Query FD01850236_04390 hypothetical protein
Match_columns 219
No_of_seqs 111 out of 121
Neff 5.76292
Searched_HMMs 86581
Date Tue Feb 27 21:11:58 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2725045.hhr -oa3m ../results/2725045.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6PKH_A N-acetylglucosamine-1-p 99.9 4.9E-23 5.7E-28 186.2 17.5 168 3-210 125-300 (321)
2 6PKU_B N-acetylglucosamine-1-p 99.9 8.3E-21 9.6E-26 168.5 16.2 169 3-211 104-280 (300)
3 6U11_A EGF-like domain-contain 99.9 1.3E-20 1.6E-25 177.9 14.9 169 2-210 122-298 (497)
4 5H3K_A Slr0280 protein; hypoth 99.9 4.3E-20 5E-25 178.1 18.1 166 3-219 333-605 (610)
5 6OZD_A Putative exported prote 99.8 5.3E-20 6.1E-25 177.3 17.8 172 3-219 192-533 (538)
6 PF09992.13 ; NAGPA ; Phosphodi 99.8 7.9E-19 9.1E-24 145.3 16.7 166 3-219 2-189 (192)
7 3OHG_A Uncharacterized protein 99.8 1.3E-18 1.5E-23 152.8 14.5 165 2-219 93-279 (285)
8 6HPB_A mRNA interferase toxin 58.3 60 0.00069 21.2 4.8 36 169-207 1-36 (58)
9 5WAS_C Homoserine kinase; Cory 52.6 40 0.00046 23.8 3.4 27 171-199 7-33 (75)
10 PF18762.5 ; Kinase-PolyVal ; S 49.9 67 0.00078 27.6 4.9 37 147-185 77-119 (160)
11 6L7Q_A hypothetical protein; c 45.7 57 0.00066 28.4 3.7 36 154-191 50-87 (145)
12 PF04239.16 ; DUF421 ; YetF C-t 44.2 1.2E+02 0.0014 24.9 5.3 49 154-202 11-71 (134)
13 8FW5_I Schizosaccharomyces pom 44.1 18 0.00021 28.1 0.6 32 86-130 19-50 (81)
14 PF07166.15 ; DUF1398 ; Protein 35.7 1.7E+02 0.002 23.6 5.0 49 168-216 10-59 (119)
15 8BA1_B Cleavage and polyadenyl 34.2 2E+02 0.0023 23.5 5.1 33 169-206 54-86 (116)
16 PF09189.14 ; DUF1952 ; Domain 32.0 79 0.00092 23.6 2.3 17 168-184 3-19 (72)
17 3C6F_B YetF protein; UNCHARACT 31.2 2.5E+02 0.0029 23.9 5.4 49 154-202 13-73 (153)
18 PF00156.31 ; Pribosyltran ; Ph 30.4 2E+02 0.0023 22.2 4.5 36 154-189 100-135 (162)
19 PF09124.14 ; Endonuc-dimeris ; 30.1 93 0.0011 21.8 2.3 16 169-184 16-31 (54)
20 2HH8_A Hypothetical protein yd 29.3 2.5E+02 0.0029 23.9 5.1 49 168-216 22-71 (149)
21 PF20090.3 ; DUF6482 ; Family o 28.9 1.8E+02 0.0021 22.8 3.9 39 148-187 28-68 (101)
22 PF04312.17 ; DUF460 ; Protein 28.6 3.7E+02 0.0043 22.6 5.9 52 143-194 28-87 (140)
23 4J9J_A Imidazole glycerol phos 28.1 2.5E+02 0.0029 24.4 5.1 45 146-190 150-198 (246)
24 2O34_A Hypothetical protein; S 27.4 1.3E+02 0.0016 27.4 3.4 36 168-205 107-142 (250)
25 PF13299.10 ; CPSF100_C ; Cleav 27.1 2.7E+02 0.0031 24.9 5.1 34 169-206 110-143 (182)
26 1RY9_D Surface presentation of 25.4 1.1E+02 0.0013 26.4 2.4 28 174-201 22-51 (145)
27 2V78_C FRUCTOKINASE; KINASE, T 23.5 4.8E+02 0.0056 22.6 5.9 49 170-218 207-255 (313)
28 PF20212.2 ; DUF6572 ; Family o 23.4 2.5E+02 0.0029 22.3 3.8 34 148-181 11-48 (107)
29 5WEZ_A Tir chaperone; effector 23.1 2.6E+02 0.003 21.6 3.9 31 174-205 10-40 (139)
30 3C6F_B YetF protein; UNCHARACT 22.8 2E+02 0.0023 24.5 3.3 29 157-185 93-127 (153)
31 PF08002.15 ; DUF1697 ; Protein 22.5 2.6E+02 0.0031 22.6 3.9 30 157-186 4-36 (137)
32 PF03683.17 ; UPF0175 ; Unchara 22.2 1.6E+02 0.0018 21.1 2.4 21 168-190 39-59 (69)
33 8BGQ_A Thiosulfate sulfurtrans 21.9 2.3E+02 0.0027 25.4 3.8 42 149-192 88-130 (291)
34 4G6T_A Type III chaperone prot 21.2 3.2E+02 0.0037 21.0 4.1 31 174-205 13-43 (128)
35 1JYO_A SicP; Salmonella, bacte 20.9 3.2E+02 0.0037 20.9 4.0 31 174-206 8-38 (130)
36 2FM8_B Surface presentation of 20.2 1.6E+02 0.0018 23.6 2.2 32 174-205 10-43 (135)
37 2JBH_B PHOSPHORIBOSYLTRANSFERA 20.1 3.4E+02 0.0039 23.2 4.3 36 154-189 133-168 (225)
38 PF04008.18 ; Adenosine_kin ; A 20.0 5.6E+02 0.0065 22.9 5.5 44 141-184 104-152 (152)
No 1
>6PKH_A N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; uncovering enzyme, mannose 6-phosphate, glycosidase, pro-peptide, HYDROLASE; HET: MAN, BMA, FUC, NAG; 1.6A {Danio rerio}
Probab=99.91 E-value=4.9e-23 Score=186.19 Aligned_cols=168 Identities=19% Similarity=0.244 Sum_probs=124.1 Template_Neff=8.600
Q ss_pred CeeEEEcCceeccccCCCcccccCCCCCCCCCCCCcEEEeeCCeEEeCCCCCcceEEE-ecCCeeEEEecCCCC-----C
Q FD01850236_043 3 KIDICTNACWYDLSLNGKSDVFLGDDPVSANETTNQGTALLPSNKRYGNPSPLMAYVA-QKEDLTWVFGMGDIP-----D 76 (219)
Q Consensus 3 ~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~~~G~ii~~G~~i~g~~~~~~~~~~-~~~g~~~~~g~g~~P-----~ 76 (219)
++.++|||.||+ .. + ..+.|.++.+|+++..........+. ..++ .+.++..... .
T Consensus 125 ~~~~aINggfF~---------------~~-~-~~~~G~~i~dG~~~~~~~~~~~~~~~i~~~g-~~~i~~~~~~~~~~~~ 186 (321)
T 6PKH_A 125 KCLVAQNGGYFD---------------TH-T-GQCLGNIISDGKLVRNSGGIQNAQFGIRKDG-TLVFGYLSEDDILDQE 186 (321)
T ss_dssp TCSEEEECSCBC---------------TT-T-CCBCSCEEETTEEEECCSSCCCCEEEEETTS-EEEEECCCHHHHHCCS
T ss_pred CcEEEEeCcCcc---------------CC-C-CcEEEEEEECCEEEeCCCCCCCcEEEEeeCC-eEEEEEcCHHHhccCC
Confidence 456899999999 22 2 67899999999999864323334556 7888 8878775421 1
Q ss_pred CcceeeecccceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhhcCCCCCCceEEEEEcCCCc
Q FD01850236_043 77 NGFYTGIGGMCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEASRDTPGIGKIGFGITPEGK 156 (219)
Q Consensus 77 ~~~~~aiGGgp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~~~~~~~~gRTaiG~~~~g~ 156 (219)
..+..+++|+|+||+||+.+-...... ...+. .+.. ....|... .. +||+||++++++
T Consensus 187 ~~~~~av~g~~~Lv~~G~~~~~~~~~~-------~~~~~-~~~~------~~~~~~~~----~~----~RtaiG~~~dg~ 244 (321)
T 6PKH_A 187 NPFVQLISGVVWLLRKGEIYINESIQA-------ECDKT-QETG------NFRHFVDV----IS----ARTAVGHDKEGK 244 (321)
T ss_dssp SCEEEEEECSCEEEETTEECHHHHHHH-------HSCSS-THHH------HHHHHHHS----CB----CEEEEEEETTCC
T ss_pred CCeeEEEeceeEEEeCCEEEeccchhc-------ccccc-cccC------Cccccccc----cC----CeEEEEEcCCCc
Confidence 345689999999999999991000000 00000 0000 00122222 35 999999999999
Q ss_pred -EEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEccccc
Q FD01850236_043 157 -CYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNEL 210 (219)
Q Consensus 157 -~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~ 210 (219)
++++|||+... |+||.||+++|++|||.+||||||||||+|+++|+.++.|++.
T Consensus 245 l~lv~vdg~~~~~G~tl~ela~~l~~lG~~~AinLDGGgSs~l~~~g~~v~~ps~~ 300 (321)
T 6PKH_A 245 LILFHVDGQTDVRGMNLWQVAKFLKDQNVMNAINLDGGGSATYVLNGSLASYPSDH 300 (321)
T ss_dssp EEEEEECCBTTTBSBCHHHHHHHHHHTTEEEEEECCCGGGCCEEETTEECSCCCSB
T ss_pred EEEEEEeCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCceEEEECCEEeecCCCC
Confidence 99999998877 9999999999999999999999999999999999999999976
No 2
>6PKU_B N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA); uncovering enzyme, mannose 6-phosphate, glycosidase, N-acetylglucosamine, HYDROLASE; HET: NAG, NDG, M6P; 1.949A {Cavia porcellus}
Probab=99.87 E-value=8.3e-21 Score=168.49 Aligned_cols=169 Identities=17% Similarity=0.263 Sum_probs=128.3 Template_Neff=9.400
Q ss_pred CeeEEEcCceeccccCCCcccccCCCCCCCCCCCCcEEEeeCCeEEeCCCCCcceEEE-ecCCeeEEEecCCCC-----C
Q FD01850236_043 3 KIDICTNACWYDLSLNGKSDVFLGDDPVSANETTNQGTALLPSNKRYGNPSPLMAYVA-QKEDLTWVFGMGDIP-----D 76 (219)
Q Consensus 3 ~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~~~G~ii~~G~~i~g~~~~~~~~~~-~~~g~~~~~g~g~~P-----~ 76 (219)
++.++|||+||. .. + ..+.|+++.+|+.+.......+..++ .++| .+.+...... .
T Consensus 104 ~~~aaiNg~fF~---------------~~-~-~~~~G~~i~~G~~~~~~~~~~~~~~~i~~~g-~~~i~~~~~~~~~~~~ 165 (300)
T 6PKU_B 104 ACRIAQNGGFFR---------------MN-T-GECLGNVVSDGRRVSSSGGLQNAQFGIRRDG-TLVTGYLSEEEVLDTE 165 (300)
T ss_dssp TCSEEEECSCBC---------------TT-T-CCBCSCEEETTEEEECCTTCCCCEEEEETTC-CEEEECCCHHHHHCSS
T ss_pred CCEEEEeCcccc---------------CC-C-CcEEEEEEECCEEEccCCCCCCcEEEEccCC-eEEEeecCHHHccCCC
Confidence 578999999999 55 5 78899999999999875544577888 8899 8877764432 2
Q ss_pred CcceeeecccceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhhcCCCCCCceEEEEEcCCCc
Q FD01850236_043 77 NGFYTGIGGMCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEASRDTPGIGKIGFGITPEGK 156 (219)
Q Consensus 77 ~~~~~aiGGgp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~~~~~~~~gRTaiG~~~~g~ 156 (219)
..+.++++++|+||++|+......... .+... .+.. ....+... +. +|++||++++++
T Consensus 166 ~~~~~a~~~~p~lv~~G~~~~~~~~~~-------~~~~~-~~~~------~~~~~~~~----~~----~RtaiG~~~dg~ 223 (300)
T 6PKU_B 166 NPFVQLLSGVVWLIRNGSIYINESQAT-------ESDET-QETG------SFSKFVNV----MS----ARTAIGHDRDGQ 223 (300)
T ss_dssp SCEEEEEECSCEEEETTEECHHHHHHH-------SCCSS-CCSS------SHHHHHHS----CB----CEEEEEEETTSC
T ss_pred CCceeeecceEEEEECCEEecCccccc-------ccccc-cccC------Cccccccc----cc----CcEEEEECCCCC
Confidence 348889999999999999884321100 00000 0000 11223334 67 999999999999
Q ss_pred -EEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEcccccc
Q FD01850236_043 157 -CYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNELK 211 (219)
Q Consensus 157 -~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~K 211 (219)
++++++++..+ |+++.+|+++|+++||.+|++||||+|++|+++++.++.|.+..
T Consensus 224 l~lv~~~G~~~s~g~t~~ela~~l~~lG~~~A~~lDGGgSs~m~~~~~~~~~~~~~~ 280 (300)
T 6PKU_B 224 LVLFHADGQTEQRGINLWEMAEFLLRQGVVNAINLDGGGSATFVLNGTLASYPSDHC 280 (300)
T ss_dssp EEEEEECCBTTTBSBCHHHHHHHHHHTTEEEEEEECCGGGCCEEETTEECSCCCCBC
T ss_pred EEEEEEeCCCCCCCcCHHHHHHHHHHCCCCEEEECCCCCceEEEECCEEeccCCcCC
Confidence 88888877655 89999999999999999999999999999999999988886543
No 3
>6U11_A EGF-like domain-containing protein; uncovering enzyme, mannose 6-phosphate, glycosidase, N-acetylglucosamine, HYDROLASE; HET: K, FUC, NAG; 2.7A {Xenopus laevis}
Probab=99.86 E-value=1.3e-20 Score=177.89 Aligned_cols=169 Identities=16% Similarity=0.260 Sum_probs=131.2 Template_Neff=9.400
Q ss_pred CCeeEEEcCceeccccCCCcccccCCCCCCCCCCCCcEEEeeCCeEEeCCCCCcceEEE-ecCCeeEEEecCCCC-----
Q FD01850236_043 2 RKIDICTNACWYDLSLNGKSDVFLGDDPVSANETTNQGTALLPSNKRYGNPSPLMAYVA-QKEDLTWVFGMGDIP----- 75 (219)
Q Consensus 2 ~~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~~~G~ii~~G~~i~g~~~~~~~~~~-~~~g~~~~~g~g~~P----- 75 (219)
.++.+||||+||+ .. + ..+.|+++.+|+.+.......+..|. .++| ++.+......
T Consensus 122 ~~~~~aiNg~fF~---------------~~-~-~~~~G~~v~dG~~v~~~~~~~~~~~~i~~dg-~~~~~~~~~~~~~~~ 183 (497)
T 6U11_A 122 GNCFVAQNGGYFD---------------MD-T-GNCFGNIVSDGKLVQSAKGIQNAQFGIKSDG-TLIFGYLSEEQVLEA 183 (497)
T ss_dssp TCCSEEEECSCBC---------------TT-T-CCBCSCEEETTEEEECCTTCCCCEEEEETTS-EEEEECCCHHHHHCS
T ss_pred CCeEEEEcCcccc---------------CC-C-CCEeeEEEeCCeeeeCCCCCcccEEEEccCC-eEEEEEeChhHhccC
Confidence 3578999999998 55 5 68999999999999875544577787 8999 9988776543
Q ss_pred CCcceeeecccceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhhcCCCCCCceEEEEEcCCC
Q FD01850236_043 76 DNGFYTGIGGMCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEASRDTPGIGKIGFGITPEG 155 (219)
Q Consensus 76 ~~~~~~aiGGgp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~~~~~~~~gRTaiG~~~~g 155 (219)
.+.+.+++++.++|+++|+.+....... ..... .+.. ....+... .. +|++||++.++
T Consensus 184 ~~~~~~~~~g~~~lv~~G~~~~~~~~~~-------~~~~~-~~~~------~~~~~~~~----~~----~RtaiG~~~~g 241 (497)
T 6U11_A 184 ENPFVQLLSGVVWLLRNGEVYINQSKAA-------ESDKT-QTTG------DFDHFINV----IS----ARTAIGHDREG 241 (497)
T ss_dssp SSCEEEEEECSSEEEETTEECHHHHHHH-------HSCSS-SCTT------HHHHHHHS----CB----CEEEEEECTTS
T ss_pred CCcceEEeeceeeeeeCcEEEecCCccc-------cCCcc-cccc------cccceeee----cc----CceeeEECCCC
Confidence 4458889999999999999874322110 00000 0001 12334444 67 89999999999
Q ss_pred c-EEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEccccc
Q FD01850236_043 156 K-CYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNEL 210 (219)
Q Consensus 156 ~-~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~ 210 (219)
+ ++++++++... |+++.+++++|+++||.+||+||||+|++|+++++.++.|.+.
T Consensus 242 ~~~l~~vdg~~~~~g~t~~ela~~l~~~G~~~ai~LDGGgSs~l~~~g~~~~~psd~ 298 (497)
T 6U11_A 242 RLIIFHVDGQTDDRGLNLWELANFLKDQGVINAINLDGGGSATLVINGTLANYPSDH 298 (497)
T ss_dssp CEEEEEECCBTTTBSBCHHHHHHHHHHTTCSEEEEECCGGGCCEEETTEECSCCCSB
T ss_pred CEEEEEECCCCCCCCccHHHHHHHHHHcCCcEEEEcCCCCccceeecCcccCCCCCC
Confidence 9 99999887766 9999999999999999999999999999999999988888653
No 4
>5H3K_A Slr0280 protein; hypothetical protein, Synechocystis, UNKNOWN FUNCTION; 1.702A {Synechocystis sp. (strain PCC 6803 / Kazusa)}
Probab=99.85 E-value=4.3e-20 Score=178.06 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CeeEEEcCceeccccCCCcccccCCCCCCCCCCCCcEEEeeCCeEEeCCCCCcceEEE-ecCCeeEEEec----------
Q FD01850236_043 3 KIDICTNACWYDLSLNGKSDVFLGDDPVSANETTNQGTALLPSNKRYGNPSPLMAYVA-QKEDLTWVFGM---------- 71 (219)
Q Consensus 3 ~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~~~G~ii~~G~~i~g~~~~~~~~~~-~~~g~~~~~g~---------- 71 (219)
+..++|||.||+ .. + ..|.|.++.+|+++....... ..+. ..++ .+.++.
T Consensus 333 ~a~a~INg~fF~---------------~~-~-~~p~g~~v~~G~~~~~~~~~~-~~l~~~~~g-~~~~~~~~~~~~~~~~ 393 (610)
T 5H3K_A 333 RAAVAINAGFFN---------------RN-N-QLPLGAVWSQQNWRSGPILNR-GAIAWNDQG-QTTFGRLSLSEIITTG 393 (610)
T ss_dssp TCSEEEECCCEE---------------TT-T-TEECSCEEETTEEEECCCTTC-EEEEECTTS-CEEEEECEEEEEEEET
T ss_pred CcEEEEeCceec---------------CC-C-CcceeEEEECCEEEECCCCCC-cEEEEcCCC-CEEEEEEEEEEEEEeC
Q ss_pred ------------------------------------------------------------CCCCCCc-------------
Q FD01850236_043 72 ------------------------------------------------------------GDIPDNG------------- 78 (219)
Q Consensus 72 ------------------------------------------------------------g~~P~~~------------- 78 (219)
...|.+.
T Consensus 394 ~g~~~~i~~~N~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~ 473 (610)
T 5H3K_A 394 SGQRLTANYLNSGYVQRGIARYTPAWGPSYIPLSDNEQVYVVQNSQVTAQYPLPKAGQQQMPIPSDGYLIIDRGNQIPAG 473 (610)
T ss_dssp TSCEEEECEESCSCCCSEEEEECGGGCSEECCSSSSEEEEEEETTEEEEEEEECSSSCCCEECCTTEEEEEEESSCSCTT
T ss_pred CCcEEEeeecccCCCCCcEEEECCCCCCccCCCCCCeEEEEEECCEEEEEEcCCCCCCCccccCCCeEEEEECCCCcchh
Q ss_pred ---------------------ceeeecccceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhh
Q FD01850236_043 79 ---------------------FYTGIGGMCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEA 137 (219)
Q Consensus 79 ---------------------~~~aiGGgp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~ 137 (219)
+..++||+|.||+||+++ . .... +.+...+... +
T Consensus 474 ~~~~g~~v~i~~~~~~~~~~~~~~av~ggp~lv~~G~~~------------~-~~~~----------~~~~~~~~~~-~- 528 (610)
T 5H3K_A 474 VLAVGTTLNVNGRSTPEAFNAFPNGMGAGPLLIDQGRMV------------L-NATG----------EGFSSAFQQQ-R- 528 (610)
T ss_dssp TTCTTCBEEEEEEEESGGGGGCSEEEECSCEEEETTEEC------------C-CTTT----------TTCCHHHHHC-C-
T ss_pred cCCCCCEEEEEEecChhHhchhceeEeccceEEeCCEEe------------c-CCCc----------CCCCchhhcc-c-
Q ss_pred cCCCCCCceEEEEEcCCCc-EEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEccccccCccc
Q FD01850236_043 138 SRDTPGIGKIGFGITPEGK-CYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNELKELTM 215 (219)
Q Consensus 138 ~~~~~~~gRTaiG~~~~g~-~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~K~~~~ 215 (219)
+ +||+||++.+++ +++++||++.. |||+.|++++|+++||++||||||||||+|+++|+.++.|++ ..+.+
T Consensus 529 --~----~Rt~ig~~~dg~~~l~~~dg~~~s~G~t~~ela~~l~~~G~~~A~~LDGGgSs~l~~~g~~~n~p~~-~~r~v 601 (610)
T 5H3K_A 529 --A----SRSAIAVDRNGNIILVASHNRVGGAGASLGEFAQILQQLGAVNALNLDGGSSTSLALGGQLLDRSPV-TAARV 601 (610)
T ss_dssp --B----CEEEEEECTTSCEEEEEECCCTTSCCBCHHHHHHHHHHTTCSEEEEECCGGGCCEEETTEESSSCGG-GCCEE
T ss_pred --c----CeEEEEECCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHCCCCceEeCCCCCceEEEECCEEecCCCC-Ccccc
Q ss_pred ccCC
Q FD01850236_043 216 TFGV 219 (219)
Q Consensus 216 ~~Gi 219 (219)
+.+|
T Consensus 602 ~n~i 605 (610)
T 5H3K_A 602 SNAI 605 (610)
T ss_dssp SEEE
T ss_pred cEEE
No 5
>6OZD_A Putative exported protein; SSGCID, Seattle Structural Genomics Center for Infectious Disease, Burkholderia pseudomallei, Putative exported protein, STRUCTURAL GENOMICS; HET: EDO; 1.55A {Burkholderia pseudomallei (strain K96243)}
Probab=99.85 E-value=5.3e-20 Score=177.34 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CeeEEEcCceeccccCCCcccccCCCCCCCC---CCCCcEEEeeCCeEEeCCCCCcceEEEe-c-CCee---EEEec---
Q FD01850236_043 3 KIDICTNACWYDLSLNGKSDVFLGDDPVSAN---ETTNQGTALLPSNKRYGNPSPLMAYVAQ-K-EDLT---WVFGM--- 71 (219)
Q Consensus 3 ~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~---~~~~~G~ii~~G~~i~g~~~~~~~~~~~-~-~g~~---~~~g~--- 71 (219)
+..++|||.||+ ..+.... ...+.|.++.+|+++.........+.-. . ++ . ..++.
T Consensus 192 ~avaaINg~fF~------------~~~~~~~~~~~g~p~G~~v~dG~l~s~~~~~r~~l~i~~~~~g-~~~~~~i~~~~~ 258 (538)
T 6OZD_A 192 NALAGVNGGFFT------------NINPFGAPLPPRSPVGATVVDGRLVAAAIGRRPGLLLARDANG-RQRATVVRNLAT 258 (538)
T ss_dssp TCSEEEECSCBC------------CCCTTCCSSCCBCBCSSEEETTEEEECCCSSEEEEEEEECTTS-CEEEEEEEEEEE
T ss_pred CcEEEEcccccc------------cCCCCCCCCCCCCCeeEEEECCEEEecCCCCccEEEEEeCCCC-CeeeEEEEEEEE
Q ss_pred -------------------------------------------------------------CCC---CC-----------
Q FD01850236_043 72 -------------------------------------------------------------GDI---PD----------- 76 (219)
Q Consensus 72 -------------------------------------------------------------g~~---P~----------- 76 (219)
+.. ..
T Consensus 259 ~~~i~~~~g~~~~i~~iN~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~g~~~~~t~~~~~~~~~~~~ 338 (538)
T 6OZD_A 259 AITLTDAQGRAIAVQTLNRPILGTVVNCGAQARTPTSEPAQDTVCTNYDDLVMYDSLYLRGGASNTLVDAGYQGARYELV 338 (538)
T ss_dssp EEEEEETTCCEEEECEESCSSBTEEEEESTTCCBSCSSEEEEEEEECTTCEEEECTTBGGGTCCCCCBCTTCCSCEEEEE
T ss_pred EEEEEeCCCCEEEceeeecCCCCceecCCCCCCCCCCCCCcccccCCCCeEEEecHHHhccCccccccCCccCCCeEEEE
Q ss_pred ------------------------------------------------------------CcceeeecccceEEECCEEe
Q FD01850236_043 77 ------------------------------------------------------------NGFYTGIGGMCPLIINGLKY 96 (219)
Q Consensus 77 ------------------------------------------------------------~~~~~aiGGgp~LI~nG~~~ 96 (219)
.....+|+|+|+||+| +..
T Consensus 339 i~~~g~V~~i~~~~g~~ip~~~~vl~~~g~~~~~l~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~av~ggp~Lv~~-~~~ 417 (538)
T 6OZD_A 339 VDANGAVVAGHATLGAPPPPNGYVLQGLGASAAWLQAHATPGTRLAVSRRLSADGADLALASGTSLVEAGPTLSVP-NLA 417 (538)
T ss_dssp ECTTSBEEEEESSCCCCCCTTCEEEEEEHHHHHHHHTTCSTTCBEEEEEEEEETTEECCCCTTCEEEECCCBCSCS-SHH
T ss_pred EcCCCeEEEeecCCCCCCCCCcEEEEEechHHHHHHHhCCCCCEEEEEEEEcCCCceeecccccEEEecCceeeeC-ccc
Q ss_pred CCCccccccccCCCCCCCCchhhhhhHHHhcchh-------------------hHHHHhhcCCCCCCceEEEEEcCCCc-
Q FD01850236_043 97 GDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNK-------------------YVALLEASRDTPGIGKIGFGITPEGK- 156 (219)
Q Consensus 97 G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~-------------------f~~~~~~~~~~~~~gRTaiG~~~~g~- 156 (219)
. .... +..... |... + + +||+||++++++
T Consensus 418 ------------~-~~~~----------eg~~~~~~~~~~~~~~~~~~~~~~~~~~~-r---~----pRTavG~~~dG~l 466 (538)
T 6OZD_A 418 ------------Q-SAAQ----------EGFAPTVGGVDAGEGAAANGNWYNGWYVA-R---N----GRTAAGVAADGTI 466 (538)
T ss_dssp ------------H-HHHH----------TTCCSBCTTSCC---CCBCHHHHCCCCCS-C---B----CEEEEEEETTCCE
T ss_pred ------------C-Chhh----------cCCCCCCCCccccCcccccCCcccCcccc-c---C----CcEEEEEcCCCcE
Q ss_pred EEEEEeccCCC---CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEccccc-cCcccccCC
Q FD01850236_043 157 CYVAVQAHQNP---GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNEL-KELTMTFGV 219 (219)
Q Consensus 157 ~~vvV~g~~~~---Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~-K~~~~~~Gi 219 (219)
++|+||||+.. |||+.|++++|++|||++||||||||||+|+++++.++.|++. .+|.++.+|
T Consensus 467 ~lv~vdGr~~~~s~G~tl~Ela~~l~~lG~~~AinLDGGGSt~m~~~g~~vn~psd~~~eR~V~~ai 533 (538)
T 6OZD_A 467 LLVEIDGRQPTLSVGTSIPETAAVMAWLGATSAVNLDGGGSSNMVVGGKMVGHPSDAVGERGVGDTL 533 (538)
T ss_dssp EEEEECCSBTTTBCCBCHHHHHHHHHHHTEEEEEECCCGGGCCEEETTEECSCCCSTTCSCCBSCEE
T ss_pred EEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCceeEEECCEEeecCcCCCCccccccEE
No 6
>PF09992.13 ; NAGPA ; Phosphodiester glycosidase
Probab=99.83 E-value=7.9e-19 Score=145.29 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CeeEEEcCceeccccCCCcccccCCCCCCCCCCC-CcEEEeeCCeEEe---CCCCCcceEEE-e----cCCeeEEE--ec
Q FD01850236_043 3 KIDICTNACWYDLSLNGKSDVFLGDDPVSANETT-NQGTALLPSNKRY---GNPSPLMAYVA-Q----KEDLTWVF--GM 71 (219)
Q Consensus 3 ~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~-~~G~ii~~G~~i~---g~~~~~~~~~~-~----~~g~~~~~--g~ 71 (219)
+..++||+.||+ .... +.|.++.+|+++. .........+. . +++ .+.+ ..
T Consensus 2 ~~~~~iNg~~f~------------------~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 62 (192)
T A9V9Y5_MONBE/1 2 TCEYATNAGFFD------------------FTPPACEGNLITDGVSIQHPCPNQVNFGRKLGMTCPDSTQG-DRIVIGYM 62 (192)
T ss_pred CceEEEeccccc------------------CCCCCeeeEEEECCEEEeCCCCCCCCCCcEEEEecCCCCCC-eEEEEecC
Q ss_pred CCCCCCcceee-ecccceEEECCE-EeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhhcCCCCCCceEEE
Q FD01850236_043 72 GDIPDNGFYTG-IGGMCPLIINGL-KYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEASRDTPGIGKIGF 149 (219)
Q Consensus 72 g~~P~~~~~~a-iGGgp~LI~nG~-~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~~~~~~~~gRTai 149 (219)
..........+ ++++ +||+||+ +. . ...+ ......+... . . +|++|
T Consensus 63 ~~~~~~~~~~~~~~~g-~li~~G~~~~------------~-~~~~----------~~~~~~~~~~-~---~----~Rt~i 110 (192)
T A9V9Y5_MONBE/1 63 QEADIADLTELITGRG-WLIRHGQAYT------------N-QSRE----------FTPTDSFVSE-K---A----PRTAL 110 (192)
T ss_pred CccccccCeEEEEece-EEEECCEecC------------C-CCCC----------CCCCCccccc-c---C----CeEEE
Q ss_pred EEcCCCc-EEEEEeccCCC--CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEcccccc------CcccccCC
Q FD01850236_043 150 GITPEGK-CYVAVQAHQNP--GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNELK------ELTMTFGV 219 (219)
Q Consensus 150 G~~~~g~-~~vvV~g~~~~--Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~K------~~~~~~Gi 219 (219)
|++++++ +++++|++... |+|+.||+++|+++||.+||+||||+|+.|++.+...+.|...+ .+.++..|
T Consensus 111 g~~~~g~~~~~~~~g~~~~~~g~tl~~~a~~l~~~g~~~Ai~lDGG~Ss~l~~~~~~~~~~~~~~~~~~~~~r~v~~~i 189 (192)
T A9V9Y5_MONBE/1 111 GLTKDGAILSLVVDGIEEELVGPDLHEMASLLLELDVVQAINLDGGGSSTAVYQGHVFNMPHCLDTTEPICERNVTSVV 189 (192)
T ss_pred EEcCCCeEEEEEEeCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCCceEEEEcCcccccccCCCCCCCccceeeceEE
No 7
>3OHG_A Uncharacterized protein from DUF2233 family; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY; HET: MSE, SO4, EDO; 1.8A {Bacteroides ovatus}
Probab=99.80 E-value=1.3e-18 Score=152.79 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCeeEEEcCceeccccCCCcccccCCCCCCCCCCCCcEEEeeCCeEEeCCCCC-cceEEE-ecCCeeEEEecCCCCC---
Q FD01850236_043 2 RKIDICTNACWYDLSLNGKSDVFLGDDPVSANETTNQGTALLPSNKRYGNPSP-LMAYVA-QKEDLTWVFGMGDIPD--- 76 (219)
Q Consensus 2 ~~~~~~iNg~~fd~~~~~~~~~~~~~~pv~~~~~~~~G~ii~~G~~i~g~~~~-~~~~~~-~~~g~~~~~g~g~~P~--- 76 (219)
.+..++|||.||+ .. + ..+.|.++.+|+++...... ....+. ..++ .+.+.......
T Consensus 93 ~~~~~aiNg~ff~---------------~~-~-~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~g-~~~i~~~~~~~~~~ 154 (285)
T 3OHG_A 93 KTVWLGVNGDYYA---------------DN-P-RRVMGLFYKDGVCINSQYFEGHDEVLYQLKNG-ETYVGQADEALAHE 154 (285)
T ss_dssp CCEEEEEECCCEE---------------TT-T-TEESSCEEETTEEEECCCCTTCCEEEEEETTS-CEEEEEHHHHHTTG
T ss_pred CeEEEEEEcCCCC---------------CC-C-CeeeceEEECCEEeeCCCCCCCCeEEEEeCCC-cEEEEchHHhhhhH
Q ss_pred CcceeeecccceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchhhHHHHhhcCCCCCCceEEEEEcCCC-
Q FD01850236_043 77 NGFYTGIGGMCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNKYVALLEASRDTPGIGKIGFGITPEG- 155 (219)
Q Consensus 77 ~~~~~aiGGgp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~f~~~~~~~~~~~~~gRTaiG~~~~g- 155 (219)
..+..+++++|+||.+|+.. ...... ..... + . +|++||+++++
T Consensus 155 ~~~~~a~~~~p~lv~~G~~~------------~~~~~~---------------~~~~~-~---~----~Rt~ig~~~dg~ 199 (285)
T 3OHG_A 155 ANLLHALGGYGLLVKDGVVQ------------NFYEEM---------------GDLQN-T---H----PRTSVGLSQDRK 199 (285)
T ss_dssp GGEEEEEEESCEEEETTEEC------------CCCTTS---------------GGGGS-S---B----CEEEEEECTTSS
T ss_pred HhhcHhhccceEEEECCEEc------------cccccc---------------CcccC-C---C----CeEEEEEeCCCC
Q ss_pred c-EEEEEeccCC----C-CccHHHHHHHHHHcCCCeeEecCCCCceEEEECC---------EEEEcccccc-CcccccCC
Q FD01850236_043 156 K-CYVAVQAHQN----P-GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDG---------DFVVKSNELK-ELTMTFGV 219 (219)
Q Consensus 156 ~-~~vvV~g~~~----~-Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g---------~~~~~P~~~K-~~~~~~Gi 219 (219)
. +++++||++. . |+|+.||+++|++|||++||+||||+|++|++++ +.++.|.+.. .+.++..|
T Consensus 200 ~l~l~~~~g~~~~~~~~~g~t~~ela~~l~~lG~~~Ai~LDGGgSs~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~i 279 (285)
T 3OHG_A 200 TMYVFVVDGRRKDSFFALGLTLPHLATMMKAVGCYNAINLDGGGSTTLIIRKVNDGGKPTFPILNTPADDRVPRKVTNSM 279 (285)
T ss_dssp EEEEEEECCSCCSTTCCCCBCHHHHHHHHHHHTCSEEEECCCGGGCCEEECEECTTSCEECCBCSCCTTTTCCCCBSEEE
T ss_pred EEEEEEEeCCCCCccccCCCCHHHHHHHHHHcCCCEEEeCCCCCeeEEEEEecCCCCCceecEEeCCCCCCCcccceeEE
No 8
>6HPB_A mRNA interferase toxin HicA; toxin-antitoxin, TA, protein complex, DNA-binding, TA complex, TOXIN; HET: MSE, SO4; 2.28A {Escherichia coli str. K-12 substr. MG1655}
Probab=58.27 E-value=60 Score=21.15 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEcc
Q FD01850236_043 169 MTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKS 207 (219)
Q Consensus 169 mtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P 207 (219)
|+..|+...|.++||.- . -+|....+..++..+..|
T Consensus 1 ~~~~~~~~~l~~~G~~~-~--~~g~H~~~~~~~~~~~v~ 36 (58)
T 6HPB_A 1 MKQSEFRRWLESQGVDV-A--NGSNHLKLRFHGRRSVMP 36 (58)
T ss_dssp -CHHHHHHHHHHTTCEE-E--CCSSSEEEEETTEEEEEC
T ss_pred CCHHHHHHHHHHCCeEE-E--cCCCeEEEEECCeEEecc
No 9
>5WAS_C Homoserine kinase; Corynebacterium glutamicum, Homoserine Kinase, L-threonine, L-homoserine, Magnesium, TRANSFERASE; 1.799A {Corynebacterium glutamicum}
Probab=52.56 E-value=40 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHcCCCeeEecCCCCceEEEE
Q FD01850236_043 171 FDDFRDIFINFGCNNAVSGDGSDSVFMFR 199 (219)
Q Consensus 171 l~elrd~l~~lGc~~Av~lDGg~SstL~~ 199 (219)
+.++++.+...| -+..+.|+|++.+..
T Consensus 7 ~~~~~~~~~~~g--~~~~lsGsGpt~~~~ 33 (75)
T 5WAS_C 7 TSEWVNRLRNRG--YAAYLSGAGPTAMVL 33 (75)
T ss_dssp CCHHHHHHHTTT--CEEEECTTSSCEEEE
T ss_pred hHHHHHHHHHCC--CCEEEeCCCCeEEEE
No 10
>PF18762.5 ; Kinase-PolyVal ; Serine/Threonine/Tyrosine Kinase found in polyvalent proteins
Probab=49.88 E-value=67 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred EEEEE-cCCCcEEEEEeccCCC--C---ccHHHHHHHHHHcCCCe
Q FD01850236_043 147 IGFGI-TPEGKCYVAVQAHQNP--G---MTFDDFRDIFINFGCNN 185 (219)
Q Consensus 147 TaiG~-~~~g~~~vvV~g~~~~--G---mtl~elrd~l~~lGc~~ 185 (219)
..+|+ ..++.+.+|+ .|+. | .|..||.+.|.++|+..
T Consensus 77 ~~~G~~~~~~~~~iv~--sQp~i~g~~~~t~~eI~~~m~~~Gf~~ 119 (160)
T A0A095SVY7_9FL 77 TLVGFCLVDEILFALV--EQPFVKANQPTDLSKVKEFMIANGFEN 119 (160)
T ss_pred EEEEEEEeCCeEEEEE--EcCcccCCCCCCHHHHHHHHHHCCCEE
No 11
>6L7Q_A hypothetical protein; cytosolic protein, unknown function, hypothetical protein; 1.16A {Pyrococcus yayanosii (strain CH1 / JCM 16557)}
Probab=45.68 E-value=57 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=0.0 Template_Neff=2.700
Q ss_pred CCc-EEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCC
Q FD01850236_043 154 EGK-CYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDG 191 (219)
Q Consensus 154 ~g~-~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDG 191 (219)
||+ -||++ +-+. .+|+.|+.+....++....|++||
T Consensus 50 DGrksLVc~--kL~~e~Ls~eEi~~~V~~i~~YeCVf~d~ 87 (145)
T 6L7Q_A 50 DGRKTLVCV--PLDCERLSRGEILEKVRGVGVYECIFPEG 87 (145)
T ss_dssp CSSEEEEEE--ECCCEEEEHHHHHHHTTTCCCEEEEEGGG
T ss_pred CCCceEEEE--eccccccCHHHHHHHhcCCCceEEEcccC
No 12
>PF04239.16 ; DUF421 ; YetF C-terminal domain
Probab=44.18 E-value=1.2e+02 Score=24.93 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCc-EEEEEeccCCC------CccHHHHHHHHHHcCC-----CeeEecCCCCceEEEECCE
Q FD01850236_043 154 EGK-CYVAVQAHQNP------GMTFDDFRDIFINFGC-----NNAVSGDGSDSVFMFRDGD 202 (219)
Q Consensus 154 ~g~-~~vvV~g~~~~------Gmtl~elrd~l~~lGc-----~~Av~lDGg~SstL~~~g~ 202 (219)
++. ++||.||+-.. ++|..+|...|.+.|+ ...+.++-.|.-++.....
T Consensus 11 ~g~p~~lI~dG~i~~~~L~~~~~~~~~L~~~Lr~~g~~~i~dV~~a~le~~G~lsi~~k~~ 71 (134)
T I0JL56_HALH3/8 11 DGTSTVLIKDGKVLEGNLKKEKYTLDELLQLLRGKNIFELAEVEYAVLEADGKLSVLPKKD 71 (134)
T ss_pred cCCeEEEEECCEECHHHHHhcCCCHHHHHHHHHhCCCCCHHHHceeEEcCCCCEEEEeCcc
No 13
>8FW5_I Schizosaccharomyces pombe LAM4, Human LAMTOR5 ortholog; mTOR complex 1 (mTORC1), Rag GTPase, Gtr GTPase, LAMTOR, GATOR1, nutrient sensing, SIGNALING PROTEIN; HET: GDP;{Homo sapiens}
Probab=44.11 E-value=18 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred cceEEECCEEeCCCccccccccCCCCCCCCchhhhhhHHHhcchh
Q FD01850236_043 86 MCPLIINGLKYGDGNKYSKVIDGSNIVGEPREQDREFLIQRNNNK 130 (219)
Q Consensus 86 gp~LI~nG~~~G~~N~y~~~~~~~~~~~~p~~~~~~~l~qr~~~~ 130 (219)
|..|++||+++ + ..|.-.+|+++|..+.+++.
T Consensus 19 Gavl~rNGL~i------------A-vaG~i~~EE~r~iCEW~~~~ 50 (81)
T 8FW5_I 19 GAMLVRNGLPI------------A-TAGDVNAEEQRVICEWNSNA 50 (81)
T ss_dssp EEEEEESSSEE------------E-EEECCCSSSSHHHHSCCCSS
T ss_pred ceeEEeCCeee------------E-eeecCCHHHhceEEEecCCC
No 14
>PF07166.15 ; DUF1398 ; Protein of unknown function (DUF1398)
Probab=35.66 E-value=1.7e+02 Score=23.62 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CccHHHHHHHHHHcCCCeeEecCCCCceEEE-ECCEEEEccccccCcccc
Q FD01850236_043 168 GMTFDDFRDIFINFGCNNAVSGDGSDSVFMF-RDGDFVVKSNELKELTMT 216 (219)
Q Consensus 168 Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~-~~g~~~~~P~~~K~~~~~ 216 (219)
++++.++.+.|+++|+.+-.-.=-.++++.+ .+|..+..|.......+.
T Consensus 10 ~~~FP~~~~~L~~~GV~~Y~~~~~~~~~~y~~~~g~~~~~~~~~~~~~v~ 59 (119)
T H8XP84_FLAIG/8 10 GADFPAYIQEIKQMGVTHYEAYVTDGHTDYHGGSDFMVTVPAKYEPLVIA 59 (119)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEeCCCEEEEcCCCcEEEcCCCCCCceec
No 15
>8BA1_B Cleavage and polyadenylation specificity factor subunit 2; Cleavage and polyadenylation specificity factor, RNA BINDING PROTEIN; NMR {Encephalitozoon cuniculi}
Probab=34.20 E-value=2e+02 Score=23.46 Aligned_cols=33 Identities=3% Similarity=0.137 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred ccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEc
Q FD01850236_043 169 MTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVK 206 (219)
Q Consensus 169 mtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~ 206 (219)
..|.||+..|.+.|+.--+. +| +|++++.+..+
T Consensus 54 ~kLs~lk~~L~~~g~~aef~-~G----~Lv~~~~v~i~ 86 (116)
T 8BA1_B 54 ADINEMRRMIVEGSMRVEQE-EN----GLLVEDCVWIR 86 (116)
T ss_pred cCHHHHHHHHHhCCCcEEEe-CC----eEEECCEEEEE
No 16
>PF09189.14 ; DUF1952 ; Domain of unknown function (DUF1952)
Probab=31.95 E-value=79 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CccHHHHHHHHHHcCCC
Q FD01850236_043 168 GMTFDDFRDIFINFGCN 184 (219)
Q Consensus 168 Gmtl~elrd~l~~lGc~ 184 (219)
|++..+|+++|.++|..
T Consensus 3 Gi~~~~l~~Yl~elGg~ 19 (72)
T E4U9C5_OCEP5/1 3 GVSPWLLADYLRRWGAV 19 (72)
T ss_pred CCCHHHHHHHHHHCCCc
No 17
>3C6F_B YetF protein; UNCHARACTERIZED PROTEIN, PREDICTED MEMBRANE PROTEIN, PROTEIN STRUCTURE INITIATIVE, PSI-2, New York SGX Research Center for Structural; 2.5A {Bacillus subtilis}
Probab=31.22 E-value=2.5e+02 Score=23.86 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCc-EEEEEeccCCC------CccHHHHHHHHHHcCCCe-----eEecCCCCceEEEECCE
Q FD01850236_043 154 EGK-CYVAVQAHQNP------GMTFDDFRDIFINFGCNN-----AVSGDGSDSVFMFRDGD 202 (219)
Q Consensus 154 ~g~-~~vvV~g~~~~------Gmtl~elrd~l~~lGc~~-----Av~lDGg~SstL~~~g~ 202 (219)
.|. .+|+.||+-.. .+|+.+|...|...||.+ ..-|.-.|+-++.....
T Consensus 13 ~g~p~~li~~G~i~~~~l~k~~~~~~dl~~~lR~~g~~~l~~v~~ailE~nG~lsv~~~~~ 73 (153)
T 3C6F_B 13 EGEPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSD 73 (153)
T ss_dssp ---CEEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEECGG
T ss_pred cCCcEEEEECCEECHHHHHHcCCCHHHHHHHHHHCCCCCHHHheEEEEecCCcEEEEeccc
No 18
>PF00156.31 ; Pribosyltran ; Phosphoribosyl transferase domain
Probab=30.43 E-value=2e+02 Score=22.15 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred CCcEEEEEeccCCCCccHHHHHHHHHHcCCCeeEec
Q FD01850236_043 154 EGKCYVAVQAHQNPGMTFDDFRDIFINFGCNNAVSG 189 (219)
Q Consensus 154 ~g~~~vvV~g~~~~Gmtl~elrd~l~~lGc~~Av~l 189 (219)
.++-+++||..-..|.|+.++++.|.+.|+.....+
T Consensus 100 ~~~~vlivDD~~~tG~t~~~~~~~l~~~~~~~~~~~ 135 (162)
T A7E5A9_SCLS1/5 100 IGKKCVIIDDAVSSGTTLKTTWDLLERIGCEIVGCG 135 (162)
T ss_pred CCCEEEEEEccCCCCHHHHHHHHHHHHcCCeEEEEE
No 19
>PF09124.14 ; Endonuc-dimeris ; T4 recombination endonuclease VII, dimerisation
Probab=30.05 E-value=93 Score=21.84 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred ccHHHHHHHHHHcCCC
Q FD01850236_043 169 MTFDDFRDIFINFGCN 184 (219)
Q Consensus 169 mtl~elrd~l~~lGc~ 184 (219)
||+.||+..|.++|+.
T Consensus 16 ~t~~eLk~~l~e~gi~ 31 (54)
T Q6WI21_BPKVM/8 16 LKLQEQKEHLDSLGIK 31 (54)
T ss_pred CCHHHHHHHHHHcCCC
No 20
>2HH8_A Hypothetical protein ydfO; ER251, AutoStructure, NESG, PSI-2, Northeast Structural Genomics Consortium, Protein Structure Initiative, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=29.26 E-value=2.5e+02 Score=23.93 Aligned_cols=49 Identities=6% Similarity=0.132 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CccHHHHHHHHHHcCCCeeEecCCCCceEEE-ECCEEEEccccccCcccc
Q FD01850236_043 168 GMTFDDFRDIFINFGCNNAVSGDGSDSVFMF-RDGDFVVKSNELKELTMT 216 (219)
Q Consensus 168 Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~-~~g~~~~~P~~~K~~~~~ 216 (219)
++++.++.+.|+++|+..-.-.=-.|.++.+ .+|..+..|.......+.
T Consensus 22 ~~~Fp~~v~~L~~~GV~~Y~v~v~~g~~~y~~~~g~~~~~~~~~~~~~va 71 (149)
T 2HH8_A 22 DLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVK 71 (149)
T ss_dssp HCCCHHHHHHHHHHCSSEEEEETTTTEEEEECSSSCEEEEECSTTCCCCC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEcCCCEEEEeCCCcEEEecccccccccc
No 21
>PF20090.3 ; DUF6482 ; Family of unknown function (DUF6482)
Probab=28.91 E-value=1.8e+02 Score=22.75 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred EEEEcCCCcEEEEEeccCCC--CccHHHHHHHHHHcCCCeeE
Q FD01850236_043 148 GFGITPEGKCYVAVQAHQNP--GMTFDDFRDIFINFGCNNAV 187 (219)
Q Consensus 148 aiG~~~~g~~~vvV~g~~~~--Gmtl~elrd~l~~lGc~~Av 187 (219)
.+.+..++...++.|. ... =-|+.++++.|.++|+..|.
T Consensus 28 ~v~v~~~g~~~~l~d~-g~~~~f~Sl~~a~~~L~~~g~~~~~ 68 (101)
T A0A437Q8N7_9GA 28 QVTVEIEGKERLLYED-EKPLRFHNMIQIKELMETLKVESYV 68 (101)
T ss_pred EEEEEECCEEEEEEeC-CEEEEeCCHHHHHHHHccCCceEEE
No 22
>PF04312.17 ; DUF460 ; Protein of unknown function (DUF460)
Probab=28.56 E-value=3.7e+02 Score=22.62 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCceEEEEEcCCCc--EEEEE-eccCCC-----CccHHHHHHHHHHcCCCeeEecCCCCc
Q FD01850236_043 143 GIGKIGFGITPEGK--CYVAV-QAHQNP-----GMTFDDFRDIFINFGCNNAVSGDGSDS 194 (219)
Q Consensus 143 ~~gRTaiG~~~~g~--~~vvV-~g~~~~-----Gmtl~elrd~l~~lGc~~Av~lDGg~S 194 (219)
.....+|||++..+ +.++. ||.--. -.++.++.+.+.+++..-.+.-||.++
T Consensus 28 ~~~~liiGIDPG~k~GvAv~~~~g~ll~~~~~~~~~~~~~i~~i~~~~~~~vi~~dG~~~ 87 (140)
T A8ACB6_IGNH4/2 28 TKELLVVGIDPGIKTGLAILNVEGEVLFLGSFKNADRGELVSLINKFGLPIIIATDTSPP 87 (140)
T ss_pred ccceEEEEEcCCCcEEEEEEeCCCcEEEEEEEecCCHHHHHHHHHHhCCCEEEEecCCCC
No 23
>4J9J_A Imidazole glycerol phosphate synthase subunit HisF; beta barrel, protein engineering, LYASE; 2.3A {Thermotoga maritima}
Probab=28.07 E-value=2.5e+02 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eEEEEE-cCC--CcEEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecC
Q FD01850236_043 146 KIGFGI-TPE--GKCYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGD 190 (219)
Q Consensus 146 RTaiG~-~~~--g~~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lD 190 (219)
+.++++ .++ +++.++.++.... ++++.++.+.+.++||...+..|
T Consensus 150 ~i~~~ld~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~ 198 (246)
T 4J9J_A 150 AVVVAIVAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTS 198 (246)
T ss_dssp GEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred cEEEEEEEEEeCCEEEEEEcCCceecCCCHHHHHHHHHHcCCcEEEEEE
No 24
>2O34_A Hypothetical protein; STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, PSI, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP: d.96.2.2, l.1.1.1
Probab=27.37 E-value=1.3e+02 Score=27.40 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEE
Q FD01850236_043 168 GMTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVV 205 (219)
Q Consensus 168 Gmtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~ 205 (219)
|.-++.+++.|++ |+.++ .++.||+..+.-...|.+
T Consensus 107 G~a~d~~~~~L~~-g~~~~-lV~~GGdi~~~g~~~w~v 142 (250)
T 2O34_A 107 GTIAQMVAERFVD-VSPEL-IVENGGDLYLYSERDRVV 142 (250)
T ss_dssp HHHHHHHHHHHGG-GCSSE-EEEETTEEEEECSBCEEE
T ss_pred HHHHHHHHHHHhc-cCCeE-EEECCCCEEEEcCCcEEE
No 25
>PF13299.10 ; CPSF100_C ; Cleavage and polyadenylation factor 2 C-terminal
Probab=27.13 E-value=2.7e+02 Score=24.89 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred ccHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEc
Q FD01850236_043 169 MTFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVK 206 (219)
Q Consensus 169 mtl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~ 206 (219)
+.|.+||..|.+.|+.--+.-+| +|++++.+.++
T Consensus 110 lrLs~Lr~~L~~~G~~aEF~geG----~Lv~~~~v~vr 143 (182)
T F0XFZ6_GROCL/8 110 LQLTNLRRAMQNAGHTAEFRGEG----TLVIDGSVAVR 143 (182)
T ss_pred ccHHHHHHHHHHCCCCEEEeccc----EEEECCEEEEE
No 26
>1RY9_D Surface presentation of antigens protein spaK; alpha/beta fold, CHAPERONE; 1.82A {Shigella flexneri} SCOP: d.198.1.1
Probab=25.40 E-value=1.1e+02 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHcCCCeeE--ecCCCCceEEEECC
Q FD01850236_043 174 FRDIFINFGCNNAV--SGDGSDSVFMFRDG 201 (219)
Q Consensus 174 lrd~l~~lGc~~Av--~lDGg~SstL~~~g 201 (219)
+|+.|..+||.+.+ .||+-...+|..++
T Consensus 22 vr~AL~~~Gc~~~~i~~~D~HSTI~l~f~d 51 (145)
T 1RY9_D 22 VRDSLFTIGCPPSIITDLDSHSAITISLDS 51 (145)
T ss_dssp HHHHHHHHTCCGGGEEESSTTSCEEEEETT
T ss_pred HHHHHHHcCCCHHHhcCccCCCcEEEEeCC
No 27
>2V78_C FRUCTOKINASE; KINASE, TRANSFERASE, PFKB FAMILY CARBOHYDRATE KINASE, 2-KETO-3-DEOXYGLUCONATE KINASE; 2.0A {SULFOLOBUS SOLFATARICUS} SCOP: c.72.1.1
Probab=23.46 E-value=4.8e+02 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred cHHHHHHHHHHcCCCeeEecCCCCceEEEECCEEEEccccccCcccccC
Q FD01850236_043 170 TFDDFRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVKSNELKELTMTFG 218 (219)
Q Consensus 170 tl~elrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~P~~~K~~~~~~G 218 (219)
.+.++.+.|.+.|+...+-.+|..-+.++.+++....|.......-+.|
T Consensus 207 ~~~~~~~~l~~~~~~~vivt~g~~g~~~~~~~~~~~~~~~~~~~~~~~G 255 (313)
T 2V78_C 207 DPDEAYRKYKELGVKVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTG 255 (313)
T ss_dssp CHHHHHHHHHHTTEEEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTT
T ss_pred CHHHHHHHHHHcCCcEEEEEcCCCcEEEEECCceEEecCccccccCCCC
No 28
>PF20212.2 ; DUF6572 ; Family of unknown function (DUF6572)
Probab=23.37 E-value=2.5e+02 Score=22.29 Aligned_cols=34 Identities=3% Similarity=-0.033 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred EEEEcC-CCc-EEEEEeccCCC--CccHHHHHHHHHHc
Q FD01850236_043 148 GFGITP-EGK-CYVAVQAHQNP--GMTFDDFRDIFINF 181 (219)
Q Consensus 148 aiG~~~-~g~-~~vvV~g~~~~--Gmtl~elrd~l~~l 181 (219)
.|++++ ++. .|+++|.+++. ...+..|++.+...
T Consensus 11 ~i~~~~~~~~~~L~i~d~~~w~~~~~~~~~L~~Kin~Y 48 (107)
T A0A5C6RF35_9BA 11 FIGTDDVSNTVVLTISDHLDWSDTHNHLVLLQEKLNSY 48 (107)
T ss_pred EEEEeCCCCEEEEEEEeCCCCCChHHHHHHHHHHHHHH
No 29
>5WEZ_A Tir chaperone; effector, complex, secretion, translocation, CHAPERONE; 2.74A {Escherichia coli O127:H6 (strain E2348/69 / EPEC)} SCOP: d.198.1.1, l.1.1.1
Probab=23.14 E-value=2.6e+02 Score=21.63 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHcCCCeeEecCCCCceEEEECCEEEE
Q FD01850236_043 174 FRDIFINFGCNNAVSGDGSDSVFMFRDGDFVV 205 (219)
Q Consensus 174 lrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~ 205 (219)
|+++...+|+. .+.+|..|+..|.+++++.+
T Consensus 10 l~~~~~~lg~~-~~~~~~~g~~~l~~~~~~~v 40 (139)
T 5WEZ_A 10 LDRFAEKIGVG-SISFNENRLCSFAIDEIYYI 40 (139)
T ss_dssp HHHHHHHHTCC-CCCCCTTSEEEEEETTTEEE
T ss_pred HHHHHHHhCCC-CCccCCCCeEEEEECCEEEE
No 30
>3C6F_B YetF protein; UNCHARACTERIZED PROTEIN, PREDICTED MEMBRANE PROTEIN, PROTEIN STRUCTURE INITIATIVE, PSI-2, New York SGX Research Center for Structural; 2.5A {Bacillus subtilis}
Probab=22.75 E-value=2e+02 Score=24.49 Aligned_cols=29 Identities=3% Similarity=0.004 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred EEEEEeccCCC------CccHHHHHHHHHHcCCCe
Q FD01850236_043 157 CYVAVQAHQNP------GMTFDDFRDIFINFGCNN 185 (219)
Q Consensus 157 ~~vvV~g~~~~------Gmtl~elrd~l~~lGc~~ 185 (219)
+.||.||+-.. |++-..|.+.|.+.|+.+
T Consensus 93 ~~lI~dG~i~~~~L~~~~~~e~wL~~~L~~~g~~~ 127 (153)
T 3C6F_B 93 ITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDK 127 (153)
T ss_dssp EEEEETTEECHHHHHHTTCCHHHHHHHHHHTTCCS
T ss_pred eEEEECCEEchHhHHHCCCCHHHHHHHHHHCCCCC
No 31
>PF08002.15 ; DUF1697 ; Protein of unknown function (DUF1697)
Probab=22.46 E-value=2.6e+02 Score=22.57 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EEEEEeccCCC---CccHHHHHHHHHHcCCCee
Q FD01850236_043 157 CYVAVQAHQNP---GMTFDDFRDIFINFGCNNA 186 (219)
Q Consensus 157 ~~vvV~g~~~~---Gmtl~elrd~l~~lGc~~A 186 (219)
+++..-|-.-+ -+++.+|++.|.++||.++
T Consensus 4 ~v~llRgiNvgg~~~~~m~~L~~~~~~~G~~~v 36 (137)
T Q7UU99_RHOBA/3 4 WIALFRGINVGGKNKLPMATLRSTLESIGCQSV 36 (137)
T ss_pred EEEEeeccccCCCCCcCHHHHHHHHHHCCCCCc
No 32
>PF03683.17 ; UPF0175 ; Uncharacterised protein family (UPF0175)
Probab=22.16 E-value=1.6e+02 Score=21.09 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CccHHHHHHHHHHcCCCeeEecC
Q FD01850236_043 168 GMTFDDFRDIFINFGCNNAVSGD 190 (219)
Q Consensus 168 Gmtl~elrd~l~~lGc~~Av~lD 190 (219)
|||..|+.++|.+.|+. ++.+
T Consensus 39 g~s~~ef~~~l~~~gi~--~~~~ 59 (69)
T Y27A_AERPE/14- 39 GLSKWDFLELLAREGIP--LHYS 59 (69)
T ss_pred CCCHHHHHHHHHHcCCC--CCCC
No 33
>8BGQ_A Thiosulfate sulfurtransferase; mitochondrial enzyme, STRUCTURAL PROTEIN; 1.279A {Homo sapiens} SCOP: c.46.1.2
Probab=21.93 E-value=2.3e+02 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred EEEcCCCcEEEEEeccCCC-CccHHHHHHHHHHcCCCeeEecCCC
Q FD01850236_043 149 FGITPEGKCYVAVQAHQNP-GMTFDDFRDIFINFGCNNAVSGDGS 192 (219)
Q Consensus 149 iG~~~~g~~~vvV~g~~~~-Gmtl~elrd~l~~lGc~~Av~lDGg 192 (219)
+|+.++..++|+. .... +.....+...|..+|+.++..||||
T Consensus 88 ~g~~~~~~vvvy~--~~~~~~~~~~~~~~~l~~~G~~~v~~L~gG 130 (291)
T 8BGQ_A 88 LGISNHTHVVVYD--GEHLGSFYAPRVWWMFRVFGHRTVSVLNGG 130 (291)
T ss_dssp TTCCTTCEEEEEC--CCSSSCSSHHHHHHHHHHTTCCCEEEETTH
T ss_pred cCCCCCCEEEEeC--CCCccccHHHHHHHHHHHhCCCCEEEeCCc
No 34
>4G6T_A Type III chaperone protein ShcA; Chaperone Effector, secretion chaperone, CHAPERONE; 1.56A {Pseudomonas syringae pv. tomato}
Probab=21.25 E-value=3.2e+02 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHcCCCeeEecCCCCceEEEECCEEEE
Q FD01850236_043 174 FRDIFINFGCNNAVSGDGSDSVFMFRDGDFVV 205 (219)
Q Consensus 174 lrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~ 205 (219)
|+++..++|... +.+|..|+.+|..++....
T Consensus 13 l~~~~~~lg~~~-~~~~~~g~~~l~~~~~~~i 43 (128)
T 4G6T_A 13 LDDFSRSLEMQP-LVFDDHGTCNMIIDNTFAL 43 (128)
T ss_dssp HHHHHHHTTSSC-CCCCTTSEEEEEETTTEEE
T ss_pred HHHHHHHcCCCC-CCcCCCCcEEEEECCeEEE
No 35
>1JYO_A SicP; Salmonella, bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded, protein folding, SptP, SicP; 1.9A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=20.90 E-value=3.2e+02 Score=20.91 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHcCCCeeEecCCCCceEEEECCEEEEc
Q FD01850236_043 174 FRDIFINFGCNNAVSGDGSDSVFMFRDGDFVVK 206 (219)
Q Consensus 174 lrd~l~~lGc~~Av~lDGg~SstL~~~g~~~~~ 206 (219)
|.++...+|+. +.+|..|...|.+++.+...
T Consensus 8 l~~~~~~~g~~--~~~~~~g~~~l~~d~~~~i~ 38 (130)
T 1JYO_A 8 IANIGEKLGLP--LTFDDNNQCLLLLDSDIFTS 38 (130)
T ss_dssp HHHHHHHHTSC--CCCCTTSEEEEEETTTEEEE
T ss_pred HHHHHHHhCCC--ceeCCCCcEEEEECCceeEE
No 36
>2FM8_B Surface presentation of antigens protein spaK; type III secretion, chaperone, translocation, protein folding, virulence, Salmonella, bacterial, CHAPERONE-CELL INVASION COMPLEX; 2.2A {Salmonella typhimurium} SCOP: d.198.1.0, l.1.1.1
Probab=20.15 E-value=1.6e+02 Score=23.58 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHHHHcCCCee-E-ecCCCCceEEEECCEEEE
Q FD01850236_043 174 FRDIFINFGCNNA-V-SGDGSDSVFMFRDGDFVV 205 (219)
Q Consensus 174 lrd~l~~lGc~~A-v-~lDGg~SstL~~~g~~~~ 205 (219)
|+++.+.+|+..+ + -+|..|..+|..++...+
T Consensus 10 l~~l~~~lg~~~~~l~~~d~~~~~~l~~~~~~~i 43 (135)
T 2FM8_B 10 VRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSI 43 (135)
T ss_dssp HHHHHHTTTCC----------CCEEECCTTSCCE
T ss_pred HHHHHHHcCCCHHHcCCCCCCCcEEEEecCCCCE
No 37
>2JBH_B PHOSPHORIBOSYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1; GLYCOSYLTRANSFERASE, TRANSFERASE, PURINE SALVAGE; HET: CAS, PO4, 5GP; 1.7A {HOMO SAPIENS} SCOP: c.61.1.1
Probab=20.07 E-value=3.4e+02 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCcEEEEEeccCCCCccHHHHHHHHHHcCCCeeEec
Q FD01850236_043 154 EGKCYVAVQAHQNPGMTFDDFRDIFINFGCNNAVSG 189 (219)
Q Consensus 154 ~g~~~vvV~g~~~~Gmtl~elrd~l~~lGc~~Av~l 189 (219)
.++-+++||..-..|.|+.++.+.+.+.|+..+..+
T Consensus 133 ~~~~vliVDD~~~tG~t~~~~~~~l~~~g~~~v~~~ 168 (225)
T 2JBH_B 133 AGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVA 168 (225)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEEeCccCCCHHHHHHHHHHHhhCCCeEEEE
No 38
>PF04008.18 ; Adenosine_kin ; Adenosine specific kinase
Probab=20.03 E-value=5.6e+02 Score=22.92 Aligned_cols=44 Identities=9% Similarity=0.201 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred CCCCceEEEEEcCCCc-EEEEEeccCCC----CccHHHHHHHHHHcCCC
Q FD01850236_043 141 TPGIGKIGFGITPEGK-CYVAVQAHQNP----GMTFDDFRDIFINFGCN 184 (219)
Q Consensus 141 ~~~~gRTaiG~~~~g~-~~vvV~g~~~~----Gmtl~elrd~l~~lGc~ 184 (219)
+...-..+|+-+..|+ ++=||||..+. ---..|=+++|+++|+.
T Consensus 104 TANP~~Vivaet~~GrgvlGVvDG~~p~gvE~~~d~~~R~~~LrkiGYk 152 (152)
T B0VJL3_CLOAI/8 104 TANPVEVILAQTEQGRGILGVIDGFSPKGIELDTDITHRKKFLLDIGYK 152 (152)
T ss_pred cCCceEEEEEEcCCCceEEEEEecCCCCCCCChHhHHHHHHHHHHcCCC