Query FD01847507_03300 hypothetical protein
Match_columns 206
No_of_seqs 103 out of 124
Neff 5.87533
Searched_HMMs 86581
Date Tue Feb 27 19:01:11 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8986487.hhr -oa3m ../results/8986487.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13265.10 ; DUF4056 ; Protein 100.0 1.7E-30 1.9E-35 229.6 9.7 146 2-165 56-232 (266)
2 PF10043.13 ; DUF2279 ; Predict 44.3 1.8E+02 0.0021 20.8 6.1 46 85-136 35-80 (89)
3 8K00_B Double-strand break rep 41.1 21 0.00025 22.8 0.4 10 123-132 6-15 (31)
4 PF20196.2 ; DUF6559 ; Family o 33.1 49 0.00057 26.8 1.5 44 85-132 42-85 (111)
No 1
>PF13265.10 ; DUF4056 ; Protein of unknown function (DUF4056)
Probab=99.97 E-value=1.7e-30 Score=229.65 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=123.6 Template_Neff=6.300
Q ss_pred HHhhcCCccccccCCcEEEecccEeeeccccCCc--cHHHHHHHHHhccccCCcceEEEEEecceecccccceeeeceeE
Q FD01847507_033 2 REEIKGNQKLDELKFGIVYTEVLGWLDMGHAGGD--DISLLKQQFDAGESSGNKYYSVIYKQNMRIRSKTLRQEMGTGKF 79 (206)
Q Consensus 2 r~dI~d~~~~~~~~~~lvYT~~~GWID~gHA~~~--~~~~L~~~i~~~~~~~~~~~~v~y~Q~M~~~~~~~~~~~~~g~~ 79 (206)
|+||.+. ...+.||||||+|||||++|+++. .+..|+++|..+... .+.|.|.|+|+.+. +..++.
T Consensus 56 ~~~i~~~---~~e~~GlvYT~r~G~ID~~H~r~~AD~t~~L~~~i~~~l~~---~~~v~~~~e~~~~~------v~~~~~ 123 (266)
T Q7MB90_PHOLL/4 56 VASLTGL---SNEKVGMIYTRRGGFIDISHVRDTADNAVFLFSQIWPRLGE---EWQIELSSELALRR------IQFYQF 123 (266)
T ss_pred chhhccC---ccccCeeEEEEeceeccHHHhccCchHHHHHHHHHHhhcCc---eEEEEeehhhhcCc------eecccC
Confidence 5566542 347899999999999999999999 999999999988644 48999999998764 444433
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH------HHHH---HHHhhcccccccCCCCChhhHHHHHHHhhhccC--------
Q FD01847507_033 80 TRWEIQRGRTQDEINSIMLAMMMNTA------LKFE---AYQSLKAFSWHTDSGFSGEDLVSDLFGFYRFMI-------- 142 (206)
Q Consensus 80 ~~~~Ik~gls~~e~~sVAL~I~m~~S------~~FE---~~Q~~~~~~~~tdSgFS~EDLvSnliGFYrav~-------- 142 (206)
. .+++.+||+.|||+|++.+| ++|| .+|..++|+ .++|+||.|||+|||||||+|+.
T Consensus 124 ---~--~~ls~~~~~~vAl~ia~~~a~~~~~WHEi~tW~g~~s~~~~~-e~~SaFS~EDl~SNllG~~~a~~~l~~~~~~ 197 (266)
T Q7MB90_PHOLL/4 124 ---T--PPASIEQRYTLTAYLAAKLAFELAAWHEIAQWYGYQSVPGFS-EKVSAFSPEDLYSNLLGARLSLSLILAGQVP 197 (266)
T ss_pred ---C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCC-CCCCCCChHHHHhcHHHHHHHHHHHHcCCCC
Confidence 2 29999999999999999999 9999 566666565 57999999999999999999988
Q ss_pred ------------cccHHHHcCCCCHHHhhcccccc
Q FD01847507_033 143 ------------PGKYSSLVRPVSYNDAVSRWDFY 165 (206)
Q Consensus 143 ------------~~~~~~~~~~vs~~~al~~Wd~y 165 (206)
..+....|++|++++|.+.|+..
T Consensus 198 ~~~~y~~amt~~l~~~L~~L~~v~~~~a~~~~~~v 232 (266)
T Q7MB90_PHOLL/4 198 SMKQYRLSMQAILPPALRELEALSPDETRKMFEQV 232 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 24778889999999999999977
No 2
>PF10043.13 ; DUF2279 ; Predicted periplasmic lipoprotein (DUF2279)
Probab=44.26 E-value=1.8e+02 Score=20.80 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHH
Q FD01847507_033 85 QRGRTQDEINSIMLAMMMNTALKFEAYQSLKAFSWHTDSGFSGEDLVSDLFG 136 (206)
Q Consensus 85 k~gls~~e~~sVAL~I~m~~S~~FE~~Q~~~~~~~~tdSgFS~EDLvSnliG 136 (206)
.++.+...+.-+++.+.+-.+..-|-.|... . ..|+..|+..|++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~E~~q~~~-~-----r~~~~~D~~~~~~G 80 (89)
T I5B2G2_9DELT/7 35 HWCFEKENAALYGSLSLFAIMGYMEFGDSFS-E-----YGFSYEDMIANFLG 80 (89)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-c-----CCCCHHHHHHHHHH
No 3
>8K00_B Double-strand break repair protein MRE11; RPA, 70N, MRE11, DNA BINDING PROTEIN; 1.4A {Homo sapiens}
Probab=41.10 E-value=21 Score=22.81 Aligned_cols=10 Identities=60% Similarity=0.919 Sum_probs=0.0 Template_Neff=2.300
Q ss_pred CCCChhhHHH
Q FD01847507_033 123 SGFSGEDLVS 132 (206)
Q Consensus 123 SgFS~EDLvS 132 (206)
|+||.+||+|
T Consensus 6 sa~s~~dlms 15 (31)
T 8K00_B 6 SAFSADDLMS 15 (31)
T ss_dssp CCCCHHHHHH
T ss_pred cccCHHHhcc
No 4
>PF20196.2 ; DUF6559 ; Family of unknown function (DUF6559)
Probab=33.10 E-value=49 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH
Q FD01847507_033 85 QRGRTQDEINSIMLAMMMNTALKFEAYQSLKAFSWHTDSGFSGEDLVS 132 (206)
Q Consensus 85 k~gls~~e~~sVAL~I~m~~S~~FE~~Q~~~~~~~~tdSgFS~EDLvS 132 (206)
+.|++ ..-...|+|||++-+. .++....-..+..+.|+.+||.+
T Consensus 42 ~~~l~-~~~~~yAyamf~~~~~---~lR~eia~~~F~g~~f~~~~~~~ 85 (111)
T A0A0C5WH24_9GA 42 QSGLS-RRYEHYAYALFGDQYP---DLHQELADGLFAGTAFNALQIID 85 (111)
T ss_pred HcCCC-ccHHHHHhHHHcCCch---HHHHHHHHHHhcCCCCCHHHHHH