Query FD01846512_03854 DUF4329 domain-containing protein
Match_columns 92
No_of_seqs 77 out of 79
Neff 4.11691
Searched_HMMs 86581
Date Tue Feb 27 19:24:49 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/3195451.hhr -oa3m ../results/3195451.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15529.10 ; Ntox24 ; Bacteria 60.2 25 0.00029 23.8 3.1 32 27-61 44-75 (80)
2 2MN3_A Defensin-BvL; defensin- 49.2 27 0.00031 22.1 1.8 20 16-35 7-26 (44)
3 PF17858.5 ; Defensin_int ; Pla 49.2 27 0.00031 22.1 1.8 20 16-35 7-26 (44)
4 4Z42_H Urease subunit beta; hy 41.6 17 0.0002 28.1 0.1 10 49-58 71-80 (164)
5 6YL3_3 Urease subunit beta; Ur 36.7 27 0.00032 26.2 0.5 10 49-58 41-50 (132)
6 4EP8_B Urease subunit beta; al 36.4 25 0.00029 25.1 0.3 10 49-58 37-46 (101)
7 PF00699.24 ; Urease_beta ; Ure 35.5 25 0.00029 24.9 0.2 10 49-58 35-44 (98)
8 8HC1_Q Urease subunit alpha; U 32.7 32 0.00037 28.2 0.4 10 49-58 142-151 (238)
9 PF04233.18 ; Phage_Mu_F ; Phag 29.1 33 0.00039 20.3 -0.1 32 11-44 70-101 (107)
10 5OL4_B Urease subunit beta; Ur 27.5 31 0.00036 25.6 -0.5 10 49-58 39-48 (122)
11 PF21094.1 ; Nup188_SH3-like ; 27.1 79 0.00092 20.5 1.4 12 25-36 48-59 (64)
12 3QGA_M Fusion of urease beta a 26.3 41 0.00047 27.3 -0.0 10 49-58 142-151 (225)
13 4GY7_A Urease; Plant urease, J 24.1 62 0.00071 29.7 0.7 10 49-58 168-177 (840)
No 1
>PF15529.10 ; Ntox24 ; Bacterial toxin 24
Probab=60.24 E-value=25 Score=23.75 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred cCCceeEEecCCCCCCCCCCCCCcceeeEEcccCC
Q FD01846512_038 27 PRGTIGYRHDLVPPGKPHHPYTGDHYNLYKANQNP 61 (92)
Q Consensus 27 P~GTi~yr~D~vpp~~~h~g~~G~H~h~~~~nQnP 61 (92)
..|-+-.|+|.. .++|.++ -+|++-|..+++|
T Consensus 44 ~~G~~vkrvd~~--G~~H~gv-tPhv~e~~~n~~p 75 (80)
T R5AU67_9CLOT/3 44 ADSQPVVRIDFM--GRPHAGV-LPHIHVYGYNESG 75 (80)
T ss_pred CCCCceEEEeCC--CCcccCc-CCceeecccccCC
No 2
>2MN3_A Defensin-BvL; defensin-like peptide, platypus defensin, beta-defensin, intermediate-DLP, ANTIMICROBIAL PROTEIN; NMR {N/A}
Probab=49.22 E-value=27 Score=22.12 Aligned_cols=20 Identities=40% Similarity=0.903 Sum_probs=0.0 Template_Neff=1.300
Q ss_pred CCCCCcCCceecCCceeEEe
Q FD01846512_038 16 PPCKTISGNIVPRGTIGYRH 35 (92)
Q Consensus 16 pPC~p~~g~ivP~GTi~yr~ 35 (92)
|||..|.|.--|.||.+.|+
T Consensus 7 ppcedvngqcqp~~~~~~rl 26 (44)
T 2MN3_A 7 PPCEDVNGQCQPRGNPCLRL 26 (44)
T ss_dssp CHHHHTTCEEECSSSSSEEE
T ss_pred CCcccCCCccCCCCCcceEE
No 3
>PF17858.5 ; Defensin_int ; Platypus intermediate defensin-like peptide
Probab=49.22 E-value=27 Score=22.12 Aligned_cols=20 Identities=40% Similarity=0.903 Sum_probs=0.0 Template_Neff=1.300
Q ss_pred CCCCCcCCceecCCceeEEe
Q FD01846512_038 16 PPCKTISGNIVPRGTIGYRH 35 (92)
Q Consensus 16 pPC~p~~g~ivP~GTi~yr~ 35 (92)
|||..|.|.--|.||.+.|+
T Consensus 7 ppcedvngqcqp~~~~~~rl 26 (44)
T DEFBL_ORNAN/25 7 PPCEDVNGQCQPRGNPCLRL 26 (44)
T ss_pred CCcccCCCccCCCCCcceEE
No 4
>4Z42_H Urease subunit beta; hydrolase, urease, urea degradation, nitrogen metabolism; 3.01A {Yersinia enterocolitica W22703} SCOP: b.85.3.0
Probab=41.60 E-value=17 Score=28.07 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|++|
T Consensus 71 gSH~hf~e~N 80 (164)
T 4Z42_H 71 GSHFHFFEVN 80 (164)
T ss_dssp ETTCCGGGSC
T ss_pred cCcccchhcc
No 5
>6YL3_3 Urease subunit beta; Urease, enzyme, nickel, metalloenzyme, pathogen, METAL BINDING PROTEIN; HET: KCX, NI; 1.98A {Yersinia enterocolitica W22703}
Probab=36.65 E-value=27 Score=26.21 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|++|
T Consensus 41 gSH~hf~E~N 50 (132)
T 6YL3_3 41 GSHFHFFEVN 50 (132)
T ss_dssp ETTSCGGGSC
T ss_pred cccccceeec
No 6
>4EP8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiation damage; HET: KCX; 1.55A {Enterobacter aerogenes} SCOP: b.85.3.1
Probab=36.39 E-value=25 Score=25.05 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|+|+|++|
T Consensus 37 gSH~hf~e~N 46 (101)
T 4EP8_B 37 GSHYHFAEVN 46 (101)
T ss_dssp ETTSCGGGSC
T ss_pred eccccccccC
No 7
>PF00699.24 ; Urease_beta ; Urease beta subunit
Probab=35.50 E-value=25 Score=24.94 Aligned_cols=10 Identities=30% Similarity=1.065 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|++|
T Consensus 35 gSH~hf~e~N 44 (98)
T V5XGZ9_MYCNE/1 35 GSHFHFFECN 44 (98)
T ss_pred eeeecccccc
No 8
>8HC1_Q Urease subunit alpha; Urease, activation complex, UreA, UreB, UreC, UreF, UreD, UreH, Helicobacter pylori, HYDROLASE; 2.3A {Helicobacter pylori 26695}
Probab=32.69 E-value=32 Score=28.20 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|.+|
T Consensus 142 gSH~hf~e~N 151 (238)
T 8HC1_Q 142 GSHFHFFEVN 151 (238)
T ss_dssp ETTSCGGGSC
T ss_pred CCcccccccc
No 9
>PF04233.18 ; Phage_Mu_F ; Phage Mu protein F like protein
Probab=29.08 E-value=33 Score=20.35 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCCCCCCCCCcCCceecCCceeEEecCCCCCCCC
Q FD01846512_038 11 EKKPCPPCKTISGNIVPRGTIGYRHDLVPPGKPH 44 (92)
Q Consensus 11 ~~~~CpPC~p~~g~ivP~GTi~yr~D~vpp~~~h 44 (92)
+...|+-|....|++++.+...+. ..||.+++
T Consensus 70 ~~~~~~~c~~~~g~~~~~~~~~~~--~~p~~h~~ 101 (107)
T Q9RZ57_DEIRA/1 70 DRRVRPEHAKRDGKRFSWDDPPPD--GHPGEPIN 101 (107)
T ss_pred CCccCHHHHHHCCeEEeCCCCCCC--CCCCCCCC
No 10
>5OL4_B Urease subunit beta; Urease Nickel NBPT enzyme, HYDROLASE; HET: CXM, KCX, SO4, EDO; 1.28A {Sporosarcina pasteurii} SCOP: b.85.3.1
Probab=27.48 E-value=31 Score=25.57 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|++|
T Consensus 39 gSH~hf~e~N 48 (122)
T 5OL4_B 39 GSHIHFVEVN 48 (122)
T ss_dssp ETTSCGGGSC
T ss_pred eeccchhhcc
No 11
>PF21094.1 ; Nup188_SH3-like ; Nup188 SH3-like domain
Probab=27.10 E-value=79 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred eecCCceeEEec
Q FD01846512_038 25 IVPRGTIGYRHD 36 (92)
Q Consensus 25 ivP~GTi~yr~D 36 (92)
+||+||+|..++
T Consensus 48 ~IPaGT~G~iv~ 59 (64)
T A0A094B2H4_9PE 48 CIPAGTQGRIVS 59 (64)
T ss_pred EECCCCeeEEcc
No 12
>3QGA_M Fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, urease, HYDROLASE; HET: KCX, FME, FE; 3.0A {Helicobacter mustelae}
Probab=26.29 E-value=41 Score=27.31 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|.+|
T Consensus 142 gSH~hf~e~N 151 (225)
T 3QGA_M 142 GSHFHFFEAN 151 (225)
T ss_dssp ETTSCGGGSC
T ss_pred ccccchhhcc
No 13
>4GY7_A Urease; Plant urease, Jack bean, Canavalia ensiformis, Hydrolase, Metal-binding, Nickel; HET: ACN, KCX, PO4, CME, EDO; 1.492A {Canavalia ensiformis}
Probab=24.14 E-value=62 Score=29.65 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CcceeeEEcc
Q FD01846512_038 49 GDHYNLYKAN 58 (92)
Q Consensus 49 G~H~h~~~~n 58 (92)
|+|||+|++|
T Consensus 168 ~sh~~~~~~n 177 (840)
T 4GY7_A 168 GSHYHFIEVN 177 (840)
T ss_dssp ETTSCGGGSC
T ss_pred ccccceeecc