of unknown function (DUF5830)
Probab=22.26 E-value=1.5e+02 Score=23.92 Aligned_cols=48 Identities=8% Similarity=0.158 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred HHHHHHHHhhcccccccCCeEEEeeccccc--cCCeeeccCCCCCchhHHHH
Q FD01845416_041 39 AKLLEHLDTSTYSGKLSGSTLEMHSLGQMM--NNGTKHLSEIPACPTCQDGI 88 (122)
Q Consensus 39 qklL~~le~~~~~~~L~GstLeI~S~~~f~--ng~~~~~~glpPC~~C~~~M 88 (122)
+++|..++.+- --+-.++++.+.+.+ |. .-+.+.-.+.--|-+|+..|
T Consensus 37 r~ILd~Ae~rG-iIeRe~~~v~~~~~~-~v~Fe~~Vv~rege~~CrRCG~~l 86 (114)
T D8J834_HALJB/4 37 REILDTAEKRG-IITREDGLIRPRRGA-FVSFESEVVTKEGEFSCRRCGAGL 86 (114)
T ss_pred HHHHHHHHHcC-CceecCCeEEEecCc-ccccccceeeecceeeccCCCCCc
No 199
>2RLI_A SCO2 protein homolog, mitochondrial; Copper protein, thioredoxin fold, Metal transport, Structural Genomics, SPINE2-Complexes, Structural Proteomics in Europe, SPINE, Structural Proteomics; HET: CU1; NMR {Homo sapiens} SCOP: c.47.1.0, l.1.1.1
Probab=22.05 E-value=2.2e+02 Score=18.29 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCch-hHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPT-CQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~-C~~~M~~FA~ 93 (122)
++.|..+.+.. +.|+.+-+ -..+-|+. |...+..+.+
T Consensus 13 ~~~g~~~~~~~----~~gk~~vl~f~~~~c~~~c~~~~~~l~~ 51 (171)
T 2RLI_A 13 DHRGRARCKAD----FRGQWVLMYFGFTHCPDICPDELEKLVQ 51 (171)
T ss_dssp ETTSCEEETTT----TTTSEEEEEEECTTCSSSHHHHHHHHHH
T ss_pred eCCCCeeehHH----hCCCEEEEEEecCCCcccChHHHHHHHH
No 200
>1T3B_A Thiol:disulfide interchange protein dsbC; OXIDOREDUCTASE, PROTEIN DISULFIDE ISOMERASE, PROTEIN FOLDING, REDOX PROTEIN, REDOX-ACTIVE CENTER, ISOMERASE; 2.5A {Haemophilus influenzae} SCOP: d.17.3.1, c.47.1.9
Probab=22.04 E-value=3.9e+02 Score=19.70 Aligned_cols=58 Identities=7% Similarity=0.075 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHhhcccccccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHHHcC--CEEEE
Q FD01845416_041 39 AKLLEHLDTSTYSGKLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAKNKK--MNITY 101 (122)
Q Consensus 39 qklL~~le~~~~~~~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~~nk--m~ItY 101 (122)
.+.++.+.... -.++.+.++.+... +|+.+-+ -.-+=||.|...+..+..-.+ ..|.+
T Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~ 120 (211)
T 1T3B_A 60 VDVAGKILVDK-LNSYKDEMIVYPAK----NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRY 120 (211)
T ss_dssp CCTHHHHHHHH-HHTTGGGSEEECCT----TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEE
T ss_pred hHhHHHHHHHH-HHcCChhhcEecCC----CCceEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEE
No 201
>3U5S_A FAD-linked sulfhydryl oxidase ALR; Flavin, Liver, OXIDOREDUCTASE, selenium NMR, selenocysteine, selenoproteins, augmenter of liver regeneration; HET: FAD, MSE; 1.5A {Homo sapiens} SCOP: a.24.15.1, l.1.1.1
Probab=21.84 E-value=1.5e+02 Score=20.01 Aligned_cols=17 Identities=0% Similarity=0.039 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCchhHHHHHHHHHHcC
Q FD01845416_041 80 ACPTCQDGIADFAKNKK 96 (122)
Q Consensus 80 PC~~C~~~M~~FA~~nk 96 (122)
||+.|.....++.+.+.
T Consensus 62 pC~~c~~~~~~~~~~~~ 78 (126)
T 3U5S_A 62 PXEEXAEDLRKRLARNH 78 (126)
T ss_dssp SSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcC
No 202
>2YZH_B Probable thiol peroxidase; Redox protein, Antioxidant, Oxidoreductase, Peroxidase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses; HET: SO4; 1.85A {Aquifex aeolicus} SCOP: c.47.1.0, l.1.1.1
Probab=21.80 E-value=2.9e+02 Score=19.33 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC--CchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA--CPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP--C~~C~~~M~~FA~ 93 (122)
+..|..+.+.. +.|+.+-|.-.+. |+.|...+..+.+
T Consensus 34 ~~~g~~~~~~~----~~gk~~vl~f~~~~~c~~c~~~~~~l~~ 72 (171)
T 2YZH_B 34 TKDLQEKIVGG----AKDVVQVIITVPSLDTPVCETETKKFNE 72 (171)
T ss_dssp ETTSCEEEESS----CCSSEEEEEECSCTTSHHHHHHHHHHHH
T ss_pred cCCCCEEEccc----cCCceEEEEEcCCCCChhhHHHHHHHHH
No 203
>PF13905.10 ; Thioredoxin_8 ; Thioredoxin-like
Probab=21.77 E-value=2.3e+02 Score=16.54 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred CCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 70 NGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 70 g~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
|+.+-+ -..+.|+.|...+..+.+
T Consensus 1 gk~~~v~f~~~~c~~c~~~~~~l~~ 25 (97)
T NHLC2_CHICK/73 1 GKVVVLDFFTYCCINCLHLLPDLHE 25 (97)
T ss_pred CcEEEEEcccCCChhHHHHHHHHHH
No 204
>1XZO_A Hypothetical protein ypmQ; thioredoxin-like fold, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, METAL BINDING PROTEIN; HET: CA; 1.702A {Bacillus subtilis} SCOP: c.47.1.10
Probab=21.74 E-value=1.9e+02 Score=18.94 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCch-hHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPT-CQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~-C~~~M~~FA~ 93 (122)
++.|..+.+.. +.|+.+-+ -.-.-|+. |...+..+.+
T Consensus 20 ~~~g~~~~~~~----~~g~~~ll~f~~~~c~~~c~~~~~~l~~ 58 (174)
T 1XZO_A 20 NQDGKNVSLES----LKGEVWLADFIFTNCETICPPMTAHMTD 58 (174)
T ss_dssp CTTSCEEETGG----GTTCCEEEEEECSCCSSCCCSHHHHHHH
T ss_pred CCCCCEEEHHH----hCCcEEEEEEEecCCCCcChHHHHHHHH
No 205
>PF10865.12 ; DUF2703 ; Domain of unknown function (DUF2703)
Probab=21.55 E-value=2.8e+02 Score=19.90 Aligned_cols=31 Identities=16% Similarity=0.567 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred eeeccCCC----CCchhHH---H-------HHHHHHHcCCEEEEE
Q FD01845416_041 72 TKHLSEIP----ACPTCQD---G-------IADFAKNKKMNITYS 102 (122)
Q Consensus 72 ~~~~~glp----PC~~C~~---~-------M~~FA~~nkm~ItY~ 102 (122)
.|.+-..+ .|+.|.. . +...+.+.++.+.+.
T Consensus 2 ~Ie~~~~~~~~~~C~~c~~~~~~~~~~~~~l~~~l~~~gi~~~~~ 46 (116)
T Y1295_ARCFU/3- 2 TIKWLHLSVDGETCPRCSETGKELLKAVNTLKEFLSPLGFEVVFE 46 (116)
T ss_pred eEEEEEecCCCCCCcChhHHHHHHHHHHHHHHHHHHhcCCeEEEE
No 206
>3W4Y_C Mitochondrial FAD-linked sulfhydryl oxidase ERV1; alpha helix, disulfide bond, redox, Tim40/Mia40, mitochondria, OXIDOREDUCTASE; HET: FAD; 2.0A {Saccharomyces cerevisiae} SCOP: a.24.15.0, l.1.1.1
Probab=21.47 E-value=1.5e+02 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.615 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCchhHHHHHHHHHHc
Q FD01845416_041 80 ACPTCQDGIADFAKNK 95 (122)
Q Consensus 80 PC~~C~~~M~~FA~~n 95 (122)
||+.|..-..++.+++
T Consensus 60 pC~~C~~h~~~~~~~~ 75 (120)
T 3W4Y_C 60 PCNWCAKDFEKYIREN 75 (120)
T ss_dssp SSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHc
No 207
>6L08_A Cytidine deaminase 1; pyrimidine metabolism, RNA editing, catalytic mechanism, METAL BINDING PROTEIN; 2.999A {Arabidopsis thaliana}
Probab=21.40 E-value=1.2e+02 Score=25.47 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCCCchhHHHHHHHHHHcCCEEEEE
Q FD01845416_041 78 IPACPTCQDGIADFAKNKKMNITYS 102 (122)
Q Consensus 78 lpPC~~C~~~M~~FA~~nkm~ItY~ 102 (122)
.+||..|-+.|.+|+ -++.|.+.
T Consensus 275 ~~pcg~crq~l~e~~--~~~~v~~~ 297 (308)
T 6L08_A 275 VRQEHTARLLLETIS--PKCEFKVF 297 (308)
T ss_dssp CCCHHHHHHHHHHHC--SCCCCCBC
T ss_pred CCHHHHHHHHHHHHC--CCCEEEEE
No 208
>6DXN_B Thiol:disulfide interchange protein; Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, DsbA oxidoreductase, Oxidoreductases., OXIDOREDUCTASE; HET: MSE, PGE; 1.95A {Klebsiella pneumoniae} SCOP: c.47.1.0, l.1.1.1
Probab=21.29 E-value=3.6e+02 Score=18.47 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred eccccccCCeeeccCCCC-------------CchhHHHH------HHHHHHcCCEEEEEe
Q FD01845416_041 63 SLGQMMNNGTKHLSEIPA-------------CPTCQDGI------ADFAKNKKMNITYSW 103 (122)
Q Consensus 63 S~~~f~ng~~~~~~glpP-------------C~~C~~~M------~~FA~~nkm~ItY~~ 103 (122)
+...|..|+...+...++ ||.|...+ ..++++..-.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~d~~C~~c~~~~~~l~~~~~l~~~~~~~~~~~~ 61 (192)
T 6DXN_B 2 NAKDYQAGKNFTVIHSTVKQPPPLVEFFSFYCGPCYAFAERINVDTAIRKRLPDDMKLEK 61 (192)
T ss_dssp CCCCCCBTTTEEECCCCCSSCCSEEEEECTTCHHHHCCCCCSCHHHHHHHTSCTTCCCEE
T ss_pred ccccccCCCceEEcCCCCCCCCcEEEEEEeeCHHHHHHhcccchhHHHHHhCCCCcEEEE
No 209
>2LUS_A Thioredoxion; Cr-TRP16, OXIDOREDUCTASE; NMR {Carcinoscorpius rotundicauda}
Probab=21.21 E-value=1.4e+02 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred cCCeeeccCCCC-CchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPA-CPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpP-C~~C~~~M~~FA~ 93 (122)
+|+.+-+.-..+ |+.|...+..+.+
T Consensus 25 ~~~~~~i~f~~~~c~~c~~~~~~l~~ 50 (143)
T 2LUS_A 25 DKDIIGFYFSAHWCPPCRGFTPILAD 50 (143)
T ss_dssp CSSEEEEEECCTTSSCCTTSHHHHHH
T ss_pred CCCEEEEEEEcccChhhhchHHHHHH
No 210
>PF04194.17 ; PDCD2_C ; Programmed cell death protein 2, C-terminal putative domain
Probab=21.18 E-value=1.9e+02 Score=20.79 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHHHHHhhcc---cccc--cCCeEEEe----------eccccccCCeeeccCCCCCchhH
Q FD01845416_041 39 AKLLEHLDTSTY---SGKL--SGSTLEMH----------SLGQMMNNGTKHLSEIPACPTCQ 85 (122)
Q Consensus 39 qklL~~le~~~~---~~~L--~GstLeI~----------S~~~f~ng~~~~~~glpPC~~C~ 85 (122)
+|+.+.|...-+ +-.+ .| -|-+. + .+|+|+.|+
T Consensus 5 ~kF~~~i~~~P~QvlRY~~~~~g-pL~~~~~~~~~~~~~~-------------~~p~C~~Cg 52 (102)
T B4J8D2_DROGR/2 5 EHFKQLTAAHPEQVVRYRSGAGA-PLWIANVENTIASQLA-------------AVPNCSHCG 52 (102)
T ss_pred HHHHHHHHHCccceeEeEcCCCC-CeeeecCCcccccccc-------------CCCCCccCC
No 211
>PF17302.6 ; DUF5351 ; Family of unknown function (DUF5351)
Probab=21.16 E-value=76 Score=18.46 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred eeeccCCCCCchhH
Q FD01845416_041 72 TKHLSEIPACPTCQ 85 (122)
Q Consensus 72 ~~~~~glpPC~~C~ 85 (122)
.+.+....+||.|+
T Consensus 11 ~~~~~~~~~C~~C~ 24 (29)
T Q5KVQ0_GEOKA/1 11 QLLLGGSETCYSCQ 24 (29)
T ss_pred EEccCCceeCcCCC
No 212
>4BPY_A SCO PROTEIN; COPPER HOMEOSTASIS, CHAPERONE, HOMEOSTASIS; 1.4A {STREPTOMYCES LIVIDANS}
Probab=21.02 E-value=2e+02 Score=19.28 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCch-hHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPT-CQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~-C~~~M~~FA~ 93 (122)
+..|..+.+.. +..|+.+-+ -.-.-|+. |...+..+++
T Consensus 19 ~~~g~~~~l~~---~~~~~~~ll~f~~~~c~~~c~~~~~~l~~ 58 (175)
T 4BPY_A 19 DTQGKKYDLRE---QTAGKPTLIYFGYTHAPDVAPLTMNNIAV 58 (175)
T ss_dssp ETTSCEEEHHH---HTTTSCEEEEEECTTCSSHHHHHHHHHHH
T ss_pred cCCCCEEeHHH---hhCCCeEEEEEEecCCCCcCcHHHHHHHH
No 213
>4RQR_A Glutaredoxin-1; REDOX-ACTIVE CENTER, ELECTRON TRANSPORT; HET: COM; 1.08A {Homo sapiens} SCOP: c.47.1.1, l.1.1.1
Probab=20.95 E-value=1.9e+02 Score=16.57 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHH
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAK 93 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~ 93 (122)
+...+.+-..+-|+.|...+..|.+
T Consensus 14 ~~~~~~~f~~~~c~~~~~~~~~~~~ 38 (109)
T 4RQR_A 14 QPGKVVVFIKPTCPYCRRAQEILSQ 38 (109)
T ss_dssp CTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCHHHHHHHHHHHc
No 214
>1Z5Y_E Thiol:disulfide interchange protein dsbE; DSBD, N-TERMINAL DOMAIN, IMMUNOGLOBULIN-LIKE, CCMG, THIOREDOXIN-LIKE, DISULFIDE-LINKED, OXIDOREDUCTASE-BIOSYNTHETIC PROTEIN COMPLEX; HET: EDO; 1.94A {Escherichia coli} SCOP: c.47.1.10
Probab=20.94 E-value=3.9e+02 Score=17.34 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+.. +..++.+-+ -..+-|+.|...+..+.+
T Consensus 12 ~~~g~~~~~~~---~~~~~~~~l~f~~~~c~~c~~~~~~~~~ 50 (149)
T 1Z5Y_E 12 DNPGQFYQADV---LTQGKPVLLNVWATWCPTSRAEHQYLNQ 50 (149)
T ss_dssp SSTTCEECHHH---HHSSSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCCCCEEeeec---cccCCcEEEEEEccCChhHHHHHHHHHH
No 215
>PF08273.16 ; Prim_Zn_Ribbon ; Zinc-binding domain of primase-helicase
Probab=20.90 E-value=63 Score=18.29 Aligned_cols=6 Identities=50% Similarity=1.641 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCchhH
Q FD01845416_041 80 ACPTCQ 85 (122)
Q Consensus 80 PC~~C~ 85 (122)
|||.|+
T Consensus 5 ~CP~cg 10 (36)
T Q8ZQI0_SALTY/2 5 ECPVCG 10 (36)
T ss_pred cCCCCC
No 216
>4ML1_C DsbP; DsbC, DsbG, folding and assembly, bacterial conjugation, horizontal gene transfer, domain swapping, thioredoxin fold, bacterial periplasmic; 1.978A {Klebsiella pneumoniae}
Probab=20.85 E-value=2.8e+02 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred cCCeeeccCCCCCchhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 69 NNGTKHLSEIPACPTCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 69 ng~~~~~~glpPC~~C~~~M~~FA~~nkm~ItY~~ 103 (122)
...++.+-..+-||.|.+.+..+..-.+- +.+.+
T Consensus 94 ~~~~l~~f~d~~Cp~C~~~~~~l~~~~~~-~~~~~ 127 (217)
T 4ML1_C 94 GDKEVVVFVDPRCAVCHQLMGDAKSLVDD-YTFKF 127 (217)
T ss_dssp CSEEEEEEECTTBHHHHHHHHHHGGGTTT-EEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhhhcc-eEEEE
No 217
>3GMF_A Protein-disulfide isomerase; OXIDOREDUCTASE, DISULFIDE ISOMERASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR; 1.76A {Novosphingobium aromaticivorans}
Probab=20.67 E-value=2.7e+02 Score=19.90 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred eeeccCCCCCchhHHHH----HHHHHHc----CCEEEEE
Q FD01845416_041 72 TKHLSEIPACPTCQDGI----ADFAKNK----KMNITYS 102 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M----~~FA~~n----km~ItY~ 102 (122)
+|.+-..+-||.|.... ..+.++. ++.|.|.
T Consensus 18 ~v~~~~d~~Cp~C~~~~~~~~~~l~~~~~~~~~i~~~~~ 56 (205)
T 3GMF_A 18 RLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVR 56 (205)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHCCCCCTTTSEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHhhhHHHhcccCCCceEEEEE
No 218
>4DKK_A Double-stranded RNA-binding protein Staufen homolog 1; RBD, Beta Sheet, Swapping-motif, Dimerization, Protein binding, RNA BINDING PROTEIN; HET: FLC; 1.701A {Homo sapiens}
Probab=20.51 E-value=3.6e+02 Score=19.54 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCCCCc---hhHHHHHHHHHHcCCEEEEEe
Q FD01845416_041 77 EIPACP---TCQDGIADFAKNKKMNITYSW 103 (122)
Q Consensus 77 glpPC~---~C~~~M~~FA~~nkm~ItY~~ 103 (122)
+..||. .+-..+..+|+..++.|.|..
T Consensus 37 ~~~~~~~~~~~~~~L~~La~~~~f~v~y~d 66 (115)
T 4DKK_A 37 GHVPHGPLTRPSEQLDYLSRVQGFQVEYKD 66 (115)
T ss_dssp -----CCCCSHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHhCCeeEEEe
No 219
>2V1M_A GLUTATHIONE PEROXIDASE; SELENIUM, SELENOCYSTEINE, OXIDOREDUCTASE, LIPID PEROXIDASE, SCHISTOSOMA DETOXIFICATION PATHWAY; HET: SO4; 1.0A {SCHISTOSOMA MANSONI} SCOP: c.47.1.0
Probab=20.40 E-value=1.2e+02 Score=19.24 Aligned_cols=37 Identities=5% Similarity=0.195 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
+++|..+.+.. +.|+.+-+ -.-+-|+.|...+..+.+
T Consensus 18 ~~~g~~~~~~~----~~g~~~lv~f~~~~c~~c~~~~~~l~~ 55 (169)
T 2V1M_A 18 DINGVDVSLEK----YRGHVCLIVNVACKCGATDKNYRQLQE 55 (169)
T ss_dssp BTTSCEEEGGG----GTTSEEEEEEECSSSTTHHHHHHHHHH
T ss_pred eeCCcEEeHHH----hCCcEEEEEceeccCCCCcccHHHHHH
No 220
>2LRT_A Uncharacterized protein; STRUCTURAL GENOMICS, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology, OXIDOREDUCTASE; NMR {Bacteroides vulgatus}
Probab=20.39 E-value=2.4e+02 Score=18.71 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cccCCeEEEeeccccccCCeeec-cCCCCCchhHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHL-SEIPACPTCQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~-~glpPC~~C~~~M~~FA~ 93 (122)
++.|..+.+... .|+.+-+ --.+.|+.|...+..+.+
T Consensus 22 ~~~g~~~~~~~~----~~~~~ll~f~~~~c~~c~~~~~~l~~ 59 (152)
T 2LRT_A 22 DLKGNTRSLTDL----KGKVVLIDFTVYNNAMSAAHNLALRE 59 (152)
T ss_dssp BTTSCEECTTTG----GGSEEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCCCCEeeHHHh----CCcEEEEEEEcCCCccCHHHHHHHHH
No 221
>2RIQ_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, DNA damage, DNA repair, DNA-binding, Glycosyltransferase, Metal-binding, NAD, Nucleus; HET: GOL; 1.7A {Homo sapiens}
Probab=20.25 E-value=73 Score=24.93 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred eeccCCCCCchhH
Q FD01845416_041 73 KHLSEIPACPTCQ 85 (122)
Q Consensus 73 ~~~~glpPC~~C~ 85 (122)
+....++|||.|+
T Consensus 73 m~fG~l~~Cp~C~ 85 (160)
T 2RIQ_A 73 MVFGALLPCEECS 85 (160)
T ss_dssp HHHCEECCCTTTC
T ss_pred hhhcCCCCCccCC
No 222
>1TH5_A NifU1; IRON-SULFUR CLUSTER BINDING, STRUCTURAL GENOMICS, PROGRAM FOR RICE GENOME RESEARCH, unknown function; NMR {Oryza sativa} SCOP: l.1.1.1, d.52.8.1
Probab=20.22 E-value=3.9e+02 Score=17.01 Aligned_cols=55 Identities=7% Similarity=-0.017 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred cchHHHHHHHHHhhccccc-ccCCeEEEeeccccccCCeeeccCCCCCchhHHHHHHHHHH
Q FD01845416_041 35 GHSEAKLLEHLDTSTYSGK-LSGSTLEMHSLGQMMNNGTKHLSEIPACPTCQDGIADFAKN 94 (122)
Q Consensus 35 ~hsEqklL~~le~~~~~~~-L~GstLeI~S~~~f~ng~~~~~~glpPC~~C~~~M~~FA~~ 94 (122)
...++++-+.|+.....-. ..||.+++.+ +.++.+.+.-..+|.. ...+.+....
T Consensus 3 ~~~~~~i~~~l~~i~p~l~~~~gg~v~l~~----~~~~~v~v~l~g~c~~-~~~l~~~i~~ 58 (74)
T 1TH5_A 3 ELNEENVEKVLNEIRPYLAGTGGGGLQFLM----IKGPIVKVRLTGPAAV-VRTVRIAVSK 58 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCCCCCCCE----EETTEEEECCCSSSSS-SSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcccCCceEEEEE----EECCEEEEEEECCCCC-hHHHHHHHHH
No 223
>3IXR_A Bacterioferritin comigratory protein; Alpha Beta Protein, OXIDOREDUCTASE; 1.6A {Xylella fastidiosa} SCOP: c.47.1.0, l.1.1.1
Probab=20.19 E-value=2.2e+02 Score=19.70 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred cccCCeEEEeeccccccCCeeeccCCCC-Cch-hHHHHHHHHH
Q FD01845416_041 53 KLSGSTLEMHSLGQMMNNGTKHLSEIPA-CPT-CQDGIADFAK 93 (122)
Q Consensus 53 ~L~GstLeI~S~~~f~ng~~~~~~glpP-C~~-C~~~M~~FA~ 93 (122)
+++|..+.+.. ..|+.+-|.-..+ |+. |...+..+.+
T Consensus 38 ~~~g~~~~~~~----~~gk~~vl~f~~~~c~~~c~~~~~~l~~ 76 (179)
T 3IXR_A 38 LSGSTCKTLSD----YTNQWLVLYFYPKDNTPGSSTEGLEFNL 76 (179)
T ss_dssp EGGGEEECGGG----GTTSEEEEEECSCTTSHHHHHHHHHHHH
T ss_pred cCCCcEEEhHH----cCCCeEEEEEEcCCCCCCCHHHHHHHHH
No 224
>4P3Y_B Thiol:disulfide interchange protein; Thioredoxin related, Disulfide oxidase DsbA, Multidrug resistance, disulfide bond formation, Anti-biofilm formation, Antivirulence, bacterial infection, Translation-OXIDOREDUCTASE; HET: GOL, GDP; 2.154A {Escherichia coli BL21(DE3)} SCOP: c.47.1.0, l.1.1.1
Probab=20.19 E-value=2.4e+02 Score=20.26 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCchhHHHH---HHHHHHcCCEEEEEe
Q FD01845416_041 79 PACPTCQDGI---ADFAKNKKMNITYSW 103 (122)
Q Consensus 79 pPC~~C~~~M---~~FA~~nkm~ItY~~ 103 (122)
+-||.|...+ ..++++++-.|.+.+
T Consensus 31 ~~C~~C~~~~~~l~~l~~~~~~~v~~~~ 58 (182)
T 4P3Y_B 31 YGCPHCFKLEPHMQTWLKQIPSDVRFVR 58 (182)
T ss_dssp TTCHHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCcEEEE
No 225
>3L9V_E Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SrgA, thiol-disulfide oxidoreductase, Isomerase, OXIDOREDUCTASE; HET: P6G, MSE, PE8, P4C; 2.151A {Salmonella enterica subsp. enterica serovar Typhimurium} SCOP: c.47.1.0
Probab=20.15 E-value=2.4e+02 Score=19.40 Aligned_cols=32 Identities=9% Similarity=-0.105 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred eeeccCCCCCchhHHHH------HHHHHHcCCEEEEEe
Q FD01845416_041 72 TKHLSEIPACPTCQDGI------ADFAKNKKMNITYSW 103 (122)
Q Consensus 72 ~~~~~glpPC~~C~~~M------~~FA~~nkm~ItY~~ 103 (122)
++.+-.-+.||.|.... ..+.++..-.+.+.+
T Consensus 17 ~i~~~~d~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (189)
T 3L9V_E 17 AVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVK 54 (189)
T ss_dssp SEEEEECTTCHHHHCCCCCSCHHHHHHTTCCTTCCEEE
T ss_pred eEEEEecCCCHHHHHhhccccccHHHHHHccCCCEEEE
No 226
>1EU8_A TREHALOSE/MALTOSE BINDING PROTEIN; TREHALOSE-MALTOSE BINDING PROTEIN, PROTEIN-CARBOHYDRATE COMPLEX, MBP 2 FOLD, ABC TRANSPORTER FOLD, THERMOPHILIC PROTEIN, SUGAR BINDING PROTEIN; HET: GLC; 1.9A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=20.08 E-value=5.7e+02 Score=19.80 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred ccCCeEEEeeccccccCCeeeccCCCCC--chhHHHHHHHHHHc-CCEEEEEe
Q FD01845416_041 54 LSGSTLEMHSLGQMMNNGTKHLSEIPAC--PTCQDGIADFAKNK-KMNITYSW 103 (122)
Q Consensus 54 L~GstLeI~S~~~f~ng~~~~~~glpPC--~~C~~~M~~FA~~n-km~ItY~~ 103 (122)
|++++|.|.. ...+= ..-...+..|.+++ +++|++..
T Consensus 1 ~~~~~i~i~~-------------~~~~~~~~~~~~~~~~f~~~~p~i~v~~~~ 40 (409)
T 1EU8_A 1 IEEGKIVFAV-------------GGAPNEIEYWKGVIAEFEKKYPGVTVELKR 40 (409)
T ss_dssp CCSSEEEEEE-------------CCSHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CccceEEEEE-------------cCCCchHHHHHHHHHHHHHHCCCCEEEEee