Query FD01876784_02410 hypothetical protein
Match_columns 60
No_of_seqs 141 out of 909
Neff 7.17205
Searched_HMMs 86581
Date Tue Feb 27 18:58:13 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4953530.hhr -oa3m ../results/4953530.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4F0A_B Protein Wnt-8; Wnt sign 97.1 0.0021 2.4E-08 43.2 4.5 52 3-60 65-154 (316)
2 7DRT_A Protein Wnt-3a; Wnt sig 96.8 0.0041 4.7E-08 42.0 3.8 52 3-60 110-198 (352)
3 8TZO_A Protein Wnt-7a; SIGNALI 96.3 0.019 2.2E-07 39.1 4.9 52 3-60 105-195 (349)
4 PF00110.23 ; wnt ; wnt family 95.6 0.03 3.4E-07 37.6 3.1 36 16-56 121-156 (316)
5 6PXZ_C Serum amyloid A-3 prote 91.5 0.54 6.2E-06 27.3 3.0 49 6-54 37-87 (104)
6 PF00277.22 ; SAA ; Serum amylo 89.2 0.91 1.1E-05 26.7 2.6 49 6-54 34-92 (109)
7 7ZH7_C Serum amyloid A protein 82.9 2.6 3E-05 25.5 2.4 51 1-54 49-112 (129)
8 4KRR_A Wnt inhibitor of Dorsal 74.9 4 4.6E-05 26.7 1.6 31 16-59 98-128 (221)
9 6LQO_I Tegument protein UL51 h 64.5 16 0.00018 23.1 2.5 16 3-18 80-95 (131)
10 6DSO_F Serum amyloid A-2 prote 63.5 14 0.00016 20.6 2.0 46 6-51 36-83 (83)
11 8C3E_A Engineered protein LCB2 63.2 35 0.0004 18.3 4.6 30 2-31 7-37 (58)
12 6ZJ3_Lo Ribosomal protein eLEg 41.1 31 0.00036 19.2 1.0 8 5-12 19-26 (72)
13 5WLB_C 225-15 b; Ras binders, 27.9 1.2E+02 0.0014 14.7 1.7 10 6-15 20-29 (34)
14 PF05596.15 ; Taeniidae_ag ; Ta 26.6 57 0.00066 17.4 0.6 12 47-58 14-25 (55)
15 8AP6_D subunit-d; ATP synthase 26.0 79 0.00092 23.2 1.3 8 3-10 106-113 (370)
16 PF11248.12 ; DUF3046 ; Protein 20.3 2.8E+02 0.0032 15.3 2.7 26 4-29 1-26 (62)
No 1
>4F0A_B Protein Wnt-8; Wnt signaling, Ligand-receptor complex, Wnt, Frizzled, Fatty acid acylation, Glycosylation, SIGNALING PROTEIN; HET: BMA, MAN, FUC, PAM, NAG; 3.25A {Mus musculus}
Probab=97.09 E-value=0.0021 Score=43.24 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHH--------------------------------------CHHHHHHHHHHHHHcCCCCCCCHHHHH
Q FD01876784_024 3 ALRHCYLMCRMTKTF--------------------------------------GSTMADAIGKNHEAAGDRGGQPANERL 44 (60)
Q Consensus 3 A~RH~~w~a~~~~~~--------------------------------------g~~~A~~~g~aHE~~~~~~~~~~~d~~ 44 (60)
||.|++++|.++..+ |..+++.+.+.+|.... ....
T Consensus 65 Af~~Al~sA~v~~~ia~aC~~G~l~~C~C~~~~~~~~~~~~~~wggC~dn~~~g~~~s~~fld~~~~~~~------~~~~ 138 (316)
T 4F0A_B 65 SFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIGGRGWVWGGCSDNAEFGERISKLFVDGLETGQD------ARAL 138 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSSCCCCCTTTTSEEETTEEECSCCCCHHHHHHHHHHHHHHHCCSSS------HHHH
T ss_pred HHhHHHHhcccchhhhcccccCCCCCCccCCCCCCCCCCCCceecccccchHHhHHHHHHHHhhhhcccC------HHHH
Q ss_pred HHHHHHHHHHHHhcCC
Q FD01876784_024 45 MDLKNNTVGISCGNSP 60 (60)
Q Consensus 45 MDl~NN~~Gr~i~~~~ 60 (60)
|++|||.+||.+....
T Consensus 139 ~~~HN~~vGr~~v~~~ 154 (316)
T 4F0A_B 139 MNLHNNEAGRLAVKET 154 (316)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHh
No 2
>7DRT_A Protein Wnt-3a; Wnt signaling Wnt secretion WLS Wnt3a cryo-EM palmitoleoylation membrane protein; HET: CLR, PCW, PAM, NAG, LPE; 2.2A {Homo sapiens}
Probab=96.77 E-value=0.0041 Score=42.05 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHHHH-------------------------------------HHCHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q FD01876784_024 3 ALRHCYLMCRMTK-------------------------------------TFGSTMADAIGKNHEAAGDRGGQPANERLM 45 (60)
Q Consensus 3 A~RH~~w~a~~~~-------------------------------------~~g~~~A~~~g~aHE~~~~~~~~~~~d~~M 45 (60)
||.|++++|.++. .+|..+++.+.+.+|.... ....|
T Consensus 110 Af~~Al~sA~v~~~ia~~C~~g~l~~c~C~~~~~~~~~~~~~~~gc~~~~~~g~~~~~~f~d~~~~~~~------~~~~~ 183 (352)
T 7DRT_A 110 AFVHAIASAGVAFAVTRSCAEGTAAICGCSSRHQGSPGKGWKWGGCSEDIEFGGMVSREFADARENRPD------ARSAM 183 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSSSCCCSCCCSSSSCTTTTCCCCTTSHHHHHHHHHGGGSTTSSS------HHHHH
T ss_pred HHHHHHHhchHHHHHHHhcccCCCcccccCCCCCCCCCCCceecCchhhhhhHhhhhHHHhcccccCCC------hHHHH
Q ss_pred HHHHHHHHHHHhcCC
Q FD01876784_024 46 DLKNNTVGISCGNSP 60 (60)
Q Consensus 46 Dl~NN~~Gr~i~~~~ 60 (60)
++|||.+||.+....
T Consensus 184 ~~hN~~vGr~~v~~~ 198 (352)
T 7DRT_A 184 NRHNNEAGRQAIASH 198 (352)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HhcchHHHHHHHHhc
No 3
>8TZO_A Protein Wnt-7a; SIGNALING PROTEIN; HET: PAM, POV, BMA, GLC, NAG, MAN;{Homo sapiens}
Probab=96.34 E-value=0.019 Score=39.11 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHHHHHHH---------------------------------------CHHHHHHHHHHHHHcCCCCCCCHHHH
Q FD01876784_024 3 ALRHCYLMCRMTKTF---------------------------------------GSTMADAIGKNHEAAGDRGGQPANER 43 (60)
Q Consensus 3 A~RH~~w~a~~~~~~---------------------------------------g~~~A~~~g~aHE~~~~~~~~~~~d~ 43 (60)
||.|++++|.++..+ |..+++.+.+.+|.... ...
T Consensus 105 Af~~Al~sA~v~~~ia~~C~~g~l~~C~C~~~~~~~~~~~~~~~~~gC~~~~~~g~~~~~~fld~~~~~~~------~~~ 178 (349)
T 8TZO_A 105 AFTYAIIAAGVAHAITAACTQGNLSDCGCDKEKQGQYHRDEGWKWGGCSADIRYGIGFAKVFVDAREIKQN------ART 178 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSSCC------------CHHHHCCCCHHHHHHHHHHHHHGGGCCSCS------HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccCCCCCCcCCCccCCCCceeccchhhHHHHHHHHHHHhcHHHHHhc------HHH
Q ss_pred HHHHHHHHHHHHHhcCC
Q FD01876784_024 44 LMDLKNNTVGISCGNSP 60 (60)
Q Consensus 44 ~MDl~NN~~Gr~i~~~~ 60 (60)
.|++|||.+|+.+....
T Consensus 179 ~~~~HN~~vGr~~v~~~ 195 (349)
T 8TZO_A 179 LMNLHNNEAGRKILEEN 195 (349)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHhhccchhhhhHHHhc
No 4
>PF00110.23 ; wnt ; wnt family
Probab=95.57 E-value=0.03 Score=37.60 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHCHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q FD01876784_024 16 TFGSTMADAIGKNHEAAGDRGGQPANERLMDLKNNTVGISC 56 (60)
Q Consensus 16 ~~g~~~A~~~g~aHE~~~~~~~~~~~d~~MDl~NN~~Gr~i 56 (60)
.+|..+++.+.+.+|.... .....|++|||.+||.+
T Consensus 121 ~~g~~~s~~fld~~~~~~~-----~~~~~~~~HN~~vGr~~ 156 (316)
T E9FZU6_DAPPU/1 121 RYGSNFARQFIDARERKMR-----DSRALMNLHNNRVGRKA 156 (316)
T ss_pred chhHHHHHHHhhHhHHccc-----chHHHHhhccchHHHHH
No 5
>6PXZ_C Serum amyloid A-3 protein; Retinol binding, Asymmetric, Trimer, TRANSPORT PROTEIN; HET: DMU; 1.7A {Mus musculus}
Probab=91.55 E-value=0.54 Score=27.31 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHH--HCHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Q FD01876784_024 6 HCYLMCRMTKT--FGSTMADAIGKNHEAAGDRGGQPANERLMDLKNNTVGI 54 (60)
Q Consensus 6 H~~w~a~~~~~--~g~~~A~~~g~aHE~~~~~~~~~~~d~~MDl~NN~~Gr 54 (60)
||-.++..++. .|...|..|.+..|....+...+..++..|..-|+.||
T Consensus 37 h~~an~~A~~rg~~g~~~a~~iS~~re~~~~~~~~~~~ds~~d~~An~~Gr 87 (104)
T 6PXZ_C 37 HARGNYDAARRGPGGAWAAKVISDAREAVQKFTGHGAEDSRADQFANEWGR 87 (104)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHH
T ss_pred cchhhhHhHHcCchHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHhcc
No 6
>PF00277.22 ; SAA ; Serum amyloid A protein
Probab=89.15 E-value=0.91 Score=26.66 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHH--HCHHHHHHHHHHHHHcCCCC--------CCCHHHHHHHHHHHHHHH
Q FD01876784_024 6 HCYLMCRMTKT--FGSTMADAIGKNHEAAGDRG--------GQPANERLMDLKNNTVGI 54 (60)
Q Consensus 6 H~~w~a~~~~~--~g~~~A~~~g~aHE~~~~~~--------~~~~~d~~MDl~NN~~Gr 54 (60)
||-.++..++. .|...|..|.+..|....+. +.+..|+..|..-|..||
T Consensus 34 h~~an~~Aa~rg~~g~~~a~~iS~~rE~~~~~~~~~~~~~~g~~~~Ds~aDq~An~~Gr 92 (109)
T G5AK06_HETGA/2 34 HARGNYDAAQRGPGGVWAAKVLSNAGKYLQGISNRFYYGMSNYGSENIESNQKAEEWGR 92 (109)
T ss_pred cchhchhhhhcCcchHHHHHhhhhhHHHHHHHhccccccccccchHHHHHHHHHHHhcc
No 7
>7ZH7_C Serum amyloid A protein; AA amyloidosis, cat, Serum amyloid A, PROTEIN FIBRIL;{Felis catus}
Probab=82.94 E-value=2.6 Score=25.51 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred ChHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHcC-----------CCCCCCHHHHHHHHHHHHHHH
Q FD01876784_024 1 ADALRHCYLMCRMTKT--FGSTMADAIGKNHEAAG-----------DRGGQPANERLMDLKNNTVGI 54 (60)
Q Consensus 1 ~dA~RH~~w~a~~~~~--~g~~~A~~~g~aHE~~~-----------~~~~~~~~d~~MDl~NN~~Gr 54 (60)
.|=|-||-.++..++. .|...|+.|.++.|... . .+..|+.-|..-|+.||
T Consensus 49 ~DkYfh~kan~eAa~rg~gg~~~a~~iS~~rE~~~~~~~~~~~g~~g---~~~~ds~~D~~An~~Gr 112 (129)
T 7ZH7_C 49 ADKYFHARGNYDAAQRGPGGAWAAKVISDARENSQRVTDFFRHGNSG---HGAEDSKADQEANEWGR 112 (129)
T ss_dssp CEEEEEEESCSTTCEESCCSEEEEEEEEEEECCEEEEEEEEECCCC---------------------
T ss_pred CCccccchhchhhHhcCCchHHHHHHhhhhHHHHHHHhhhhcCCCCC---CchHhhHHHHHHHHhcC
No 8
>4KRR_A Wnt inhibitor of Dorsal protein; WntD, uncomplexed Wnt, N-terminal domain, linker, WNT, growth factor, WNT signaling, extracellular, SIGNALING PROTEIN; HET: GOL; 2.124A {Drosophila melanogaster}
Probab=74.90 E-value=4 Score=26.72 Aligned_cols=31 Identities=10% Similarity=-0.275 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHCHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q FD01876784_024 16 TFGSTMADAIGKNHEAAGDRGGQPANERLMDLKNNTVGISCGNS 59 (60)
Q Consensus 16 ~~g~~~A~~~g~aHE~~~~~~~~~~~d~~MDl~NN~~Gr~i~~~ 59 (60)
.+|..+++.+.+ .. .+ |++|||.+||.+...
T Consensus 98 ~~g~~~~~~fld-----~~---~~-----~~~HN~~vGr~~v~~ 128 (221)
T 4KRR_A 98 TKALEQYEKHFG-----SG---SG-----AIGHNRRVVGALLQR 128 (221)
T ss_dssp HHHHHHHHHHSC-----CC---CH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-----CC---CC-----cccchHHHHHHHHHH
No 9
>6LQO_I Tegument protein UL51 homolog; Epstein-Barr virus (EBV)/Human herpesvirus 4 (HHV-4), tegument protein BBEF2 (CEP1), tegument protein BSRF1, BBRF2-BSRF1 complex, VIRAL; HET: ACT, GOL; 3.09112613349A {Human gammaherpesvirus 4}
Probab=64.47 E-value=16 Score=23.10 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred HHHHHHHHHHHHHHHC
Q FD01876784_024 3 ALRHCYLMCRMTKTFG 18 (60)
Q Consensus 3 A~RH~~w~a~~~~~~g 18 (60)
++||..|+++++...|
T Consensus 80 svq~iIWNtMis~A~g 95 (131)
T 6LQO_I 80 AVRSVIWNTMISLAVS 95 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
No 10
>6DSO_F Serum amyloid A-2 protein; AA-amyloidosis, fibril, cross-beta, helical, PROTEIN FIBRIL; 3.0A {Mus musculus}
Probab=63.51 E-value=14 Score=20.63 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHH--HCHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q FD01876784_024 6 HCYLMCRMTKT--FGSTMADAIGKNHEAAGDRGGQPANERLMDLKNNT 51 (60)
Q Consensus 6 H~~w~a~~~~~--~g~~~A~~~g~aHE~~~~~~~~~~~d~~MDl~NN~ 51 (60)
||-.++..++. .|...|+.|.++.|....+.+.+..|+..|..-|+
T Consensus 36 h~~~n~~a~~~g~~g~~~a~~is~~re~~~~~~g~~~~ds~adq~An~ 83 (83)
T 6DSO_F 36 HARGNYDAAQRGPGGVWAAEKISDARESFQEFFGRGHEDTMADQEANR 83 (83)
T ss_dssp EEESCCSCSEECCCCEEECSEEESCBSCSEEEEC--------------
T ss_pred ccccccchHhcCchhHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHhcC
No 11
>8C3E_A Engineered protein LCB2; SARS-Cov-2, mini-protein, antiviral, blocking ligand, ANTIVIRAL PROTEIN; HET: GOL; 2.1A {synthetic construct}
Probab=63.18 E-value=35 Score=18.26 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred hHHHHHHHHHHHHHHHC-HHHHHHHHHHHHH
Q FD01876784_024 2 DALRHCYLMCRMTKTFG-STMADAIGKNHEA 31 (60)
Q Consensus 2 dA~RH~~w~a~~~~~~g-~~~A~~~g~aHE~ 31 (60)
|.+|..+.+|.+...-| ++.|+.|...-|+
T Consensus 7 dsvryllymaelryeqgnpekakkilemaef 37 (58)
T 8C3E_A 7 DSVRYLLYMAELRYEQGNPEKAKKILEMAEF 37 (58)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 12
>6ZJ3_Lo Ribosomal protein eLEgr1; Single particle cryo-EM RNA modifications, RIBOSOME; HET: 1MA, 6MZ, MIA, B8N, 5MC, OMU, B8H, MA6, OMC, PSU, OMG, JMH, A2M, UR3, JMC, 7MG; 3.15A {Euglena gracilis}
Probab=41.11 E-value=31 Score=19.15 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHH
Q FD01876784_024 5 RHCYLMCR 12 (60)
Q Consensus 5 RH~~w~a~ 12 (60)
+|.+|+|+
T Consensus 19 khvlwsci 26 (72)
T 6ZJ3_Lo 19 KHVLWSCI 26 (72)
T ss_pred hhHHHHHh
No 13
>5WLB_C 225-15 b; Ras binders, GTP Binding Protein, PROTEIN BINDING; HET: GNP, SO4, PG4; 1.72A {Homo sapiens}
Probab=27.87 E-value=1.2e+02 Score=14.66 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHH
Q FD01876784_024 6 HCYLMCRMTK 15 (60)
Q Consensus 6 H~~w~a~~~~ 15 (60)
|+||+-+.+.
T Consensus 20 haywqrlyay 29 (34)
T 5WLB_C 20 HAYWQRLYAY 29 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 14
>PF05596.15 ; Taeniidae_ag ; Taeniidae antigen
Probab=26.64 E-value=57 Score=17.42 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHHHhc
Q FD01876784_024 47 LKNNTVGISCGN 58 (60)
Q Consensus 47 l~NN~~Gr~i~~ 58 (60)
..++|+|..|+.
T Consensus 14 F~~DPlGqKia~ 25 (55)
T A0A0R3U0E2_ROD 14 FNEDPTGQTMKE 25 (55)
T ss_pred HhhChHHHHHHH
No 15
>8AP6_D subunit-d; ATP synthase, mitochondria, MEMBRANE PROTEIN; HET: PC1, ATP, PEE, AME, ADP, CDL, UTP, Q7G, MG, LMT; 3.2A {Trypanosoma brucei brucei}
Probab=26.01 E-value=79 Score=23.16 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=0.0 Template_Neff=2.000
Q ss_pred HHHHHHHH
Q FD01876784_024 3 ALRHCYLM 10 (60)
Q Consensus 3 A~RH~~w~ 10 (60)
++||++||
T Consensus 106 cLRHalWS 113 (370)
T 8AP6_D 106 CLRHALWS 113 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 16
>PF11248.12 ; DUF3046 ; Protein of unknown function (DUF3046)
Probab=20.27 E-value=2.8e+02 Score=15.33 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHH
Q FD01876784_024 4 LRHCYLMCRMTKTFGSTMADAIGKNH 29 (60)
Q Consensus 4 ~RH~~w~a~~~~~~g~~~A~~~g~aH 29 (60)
+||.-.-..|...||+..+..+..=|
T Consensus 1 Mr~SeF~~~~~~~FG~~~~~sl~~d~ 26 (62)
T F4D0F4_PSEUX/1 1 MRLSHFRELMEEEFGAVRAGSLAKDH 26 (62)
T ss_pred CCHHHHHHHHHHHHChhhHHHHHhhc