Query FD01845383_00299 hypothetical protein
Match_columns 147
No_of_seqs 104 out of 135
Neff 5.50051
Searched_HMMs 86581
Date Tue Feb 27 19:02:32 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2715413.hhr -oa3m ../results/2715413.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4LH9_A Heterocyst differentiat 54.3 33 0.00038 22.3 2.7 20 128-147 11-30 (40)
2 PF14974.10 ; P_C10 ; Protein C 47.8 23 0.00027 25.3 1.6 47 20-66 11-65 (103)
3 8WOJ_A RxLR121 effector; RxLR, 41.1 2.2E+02 0.0026 21.1 5.6 54 12-70 9-66 (76)
4 PF02520.21 ; ANIS5_cation-bd ; 41.0 1.1E+02 0.0013 22.1 4.3 29 114-142 2-31 (109)
5 PF19460.3 ; DUF5997 ; Family o 37.9 1.3E+02 0.0014 23.8 4.2 55 2-69 15-69 (108)
6 PF07862.15 ; Nif11 ; Nif11 dom 37.1 1.5E+02 0.0017 17.9 3.9 26 117-142 18-43 (51)
7 PF18631.5 ; Cucumopine_C ; Cuc 35.9 1.8E+02 0.0021 22.8 4.9 33 109-141 96-128 (139)
8 4P0Z_A AM32; GRAM-POSITIVE, CO 34.1 1.8E+02 0.002 24.0 4.7 50 17-70 37-110 (149)
9 PF08671.14 ; SinI ; Anti-repre 33.8 1.1E+02 0.0013 16.4 2.6 23 51-73 6-28 (28)
10 3D0W_A YflH protein; yflH, Gra 33.4 1.6E+02 0.0019 22.9 4.2 59 14-88 14-73 (104)
11 7BQB_A NF6; de novo designed p 33.2 3.1E+02 0.0035 21.2 5.4 47 17-69 21-80 (106)
12 6DMP_B Designed orthogonal pro 32.4 1.8E+02 0.0021 21.4 4.0 28 114-141 26-53 (82)
13 3L9K_Z Dynein intermediate cha 31.6 1.4E+02 0.0016 18.5 3.0 24 17-40 1-24 (38)
14 PF09278.15 ; MerR-DNA-bind ; M 31.2 1.1E+02 0.0013 18.1 2.6 20 51-70 4-23 (65)
15 2HEO_A Z-DNA binding protein 1 29.4 2.3E+02 0.0026 17.9 3.9 38 28-70 8-45 (67)
16 1ZAR_A Rio2 kinase; serine kin 28.5 2.6E+02 0.003 23.2 4.9 47 11-70 4-50 (282)
17 PF21124.1 ; VinK_C ; VinK acyl 28.4 1.2E+02 0.0014 21.3 2.5 32 14-45 2-57 (62)
18 6E4J_A Uncharacterized protein 27.3 2.3E+02 0.0027 21.0 3.9 26 116-141 31-60 (80)
19 2MAR_A SXP/RAL-2 family protei 27.1 1.9E+02 0.0022 21.6 3.7 27 116-142 19-47 (134)
20 3L9Q_A DNA primase large subun 26.4 3.2E+02 0.0037 22.8 5.1 55 16-70 1-57 (195)
21 PF17840.5 ; Tugs ; Tethering U 26.1 1.1E+02 0.0013 19.5 2.0 17 9-25 27-43 (47)
22 1OJL_E TRANSCRIPTIONAL REGULAT 25.8 3.3E+02 0.0038 21.3 4.8 47 17-70 240-301 (304)
23 PF18945.4 ; VipB_2 ; EvpB/VC_A 25.3 2.6E+02 0.003 21.0 4.1 34 110-143 18-54 (112)
24 7OGR_B PHIKZ068; RNA polymeras 25.2 2.5E+02 0.0029 27.4 4.8 69 10-82 47-117 (521)
25 2LNB_A Z-DNA-binding protein 1 24.6 2.6E+02 0.003 19.3 3.7 36 30-70 19-54 (80)
26 PF18460.5 ; HetR_C ; Heterocys 24.3 1.6E+02 0.0019 22.0 2.7 20 128-147 48-67 (79)
27 PF18579.5 ; Raf1_HTH ; Rubisco 24.2 1.2E+02 0.0014 21.3 2.0 40 30-71 1-40 (61)
28 PF21450.1 ; RIF2_lid ; RIF2, A 24.0 2.6E+02 0.003 20.9 3.6 26 112-137 56-81 (85)
29 PF03849.18 ; Tfb2 ; Transcript 23.8 1.3E+02 0.0014 26.2 2.4 28 12-39 1-28 (354)
30 6SRS_Q Fanconi anaemia protein 23.5 3.4E+02 0.004 18.5 4.1 32 114-145 60-91 (91)
31 4YNL_M Heterocyst differentiat 23.5 1.7E+02 0.002 22.4 2.7 20 128-147 57-76 (90)
32 PF13040.10 ; Fur_reg_FbpB ; Fu 23.5 1.7E+02 0.0019 18.8 2.3 26 14-39 8-33 (39)
33 PF19754.3 ; DUF6241 ; Family o 22.9 2.6E+02 0.003 20.6 3.6 25 116-140 26-52 (90)
34 3L0O_B Transcription terminati 22.5 2.8E+02 0.0033 25.1 4.4 32 111-142 396-427 (427)
35 7BZH_A Sul7s; Archaea, Crenarc 22.4 3.2E+02 0.0037 18.0 3.6 35 30-70 3-37 (59)
36 PF12244.12 ; DUF3606 ; Protein 21.8 1.1E+02 0.0012 19.7 1.3 19 57-75 25-43 (53)
37 6G1T_A AM32; Repressor, Protei 21.8 5.6E+02 0.0065 19.8 5.3 49 17-70 10-83 (122)
38 4MDB_A Mariner Mos1 transposas 21.6 3.7E+02 0.0043 18.5 4.0 36 10-47 190-225 (225)
39 PF20184.2 ; DUF6547 ; Family o 20.9 1.2E+02 0.0014 23.0 1.6 34 10-51 41-74 (117)
40 PF10078.13 ; DUF2316 ; Unchara 20.5 4.7E+02 0.0054 19.6 4.5 41 16-69 2-42 (89)
41 4PS6_A Inhibitor of vertebrate 20.3 1.7E+02 0.002 22.4 2.3 27 22-49 8-34 (130)
No 1
>4LH9_A Heterocyst differentiation control protein; single helix, loop packing around, heterocyst development, heterocyst patterning, TRANSCRIPTION; 2.049A {Nostoc}
Probab=54.30 E-value=33 Score=22.34 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q FD01845383_002 128 KAEANAKIESFISKYVRNAA 147 (147)
Q Consensus 128 ~~e~~~~l~~~a~~~l~~g~ 147 (147)
++|+=+.|+.||++|=..|.
T Consensus 11 ~~ELDe~ir~WADkYH~~gg 30 (40)
T 4LH9_A 11 MQELDEIIRTWADKYHQVGG 30 (40)
T ss_dssp HHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHHhhccCC
No 2
>PF14974.10 ; P_C10 ; Protein C10
Probab=47.82 E-value=23 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHhChhHHHHHHHHhcCCCc--------cCCeeehhhHHHHHHcCCCHHH
Q FD01845383_002 20 QDVENAMADSGVREGVKDALRGNGG--------MHEWFPVAQADKAKDLGYTYDE 66 (147)
Q Consensus 20 ~e~~~l~~~~~~k~~I~~~LR~~GG--------~HEWl~Vs~a~k~K~wG~sa~e 66 (147)
+++...+..|+++.++....+..++ ..+-+.-.+.+.++++||+.+.
T Consensus 11 ~~ll~~~~~~~fq~~l~~l~~~~~~d~~~~~~~~~~l~~~vq~~vl~ryGf~~~~ 65 (103)
T A0A7M7G6Y3_NAS 11 SDVLTALEAPENVQKLNAAKENSGNEMLKTMQFVFPTVMQIQMEVIKKYGFPDGR 65 (103)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
No 3
>8WOJ_A RxLR121 effector; RxLR, effector, Phytophthora capsici, IMMUNOSUPPRESSANT; HET: MSE; 1.768A {Phytophthora capsici LT1534}
Probab=41.05 E-value=2.2e+02 Score=21.08 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred HHHHcC---CHHHHHHHHhChhHHHHHHHHhcCCCccCCeeehhhHHH-HHHcCCCHHHHHHh
Q FD01845383_002 12 EWFDSA---TVQDVENAMADSGVREGVKDALRGNGGMHEWFPVAQADK-AKDLGYTYDELMKL 70 (147)
Q Consensus 12 ~WFd~l---s~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl~Vs~a~k-~K~wG~sa~ei~~~ 70 (147)
.++|++ -|+++..+-..|+.++.|-..=| --|-.|..|.. .|.-|++...|..+
T Consensus 9 ~~ld~l~~~lpeQF~RM~tqPe~lr~If~SWk-----~G~~s~ddAv~fMk~qGls~~aI~~f 66 (76)
T 8WOJ_A 9 SLWDDLFNSLPEQFQRMRKEPWYLRRIFRSWR-----SGMGTSDEAVAYMRSQGLSQKAIDQF 66 (76)
T ss_dssp CHHHHHHSCCCHHHHHHHHCHHHHHHHHHHHH-----HTTCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHhcHHHHHHHHhCHHHHHHHHHHHH-----cCCccHHHHHHHHHHCCCCHHHHHHH
No 4
>PF02520.21 ; ANIS5_cation-bd ; SXP/RAL-2 family protein Ani s 5-like, metal-binding domain
Probab=41.03 E-value=1.1e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Q FD01845383_002 114 AHRLLSRTLAQ-ATSKAEANAKIESFISKY 142 (147)
Q Consensus 114 ~HneL~~~i~~-s~s~~e~~~~l~~~a~~~ 142 (147)
+-.++.+++.+ +-|+.|....|..|+.++
T Consensus 2 a~~ef~~I~~n~~lt~~e~~~~i~~wa~~~ 31 (109)
T G0P6U8_CAEBE/4 2 AQEAYMLILTNSTQTMPEFEENTRLWGEKY 31 (109)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
No 5
>PF19460.3 ; DUF5997 ; Family of unknown function (DUF5997)
Probab=37.91 E-value=1.3e+02 Score=23.83 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred CCCcCCcCHHHHHHcCCHHHHHHHHhChhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHH
Q FD01845383_002 2 PWNQKGIGFGEWFDSATVQDVENAMADSGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMK 69 (147)
Q Consensus 2 P~~~~g~~F~~WFd~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~ 69 (147)
|-... +|++ ..+|-+||.+|-.|| -.--.-||..| |-++...+.+||||.+-+.+
T Consensus 15 pAtP~--eFq~--~~vtr~el~~L~~~P---PeWL~~LR~~g------phpR~vVA~kLgIsi~gL~R 69 (108)
T A0A2T0VJV7_9MI 15 PAAPE--EFQN--GSVTRAELNELLTNP---PKWIEKLRATG------PHPRQIVASKLGVSASGLAR 69 (108)
T ss_pred CCCCH--HHhc--CCCCHHHHHHHHHCC---cHHHHHHHHhC------CCCHHHHHHHhCCCHHHHHh
No 6
>PF07862.15 ; Nif11 ; Nif11 domain
Probab=37.13 E-value=1.5e+02 Score=17.89 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
Q FD01845383_002 117 LLSRTLAQATSKAEANAKIESFISKY 142 (147)
Q Consensus 117 eL~~~i~~s~s~~e~~~~l~~~a~~~ 142 (147)
+|.+.+..+.+.+++...+..++..+
T Consensus 18 ~l~~~l~~~~~~~~~~~~~~~~a~~~ 43 (51)
T B2JAK5_NOSP7/1 18 QLQELLGATENTDSFNELAVRLGQDN 43 (51)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
No 7
>PF18631.5 ; Cucumopine_C ; Cucumopine synthase C-terminal helical bundle domain
Probab=35.95 E-value=1.8e+02 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q FD01845383_002 109 RATSNAHRLLSRTLAQATSKAEANAKIESFISK 141 (147)
Q Consensus 109 ~gS~~~HneL~~~i~~s~s~~e~~~~l~~~a~~ 141 (147)
+....+..++.+.|+...|++||.+-+..+...
T Consensus 96 ~~~~~~~~~~~~~l~~~~t~ee~~~ll~a~~~Y 128 (139)
T E4NJY1_KITSK/1 96 HDLHALVHRTHRVLPALRTKEEFRSVTAALALY 128 (139)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
No 8
>4P0Z_A AM32; GRAM-POSITIVE, CONJUGATION, HELIX-TURN-HELIX, DSDNA BINDING, DNA BINDING PROTEIN; HET: MSE; 1.35A {Enterococcus faecalis}
Probab=34.12 E-value=1.8e+02 Score=23.98 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred CCHHHHHHHHhChhHHHHHHH-------------HhcCCCc-----------cCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 17 ATVQDVENAMADSGVREGVKD-------------ALRGNGG-----------MHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 17 ls~~e~~~l~~~~~~k~~I~~-------------~LR~~GG-----------~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
+|++|+.+++..+ ++.|+. ..|.-|| +-+|+.+.+| ++.||++...|.++
T Consensus 37 ~t~~e~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~ilT~~EA--Ae~lGvs~~TIr~l 110 (149)
T 4P0Z_A 37 YTAKEMSERIGKN--RNYLSQAYRNNKHEILKNFNYRKIGGTIIFSDNPNNDLSQLITAKEA--SQLLGKNDEYFAHI 110 (149)
T ss_dssp EEHHHHHHHTTSC--TTHHHHHHHTTCHHHHTTSEEEEETTEEEEESCTTCCGGGEEEHHHH--HHHTTCCTTHHHHH
T ss_pred ccHHHHHHHHCCC--HHHHHHHHHhCccHHHHhccceeeCCeecccCCCCCchhccccHHHH--HHHHCCCHHHHHHH
No 9
>PF08671.14 ; SinI ; Anti-repressor SinI
Probab=33.75 E-value=1.1e+02 Score=16.41 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred hhhHHHHHHcCCCHHHHHHhccc
Q FD01845383_002 51 VAQADKAKDLGYTYDELMKLSSS 73 (147)
Q Consensus 51 Vs~a~k~K~wG~sa~ei~~~~t~ 73 (147)
+.-...+++.|++-++|+++...
T Consensus 6 i~~i~~~~~~g~~~~~i~~~~~~ 28 (28)
T A0A6L7H7A6_BAC 6 TQLVKDAMNSGVSKEQFREFLEF 28 (28)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhC
No 10
>3D0W_A YflH protein; yflH, Gram-positive bacterium, Bacillus subtilis, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG; HET: MSE; 2.0A {Bacillus subtilis}
Probab=33.38 E-value=1.6e+02 Score=22.86 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHcCCHHHHHHHHhC-hhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHhccchhhceeecCCCCCCC
Q FD01845383_002 14 FDSATVQDVENAMAD-SGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKLSSSRNDVWFENVPDPRNP 88 (147)
Q Consensus 14 Fd~ls~~e~~~l~~~-~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~~t~T~~v~F~n~~~~~~~ 88 (147)
.+.+++++...++.+ ...++.+.+++. ..+..|+|-+.|.+.+....+ ...+..+|.|+
T Consensus 14 ~~~~~~~~~~~~~~~w~~wK~~L~~~V~---------------~ge~~Gmsee~I~~~A~~iGd-~La~~vdP~N~ 73 (104)
T 3D0W_A 14 MNAMHGTIKEDILKDFEEFKGYLKKQVN---------------RGKKLGLDDGKLVKSAAILGD-YLAKHEEPQNG 73 (104)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHH---------------HHHHHHHTTTCCCCHHHHHHH-HHHTCCCCCSH
T ss_pred HHhcChhhHHHHHHcHHHHHHHHHHHHH---------------HHHHcCCCHHHHHHHHHHHHH-HHHhCCCCCCH
No 11
>7BQB_A NF6; de novo designed protein, DE NOVO PROTEIN; NMR {synthetic construct}
Probab=33.22 E-value=3.1e+02 Score=21.21 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=0.0 Template_Neff=1.300
Q ss_pred CCHHHHHHHHhChhHHHHHHHHhc---------CCCccCCeeehhhHHH----HHHcCCCHHHHHH
Q FD01845383_002 17 ATVQDVENAMADSGVREGVKDALR---------GNGGMHEWFPVAQADK----AKDLGYTYDELMK 69 (147)
Q Consensus 17 ls~~e~~~l~~~~~~k~~I~~~LR---------~~GG~HEWl~Vs~a~k----~K~wG~sa~ei~~ 69 (147)
+|.+++. .+++..+++-| .|-|+-|-..|..-.. +|++|++-+-|.+
T Consensus 21 lseeqlr------riqkeferae~~~r~iii~L~~DGKiEi~EVTSEEdi~rI~KK~Gi~EEiiRR 80 (106)
T 7BQB_A 21 LSEEQLR------RIQKEFERAERKGKLVIVYLTSDGKVEIREVTSEEELEKILKKLGVDEEIIRR 80 (106)
T ss_dssp CCHHHHH------HHHHHHHHHHHHTCEEEEEECTTSCEEEEEESSHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHH------HHHHHHHHhhcCCcEEEEEECCCCcEEEEEcCCHHHHHHHHHHcCCCHHHHHH
No 12
>6DMP_B Designed orthogonal protein DHD13_XAAA_B; De Novo protein, Computational design, coiled coil; NMR {synthetic construct}
Probab=32.39 E-value=1.8e+02 Score=21.37 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=0.0 Template_Neff=1.200
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q FD01845383_002 114 AHRLLSRTLAQATSKAEANAKIESFISK 141 (147)
Q Consensus 114 ~HneL~~~i~~s~s~~e~~~~l~~~a~~ 141 (147)
+|+.|-++|..+.|-+|+.....+...+
T Consensus 26 lhrrle~ivr~~gsseea~k~~~kilee 53 (82)
T 6DMP_B 26 LHRRLEEIVRQSGSSEEAKKEAKKILEE 53 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH
No 13
>3L9K_Z Dynein intermediate chain, cytosolic; dynein, intermediate chain, IC, LC7, light chain 7, km23, roadblock, Hydrolase, Lysosome, Membrane, Microtubule, Motor protein; 3.0A {Drosophila melanogaster}
Probab=31.62 E-value=1.4e+02 Score=18.50 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCHHHHHHHHhChhHHHHHHHHhc
Q FD01845383_002 17 ATVQDVENAMADSGVREGVKDALR 40 (147)
Q Consensus 17 ls~~e~~~l~~~~~~k~~I~~~LR 40 (147)
||++|-..++..+++.+.+.+.-|
T Consensus 1 lseeek~~i~~s~~F~~F~~~ssr 24 (38)
T 3L9K_Z 1 LSEEQKQMIILSENFQRFVVRAGR 24 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHH
No 14
>PF09278.15 ; MerR-DNA-bind ; MerR, DNA binding
Probab=31.20 E-value=1.1e+02 Score=18.14 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred hhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 51 VAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 51 Vs~a~k~K~wG~sa~ei~~~ 70 (147)
+.....++++||+.++|+.+
T Consensus 4 l~~I~~~~~~g~~l~~i~~~ 23 (65)
T Q2S7L4_HAHCH/4 4 LIFAKKARQLGFSVKEINQI 23 (65)
T ss_pred HHHHHHHHHcCCCHHHHHHH
No 15
>2HEO_A Z-DNA binding protein 1; PROTEIN DLM1-Z-DNA COMPLEX, Immune System-DNA COMPLEX; 1.7A {Mus musculus} SCOP: a.4.5.19
Probab=29.36 E-value=2.3e+02 Score=17.86 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ChhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 28 DSGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 28 ~~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
+.+..+.|-..|+..++ +++..+.++.+|++..++...
T Consensus 8 ~~~~~~~Il~~l~~~~~-----~~t~~~la~~l~~~~~~v~~~ 45 (67)
T 2HEO_A 8 GDNLEQKILQVLSDDGG-----PVAIFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp -CHHHHHHHHHHHHHCS-----CEEHHHHHHHHCSCHHHHHHH
T ss_pred cccHHHHHHHHHHhCCC-----CccHHHHHHHhCCCHHHHHHH
No 16
>1ZAR_A Rio2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, TRANSFERASE; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: d.144.1.9, a.4.5.56
Probab=28.50 E-value=2.6e+02 Score=23.21 Aligned_cols=47 Identities=9% Similarity=0.144 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHcCCHHHHHHHHhChhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 11 GEWFDSATVQDVENAMADSGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 11 ~~WFd~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
.+.+..|+++|+. +-..|+..++ .|||+|..... +..+++..++.+.
T Consensus 4 ~~~~~~~~~~~~~-------~l~~~~~~~~----~~~~v~~~~i~--~~~~~~~~~~~~~ 50 (282)
T 1ZAR_A 4 AELYGKMGKHSWR-------IMDAIFKNLW----DYEYVPLQLIS--SHARIGEEKARNI 50 (282)
T ss_dssp HHHHHTCCHHHHH-------HHHHHHTTTT----TCSSEEHHHHH--HHHTCCHHHHHHH
T ss_pred HHHHhhcChHhHH-------HHHHHHhcCC----CCcccCHHHHH--HhcCCCHHHHHHH
No 17
>PF21124.1 ; VinK_C ; VinK acyltransferase small domain
Probab=28.37 E-value=1.2e+02 Score=21.33 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred HHcCCHHHHHHHHhC------------------------hhHHHHHHHHhcCCCcc
Q FD01845383_002 14 FDSATVQDVENAMAD------------------------SGVREGVKDALRGNGGM 45 (147)
Q Consensus 14 Fd~ls~~e~~~l~~~------------------------~~~k~~I~~~LR~~GG~ 45 (147)
|-+++.+++.++++. ...-+.+++++|..||+
T Consensus 2 f~R~p~~~l~~llael~~~G~w~EiS~~ld~~~~~vs~~~~~l~~lk~~vr~~GG~ 57 (62)
T A4X8L5_SALTO/1 2 FVRTPQDRLRDILGELDEAGEWYEISCYVDTDFWMVTLHEGRTDWLAQRLRAGGGL 57 (62)
T ss_pred ceecCHHHHHHHHHHHHHCCCEEEEEEEEcCCEEEEEeehHHHHHHHHHHHhCCCc
No 18
>6E4J_A Uncharacterized protein PF2048.1; UNKNOWN FUNCTION; NMR {Pyrococcus furiosus COM1}
Probab=27.25 E-value=2.3e+02 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHHH
Q FD01845383_002 116 RLLSRTLA----QATSKAEANAKIESFISK 141 (147)
Q Consensus 116 neL~~~i~----~s~s~~e~~~~l~~~a~~ 141 (147)
.+|.++|. .|.|.++|++.|++-+.+
T Consensus 31 ~~ikelve~~~~es~s~ee~i~~Lee~i~~ 60 (80)
T 6E4J_A 31 NELKALVSKISSSVNDLEEAIVVLREEEKK 60 (80)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
No 19
>2MAR_A SXP/RAL-2 family protein; UNKNOWN FUNCTION; NMR {Anisakis simplex}
Probab=27.10 E-value=1.9e+02 Score=21.63 Aligned_cols=27 Identities=7% Similarity=0.321 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHH--HcCCCHHHHHHHHHHHHHHh
Q FD01845383_002 116 RLLSRTL--AQATSKAEANAKIESFISKY 142 (147)
Q Consensus 116 neL~~~i--~~s~s~~e~~~~l~~~a~~~ 142 (147)
.++..|+ +..-|+.+....|..|+.++
T Consensus 19 ~ef~~I~~~~~~lt~~e~~~~l~~w~~~~ 47 (134)
T 2MAR_A 19 KAFFELLKKDETKTDPEIEKDLDAWVDTL 47 (134)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhc
No 20
>3L9Q_A DNA primase large subunit; pol alpha, primase, DNA replication, polymerase, iron-sulfur cluster, DNA-binding, DNA-directed RNA polymerase, Iron, Iron-sulfur, Metal-binding, Nucleotidyltransferase; HET: SO4, SF4; 1.698A {Homo sapiens}
Probab=26.41 E-value=3.2e+02 Score=22.77 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred cCCHHHHHHHHhC--hhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 16 SATVQDVENAMAD--SGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 16 ~ls~~e~~~l~~~--~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
++|.++|..+... |-=-..|-+.||..+-+--+-...-+.-+|..|++.+|+.++
T Consensus 1 ~i~~~~id~~~~~~fPPCm~~l~~~l~~~~~L~h~~R~~l~~FLk~iGl~~ee~~~~ 57 (195)
T 3L9Q_A 1 NSSLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQF 57 (195)
T ss_dssp CEEGGGGHHHHHHHSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTEEEEEEECT
T ss_pred CCCHHHHHHhhhccCCHHHHHHHHHHHhCCCCChHHHHHHHHHHHHcCCCHHHHHHH
No 21
>PF17840.5 ; Tugs ; Tethering Ubl4a to BAGS domain
Probab=26.08 E-value=1.1e+02 Score=19.52 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CHHHHHHcCCHHHHHHH
Q FD01845383_002 9 GFGEWFDSATVQDVENA 25 (147)
Q Consensus 9 ~F~~WFd~ls~~e~~~l 25 (147)
.|..+++++|-++|+.+
T Consensus 27 ~~~~~~~~lSLdDiErl 43 (47)
T W5P2A6_SHEEP/8 27 DYERSLSRLTLDDIERL 43 (47)
T ss_pred HHHHHHHhCCHHHHHHH
No 22
>1OJL_E TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR; RESPONSE REGULATOR, TWO COMPONENT SYSTEM, AAA DOMAIN, NTRC FAMILY, DNA-BINDING, TRANSCRIPTION REGULATION; HET: ATP, PO4; 3.0A {SALMONELLA TYPHIMURIUM}
Probab=25.76 E-value=3.3e+02 Score=21.26 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred CCHHHHHHHHhC---------------hhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 17 ATVQDVENAMAD---------------SGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 17 ls~~e~~~l~~~---------------~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
++.+++...+.+ +.-++.+...++..++ +....++.+|++...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~-------~~~~~a~~l~~~~~~~~~~ 301 (304)
T 1OJL_E 240 ISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGG-------NKTEAARQLGITRKTLLAK 301 (304)
T ss_dssp BCGGGSCTTC--------------CHHHHHHHHHHHHHHHTTS-------CHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHcHHHhcCCcccccCCCCcchhHHHHHHHHHHHHHhCC-------CHHHHHHHhCCCHHHHHHH
No 23
>PF18945.4 ; VipB_2 ; EvpB/VC_A0108, tail sheath gpW/gp25-like domain
Probab=25.33 E-value=2.6e+02 Score=20.97 Aligned_cols=34 Identities=15% Similarity=0.413 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred hHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q FD01845383_002 110 ATSNAH---RLLSRTLAQATSKAEANAKIESFISKYV 143 (147)
Q Consensus 110 gS~~~H---neL~~~i~~s~s~~e~~~~l~~~a~~~l 143 (147)
.|..+| .-..+.|....+.+++-..|++|..+|.
T Consensus 18 ~~R~aHylk~i~R~~ig~~~~~~~~e~~L~~Wl~~yv 54 (112)
T G2IZZ5_PSEUL/3 18 VSRIAHYMKSIMRDKIGSFASRQNVQDFLNTWLAQYV 54 (112)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhh
No 24
>7OGR_B PHIKZ068; RNA polymerase, PhiKZ, non-virion, TRANSCRIPTION; 3.0A {Pseudomonas virus phiKZ}
Probab=25.24 E-value=2.5e+02 Score=27.38 Aligned_cols=69 Identities=0% Similarity=-0.028 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHcCCHHHHHHHHhChhHHHHHHHHhcCCCccCCee--ehhhHHHHHHcCCCHHHHHHhccchhhceeecC
Q FD01845383_002 10 FGEWFDSATVQDVENAMADSGVREGVKDALRGNGGMHEWF--PVAQADKAKDLGYTYDELMKLSSSRNDVWFENV 82 (147)
Q Consensus 10 F~~WFd~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl--~Vs~a~k~K~wG~sa~ei~~~~t~T~~v~F~n~ 82 (147)
+|++|..+++++.+++| +.-+.|++.+..+=....-. ......++=++ +++++|..+...++.+.+...
T Consensus 47 iN~y~~~l~~e~qd~if---~~Y~~i~~i~~~~~d~~~l~~~L~~~v~~iy~~-i~~~~i~~wl~~~~~i~iP~d 117 (521)
T 7OGR_B 47 INDYWSGLSAEAQQHIW---NCYVEIRKIMDMAMHPMRIAMSLSYYIKEMYKA-MPMNSFRRWLLTIGKLYIPVD 117 (521)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHhcCCHHHHHHHH---HHHHHHHHHhhccCCHHHHHHhHHHHHHHHHHh-CCHHHHHHHHHHhCCeeCCCC
No 25
>2LNB_A Z-DNA-binding protein 1; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-BIOLOGY, Protein Structure Initiative, IMMUNE SYSTEM; NMR {Homo sapiens} SCOP: a.4.5.0, l.1.1.1
Probab=24.62 E-value=2.6e+02 Score=19.27 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred hHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 30 GVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 30 ~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
..+..|-+.|+..++ +++..+.++.+|++..+|...
T Consensus 19 ~~~~~IL~~L~~~~~-----~lt~~eIa~~lgv~~~~v~~~ 54 (80)
T 2LNB_A 19 HLEQRILQVLTEAGS-----PVKLAQLVKECQAPKRELNQV 54 (80)
T ss_dssp HHHHHHHHHHHHHTS-----CEEHHHHHHHHTSCHHHHHHH
T ss_pred hHHHHHHHHHHHcCC-----CccHHHHHHHHCCCHHHHHHH
No 26
>PF18460.5 ; HetR_C ; Heterocyst differentiation regulator C-terminal Hood domain
Probab=24.29 E-value=1.6e+02 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=0.0 Template_Neff=3.300
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q FD01845383_002 128 KAEANAKIESFISKYVRNAA 147 (147)
Q Consensus 128 ~~e~~~~l~~~a~~~l~~g~ 147 (147)
++|+=..|+.||++|=..|.
T Consensus 48 ~~ELDe~ir~WADkYH~~gg 67 (79)
T W6FLV3_NODSP/2 48 MAELDEIVREWADRYHQSGG 67 (79)
T ss_pred HHHHHHHHHHHHHHhhhcCC
No 27
>PF18579.5 ; Raf1_HTH ; Rubisco accumulation factor 1 helix turn helix domain
Probab=24.24 E-value=1.2e+02 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred hHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHhc
Q FD01845383_002 30 GVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKLS 71 (147)
Q Consensus 30 ~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~~ 71 (147)
+..+.+...-|.-|.-|||-+.+.+ +.+-|+++..|-+.+
T Consensus 1 ~~~~ll~~Lr~r~G~W~e~a~~~~~--Lq~~G~~p~~I~E~T 40 (61)
T A0A4Q7E3Q4_9CY 1 DIDKLVTQLRHKEGSWVEWGKACQA--LQKAGLKPQEIFEQT 40 (61)
T ss_pred CHHHHHHHHHHhcCcHHHHHHHHHH--HHHCCCCHHHHHHHh
No 28
>PF21450.1 ; RIF2_lid ; RIF2, AAA+ lid domain
Probab=24.02 E-value=2.6e+02 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=0.0 Template_Neff=1.500
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Q FD01845383_002 112 SNAHRLLSRTLAQATSKAEANAKIES 137 (147)
Q Consensus 112 ~~~HneL~~~i~~s~s~~e~~~~l~~ 137 (147)
+.+-+..-++|-+|.+.++++.+|.+
T Consensus 56 tylfnaytei~vqsktfd~lld~i~n 81 (85)
T RIF2_YEAST/284 56 TYLFNAYTEIIVQSRTFDELLDKIRN 81 (85)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHh
No 29
>PF03849.18 ; Tfb2 ; Transcription factor Tfb2
Probab=23.75 E-value=1.3e+02 Score=26.22 Aligned_cols=28 Identities=4% Similarity=0.064 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHcCCHHHHHHHHhChhHHHHHHHHh
Q FD01845383_002 12 EWFDSATVQDVENAMADSGVREGVKDAL 39 (147)
Q Consensus 12 ~WFd~ls~~e~~~l~~~~~~k~~I~~~L 39 (147)
+|+.+|+++++..++++|.....|-+.|
T Consensus 1 ~~~~~l~~~~L~~ll~~~~~~~~i~~~L 28 (354)
T R4XAU2_TAPDE/1 1 DYLEQLPPTTNSRLYSRPATCLAIFRLL 28 (354)
T ss_pred ChhhhCCHHHHHHHhcCHHHHHHHHhcC
No 30
>6SRS_Q Fanconi anaemia protein FANCL; Fanconi Anaemia core complex E3 ligase DNA repair, LIGASE; 4.6A {Gallus gallus}
Probab=23.55 E-value=3.4e+02 Score=18.47 Aligned_cols=32 Identities=6% Similarity=0.176 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccc
Q FD01845383_002 114 AHRLLSRTLAQATSKAEANAKIESFISKYVRN 145 (147)
Q Consensus 114 ~HneL~~~i~~s~s~~e~~~~l~~~a~~~l~~ 145 (147)
....+.+.++++.+..+|+..|..+.++.++.
T Consensus 60 ~~~~~~~~l~~~~~~~~fL~el~~~le~~~~~ 91 (91)
T 6SRS_Q 60 YQHILKQRLHSCPDLVSFVVELKTILEIALKA 91 (91)
T ss_pred cHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
No 31
>4YNL_M Heterocyst differentiation control protein; Heterocyst differentiation, Transcription factor, TRANSCRIPTION; 2.1A {Nostoc sp. PCC 7120}
Probab=23.54 E-value=1.7e+02 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q FD01845383_002 128 KAEANAKIESFISKYVRNAA 147 (147)
Q Consensus 128 ~~e~~~~l~~~a~~~l~~g~ 147 (147)
++|+=+.|+.||++|=..|.
T Consensus 57 l~ELDeliR~WADkYHq~gG 76 (90)
T 4YNL_M 57 MQELDEIIRTWADKYHQVGG 76 (90)
T ss_dssp HHHHHHHHHHHHHHHCCBTB
T ss_pred HHHHHHHHHHHHHHhhccCC
No 32
>PF13040.10 ; Fur_reg_FbpB ; Fur-regulated basic protein B
Probab=23.46 E-value=1.7e+02 Score=18.76 Aligned_cols=26 Identities=8% Similarity=0.337 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHcCCHHHHHHHHhChhHHHHHHHHh
Q FD01845383_002 14 FDSATVQDVENAMADSGVREGVKDAL 39 (147)
Q Consensus 14 Fd~ls~~e~~~l~~~~~~k~~I~~~L 39 (147)
|..|=.+.-.+||.|++.-+.|..+|
T Consensus 8 f~eLv~~Nk~eil~D~~~m~~IE~ki 33 (39)
T A8FDR2_BACP2/5 8 FEELVLENKKELLSNEEFLNQLEEKL 33 (39)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHH
No 33
>PF19754.3 ; DUF6241 ; Family of unknown function (DUF6241)
Probab=22.91 E-value=2.6e+02 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHH
Q FD01845383_002 116 RLLSRTLAQAT--SKAEANAKIESFIS 140 (147)
Q Consensus 116 neL~~~i~~s~--s~~e~~~~l~~~a~ 140 (147)
+.|.++|+.+. .++.++.+|.+|.+
T Consensus 26 ~~l~~~v~~~~~~~~~~~~~IL~rW~~ 52 (90)
T A0A3A9K6A4_9BA 26 KRLIDVVEANEYENKTIYLSILERWES 52 (90)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHh
No 34
>3L0O_B Transcription termination factor rho; helicase, Rho factor, RNA capture mechanism, transcription termination, ATP-binding, Hydrolase, Nucleotide-binding, RNA-binding, Transcription, Transcription regulation; HET: IUM, SO4; 2.35A {Thermotoga maritima} SCOP: c.37.1.0, b.40.4.0
Probab=22.50 E-value=2.8e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q FD01845383_002 111 TSNAHRLLSRTLAQATSKAEANAKIESFISKY 142 (147)
Q Consensus 111 S~~~HneL~~~i~~s~s~~e~~~~l~~~a~~~ 142 (147)
+......|.+.|+...+-++|+..+..+.+++
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 427 (427)
T 3L0O_B 396 EEEGLTLILNKLSETSSNEEFLKLIDKEKARY 427 (427)
T ss_dssp TTHHHHHHHHHHHTCSSHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
No 35
>7BZH_A Sul7s; Archaea, Crenarchaea, Sulfolobus, DNA binding protein; NMR {Sulfolobus islandicus}
Probab=22.36 E-value=3.2e+02 Score=17.96 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred hHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 30 GVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 30 ~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
++.+.|-..|+..| .++..+.++.+|++...+.+.
T Consensus 3 ~~~~~Il~~L~~~~------~lt~~el~~~l~i~~~~v~~~ 37 (59)
T 7BZH_A 3 DVKQSVEKIIKDRE------WVTFNDLLKYIPYPAPEVYDA 37 (59)
T ss_dssp THHHHHHHHHHHHS------EEEHHHHHHHCCSCHHHHHHH
T ss_pred hHHHHHHHHHHhCC------CeeHHHHHHHCCCCHHHHHHH
No 36
>PF12244.12 ; DUF3606 ; Protein of unknown function (DUF3606)
Probab=21.83 E-value=1.1e+02 Score=19.69 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHcCCCHHHHHHhccchh
Q FD01845383_002 57 AKDLGYTYDELMKLSSSRN 75 (147)
Q Consensus 57 ~K~wG~sa~ei~~~~t~T~ 75 (147)
+++||+|.++|+.....++
T Consensus 25 a~k~~vs~~~l~~av~~vG 43 (53)
T C4LBJ3_TOLAT/5 25 CKELGCTDRELAAAVRAVG 43 (53)
T ss_pred HHHHCCCHHHHHHHHHHHC
No 37
>6G1T_A AM32; Repressor, Protein-DNA complex, Type IV secretion system, DNA BINDING PROTEIN; HET: EPE; 1.93A {Enterococcus faecalis}
Probab=21.77 E-value=5.6e+02 Score=19.85 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCHHHHHHHHhChhHHHHHHHHhcCCCccC-------------------------CeeehhhHHHHHHcCCCHHHHHHh
Q FD01845383_002 17 ATVQDVENAMADSGVREGVKDALRGNGGMH-------------------------EWFPVAQADKAKDLGYTYDELMKL 70 (147)
Q Consensus 17 ls~~e~~~l~~~~~~k~~I~~~LR~~GG~H-------------------------EWl~Vs~a~k~K~wG~sa~ei~~~ 70 (147)
+|.+|+.+++.-. .+.|....| .|-+. +++.+++| ++.||++...|.++
T Consensus 10 ~t~ke~a~~l~v~--~~ti~~~~~-~~kl~~~~~~~~~~~g~~lf~~~~~~~~~~~~lT~~Ea--Ae~lgvs~~tV~~~ 83 (122)
T 6G1T_A 10 YTAKEMSERIGKN--RNYLSQAYR-NNKHEILKNFNYRKIGGTIIFSDNPNNDLSQLITAKEA--SQLLGKNDEYFAHI 83 (122)
T ss_dssp EEHHHHHHHTTCC--TTHHHHHHH-TTCHHHHTTSEEEEETTEEEEESCTTCCGGGEEEHHHH--HHHTTCCTTHHHHH
T ss_pred ccHHHHHHHHCCC--HHHHHHHHH-CCCCcccccceeeeeCCEEeccCCCCCccccCccHHHH--HHHHCCCHHHHHHH
No 38
>4MDB_A Mariner Mos1 transposase; RNase-H fold, DDD motif, recombinase, DNA transposition, DNA integration, transposon DNA, HYDROLASE-HYDROLASE INHIBITOR complex; HET: RLT; 1.7A {Drosophila mauritiana}
Probab=21.64 E-value=3.7e+02 Score=18.52 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=0.0 Template_Neff=14.300
Q ss_pred HHHHHHcCCHHHHHHHHhChhHHHHHHHHhcCCCccCC
Q FD01845383_002 10 FGEWFDSATVQDVENAMADSGVREGVKDALRGNGGMHE 47 (147)
Q Consensus 10 F~~WFd~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HE 47 (147)
+.+++++++.+.+..++..= ...+...+...|+.+|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 225 (225)
T 4MDB_A 190 LDEWFAAKDDEFYWRGIHKL--PERWEKCVASDGKYFE 225 (225)
T ss_dssp HHHHHHHSCHHHHHHHHHTH--HHHHHHHHHTTTSCCC
T ss_pred HHHHHHcCChHHHHHHHHhh--HHHHHHHHhhcCcccC
No 39
>PF20184.2 ; DUF6547 ; Family of unknown function (DUF6547)
Probab=20.89 E-value=1.2e+02 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHcCCHHHHHHHHhChhHHHHHHHHhcCCCccCCeeeh
Q FD01845383_002 10 FGEWFDSATVQDVENAMADSGVREGVKDALRGNGGMHEWFPV 51 (147)
Q Consensus 10 F~~WFd~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl~V 51 (147)
+++|+.+||+++.. -+++.|..++. +++|..|.+
T Consensus 41 l~~~l~~Ls~eq~~------~l~~li~~~vd--~~if~~L~~ 74 (117)
T A0A3G9J3P4_9BA 41 INEFINGLSQDQKQ------ILAHIIQQSRD--GGIHDVLVF 74 (117)
T ss_pred HHHHHhcCCHHHHH------HHHHHHHHHHH--HhHHHHHHH
No 40
>PF10078.13 ; DUF2316 ; Uncharacterized protein conserved in bacteria (DUF2316)
Probab=20.46 E-value=4.7e+02 Score=19.64 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred cCCHHHHHHHHhChhHHHHHHHHhcCCCccCCeeehhhHHHHHHcCCCHHHHHH
Q FD01845383_002 16 SATVQDVENAMADSGVREGVKDALRGNGGMHEWFPVAQADKAKDLGYTYDELMK 69 (147)
Q Consensus 16 ~ls~~e~~~l~~~~~~k~~I~~~LR~~GG~HEWl~Vs~a~k~K~wG~sa~ei~~ 69 (147)
+|+++|.. ..++.+...+...| ++.+..+..+|++.++|..
T Consensus 2 SL~~~q~~------~T~~EL~~n~~~sg-------Lt~~~ia~dL~~s~~~l~~ 42 (89)
T F2I7H9_AERUA/1 2 SLTLAQSG------ETKQALKTAFTKTG-------LSKQELAETLETSESYLDQ 42 (89)
T ss_pred CCCHHHHH------HHHHHHHHHHHHhC-------CCHHHHHHHhCCCHHHHHH
No 41
>4PS6_A Inhibitor of vertebrate lysozyme; PF08816 family, Ivy, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TOXIN; HET: MSE; 1.25A {Pseudomonas aeruginosa} SCOP: l.1.1.1, d.233.1.1
Probab=20.29 E-value=1.7e+02 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHhChhHHHHHHHHhcCCCccCCee
Q FD01845383_002 22 VENAMADSGVREGVKDALRGNGGMHEWF 49 (147)
Q Consensus 22 ~~~l~~~~~~k~~I~~~LR~~GG~HEWl 49 (147)
+.+++ +|.++..+.+.|+......+|+
T Consensus 8 ~~~ll-~p~~~~a~~~~l~~~~~~~~wv 34 (130)
T 4PS6_A 8 FELLG-QPGYKATWHAMFKGESDVPKWV 34 (130)
T ss_dssp HHHTT-SHHHHHHHHHHTTTCCSCCHHH
T ss_pred HHHhc-CHHHHHHHHHHhCCCcCCChhH