Query FD01543233_04014 type IV secretion protein Rhs
Match_columns 115
No_of_seqs 100 out of 103
Neff 4.76345
Searched_HMMs 86581
Date Tue Feb 27 19:23:20 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6906268.hhr -oa3m ../results/6906268.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09143.14 ; AvrPphF-ORF-2 ; A 31.7 1.9E+02 0.0021 23.6 4.4 40 54-93 125-165 (176)
2 1S21_A ORF2; PREDOMINANTLY BET 31.3 2E+02 0.0023 24.0 4.7 57 35-93 137-194 (206)
3 7LDF_A Minimal thioredoxin fol 28.8 3.1E+02 0.0036 19.3 4.5 35 64-104 18-59 (71)
4 1IYC_A scarabaecin; antifungal 22.2 1.3E+02 0.0015 18.6 1.6 16 1-16 4-19 (36)
No 1
>PF09143.14 ; AvrPphF-ORF-2 ; AvrPphF-ORF-2
Probab=31.69 E-value=1.9e+02 Score=23.65 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CCCceEEEeHHHHHHcCCEEEeCCCcCCCCCCC-cccceEE
Q FD01543233_040 54 PNGQVGVATVGEIEKAGGTITLDGKLNSPNGRM-IMNHATV 93 (115)
Q Consensus 54 p~~qigvTTvG~IR~aGg~Vv~~P~~~~~~~~~-np~Hatv 93 (115)
++.-.-..++||++++||+|-+|-+.....+.. ++.=+||
T Consensus 125 ~~~v~V~~~LgD~L~~GGkVY~D~Sa~~~~~~~~~alIVTL 165 (176)
T Q88A90_PSESM/2 125 DNQVSVKMRLGDFLERGGKVYADASSVADDGETSQALIVTL 165 (176)
T ss_pred CCeEEEEEEhHHHHHcCCEEEccccccCCCCCCceEEEEEe
No 2
>1S21_A ORF2; PREDOMINANTLY BETA-STRAND, CHAPERONE; 2.0A {Pseudomonas syringae pv. phaseolicola} SCOP: d.166.1.4
Probab=31.35 E-value=2e+02 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred eEEEEeCCCCCHHHHccCCCCCceEEEeHHHHHHcCCEEEeCCCcCCCCCCC-cccceEE
Q FD01543233_040 35 GISTQAKPGATIDVLAKPIPNGQVGVATVGEIEKAGGTITLDGKLNSPNGRM-IMNHATV 93 (115)
Q Consensus 35 GvSv~sa~g~sv~eLa~~ip~~qigvTTvG~IR~aGg~Vv~~P~~~~~~~~~-np~Hatv 93 (115)
.|.+-...-......+. ++.-.-..++||++++||+|-+|-+.....+.. ++.=+||
T Consensus 137 NVm~g~~a~~~~~~Y~~--~~~v~V~~~LgD~l~~GGkVY~D~sa~~~~~~~~~alIVTL 194 (206)
T 1S21_A 137 NVMAGQGALSALRGYAG--SDHVTTEMRLGDFLDQGGKVYSDTSAMSAGGDSVEALIVTL 194 (206)
T ss_dssp EEEESTTTTTC----------CEEEEEEHHHHHTTTCCEEEBC-----CCSSCEEEEEEC
T ss_pred EEEEcchhHHHHhhcCC--CCeEEEEEEHHHHHHcCCEEEeecccccCCCCCcceEEEEc
No 3
>7LDF_A Minimal thioredoxin fold protein, ems_thioM_802; de novo designed, DE NOVO PROTEIN; NMR {synthetic construct}
Probab=28.83 E-value=3.1e+02 Score=19.29 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHcCCEEEeCCCcCCCCCCCcccceEEec-------CCHHHHHHH
Q FD01543233_040 64 GEIEKAGGTITLDGKLNSPNGRMIMNHATVDG-------LTAQQAQDL 104 (115)
Q Consensus 64 G~IR~aGg~Vv~~P~~~~~~~~~np~Hatv~~-------~t~~~~~~l 104 (115)
.||.++|++|..--. +.|...+|++. ..|+|+-+.
T Consensus 18 reikkagwkvevhkh------psntsqvtvtkgnkqwtfkdpkqavef 59 (71)
T 7LDF_A 18 REIKKAGWKVEVHKH------PSNTSQVTVTKGNKQWTFKDPKQAVEF 59 (71)
T ss_dssp HHHHHHTCCEEEECC------SSCCEEEEEEETTEEEEESSHHHHHHH
T ss_pred HHHHHcCcEEEEEeC------CCCcceeEEecCCeEeeeCCHHHHHHH
No 4
>1IYC_A scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, ANTIFUNGAL PROTEIN; NMR {N/A} SCOP: g.31.1.2
Probab=22.17 E-value=1.3e+02 Score=18.59 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CCCcccEEEcCCCCCh
Q FD01543233_040 1 ILADTDIVCRAGTCNA 16 (115)
Q Consensus 1 ~lpD~a~VvRGG~~~p 16 (115)
+||||.+.+|.-.+-|
T Consensus 4 klpddkvlirsrsncp 19 (36)
T 1IYC_A 4 KLPDDKVLIRSRSNCP 19 (36)
T ss_dssp CCCSSSCCCTTTSCCC
T ss_pred CCCCCcEEEEccccCC