Query FD01845355_02472 hypothetical protein
Match_columns 126
No_of_seqs 113 out of 208
Neff 4.92903
Searched_HMMs 86581
Date Tue Feb 27 19:05:25 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4477669.hhr -oa3m ../results/4477669.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 5ZNM_B Colicin-D; Colicin, bac 82.5 0.0097 1.1E-07 51.0 -11.2 89 19-117 295-384 (387)
2 PF11390.12 ; FdsD ; NADH-depen 61.3 27 0.00031 23.6 3.4 32 28-63 18-49 (59)
3 PF18365.5 ; PI_PP_C ; Phosphoi 60.2 18 0.00021 28.1 2.8 28 27-58 40-67 (123)
4 5GVC_A DNA topoisomerase 3-bet 46.3 1.4E+02 0.0016 27.4 6.4 65 20-84 534-601 (615)
5 PF21384.1 ; Cas3_I-F_Cas2 ; CR 45.4 31 0.00036 25.1 1.9 15 26-40 37-51 (79)
6 PF04220.16 ; YihI ; Der GTPase 45.0 1.2E+02 0.0013 24.9 5.2 42 46-87 95-137 (158)
7 7UAW_A ABC transporter ATPase; 41.8 2.2E+02 0.0026 22.2 6.1 46 31-90 73-122 (125)
8 6KTQ_A Homocitrate synthase; H 41.8 1.8E+02 0.002 25.2 6.1 67 6-78 334-403 (412)
9 3A9I_A Homocitrate synthase; h 40.7 2.4E+02 0.0027 24.1 6.6 64 6-76 305-373 (376)
10 PF19723.3 ; DUF6216 ; Family o 40.5 1.1E+02 0.0013 25.2 4.6 76 49-126 30-106 (263)
11 PF20008.3 ; DUF6429 ; Domain o 36.5 92 0.0011 17.5 2.7 21 21-41 27-47 (48)
12 1N0W_B Breast cancer type 2 su 35.0 1.2E+02 0.0014 18.0 3.0 31 13-43 5-35 (35)
13 6TG9_H NAD-dependent formate d 34.5 81 0.00094 22.1 2.5 32 28-63 22-53 (71)
14 8TFG_A DNA topoisomerase 1; Ec 32.3 1.5E+02 0.0017 27.8 4.5 58 15-72 532-592 (688)
15 2I76_A Hypothetical protein; N 31.9 53 0.00061 26.2 1.5 47 26-72 218-268 (276)
16 2GAI_A DNA topoisomerase I; To 31.1 3E+02 0.0035 25.6 6.2 70 15-84 476-548 (633)
17 3IVS_B Homocitrate synthase, m 29.8 5.1E+02 0.0058 22.6 7.0 65 6-77 339-408 (423)
18 1R7J_A Conserved hypothetical 28.9 1.9E+02 0.0022 19.3 3.5 42 21-62 54-95 (95)
19 PF10802.12 ; DUF2540 ; Protein 28.0 75 0.00087 23.1 1.5 17 63-79 7-23 (75)
20 6OZW_A DNA topoisomerase 1; to 25.5 4.7E+02 0.0054 24.2 6.3 70 15-84 522-594 (595)
21 6K8N_B topoisomerase III; DNA 25.4 5.6E+02 0.0065 24.2 6.9 70 15-84 509-581 (668)
22 PF07643.15 ; DUF1598 ; Protein 24.0 3.2E+02 0.0037 19.9 4.1 42 23-65 2-46 (84)
23 2EFV_A Hypothetical protein MJ 22.9 1.1E+02 0.0013 23.1 1.7 16 63-78 20-35 (92)
24 5LGM_A Fusion protein 5.5/5.7; 22.6 1.4E+02 0.0016 21.2 2.0 17 21-37 49-65 (69)
25 5X14_A Transcriptional regulat 22.1 5.2E+02 0.006 19.2 5.2 54 24-79 76-129 (188)
26 3SHG_B VbhA; AMPylation, adeny 21.9 3.2E+02 0.0037 17.2 3.5 39 36-74 18-56 (61)
27 4CND_B TRNA (CYTIDINE/URIDINE- 21.4 7.7E+02 0.0089 20.9 7.1 54 27-81 195-254 (267)
28 PF18127.5 ; NAMPT_N ; Nicotina 20.7 3.6E+02 0.0042 19.5 3.9 40 26-65 66-106 (107)
29 7QV8_D DNA_repair_protein_BRCA 20.6 3.3E+02 0.0038 16.9 3.1 29 11-39 3-31 (35)
30 1I7D_A DNA TOPOISOMERASE III; 20.5 4.4E+02 0.0051 24.8 5.3 59 15-73 539-597 (659)
31 6PCM_B DNA topoisomerase 1; To 20.2 3.5E+02 0.0041 26.3 4.7 59 15-73 546-607 (842)
32 7DCO_o HLJ1_G0053790.mRNA.1.CD 20.2 4.4E+02 0.005 20.2 4.4 34 25-62 205-238 (238)
No 1
>5ZNM_B Colicin-D; Colicin, bacteriocin, tRNAse, membrane translocation., ANTIBIOTIC; HET: GOL, SO4; 1.85A {Escherichia coli}
Probab=82.47 E-value=0.0097 Score=51.01 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cCCCCeeeCHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchH
Q FD01845355_024 19 LTTEGVNITHEGIAIVEKHISRFDPDPGN-EFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCNLGWETGRPSDNQE 97 (126)
Q Consensus 19 L~~~~~~iT~~Gi~~V~~Hl~rF~~~~~N-~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~lG~~~~~~~~~~~ 97 (126)
++|+...+...|+..++.+..+|...+.+ ..|+++.+.+..+....+..+..||.|++++....+..|--..
T Consensus 295 l~~k~~~~~~~gi~~~~~~~~~~~~~~~~i~~~l~~~e~~~~g~~~~~~~~~v~~~~e~~~~~~~~~~g~~~~------- 367 (387)
T 5ZNM_B 295 LDKKYKHAGDFGISDTKKNRETLTKFRDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLS------- 367 (387)
T ss_dssp HHHTGGGGGGGTCCCCSCSHHHHHHHHHHHHHHHHCTTCEECCBCTTSTTCEEEECTTTCEEEEECTTSCEEE-------
T ss_pred ccccccccCCcCCCccccchhhHHHHHHHHHHHhhCccceecceeeecCCeeEEeCCcccceEEEcCCCceee-------
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q FD01845355_024 98 AYDLWNNTHTSTLEDYRITG 117 (126)
Q Consensus 98 ~~~~wn~AH~aaLedy~v~~ 117 (126)
.|+..|...+++|.+.+
T Consensus 368 ---~w~~~~~~~~~~~~i~~ 384 (387)
T 5ZNM_B 368 ---GWKINPDADNGRIYLET 384 (387)
T ss_dssp ---EEECCTTSHHHHHHHHH
T ss_pred ---eeecCCCCCccceeccc
No 2
>PF11390.12 ; FdsD ; NADH-dependant formate dehydrogenase delta subunit FdsD
Probab=61.35 E-value=27 Score=23.56 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC
Q FD01845355_024 28 HEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGELL 63 (126)
Q Consensus 28 ~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~ 63 (126)
++.++.|..||.+| +...|.++|...++.+..
T Consensus 18 ~~a~~~va~Hi~~F----W~P~Mr~~l~~~~~~~~~ 49 (59)
T G8AQF4_9PROT/7 18 DEAVTETAGHIRAF----WEPRMRQRLLEHSSAGGE 49 (59)
T ss_pred HHHHHHHHHHHHHH----CCHHHHHHHHHHHHhcCC
No 3
>PF18365.5 ; PI_PP_C ; Phosphoinositide phosphatase C-terminal domain
Probab=60.23 E-value=18 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred CHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q FD01845355_024 27 THEGIAIVEKHISRFDPDPGNEFMVSRLKKIA 58 (126)
Q Consensus 27 T~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~ 58 (126)
+|.||+.++.++.+-... -++.||.+|+
T Consensus 40 ~P~GI~~Ik~lm~~~~~~----~~~~rLa~I~ 67 (123)
T A0A098FZK5_9GA 40 ASTGIEQIKEVMQDKQAG----SSVERVEKIF 67 (123)
T ss_pred CCchHHHHHHHhhCCCCC----cHHHHHHHHH
No 4
>5GVC_A DNA topoisomerase 3-beta-1; Topoisomerase, ISOMERASE; 2.436A {Homo sapiens}
Probab=46.26 E-value=1.4e+02 Score=27.35 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCCeeeCHHHHHHHH---HHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHh
Q FD01845355_024 20 TTEGVNITHEGIAIVE---KHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCN 84 (126)
Q Consensus 20 ~~~~~~iT~~Gi~~V~---~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~ 84 (126)
.++.+.+|+.|...++ .....+....-...|-++|.+|..|+....+.-..++..--.++..+..
T Consensus 534 ~~~~~~~T~~G~~~~~~l~~~~~~~~~~~~t~~~e~~l~~I~~g~~~~~~~~~~~~~~~~~~~~~~~~ 601 (615)
T 5GVC_A 534 SGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVD 601 (615)
T ss_dssp TTTEEEECHHHHHHHHHHHHHCGGGTSTHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeeCHHHHHHHHHHHHcCHHHcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
No 5
>PF21384.1 ; Cas3_I-F_Cas2 ; CRISPR-associated nuclease/helicase Cas3, I-F/YPEST, Cas2 domain
Probab=45.43 E-value=31 Score=25.13 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred eCHHHHHHHHHHHHh
Q FD01845355_024 26 ITHEGIAIVEKHISR 40 (126)
Q Consensus 26 iT~~Gi~~V~~Hl~r 40 (126)
||++|++.|+..|.+
T Consensus 37 iT~eGL~~l~~~Lrk 51 (79)
T H8GLE3_METAL/1 37 ITQDGLDAVRKLLRK 51 (79)
T ss_pred hhHHHHHHHHHHHHH
No 6
>PF04220.16 ; YihI ; Der GTPase activator (YihI)
Probab=45.04 E-value=1.2e+02 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH-HHHHhcCC
Q FD01845355_024 46 GNEFMVSRLKKIANGELLPEQVDLNYYTHECREY-QRYCNLGW 87 (126)
Q Consensus 46 ~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~-~r~~~lG~ 87 (126)
.|+.-++.|-.-+..+..+|..|..|+-.-|.-. ++|..|||
T Consensus 95 EnD~rL~~LLd~ld~ge~Ls~~eq~yvd~~l~R~~~L~e~LGi 137 (158)
T W0HYW0_9GAMM/1 95 ENDDRLDGLLQRLEQDETLSTEERRYVDQALDRIDELMTELGI 137 (158)
T ss_pred HcCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCC
No 7
>7UAW_A ABC transporter ATPase; Anti-Thoeris, Immune Evasion, signal sequestration, VIRAL PROTEIN; HET: MF6; 1.72A {Clostridium botulinum}
Probab=41.82 E-value=2.2e+02 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred HHHHHHHHHhcC----CChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q FD01845355_024 31 IAIVEKHISRFD----PDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCNLGWETG 90 (126)
Q Consensus 31 i~~V~~Hl~rF~----~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~lG~~~~ 90 (126)
|.+|...|.-|. +...|...|.-|+.++ +..|-|-..|..+ |++..
T Consensus 73 L~i~idRL~~~q~g~fpc~eN~~Al~~L~~Al-------------~~l~~Rt~~R~~r-gVeGt 122 (125)
T 7UAW_A 73 LEIVRDRLKSFQAGPFSSRENACALTHVEEAL-------------MWMNRRVEDRIER-NVLGT 122 (125)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHT-TCTTS
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHh-hcCCc
No 8
>6KTQ_A Homocitrate synthase; Homocitrate synthase, Sulfolobus acidocaldarius, complex, BIOSYNTHETIC PROTEIN, LYASE; HET: COA, 1PE, AKG, SO4; 1.98A {Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)}
Probab=41.80 E-value=1.8e+02 Score=25.24 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCHHhCCCcccccCCCCeeeCHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q FD01845355_024 6 PFDPDKAGGPVEHLTTEGVNITHEGIAIVEKHISRFD---PDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECRE 78 (126)
Q Consensus 6 ~f~p~~aGg~i~~L~~~~~~iT~~Gi~~V~~Hl~rF~---~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE 78 (126)
+|+|+.-|. ..+-+.=...|...|+..|.+++ ....-+.+++++++ ...+..+|+.+..-..+++..
T Consensus 334 ~~~p~~~G~-----~~~~~~~~~sg~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~ 403 (412)
T 6KTQ_A 334 FLPPETFGR-----SRDYVIDKYTGKHAVKDRFDRLGVKLTDSEIDQVLAKIKS-NPNVRFYRDVDLLELAESVTG 403 (412)
T ss_dssp SSCGGGGTC-----CCEECCSTTCCHHHHHHHHHHHTCCCCHHHHHHHHHHHHT-CTTCCCCCHHHHHHHHHHHHC
T ss_pred cCCHHHcCC-----CCcccccccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-CCcCCCCCHHHHHHHHHHHhc
No 9
>3A9I_A Homocitrate synthase; homocitrate synthase, Lysine complex, Amino-acid biosynthesis, Lysine biosynthesis, TRANSFERASE-TRANSFERASE INHIBITOR complex; HET: LYS; 1.8A {Thermus thermophilus}
Probab=40.73 E-value=2.4e+02 Score=24.13 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCHHhCCCcccccCCCCeeeC--HHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q FD01845355_024 6 PFDPDKAGGPVEHLTTEGVNIT--HEGIAIVEKHISRFD---PDPGNEFMVSRLKKIANGELLPEQVDLNYYTHEC 76 (126)
Q Consensus 6 ~f~p~~aGg~i~~L~~~~~~iT--~~Gi~~V~~Hl~rF~---~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHEl 76 (126)
+|+|..-|. .+.+.|. ..|...|+.-|.+.+ ....-+.+++++++....+ .+|+.+..-..+++
T Consensus 305 ~~~p~~vG~------~~~~~~~~~~sg~~~v~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~l~~~~ 373 (376)
T 3A9I_A 305 PYPPEVFGV------KRKLIIASRLTGRHAIKARAEELGLHYGEEELHRVTQHIKALADRG-QLTLEELDRILREW 373 (376)
T ss_dssp SSCGGGGTC------C----------------------CCCCCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred CCCHHHhCC------ceeEEEeccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
No 10
>PF19723.3 ; DUF6216 ; Family of unknown function (DUF6216)
Probab=40.47 E-value=1.1e+02 Score=25.20 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q FD01845355_024 49 FMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCNL-GWETGRPSDNQEAYDLWNNTHTSTLEDYRITGNDLYHPDAP 126 (126)
Q Consensus 49 ~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~l-G~~~~~~~~~~~~~~~wn~AH~aaLedy~v~~~~lYhPevI 126 (126)
.+.+||=..+.|+.+.++...+=+..|.++++++|-+ |+ .-...........|-..|.-.+.+.+.. ...+.++-+
T Consensus 30 ~l~~Rlw~l~~g~~~~~d~~l~~~~~~~~dl~~Fr~~~gi-~~~s~~~~~~l~~w~~~~~i~~~~i~~~-~~~fd~~~~ 106 (263)
T D2UFC6_XANAP/6 30 PVNARLLRFFISKDEIEDPDIRQNLADQAALVSFRMTHGV-RSRTIIDAKRLALFSKEKNLPLDLIGKA-GWVFDLKKL 106 (263)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhceeccCC-CCCCHHHHHHHHHHHHHcCCCHHHhccc-cceeecccC
No 11
>PF20008.3 ; DUF6429 ; Domain of unknown function (DUF6429)
Probab=36.52 E-value=92 Score=17.47 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCeeeCHHHHHHHHHHHHhc
Q FD01845355_024 21 TEGVNITHEGIAIVEKHISRF 41 (126)
Q Consensus 21 ~~~~~iT~~Gi~~V~~Hl~rF 41 (126)
.+.+.+|++|.+.++.....+
T Consensus 27 ~~~~~lt~~G~~~~~~~~~~~ 47 (48)
T A0A1G6YVZ6_9PR 27 AKSVAFTPEGRKRAEELFDAL 47 (48)
T ss_pred CceEEECHHHHHHHHHHHHHh
No 12
>1N0W_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RecA-like ATPase, protein complex, GENE REGULATION-ANTITUMOR PROTEIN COMPLEX; HET: MSE, EDO; 1.7A {Homo sapiens} SCOP: j.97.1.1
Probab=35.02 E-value=1.2e+02 Score=18.03 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CCcccccCCCCeeeCHHHHHHHHHHHHhcCC
Q FD01845355_024 13 GGPVEHLTTEGVNITHEGIAIVEKHISRFDP 43 (126)
Q Consensus 13 Gg~i~~L~~~~~~iT~~Gi~~V~~Hl~rF~~ 43 (126)
..++..-+++.|.|+++-+...+..+..++.
T Consensus 5 ~~gF~TA~gk~v~vs~~al~kak~~f~e~d~ 35 (35)
T 1N0W_B 5 LLGFHTASGKKVKIAKESLDKVKNLFDEKEQ 35 (35)
T ss_dssp GGSCEETTSCBCCCCHHHHHHTTTTTCCCCC
T ss_pred cCCcccCCCCCCccCHHHHHHHHHHhhhhcC
No 13
>6TG9_H NAD-dependent formate dehydrogenase subunit delta; molybdoenzyme, formate oxidation, NAD+-dependent, OXIDOREDUCTASE; HET: FES, FMN, SF4, NAI, MGD; 3.24A {Rhodobacter capsulatus}
Probab=34.46 E-value=81 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC
Q FD01845355_024 28 HEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGELL 63 (126)
Q Consensus 28 ~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~ 63 (126)
++.+..|..||.+| +...|.++|...+..+..
T Consensus 22 ~~a~~~vA~Hi~~F----W~P~MR~~l~~~~~~~~~ 53 (71)
T 6TG9_H 22 GDRAGPVAAHISEN----WSAPMRAALLAHVAAQSP 53 (71)
T ss_dssp SCSSHHHHHHHHHH----CCHHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHh----CCHHHHHHHHHHHHHcCC
No 14
>8TFG_A DNA topoisomerase 1; EcTopo1, topoisomerase type I, ISOMERASE; HET: EDO, ACT; 1.88A {Mycobacterium tuberculosis}
Probab=32.31 E-value=1.5e+02 Score=27.76 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred cccccCCCCeeeCHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHH
Q FD01845355_024 15 PVEHLTTEGVNITHEG---IAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYY 72 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~G---i~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FY 72 (126)
+......+.+..|+.| ++.++.|...+-...-...|-+.|.+|..|+....+.-..||
T Consensus 532 ~yi~~~~~~l~~T~~G~~l~~~l~~~~~~l~~~~~ta~~E~~L~~I~~g~~~~~~~~~~~~ 592 (688)
T 8TFG_A 532 GYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFY 592 (688)
T ss_dssp TSEEEETTEEEECHHHHHHHHHHHHHCGGGGCHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CcEEecCCcccCChhHHHHHHHHHHHhHhhcCHHHHHHHHHHHHHHHhCCCcHHHHHHHcc
No 15
>2I76_A Hypothetical protein; NADP, dehydrogenase, TM1727, T1650, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for; HET: NDP, MSE; 3.0A {Thermotoga maritima} SCOP: c.2.1.6, a.100.1.10
Probab=31.86 E-value=53 Score=26.21 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred eCHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHcCCCCCCHHHHHHH
Q FD01845355_024 26 ITHEGIAIVEKHISRFDP----DPGNEFMVSRLKKIANGELLPEQVDLNYY 72 (126)
Q Consensus 26 iT~~Gi~~V~~Hl~rF~~----~~~N~~MI~RL~~i~~g~~~~T~~D~~FY 72 (126)
+....++.++.|+..+.. ....+.+.+++.++...+...+..+.+||
T Consensus 218 ~~~~d~~~i~~~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (276)
T 2I76_A 218 VKRGDWQVVEEERREYEKIFGNTVLYDEIVKLLREVAESERREAQEDEREG 268 (276)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHC---------
T ss_pred chhcCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCccchhhcccC
No 16
>2GAI_A DNA topoisomerase I; Topoisomerase, Zinc ribbon, ISOMERASE; 1.7A {Thermotoga maritima}
Probab=31.14 E-value=3e+02 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred cccccCCCCeeeCHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHh
Q FD01845355_024 15 PVEHLTTEGVNITHEG---IAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCN 84 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~G---i~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~ 84 (126)
+......+.+.+|+.| ++.+..|...+....--..|-++|.+|..|+....+.-..|+..--......+.
T Consensus 476 gyi~~~~~~l~~T~~G~~l~~~l~~~~~~l~~~~~ta~~E~~l~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 548 (633)
T 2GAI_A 476 GYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDR 548 (633)
T ss_dssp TSEEEETTEEEEBHHHHHHHHHHHHHSTTTTSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTCC
T ss_pred CceeecCCccCCCchHHHHHHHHHHhchhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhHh
No 17
>3IVS_B Homocitrate synthase, mitochondrial; TIM barrel, Metalloprotein, Transferase, Claisen condensation, Amino-acid biosynthesis, Lysine biosynthesis, Mitochondrion, Transit peptide; HET: MSE; 2.24A {Schizosaccharomyces pombe}
Probab=29.77 E-value=5.1e+02 Score=22.63 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCHHhCCCcccccCCCCeeeC--HHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q FD01845355_024 6 PFDPDKAGGPVEHLTTEGVNIT--HEGIAIVEKHISRFD---PDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECR 77 (126)
Q Consensus 6 ~f~p~~aGg~i~~L~~~~~~iT--~~Gi~~V~~Hl~rF~---~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElr 77 (126)
+|+|+.-|. .+.+.|. ..|...|+.-|.+++ .++.=..+++++++... +..+|+.+..=...++.
T Consensus 339 ~~~p~~~G~------~~~~~~~~~~sg~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~l~~~~~ 408 (423)
T 3IVS_B 339 ILKPEDFGM------SRYVHVGSRLTGWNAIKSRAEQLNLHLTDAQAKELTVRIKKLAD-VRTLAMDDVDRVLREYH 408 (423)
T ss_dssp SSCGGGGTC------CCCEEESSCCCTHHHHHHHHHHTTCCC---CCHHHHHHHHTCCC-------THHHHHHTTCC
T ss_pred ecCHHHcCC------ceeEEecCccchHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
No 18
>1R7J_A Conserved hypothetical protein Sso10a; Winged helix-turn-helix, two-stranded antiparallel coiled coil, Structural Genomics, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49
Probab=28.93 E-value=1.9e+02 Score=19.27 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCeeeCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC
Q FD01845355_024 21 TEGVNITHEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGEL 62 (126)
Q Consensus 21 ~~~~~iT~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~ 62 (126)
+..+.+|++|...+..+...+.....-+.-.+-|.+.+...+
T Consensus 54 ~~~~~lt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (95)
T 1R7J_A 54 GKQYMLTKKGEELLEDIRKFNEMRKNMDQLKEKINSVLSIRQ 95 (95)
T ss_dssp TTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCeEEECHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhccccC
No 19
>PF10802.12 ; DUF2540 ; Protein of unknown function (DUF2540)
Probab=28.04 E-value=75 Score=23.15 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred CCCHHHHHHHHHHHHHH
Q FD01845355_024 63 LPEQVDLNYYTHECREY 79 (126)
Q Consensus 63 ~~T~~D~~FYtHElrE~ 79 (126)
.++.-+.|||.|.|.+.
T Consensus 7 ~id~r~lRY~LHklen~ 23 (75)
T Q6LZ85_METMP/6 7 NVDRRTARYILHKVEDM 23 (75)
T ss_pred ccCHHHHHHHHHHHhcC
No 20
>6OZW_A DNA topoisomerase 1; topoisomerase, supercoiled, DNA BINDING PROTEIN, ISOMERASE; HET: FMT; 2.063A {Streptococcus mutans serotype c (strain ATCC 700610 / UA159)} SCOP: e.10.1.0
Probab=25.48 E-value=4.7e+02 Score=24.21 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred cccccCCCCeeeCHHHH---HHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHh
Q FD01845355_024 15 PVEHLTTEGVNITHEGI---AIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCN 84 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~Gi---~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~ 84 (126)
+......+.+.+|+.|. +.++.+...+....--..|-+.|.++..|.....+.-..|+..-......++.
T Consensus 522 ~yi~~~~~~l~~T~~G~~l~~~l~~~~~~l~~~~~t~~~e~~l~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 594 (595)
T 6OZW_A 522 YYVRLVSKRFEPTELGEIVNSLIIEFFPDIVDVKFTAEMESKLDEVEIGKEEWQKVIDQFYKPFEKEVIKAEE 594 (595)
T ss_dssp TSEEEETTEEEECHHHHHHHHHHHHHCGGGGCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccEeecCCccCcCHHHHHHHHHHHHHChhhCCHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHh
No 21
>6K8N_B topoisomerase III; DNA BINDING Protein, Topoisomerase III, type IA topoisomerase, ISOMERASE; 2.1A {Saccharolobus solfataricus}
Probab=25.39 E-value=5.6e+02 Score=24.22 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred cccccCCCCeeeCHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHh
Q FD01845355_024 15 PVEHLTTEGVNITHEG---IAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQRYCN 84 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~G---i~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r~~~ 84 (126)
+......+.+..|+.| ++.+..+...+-...--..|-+.|.+|..|+....+.-..++.-=-..++.++.
T Consensus 509 ~yi~~~~~~l~~T~~G~~l~~~l~~~~~~l~~~~~ta~~E~~L~~I~~G~~~~~~~l~~~~~~~~~~~~~~~~ 581 (668)
T 6K8N_B 509 KYLTNNGRYIIPTKLGFYIAEILNKFFPDIVDVRMTADMESKLEMIKTGKVLESKVIKENIEKLNKFIEEYKV 581 (668)
T ss_dssp TSEEEETTEEEECHHHHHHHHHHHHHCGGGGCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEecCCeecccHHHHHHHHHHHHHCcccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
No 22
>PF07643.15 ; DUF1598 ; Protein of unknown function (DUF1598)
Probab=24.05 E-value=3.2e+02 Score=19.87 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CeeeCHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHcCCCCCC
Q FD01845355_024 23 GVNITHEGIAIVEKHISRFDP---DPGNEFMVSRLKKIANGELLPE 65 (126)
Q Consensus 23 ~~~iT~~Gi~~V~~Hl~rF~~---~~~N~~MI~RL~~i~~g~~~~T 65 (126)
+|.-|++|+..+.+.+++... ...+..-++.|+++ -|.+.++
T Consensus 2 SIDP~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~Q~V~ 46 (84)
T Q7UV79_RHOBA/2 2 SIDPTPEGLQRMQQFLVQVGGRAGRGDTQQLVRGLKQN-LGLQTVT 46 (84)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH-hCCCeeE
No 23
>2EFV_A Hypothetical protein MJ0366; Hypothetical Protein, Methanocaldococcus jannaschii DSM 2661, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional; 1.9A {Methanocaldococcus jannaschii DSM 2661} SCOP: a.43.1.12
Probab=22.87 E-value=1.1e+02 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred CCCHHHHHHHHHHHHH
Q FD01845355_024 63 LPEQVDLNYYTHECRE 78 (126)
Q Consensus 63 ~~T~~D~~FYtHElrE 78 (126)
.++.-+.|||.|.|.+
T Consensus 20 ~iD~r~lRY~LHkLen 35 (92)
T 2EFV_A 20 NIDGRKLRYLLHKLEN 35 (92)
T ss_dssp CCCHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHcc
No 24
>5LGM_A Fusion protein 5.5/5.7; Transcription effector, anti-sigma effector, transcription; NMR {Enterobacteria phage T7}
Probab=22.61 E-value=1.4e+02 Score=21.25 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred CCCeeeCHHHHHHHHHH
Q FD01845355_024 21 TEGVNITHEGIAIVEKH 37 (126)
Q Consensus 21 ~~~~~iT~~Gi~~V~~H 37 (126)
.+.-.||++|+..++.|
T Consensus 49 ~~~W~iT~~Gl~~L~~~ 65 (69)
T 5LGM_A 49 GGAWEITASGTRFLKRM 65 (69)
T ss_dssp SSCEECCTTHHHHHHHT
T ss_pred cCeEEECHHHHHHHHHc
No 25
>5X14_A Transcriptional regulator; Transcription factor, TRANSCRIPTION; HET: FER; 1.68A {Bacillus subtilis subsp. spizizenii strain W23} SCOP: a.4.5.0, l.1.1.1
Probab=22.14 E-value=5.2e+02 Score=19.22 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eeeCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q FD01845355_024 24 VNITHEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREY 79 (126)
Q Consensus 24 ~~iT~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~ 79 (126)
..||++|...++..+..+....... ...+.-.+.--..++..+..-+...+.+.
T Consensus 76 y~iT~~G~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 129 (188)
T 5X14_A 76 YTLTDSGKQELHDWLIRHQPIPETV--KDEFMLKAYFISSLSRQEASDLFTDQLLK 129 (188)
T ss_dssp EEECHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHcCCCCCccc--ccHHHHHHHhhhcCCHHHHHHHHHHHHHH
No 26
>3SHG_B VbhA; AMPylation, adenylylation, toxin-antitoxin complex, Fic fold, AMP transfer, TRANSFERASE-PROTEIN BINDING complex; HET: TLA; 1.5A {Bartonella schoenbuchensis R1}
Probab=21.93 E-value=3.2e+02 Score=17.15 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q FD01845355_024 36 KHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTH 74 (126)
Q Consensus 36 ~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtH 74 (126)
....+++...+...++..|++.++|++...+.-..+..+
T Consensus 18 ~as~~leG~~~s~~~~~~~~~~i~Geit~~e~~~~~~~~ 56 (61)
T 3SHG_B 18 LASQRLEGLEPDPQVVAQMERVVVGELETSDVIKDLMER 56 (61)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
No 27
>4CND_B TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ; TRANSFERASE, SPOUT; 1.5A {ESCHERICHIA COLI}
Probab=21.40 E-value=7.7e+02 Score=20.88 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q FD01845355_024 27 THEGIAIVEKHISR------FDPDPGNEFMVSRLKKIANGELLPEQVDLNYYTHECREYQR 81 (126)
Q Consensus 27 T~~Gi~~V~~Hl~r------F~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYtHElrE~~r 81 (126)
|.+-++.+..|+.+ |........|+.+|++++ +...+|..|.++...=++.+.+
T Consensus 195 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~-~R~~~t~~E~~~l~g~~~~~~~ 254 (267)
T 4CND_B 195 LVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLF-TRARPESQELNILRGILASIEQ 254 (267)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
No 28
>PF18127.5 ; NAMPT_N ; Nicotinamide phosphoribosyltransferase, N-terminal domain
Probab=20.74 E-value=3.6e+02 Score=19.53 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred eCHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHcCCCCCC
Q FD01845355_024 26 ITHEGIAIVEKHISR-FDPDPGNEFMVSRLKKIANGELLPE 65 (126)
Q Consensus 26 iT~~Gi~~V~~Hl~r-F~~~~~N~~MI~RL~~i~~g~~~~T 65 (126)
||++-++..+.-++. |+....|..+.+++.+...|-+|+.
T Consensus 66 ~t~~~i~~~~~~~~~~~g~~~~~~~~~~~i~~~h~GyLPl~ 106 (107)
T A0A151NPB3_ALL 66 VTKEKIQEAKEVYREHFQDDVFNEKGWNYILEKYDGHLPIE 106 (107)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCcCCee
No 29
>7QV8_D DNA_repair_protein_BRCA2_-_putative; BRC repeat, homologous recombination, Rad51, recombinase. BRCA2, RECOMBINATION; HET: ADP; 2.15A {Leishmania infantum}
Probab=20.60 E-value=3.3e+02 Score=16.87 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred hCCCcccccCCCCeeeCHHHHHHHHHHHH
Q FD01845355_024 11 KAGGPVEHLTTEGVNITHEGIAIVEKHIS 39 (126)
Q Consensus 11 ~aGg~i~~L~~~~~~iT~~Gi~~V~~Hl~ 39 (126)
.....+..-+++.|.|+++-+.+-+++++
T Consensus 3 ~~~~gFsTAsGK~V~VS~~al~KAk~lf~ 31 (35)
T 7QV8_D 3 LVPTLFSTASGKPVTVRRESLQKVAERLG 31 (35)
T ss_dssp EEEEEEEETTSCEEEEEHHHHC-------
T ss_pred CCCCccccCCCCCCeeCHHHHHHHHHHHH
No 30
>1I7D_A DNA TOPOISOMERASE III; DNA topoisomerase, decatenating enzyme, protein-DNA complex, single-stranded DNA, ISOMERASE-DNA COMPLEX; 2.05A {Escherichia coli} SCOP: e.10.1.1
Probab=20.50 E-value=4.4e+02 Score=24.76 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred cccccCCCCeeeCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q FD01845355_024 15 PVEHLTTEGVNITHEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYT 73 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYt 73 (126)
+.....++.+.+|+.|...++.-=..+....--..|-+.|.+|..|+....+.-..++.
T Consensus 539 ~yi~~~~~~l~~T~~G~~l~~~l~~~l~~~~~t~~~E~~l~~i~~g~~~~~~~~~~~~~ 597 (659)
T 1I7D_A 539 GFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVG 597 (659)
T ss_dssp TSEEESSSEEEECHHHHHHHHHSCHHHHSTHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCeeccCCEEeecHHHHHHHHhCchhcCChhHHHHHHHHHHHHHcCCccHHHhHHHHHH
No 31
>6PCM_B DNA topoisomerase 1; Topoisomerase I, ss DNA binding, N-terminal domain, C-terminal Domain, ISOMERASE-DNA complex; HET: SO4; 3.107A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
Probab=20.25 E-value=3.5e+02 Score=26.30 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred cccccCCCCeeeCHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q FD01845355_024 15 PVEHLTTEGVNITHEG---IAIVEKHISRFDPDPGNEFMVSRLKKIANGELLPEQVDLNYYT 73 (126)
Q Consensus 15 ~i~~L~~~~~~iT~~G---i~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~~~T~~D~~FYt 73 (126)
+......+.+..|+.| ++.+..|+..+....--..|-+.|.+|..|+....+.-..||.
T Consensus 546 ~yi~~~~~~l~~T~~G~~l~~~l~~~~~~l~~~~~ta~~E~~L~~I~~G~~~~~~~l~~~~~ 607 (842)
T 6PCM_B 546 GYVQKKGSALVPSWVAFAVVGLLEQHFGRLVDYDFTAAMEDELDEIANGQEQRTNWLNNFYF 607 (842)
T ss_dssp TSEEEETTEEEECHHHHHHHHHHHHHSHHHHCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred CcEEEeCCeeeccHHHHHHHHHHHHhHHhhcCHHHHHHHHHHHHHHHcCcccHHHHHHHhhh
No 32
>7DCO_o HLJ1_G0053790.mRNA.1.CDS.1; RNA splicing, spliceosome, Bact complex, Prp2, Spp2, ATPase/helicase, activation, SPLICING; HET: ZN, IHP, GTP; 2.5A {Saccharomyces cerevisiae}
Probab=20.20 E-value=4.4e+02 Score=20.23 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred eeCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC
Q FD01845355_024 25 NITHEGIAIVEKHISRFDPDPGNEFMVSRLKKIANGEL 62 (126)
Q Consensus 25 ~iT~~Gi~~V~~Hl~rF~~~~~N~~MI~RL~~i~~g~~ 62 (126)
..|++.+..+++.|..... -.=|+||+++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 238 (238)
T 7DCO_o 205 KMTVERRNELKKQLAEATS----LEEIARLEKLLSGGV 238 (238)
T ss_dssp --------------------------------------
T ss_pred cCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhCCC