Query FD01542821_04012 hypothetical protein
Match_columns 208
No_of_seqs 27 out of 38
Neff 3.02031
Searched_HMMs 86581
Date Tue Feb 27 18:54:47 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/9207838.hhr -oa3m ../results/9207838.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7ENH_A CRISPR-associated endon 87.1 0.94 1.1E-05 36.4 2.4 26 145-170 70-95 (166)
2 5H0M_A HNH endonuclease; Therm 85.8 0.52 5.9E-06 34.2 0.3 45 140-185 81-127 (130)
3 PF13395.10 ; HNH_4 ; HNH endon 82.7 3.3 3.8E-05 22.8 2.6 26 145-170 16-41 (55)
4 8FLI_B Maturase reverse transc 77.1 3.2 3.7E-05 37.7 2.1 36 145-181 513-548 (562)
5 7QOI_Ch Portal vertex capsid p 75.3 3.9 4.5E-05 34.4 2.0 23 1-23 51-73 (104)
6 PF13392.10 ; HNH_3 ; HNH endon 72.8 10 0.00012 24.7 3.2 36 136-173 7-51 (55)
7 7UIO_Bo Mediator of RNA polyme 65.3 5.9 6.8E-05 44.1 1.3 98 67-176 885-989 (1081)
8 7MPZ_A CRISPR-associated endon 57.9 15 0.00017 28.6 2.0 25 145-169 68-92 (154)
9 PF15636.10 ; Tox-GHH ; GHH sig 57.7 43 0.0005 23.8 4.1 63 99-162 4-73 (78)
10 6SG9_FH mt-SAF16; mitochondria 57.4 17 0.0002 37.5 2.8 33 144-181 103-135 (457)
11 7EL1_A CRISPR-associated endon 54.6 11 0.00013 40.3 1.1 26 145-170 550-575 (1053)
12 6J9N_A CRISPR-associated endon 53.5 25 0.00029 27.8 2.6 26 145-170 75-100 (161)
13 6KC8_A CRISPR-associated endon 53.3 20 0.00023 39.0 2.7 29 145-173 582-610 (1083)
14 PF05315.15 ; ICEA ; ICEA Prote 52.0 17 0.0002 32.5 1.7 26 142-167 101-136 (218)
15 PF12654.11 ; DUF3786 ; Domain 51.2 16 0.00018 31.1 1.3 24 18-41 106-129 (181)
16 5MKW_B DNA annealing helicase 51.0 28 0.00032 28.0 2.6 52 114-170 42-95 (122)
17 PF14279.10 ; HNH_5 ; HNH endon 49.8 14 0.00016 19.5 0.6 25 145-170 10-34 (55)
18 8F43_A CRISPR-associated endon 49.7 33 0.00038 24.9 2.5 26 145-170 36-61 (111)
19 8HNT_A CRISPR-associated endon 48.6 26 0.0003 38.1 2.6 29 145-173 575-603 (1055)
20 PF13391.10 ; HNH_2 ; HNH endon 47.0 47 0.00054 20.0 2.6 39 142-181 5-56 (62)
21 8CTL_D IscB; CRISPR, IscB, HEA 46.6 9.7 0.00011 37.7 -0.7 23 148-170 243-265 (496)
22 6GHC_A 5-methylcytosine-specif 46.4 25 0.00029 30.9 1.8 35 145-180 232-266 (287)
23 1U3E_M HNH homing endonuclease 44.4 58 0.00067 25.2 3.3 33 136-170 59-91 (174)
24 5VGB_A CRISPR-associated endon 43.7 97 0.0011 24.2 4.4 74 97-170 3-93 (142)
25 6O56_B CRISPR-associated endon 42.4 82 0.00095 24.5 3.9 73 96-170 2-85 (135)
26 3M7K_A restriction endonucleas 42.0 44 0.00051 25.3 2.3 27 141-170 82-108 (142)
27 4OGE_A HNH endonuclease domain 39.6 41 0.00048 36.9 2.5 23 148-170 578-601 (1101)
28 PF08748.15 ; Phage_TAC_4 ; Pha 38.5 1.1E+02 0.0013 23.4 4.0 49 90-139 29-77 (103)
29 6M0X_A CRISPR-associated endon 37.8 23 0.00027 38.5 0.4 26 145-170 593-618 (1122)
30 3BHP_B UPF0291 protein ynzC; N 33.2 62 0.00072 24.7 1.9 24 100-123 28-51 (60)
31 5B2Q_A CRISPR-associated endon 32.8 59 0.00069 38.3 2.5 29 145-173 965-996 (1632)
32 6GHS_A TagI restriction endonu 32.2 96 0.0011 26.5 3.0 35 145-180 222-258 (311)
33 PF05766.16 ; NinG ; Bacterioph 31.8 32 0.00036 28.8 0.2 29 142-170 102-133 (197)
34 7RWK_B SAVED domain-containing 31.7 70 0.00081 29.1 2.3 23 148-170 42-75 (384)
35 4H9D_B HNH endonuclease; Struc 31.7 37 0.00043 24.3 0.5 26 145-170 47-72 (112)
36 PF10045.13 ; DUF2280 ; Unchara 30.5 84 0.00097 26.3 2.4 37 103-140 57-93 (103)
37 PF05551.15 ; zf-His_Me_endon ; 30.3 1.7E+02 0.002 22.3 3.9 33 136-170 35-70 (117)
38 PF12639.11 ; Colicin-DNase ; D 30.0 1.9E+02 0.0022 16.8 4.7 38 115-152 38-75 (97)
39 5UOI_A HHH_rd1_0142; de novo d 29.7 91 0.0011 22.8 2.1 17 18-34 14-30 (43)
40 5B2R_B CRISPR-associated endon 29.6 50 0.00058 37.4 1.3 26 148-173 840-865 (1372)
41 2GK1_E Beta-hexosaminidase sub 29.5 29 0.00033 19.9 -0.3 10 199-208 1-10 (52)
42 PF12392.12 ; DUF3656 ; Collage 29.2 1.6E+02 0.0019 23.4 3.7 48 62-109 68-115 (124)
43 PF05979.16 ; DUF896 ; Bacteria 29.0 79 0.00092 24.0 1.8 24 100-123 24-47 (61)
44 PF13575.10 ; DUF4135 ; Domain 28.1 1.4E+02 0.0016 28.2 3.7 81 65-145 282-379 (383)
45 8D2L_A CRISPR-associated endon 27.9 50 0.00058 36.4 0.9 23 148-170 587-609 (1138)
46 4X86_A Ubiquitin-like protein 25.7 1.4E+02 0.0016 21.8 2.6 36 102-140 11-50 (58)
47 PF01844.27 ; HNH ; HNH endonuc 24.3 92 0.0011 14.7 1.1 23 148-170 14-36 (47)
48 8T1T_D RiPP precursor (SonA); 23.8 1.7E+02 0.002 22.2 2.9 27 116-142 13-52 (75)
49 PF10922.12 ; T7-like_gp12 ; Ba 21.9 1.5E+02 0.0017 24.6 2.3 18 15-32 2-19 (85)
50 5DZT_A CylM; Cytolysin, lanthi 21.7 3.4E+02 0.004 29.1 5.3 93 90-188 503-602 (993)
51 2HEP_A UPF0291 protein ynzC; S 21.7 1.3E+02 0.0016 24.5 2.0 25 99-123 27-51 (85)
52 7CEI_B PROTEIN (COLICIN E7 IMM 21.6 4.1E+02 0.0048 21.4 4.7 63 114-176 126-199 (206)
53 2KY4_A Phycobilisome linker po 21.5 2.8E+02 0.0032 22.6 3.8 48 97-152 95-145 (149)
54 7RWM_C SAVED domain-containing 21.4 97 0.0011 28.4 1.3 30 141-170 45-83 (385)
No 1
>7ENH_A CRISPR-associated endonuclease Cas9; Inhibitor, Complex, VIRAL PROTEIN; HET: NI; 2.097A {Staphylococcus aureus}
Probab=87.13 E-value=0.94 Score=36.38 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
|..++++|-+|...+|+++++|++++
T Consensus 70 ~~~~~idHiiP~s~~~~~~~~N~~l~ 95 (166)
T 7ENH_A 70 PFNYEVDHIIPRSVSFDNSFNNKVLV 95 (166)
T ss_dssp GGGEEEEESSCHHHHCCCSGGGEEEE
T ss_pred CCceeeeeeeeccccCCCchhceEEe
No 2
>5H0M_A HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2}
Probab=85.78 E-value=0.52 Score=34.21 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HcCCCCCCceEEeeccCCC--CCCCcccceEEeeCCcchhhhHHHHHH
Q FD01542821_040 140 ATGKVPSGWQVHHKIPLDD--GGTNAIDNLVLIQNSPYHSALSKAQSI 185 (208)
Q Consensus 140 a~G~vP~gw~VHHKLPLDD--sGtN~F~NLvLI~~~peH~vfT~~Q~~ 185 (208)
..+..+..++|||..|+.. +|.++.+||+++-..- |...+.....
T Consensus 81 ~~~~~~~~~~~~Hi~~~~~~~~~~~~~~nl~~lc~~c-h~~~~~~~~~ 127 (130)
T 5H0M_A 81 KEKKITRAVIVDHITPLLVDWSKRLDMDNLQSLCQAC-HNRKTAEDKR 127 (130)
T ss_dssp HTTCCCBCCEEEESSCTTTCGGGTTCGGGEEEECHHH-HHHHHHHHHH
T ss_pred hhcCCCceEEeeeeeecccCHHHcCChhHHHhhcHHH-HHHHhHHHHh
No 3
>PF13395.10 ; HNH_4 ; HNH endonuclease
Probab=82.65 E-value=3.3 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+..|+++|.+|....+.+...|++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (55)
T D3UFL8_HELM1/5 16 QRALQIDHAFPLSRSLDDSQSNKVLC 41 (55)
T ss_pred cCceEEEEEeeeecCcCCCcccEEEe
No 4
>8FLI_B Maturase reverse transcriptase; group II intron, splicing, branching, maturase, SPLICING-RNA complex;{Thermosynechococcus vestitus}
Probab=77.10 E-value=3.2 Score=37.65 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCCceEEeeccCCCCCCCcccceEEeeCCcchhhhHH
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLIQNSPYHSALSK 181 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI~~~peH~vfT~ 181 (208)
...+++||..|+.++|.+.++||+++-... |...+.
T Consensus 513 ~~~~~~hhi~~~~~~~~~~~~n~~~lc~~c-h~~~~~ 548 (562)
T 8FLI_B 513 DMLTEIHHILPKHKGGSDDLDNLVLIHANC-HKQVHS 548 (562)
T ss_dssp -------------------------------------
T ss_pred cCcEEEEeceecccCCCCchhheeEeCHHH-HHHHcc
No 5
>7QOI_Ch Portal vertex capsid protein gp57; crAssphage, bacteriophage, virus, DNA virus, portal, vertex, capsid, connector; HET: MG; 3.62A {Bacteroides phage crAss001}
Probab=75.27 E-value=3.9 Score=34.36 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=0.0 Template_Neff=1.700
Q ss_pred CCcchHHHHHHHHhcCccCCCHH
Q FD01542821_040 1 KTINSKAAGRLLAAGGLYNGNVE 23 (208)
Q Consensus 1 ~tiNSka~GRLLAAGGvYn~N~e 23 (208)
|..|.++|+-||.+-|+|||..+
T Consensus 51 KA~Np~~Ae~iLKssGmyNG~q~ 73 (104)
T 7QOI_Ch 51 KAINPQQAEMLLKSNGIYNGSSY 73 (104)
T ss_pred ecCCHHHHHHHHHhcCccCCccc
No 6
>PF13392.10 ; HNH_3 ; HNH endonuclease
Probab=72.77 E-value=10 Score=24.65 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHcCCCCCC---------ceEEeeccCCCCCCCcccceEEeeCC
Q FD01542821_040 136 LMKLATGKVPSG---------WQVHHKIPLDDGGTNAIDNLVLIQNS 173 (208)
Q Consensus 136 l~~ma~G~vP~g---------w~VHHKLPLDDsGtN~F~NLvLI~~~ 173 (208)
+...-.|..|.+ +.|||+=- +..+|..+||.++...
T Consensus 7 v~~~~~g~~~~~~~~~~~~~~~~v~H~d~--~~~~~~~~NL~~~~~~ 51 (55)
T Q84408_PBCV1/3 7 VVELFFGKLPKTVEINGKTHHLIVDHIDD--DKQNARLDNLQLLTNQ 51 (55)
T ss_pred HHHHHhCCCCCCcccCCCceeEEEeeecC--CCccCCHHHeEEccHH
No 7
>7UIO_Bo Mediator of RNA polymerase II transcription subunit 15; Divergent transcription, Mediator, RNA Polymerase II, PIC, Pre-Initiation, Activation, Transcription Factor, Gal4, Gal4VP16, TRANSCRIPTION; 3.3A {Saccharomyces cerevisiae S288C}
Probab=65.32 E-value=5.9 Score=44.13 Aligned_cols=98 Identities=6% Similarity=0.008 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred HHHHHhhcccccCcceehhcCeEEecceecCCHHHHHHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCC
Q FD01542821_040 67 ADELTSYLGKYKKAHVLLDDMNVSELNYMRRDRAEYLALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKLATGKVPS 146 (208)
Q Consensus 67 leel~~ylGk~kGe~~lL~ni~V~kinYirR~r~E~~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~ 146 (208)
|.-|...||.......+-.-|...-.+-+|.. .|+. .|+.|.+..+.+++.+. |+ ..+..|..|..|.
T Consensus 885 l~tl~dclGlkd~~~dlG~PIP~qIaDkLRGr---------~fdk-frkA~Wkav~qDp~l~s-fk-~Nk~iMksg~aP~ 952 (1081)
T 7UIO_Bo 885 MSTLGDCLGIKDEEMLTSCTIPKAVVDHINGS---------GKRK-PTKAAQRARDQDSIDIS-IK-DNKLVMKSKFNKS 952 (1081)
T ss_pred cccHhHHhCCchhhccCCCCCChHHhhcccCC---------CCCC-ccHHhHHHhhcCccceE-Ee-cchHHHhcccCCc
Q ss_pred C--ceEEeeccCCCCCC-----CcccceEEeeCCcch
Q FD01542821_040 147 G--WQVHHKIPLDDGGT-----NAIDNLVLIQNSPYH 176 (208)
Q Consensus 147 g--w~VHHKLPLDDsGt-----N~F~NLvLI~~~peH 176 (208)
. |.+||+-+.+.+|. -+++||.+......|
T Consensus 953 r~kyeIhh~~~Is~gGdVYdi~~d~dnL~i~tp~k~h 989 (1081)
T 7UIO_Bo 953 NRSYSIALSNVAAIFKGIGGNFKDLSTLVHSSSPSTS 989 (1081)
T ss_pred cceeeecccccHHhcCccccCCcchhhccccCCCCCC
No 8
>7MPZ_A CRISPR-associated endonuclease Cas9; nuclease domain, CRISPR Cas9, DNA binding protein; 2.04A {Geobacillus stearothermophilus}
Probab=57.85 E-value=15 Score=28.62 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCCceEEeeccCCCCCCCcccceEE
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVL 169 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvL 169 (208)
+..+.++|-+|...+|.+++.|+++
T Consensus 68 ~~~~~i~hi~p~~~~~~~~~~N~~~ 92 (154)
T 7MPZ_A 68 PGYVEVDHVIPYSRSLDDSYTNKVL 92 (154)
T ss_dssp TTTEEEEESSCHHHHCCCSGGGEEE
T ss_pred CCceEEEEEccccCCCCCchhcchh
No 9
>PF15636.10 ; Tox-GHH ; GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=57.69 E-value=43 Score=23.76 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred HHHHHHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHHHc-CCCCCCceEEeecc------CCCCCCC
Q FD01542821_040 99 RAEYLALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKLAT-GKVPSGWQVHHKIP------LDDGGTN 162 (208)
Q Consensus 99 r~E~~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma~-G~vP~gw~VHHKLP------LDDsGtN 162 (208)
+..+...|+..-..+-...-..|...-.-...++++++..|.+ |.+| +|..||+-+ |-|.++|
T Consensus 4 ~r~l~~~~~~~~~~aW~~E~~~l~~g~~~~~~Wt~~e~~~ll~~g~~~-~y~~~~~~~~~~~p~la~d~~n 73 (78)
T I3KLV5_ORENI/2 4 ARVREEARKRAVEGAWEKEKRRVEAGDAGSRAWSEVEKQQLLSGGRVQ-GYDGYYSLPIEQQPELSDCPSN 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhCCCCC-CCcceecCCHHHCHhhCCCccc
No 10
>6SG9_FH mt-SAF16; mitochondrial ribosome, assembly intermediate, translation, RIBOSOME; HET: GTP, SAH; 3.1A {Trypanosoma brucei brucei}
Probab=57.36 E-value=17 Score=37.54 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred CCCCceEEeeccCCCCCCCcccceEEeeCCcchhhhHH
Q FD01542821_040 144 VPSGWQVHHKIPLDDGGTNAIDNLVLIQNSPYHSALSK 181 (208)
Q Consensus 144 vP~gw~VHHKLPLDDsGtN~F~NLvLI~~~peH~vfT~ 181 (208)
+|.||.||| ..|+|-|.-=-++++.+.+..+++
T Consensus 103 pP~GW~v~H-----~~GSnyF~mt~~~~~~~~~~~~~~ 135 (457)
T 6SG9_FH 103 PPLGWRVRH-----PSGSNYFVMTRTLKNGVQSAELNN 135 (457)
T ss_pred CCCCeeEec-----CCCCCcEEEEEeeeCCcccHHHcC
No 11
>7EL1_A CRISPR-associated endonuclease Cas9; UNKNOWN FUNCTION; 2.22A {Staphylococcus aureus}
Probab=54.62 E-value=11 Score=40.34 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
|..|+++|-+|...+|+|+++|++|.
T Consensus 550 ~~~~~idHIiP~s~~~~~s~~N~vl~ 575 (1053)
T 7EL1_A 550 PFNYEVDHIIPRSVSFDNSFNNKVLV 575 (1053)
T ss_dssp GGGEEEEESSCTTTCCCCSTTSEEEE
T ss_pred CccceeeeeccccccCCCchhhhhhh
No 12
>6J9N_A CRISPR-associated endonuclease Cas9; AcrIIC3, HYDROLASE-HYDROLASE INHIBITOR complex; HET: MSE; 2.606A {Neisseria meningitidis}
Probab=53.54 E-value=25 Score=27.80 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+..+.++|.+|...+|.++++|+++.
T Consensus 75 ~~~~~~~hi~p~~~~~~~~~~N~~~~ 100 (161)
T 6J9N_A 75 KGYVEIDHALPFSRTWDDSFNNKVLV 100 (161)
T ss_dssp TTTEEEEESSCHHHHCCCSGGGEEEE
T ss_pred CCCeEEeeecccccCCCCchhceEEc
No 13
>6KC8_A CRISPR-associated endonuclease Cas9; CRISPR-Cas9, NmeCas9, Nme1Cas9, hydrolase, ternary complex, HYDROLASE-RNA-DNA complex; 2.9A {Neisseria meningitidis 8013}
Probab=53.30 E-value=20 Score=38.97 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCceEEeeccCCCCCCCcccceEEeeCC
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLIQNS 173 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI~~~ 173 (208)
|..++++|-+|...+|+|+++|+||....
T Consensus 582 ~~~~eidHIiP~s~~~~ds~~N~vl~~~~ 610 (1083)
T 6KC8_A 582 KGYVEIDHALPFSRTWDDSFNNKVLVLGS 610 (1083)
T ss_dssp TTSEEEEESSCTTTSCCCSTTSEEEEETH
T ss_pred CCCceeeeeccchhcCCCCcccEEEeech
No 14
>PF05315.15 ; ICEA ; ICEA Protein
Probab=52.00 E-value=17 Score=32.54 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CCCCC----CceEEeeccCCCCC------CCcccce
Q FD01542821_040 142 GKVPS----GWQVHHKIPLDDGG------TNAIDNL 167 (208)
Q Consensus 142 G~vP~----gw~VHHKLPLDDsG------tN~F~NL 167 (208)
|..+. ..+|.||.|+..+| +|+.+||
T Consensus 101 G~~~~~~~~~L~iDHkiP~~~~g~~~~~~~~~~~nf 136 (218)
T J9R1X7_RIEAN/2 101 GINGNSINTKIEIDHKDGRKDNDRVSNIKTQRLEDF 136 (218)
T ss_pred cCCCCcCCceEEEeecCCCccCCCccccccCCHHHh
No 15
>PF12654.11 ; DUF3786 ; Domain of unknown function (DUF3786)
Probab=51.22 E-value=16 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred cCCCHHHHHHHHHHhccHHHhccc
Q FD01542821_040 18 YNGNVEGFRHTAEQLGGEAVEGYD 41 (208)
Q Consensus 18 Yn~N~egFr~TA~qLGG~A~~G~d 41 (208)
|.++++.|.+.+++|||..++..|
T Consensus 106 f~~~~~~~~~a~~~LGG~~~~~gD 129 (181)
T U5RSN8_9CLOT/2 106 FGHKGDLFLEAGLKLGGKKVDVGD 129 (181)
T ss_pred HCcCHHHHHHHHHHcCCEECcCCC
No 16
>5MKW_B DNA annealing helicase and endonuclease ZRANB3; endonuclease, metalloprotein, zinc-binding, DNA-binding, HYDROLASE; HET: GOL; 2.0A {Homo sapiens}
Probab=50.98 E-value=28 Score=27.97 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCCC-ceEEeeccCCCCCCC-cccceEEe
Q FD01542821_040 114 RPNFLKSLSDHPDALATFEPNDLMKLATGKVPSG-WQVHHKIPLDDGGTN-AIDNLVLI 170 (208)
Q Consensus 114 Rk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~g-w~VHHKLPLDDsGtN-~F~NLvLI 170 (208)
+.+|+... +...+..+.+.+|-....... |++||..|..++|.. +.+|++++
T Consensus 42 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~h~~~~~~gg~~~~~~n~~~l 95 (122)
T 5MKW_B 42 RKNLLYAT-----WTSKLPLEQLNEMIRNPGEGHFWQVDHIKPVYGGGGQCSLDNLQTL 95 (122)
T ss_dssp HHHHHHTS-----GGGGSCHHHHHHHHHCCCGGGTEEEEESSCCTTSCCCCSGGGEEEE
T ss_pred HHHHHHHh-----hhccCCHHHHHHHHhCCCCCCceeecccccccCCCCCCCHHHHHHh
No 17
>PF14279.10 ; HNH_5 ; HNH endonuclease
Probab=49.75 E-value=14 Score=19.51 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=0.0 Template_Neff=13.900
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+..|.++|..|...+|.+...| ..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~ 34 (55)
T E3FHW0_STIAD/9 10 PAVQSREHVLPEFLGGNKTLPG-GAV 34 (55)
T ss_pred CCCCCccccchHHhCCCCCCCC-ccc
No 18
>8F43_A CRISPR-associated endonuclease Cas9; nuclease domain, CRISPR Cas9, DNA binding protein, HYDROLASE; 1.37A {Geobacillus stearothermophilus}
Probab=49.69 E-value=33 Score=24.93 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
...+.++|.+|.-.+|.+++.|+++.
T Consensus 36 ~~~~~i~hi~p~~~~~~~~~~n~~~~ 61 (111)
T 8F43_A 36 PGYVEVDHVIPYSRSLDDSYTNAVLV 61 (111)
T ss_dssp TTSEEEEESSCHHHHCCCSGGGEEEE
T ss_pred CCceEEeeeeecccCCCCchhceeec
No 19
>8HNT_A CRISPR-associated endonuclease Cas9; Cas9, ANTIMICROBIAL PROTEIN, REC lobe, IMMUNE SYSTEM; 3.06A {Haemophilus parainfluenzae}
Probab=48.64 E-value=26 Score=38.11 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCceEEeeccCCCCCCCcccceEEeeCC
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLIQNS 173 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI~~~ 173 (208)
+..++|+|-+|...+|+|+++|+||....
T Consensus 575 ~~~~eidHIiP~s~~~~ds~~N~vl~~~~ 603 (1055)
T 8HNT_A 575 KGYVEVDHALPFSRTWDDSFNNKVLVLAN 603 (1055)
T ss_dssp TTTEEEEESSCHHHHCCCSGGGEEEEEHH
T ss_pred CCCeEEEeeeechhCCCCccccEEEeehh
No 20
>PF13391.10 ; HNH_2 ; HNH endonuclease
Probab=47.03 E-value=47 Score=19.98 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCCCCCceEEeeccCCCC-------------CCCcccceEEeeCCcchhhhHH
Q FD01542821_040 142 GKVPSGWQVHHKIPLDDG-------------GTNAIDNLVLIQNSPYHSALSK 181 (208)
Q Consensus 142 G~vP~gw~VHHKLPLDDs-------------GtN~F~NLvLI~~~peH~vfT~ 181 (208)
|......+++|-+|...+ +.++..|.+++..+. |..|..
T Consensus 5 g~~~~~~~~ahi~~~~~~~~~~~~~~~~~~~~~~~~~N~i~l~~~~-~~~fd~ 56 (62)
T Q5KQA0_CRYNJ/1 5 GAHWESCTASHIVPASRPDIYDCFYGDGGGLPMFRPSAGLLLRDDL-HHAFDR 56 (62)
T ss_pred CCcccceeEEEEecccchhhhhhhcCCCCCCCCCChHHhEEECchH-HHHhhc
No 21
>8CTL_D IscB; CRISPR, IscB, HEARO RNA, omega RNA, RNA BINDING PROTEIN-RNA-DNA complex; 3.1A {synthetic construct}
Probab=46.60 E-value=9.7 Score=37.65 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred ceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 148 WQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 148 w~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+++||..|...+|+++++||++.
T Consensus 243 ~~v~HIip~s~~g~~~~~Nlv~l 265 (496)
T 8CTL_D 243 DHYHHVVPRRKNGSETLENRVGL 265 (496)
T ss_dssp -----------------------
T ss_pred cCccceeehhcCCCCCchhhHHh
No 22
>6GHC_A 5-methylcytosine-specific restriction enzyme A; HNH ENDONUCLEASE, MODIFICATION DEPENDENT RESTRICTION, 5-METHYLCYTOSINE, 5MC, 5-HYDROXYMETHYLCYTOSINE, 5HMC, BBA-ME NUCLEASE, ScoMcrA, HYDROLASE; 2.85A {Escherichia coli (strain K12)}
Probab=46.38 E-value=25 Score=30.88 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCCceEEeeccCCCCCCCcccceEEeeCCcchhhhH
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLIQNSPYHSALS 180 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI~~~peH~vfT 180 (208)
+...++||..|+.++|.+.-+|++++.... |..+.
T Consensus 232 ~~~le~hHi~~~~~~g~~~~~N~~~lcp~c-h~~~h 266 (287)
T 6GHC_A 232 NPYLEVHHVIPLSSGGADTTDNCVALCPNC-HRELH 266 (287)
T ss_dssp EECCEEEESSCTTTTCCBSGGGEEEECHHH-HHHHH
T ss_pred CceeEEEEEEehhhCCCCcHHhEEEeCHHH-HHHHh
No 23
>1U3E_M HNH homing endonuclease; HNH catalytic motif, Helix-turn-helix DNA binding domain, protein-DNA complex, DNA binding protein-DNA COMPLEX; HET: EDO; 2.92A {Bacillus phage SPO1} SCOP: d.285.1.1, d.4.1.3
Probab=44.39 E-value=58 Score=25.21 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred HHHHHcCCCCCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 136 LMKLATGKVPSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 136 l~~ma~G~vP~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+.....|..|.++.|||+ -.+.-+|..+||.++
T Consensus 59 v~~~~~~~~~~~~~v~h~--~~~~~~~~~~NL~~~ 91 (174)
T 1U3E_M 59 VAIHFCEGYEEGLVVDHK--DGNKDNNLSTNLRWV 91 (174)
T ss_dssp HHHHHCTTCCTTCEEEET--TSCTTCCCGGGEEEE
T ss_pred HHHHhcCCccCCeEEECC--CCCCCcCChhhEEEc
No 24
>5VGB_A CRISPR-associated endonuclease Cas9; Protein, RNA, HYDROLASE-HYDROLASE inhibitor complex; HET: GOL; 1.497A {Neisseria meningitidis}
Probab=43.65 E-value=97 Score=24.21 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCHHHHHHHHHHhccccCHHHHHHHhcC---HhHHhhCCHHHHHHHHcCCCCCC--------------ceEEeeccCCCC
Q FD01542821_040 97 RDRAEYLALRGQFNNTVRPNFLKSLSDH---PDALATFEPNDLMKLATGKVPSG--------------WQVHHKIPLDDG 159 (208)
Q Consensus 97 R~r~E~~~LR~eFnn~VRk~FLk~ia~~---pe~~~rf~~~~l~~ma~G~vP~g--------------w~VHHKLPLDDs 159 (208)
|..-+...-+++..+.-....+++.-.. +--....-...+.....+..|-- |.++|.+|...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~hi~p~~~~ 82 (142)
T 5VGB_A 3 ASEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLGRLNEKGYVEIDHALPFSRT 82 (142)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTTBCTTTCCBCCGGGTTSTTTEEEEESSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCcchHHHHHHHHhcCCcCCCCCCCCChhhccCCCceEEEEEeecccC
Q ss_pred CCCcccceEEe
Q FD01542821_040 160 GTNAIDNLVLI 170 (208)
Q Consensus 160 GtN~F~NLvLI 170 (208)
|.+++.|++++
T Consensus 83 ~~~~~~n~~~~ 93 (142)
T 5VGB_A 83 WDDSFNNKVLV 93 (142)
T ss_dssp CCCSGGGEEEE
T ss_pred CCCchhheeee
No 25
>6O56_B CRISPR-associated endonuclease Cas9/Csn1; nuclease, CRISPR Cas9, DNA BINDING PROTEIN; 1.9A {Streptococcus pyogenes serotype M1}
Probab=42.44 E-value=82 Score=24.46 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred cCCHHHHHHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCC-----------CCceEEeeccCCCCCCCcc
Q FD01542821_040 96 RRDRAEYLALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKLATGKVP-----------SGWQVHHKIPLDDGGTNAI 164 (208)
Q Consensus 96 rR~r~E~~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP-----------~gw~VHHKLPLDDsGtN~F 164 (208)
++++++-.++-+.++..+ ...|+...- +.-........+.+-..+..+ ..|.++|.+|..-.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~C~~c~~~~~~~~~~~~~~~h~~p~~~~~~~~~ 79 (135)
T 6O56_B 2 KNSRERMKRIEEGIKELG-SQILKEHPV-ENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSI 79 (135)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCHHHHSCC-CGGGGGSHHHHHHHHTTTBCSSSSSBCCTTCGGGSEEEESSCTTTCCCCSG
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHhCCC-CccchHHHHHHHHHHhCCCCCCCCCcccHhhcccCceeeeccHHHcCCCCh
Q ss_pred cceEEe
Q FD01542821_040 165 DNLVLI 170 (208)
Q Consensus 165 ~NLvLI 170 (208)
.|+++.
T Consensus 80 ~n~~~~ 85 (135)
T 6O56_B 80 DNKVLT 85 (135)
T ss_dssp GGEEEE
T ss_pred hceEec
No 26
>3M7K_A restriction endonuclease PacI; HNH restriction endonuclease, beta-beta-alpha-metal active site, 8 base-pair rare cutter, HYDROLASE-DNA complex; HET: SO4; 1.92A {Pseudomonas alcaligenes}
Probab=42.00 E-value=44 Score=25.29 Aligned_cols=27 Identities=15% Similarity=-0.096 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred cCCCCCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 141 TGKVPSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 141 ~G~vP~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
.+..|..+++||..| +..++.+|++++
T Consensus 82 ~~~~~~~~~~d~~~~---~~~~~~~N~~~~ 108 (142)
T 3M7K_A 82 RGYHIQCLGVDRSDS---FEGYSPQNARLA 108 (142)
T ss_dssp TSCBCCSCEEEESST---TSCBCTTTEEEE
T ss_pred CCCccccceeeeeCC---CCCCCCcceehh
No 27
>4OGE_A HNH endonuclease domain protein; CRISPR-Cas, Cas9, HNH, RuvC, RNA-guided DNA endonuclease, cytoplasmic, Hydrolase; HET: SPD; 2.201A {Actinomyces naeslundii}
Probab=39.60 E-value=41 Score=36.86 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred ceEEeeccCCCC-CCCcccceEEe
Q FD01542821_040 148 WQVHHKIPLDDG-GTNAIDNLVLI 170 (208)
Q Consensus 148 w~VHHKLPLDDs-GtN~F~NLvLI 170 (208)
++++|-+|..-+ |+|+|+|+||.
T Consensus 578 ~~idHIiP~s~~~~~~s~~N~vl~ 601 (1101)
T 4OGE_A 578 CQLDHIVPQAGPGSNNRRGNLVAV 601 (1101)
T ss_dssp CEEEESSCBSSSSCCCSGGGEEEE
T ss_pred ceeeeecccCCCCCCCCchhEEEe
No 28
>PF08748.15 ; Phage_TAC_4 ; Phage tail assembly chaperone
Probab=38.54 E-value=1.1e+02 Score=23.35 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EecceecCCHHHHHHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHH
Q FD01542821_040 90 SELNYMRRDRAEYLALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKL 139 (208)
Q Consensus 90 ~kinYirR~r~E~~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~m 139 (208)
..+.|.+++++|+.++..+... .-..+|..+..+-++...||++.+..|
T Consensus 29 ~~~~f~~~~~~e~~~~~~~~~~-~~~~~l~~~v~gW~~~~~~s~e~l~~l 77 (103)
T A0A5P8YFP7_YER 29 LTFTFRHMPVNEVINMEKVEGQ-SGLDFAEKFIEGWALPEVFSRENLEVL 77 (103)
T ss_pred EEEEEEeCCHHHHHHHHHHhcc-chHHHHHHHHhcCCCCCCCCHHHHHHH
No 29
>6M0X_A CRISPR-associated endonuclease Cas9 1; Cas9, CRISPR, DNA BINDING PROTEIN; HET: BA; 2.561A {Streptococcus thermophilus LMD-9}
Probab=37.82 E-value=23 Score=38.47 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
|..++++|-+|...+|+|++.|+||.
T Consensus 593 ~~~~eidHIiP~s~~~~ds~~N~vl~ 618 (1122)
T 6M0X_A 593 SNQFEVDAILPLSITFDDSLANKVLV 618 (1122)
T ss_dssp GGGEEEEESSCTTTSCCCSGGGEEEE
T ss_pred CcceEEeeeccchhcCCCChHhhHHh
No 30
>3BHP_B UPF0291 protein ynzC; NESG, SR384, O31818, UPF0291 protein ynzC, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; HET: MSE; 2.01A {Bacillus subtilis} SCOP: a.2.21.1
Probab=33.20 E-value=62 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHhccccCHHHHHHHhc
Q FD01542821_040 100 AEYLALRGQFNNTVRPNFLKSLSD 123 (208)
Q Consensus 100 ~E~~~LR~eFnn~VRk~FLk~ia~ 123 (208)
.|...||+++-..+|.+|...|.+
T Consensus 28 ~Eq~~LRkeYl~~~R~~~~~~L~~ 51 (60)
T 3BHP_B 28 AEQQKLRQEYLKGFRSSMKNTLKS 51 (60)
T ss_dssp HHHHHHHHHHHHTTHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 31
>5B2Q_A CRISPR-associated endonuclease Cas9; CRISPR-Cas9, genome engineering, HYDROLASE-RNA-DNA complex; HET: CA, EDO; 1.7A {Francisella tularensis subsp. novicida U112}
Probab=32.82 E-value=59 Score=38.33 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred CCCceEEeeccCCCC---CCCcccceEEeeCC
Q FD01542821_040 145 PSGWQVHHKIPLDDG---GTNAIDNLVLIQNS 173 (208)
Q Consensus 145 P~gw~VHHKLPLDDs---GtN~F~NLvLI~~~ 173 (208)
+..|+|+|=+|...+ |+|+|.||||....
T Consensus 965 ~~~~eIDHIIPrS~~~fg~ddS~~NlvL~~~~ 996 (1632)
T 5B2Q_A 965 GAKEELDHIIPRSHKKYGTLNDEANLICVTRG 996 (1632)
T ss_dssp ---CEEEESSCC------CCCSGGGEEEEC--
T ss_pred CCcceEEEEcchhHcccCCCCcccceEEEehh
No 32
>6GHS_A TagI restriction endonuclease; RESTRICTION ENDONUCLEASE, TYPE II, TYPE IV, CYTOSINE MODIFICATION, 5-METHYLCYTOSINE, 5MC, 5-HYDROXYMETHYLCYTOSINE, 5HMC, SRA, HNH, BBA-ME NUCLEASE; 2.92A {Thermocrispum agreste}
Probab=32.24 E-value=96 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCceEEeeccCCC--CCCCcccceEEeeCCcchhhhH
Q FD01542821_040 145 PSGWQVHHKIPLDD--GGTNAIDNLVLIQNSPYHSALS 180 (208)
Q Consensus 145 P~gw~VHHKLPLDD--sGtN~F~NLvLI~~~peH~vfT 180 (208)
+.-.++||..|+.+ +|..+.+|++++.... |..|.
T Consensus 222 ~~~l~~~hi~~~~~~~~~~~~~~n~~~lc~~~-h~~~~ 258 (311)
T 6GHS_A 222 GPYSQGAHIRPLGRKHGGPDVESNMLCLCPND-HVRFD 258 (311)
T ss_dssp SEECEEEESSCCSTTTCCCCSGGGEEEECHHH-HHHHH
T ss_pred ccceeeEEEeeCCcCCCCCCchhhEEEeCCch-HHhhh
No 33
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=31.78 E-value=32 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CC-CCCCceEEeeccCC--CCCCCcccceEEe
Q FD01542821_040 142 GK-VPSGWQVHHKIPLD--DGGTNAIDNLVLI 170 (208)
Q Consensus 142 G~-vP~gw~VHHKLPLD--DsGtN~F~NLvLI 170 (208)
|. ....+++||-.|.. .++..+++|++..
T Consensus 102 g~~~~~~~~~~Hi~~~~~~~~~~~~~~N~~~l 133 (197)
T A0A2U2GVX8_YER 102 GRFHEGQYHAGHYLTVGANPELRFNEDNCHRQ 133 (197)
T ss_pred CCccCCcceeccccCcCCChhhcCChhhcHHh
No 34
>7RWK_B SAVED domain-containing protein; DNA nuclease SAVED Sensor Effector, UNKNOWN FUNCTION; 2.39A {Asticcacaulis sp. YBE204}
Probab=31.74 E-value=70 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ceEEeeccCCCCCC-----------CcccceEEe
Q FD01542821_040 148 WQVHHKIPLDDGGT-----------NAIDNLVLI 170 (208)
Q Consensus 148 w~VHHKLPLDDsGt-----------N~F~NLvLI 170 (208)
+++||..|..+.|. ++++||+++
T Consensus 42 ~~~~hi~~~~~~g~r~~~~~~~~~~~~~~nli~l 75 (384)
T 7RWK_B 42 GYIAHIVAAEIDGPRGDPIRSPLLCDDVENLILL 75 (384)
T ss_dssp GGEEESSCSSTTSTTCCTTHHHHHTTCGGGEEEC
T ss_pred eeeeEEEeCCCCCCCCCCCCCHHHhcCcccEEEc
No 35
>4H9D_B HNH endonuclease; Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium (NESG), nicking endonuclease, HYDROLASE; HET: MSE; 2.599A {Geobacter metallireducens}
Probab=31.73 E-value=37 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 145 PSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 145 P~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+..+.++|.+|...+|.+...|++++
T Consensus 47 ~~~~~~~h~~~~~~~~~~~~~n~~~~ 72 (112)
T 4H9D_B 47 PEELTMDHLVPVVRGGKSTRGNVVPA 72 (112)
T ss_dssp GGGEEEEESSCGGGTCCCSTTTEEEE
T ss_pred cccceeceecchhhCCCCcccccHhh
No 36
>PF10045.13 ; DUF2280 ; Uncharacterized conserved protein (DUF2280)
Probab=30.52 E-value=84 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred HHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHHH
Q FD01542821_040 103 LALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKLA 140 (208)
Q Consensus 103 ~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma 140 (208)
..+|.-|.. .|+.|+++|++-|-+-+.+--..|++|.
T Consensus 57 ~kwr~lF~~-tR~~f~~~~~~IPIA~~a~RLr~Lq~~~ 93 (103)
T D5CT66_SIDLE/1 57 KRWLTIFEE-TRKAFLEDTSQVAISHRAVRLRALNRMA 93 (103)
T ss_pred HHHHHHHHH-HHHHHHHcHhhChHHhHHHHHHHHHHHH
No 37
>PF05551.15 ; zf-His_Me_endon ; Zinc-binding loop region of homing endonuclease
Probab=30.27 E-value=1.7e+02 Score=22.30 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHcC---CCCCCceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 136 LMKLATG---KVPSGWQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 136 l~~ma~G---~vP~gw~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+..+..| ..|+++.|+|+ =++...|.-+||+++
T Consensus 35 v~~~~~g~~~~~~~~~~v~H~--c~n~~c~~~~nL~~~ 70 (117)
T Q8X1S1_BEABA/1 35 VLWADGLQCNPIRNGQHISHL--CANPRCMTLGHLVVE 70 (117)
T ss_pred HHHHcCCCCCCCCCCeEEEEe--cCCCCcCChhhEEEe
No 38
>PF12639.11 ; Colicin-DNase ; DNase/tRNase domain of colicin-like bacteriocin
Probab=30.02 E-value=1.9e+02 Score=16.76 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=0.0 Template_Neff=14.500
Q ss_pred HHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCCCceEEe
Q FD01542821_040 115 PNFLKSLSDHPDALATFEPNDLMKLATGKVPSGWQVHH 152 (208)
Q Consensus 115 k~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~gw~VHH 152 (208)
..+...+..+++....|+......+..+..+.++..||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (97)
T Q3IK23_PSET1/9 38 EALKEEYENGTLNCSKFSERQLDQIKNGDKPEGFTWHH 75 (97)
T ss_pred HHHHHHHHcChhhHhhCCHHHHHHHHcCCCCCCcceEe
No 39
>5UOI_A HHH_rd1_0142; de novo design, all-alpha, helix-helix-helix, mini protein, DE NOVO PROTEIN; NMR {Escherichia coli}
Probab=29.71 E-value=91 Score=22.81 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred cCCCHHHHHHHHHHhcc
Q FD01542821_040 18 YNGNVEGFRHTAEQLGG 34 (208)
Q Consensus 18 Yn~N~egFr~TA~qLGG 34 (208)
+|-|||.-|+++|+-||
T Consensus 14 fninpeeareavekagg 30 (43)
T 5UOI_A 14 FNINPEEAREAVEKAGG 30 (43)
T ss_dssp CCCCHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHcCC
No 40
>5B2R_B CRISPR-associated endonuclease Cas9; CRISPR-Cas9, genome engineering, HYDROLASE-RNA-DNA complex; HET: K, EDO; 2.0A {Streptococcus pyogenes serotype M1}
Probab=29.58 E-value=50 Score=37.41 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred ceEEeeccCCCCCCCcccceEEeeCC
Q FD01542821_040 148 WQVHHKIPLDDGGTNAIDNLVLIQNS 173 (208)
Q Consensus 148 w~VHHKLPLDDsGtN~F~NLvLI~~~ 173 (208)
|+|+|-+|.-.+|+++++|+||....
T Consensus 840 ~eidHIiP~s~~~dds~~N~vL~~~~ 865 (1372)
T 5B2R_B 840 YDVDAIVPQSFLKDDSIDNKVLTRSD 865 (1372)
T ss_dssp SEEEESSCTTTCCCCSGGGEEEESCG
T ss_pred cccccccCcccCCCCCccceEEeeHH
No 41
>2GK1_E Beta-hexosaminidase subunit alpha; beta-hexoasaminidase A, glycosidase, Tay-Sachs disease, Sandhoff disease, NAG-thazoline, GM2 gangliodosis, HYDROLASE; HET: NAG, BMA, NGT; 3.25A {Homo sapiens} SCOP: d.92.2.1
Probab=29.49 E-value=29 Score=19.86 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred eeecCCcccC
Q FD01542821_040 199 LWPSPNGVIY 208 (208)
Q Consensus 199 lWp~P~G~IY 208 (208)
.||+|.+..+
T Consensus 1 ~wp~p~~~~~ 10 (52)
T 2GK1_E 1 LWPWPQNFQT 10 (52)
T ss_dssp CCSCCSEEEC
T ss_pred CCCCCeEEEE
No 42
>PF12392.12 ; DUF3656 ; Collagenase
Probab=29.21 E-value=1.6e+02 Score=23.38 Aligned_cols=48 Identities=13% Similarity=-0.003 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cCcchHHHHHhhcccccCcceehhcCeEEecceecCCHHHHHHHHHHh
Q FD01542821_040 62 RNPRSADELTSYLGKYKKAHVLLDDMNVSELNYMRRDRAEYLALRGQF 109 (208)
Q Consensus 62 ~~~~~leel~~ylGk~kGe~~lL~ni~V~kinYirR~r~E~~~LR~eF 109 (208)
+++...+.+..-|++..|..-.++++++..++-+--+..++..||+++
T Consensus 68 ~~~~~~~~i~~~l~k~g~t~f~~~~i~i~~~~~~fip~s~Ln~lRr~~ 115 (124)
T R6ESU2_9FIRM/3 68 SGVSFAETAENQLMKTGGTVFCVERIRIHEPEPSFASISCVNSLRREA 115 (124)
T ss_pred CCcChHHHHHHHHHhhCCCcEEEEEEEEeCCCCCccCHHHHHHHHHHH
No 43
>PF05979.16 ; DUF896 ; Bacterial protein of unknown function (DUF896)
Probab=28.95 E-value=79 Score=24.02 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHhccccCHHHHHHHhc
Q FD01542821_040 100 AEYLALRGQFNNTVRPNFLKSLSD 123 (208)
Q Consensus 100 ~E~~~LR~eFnn~VRk~FLk~ia~ 123 (208)
+|...||+++-..+|.+|-..|.+
T Consensus 24 ~Eq~~LR~~Yl~~~r~~~~~~L~~ 47 (61)
T R7FCB8_9FIRM/4 24 QEQEALRNEYRRAVVGNLRGQLDN 47 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 44
>PF13575.10 ; DUF4135 ; Domain of unknown function (DUF4135)
Probab=28.12 E-value=1.4e+02 Score=28.24 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred chHHHHHhhcccccCcceehhcCeEEecceecCCHHHHHHHHH-------HhccccCHHHHHHHhcC----------HhH
Q FD01542821_040 65 RSADELTSYLGKYKKAHVLLDDMNVSELNYMRRDRAEYLALRG-------QFNNTVRPNFLKSLSDH----------PDA 127 (208)
Q Consensus 65 ~~leel~~ylGk~kGe~~lL~ni~V~kinYirR~r~E~~~LR~-------eFnn~VRk~FLk~ia~~----------pe~ 127 (208)
..++.+..--..+.....+|.+..-..+.|+-|+...|..+-+ .-+...|..+++.|... +..
T Consensus 282 ~~~~~l~~~k~~l~~~~~~l~~~~~~~~R~v~R~T~~Y~~~l~~~~~p~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 361 (383)
T E4NFR7_KITSK/2 282 EMHDALYRIRAELADPEGPLSGFRGVWVRYIWRHTWDGYKILRASTSPLALDDGATRETVIAGALRGAVTARSGDPDRGD 361 (383)
T ss_pred HHHHHHHHCHHHHhCCCChhhhcCCCeEEEEEcCHHHHHHHHHHhcCHHHhCChHHHHHHHHHHhhhhhccccCCCCCcc
Q ss_pred HhhCCHHHHHHHHcCCCC
Q FD01542821_040 128 LATFEPNDLMKLATGKVP 145 (208)
Q Consensus 128 ~~rf~~~~l~~ma~G~vP 145 (208)
...+-++++..|.+|-+|
T Consensus 362 ~~~i~~~E~~~L~~gDIP 379 (383)
T E4NFR7_KITSK/2 362 LLEVVLAELDSFRTLDIP 379 (383)
T ss_pred hHHHHHHHHHHHHhCCCC
No 45
>8D2L_A CRISPR-associated endonuclease, Csn1 family; Cas9, AcCas9, Crispr, RNA BINDING PROTEIN, RNA BINDING PROTEIN-DNA-RNA complex; HET: GTP, MG;{Acidothermus cellulolyticus 11B}
Probab=27.91 E-value=50 Score=36.39 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred ceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 148 WQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 148 w~VHHKLPLDDsGtN~F~NLvLI 170 (208)
++++|-+|...+|+|++.|+||.
T Consensus 587 ~eidHIiP~s~~~~~s~~N~vl~ 609 (1138)
T 8D2L_A 587 SELDHIVPRTDGGSNRHENLAIT 609 (1138)
T ss_dssp CEEEESSCGGGTCCCSTTSEEEE
T ss_pred cccceeeccccCCCCchhhhhee
No 46
>4X86_A Ubiquitin-like protein 4A; tail-anchored transmembrane protein biogenesis, quality control of proteins, PROTEIN BINDING; HET: CPS, SO4; 1.85A {Homo sapiens}
Probab=25.71 E-value=1.4e+02 Score=21.76 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHHHHHhccc----cCHHHHHHHhcCHhHHhhCCHHHHHHHH
Q FD01542821_040 102 YLALRGQFNNT----VRPNFLKSLSDHPDALATFEPNDLMKLA 140 (208)
Q Consensus 102 ~~~LR~eFnn~----VRk~FLk~ia~~pe~~~rf~~~~l~~ma 140 (208)
...||+.|... |-+.|.|.+... +..++-++|++|+
T Consensus 11 ~~~L~khf~~~da~~v~~~f~k~~~~~---~~~lSLDDIErla 50 (58)
T 4X86_A 11 SKVLARHFSAADASRVLEQLQRDYERS---LSRLTLDDIERLA 50 (58)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHH
No 47
>PF01844.27 ; HNH ; HNH endonuclease
Probab=24.25 E-value=92 Score=14.65 Aligned_cols=23 Identities=48% Similarity=0.911 Sum_probs=0.0 Template_Neff=14.800
Q ss_pred ceEEeeccCCCCCCCcccceEEe
Q FD01542821_040 148 WQVHHKIPLDDGGTNAIDNLVLI 170 (208)
Q Consensus 148 w~VHHKLPLDDsGtN~F~NLvLI 170 (208)
+.++|..|...++.....|+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~ 36 (47)
T Q8CM00_THEVB/5 14 TDIHHILPKHKGGSDDLDNLVLI 36 (47)
T ss_pred eEeeeeeeccCCCCCchhhhhhh
No 48
>8T1T_D RiPP precursor (SonA); alpha-N-methyltransferase, borosin, natural products, TRANSFERASE; HET: SAM; 1.55A {Shewanella oneidensis}
Probab=23.85 E-value=1.7e+02 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred HHHHHHhcCHhHHhhCC-------------HHHHHHHHcC
Q FD01542821_040 116 NFLKSLSDHPDALATFE-------------PNDLMKLATG 142 (208)
Q Consensus 116 ~FLk~ia~~pe~~~rf~-------------~~~l~~ma~G 142 (208)
+||.+|..||+...+|. +++++-|.+|
T Consensus 13 k~L~~l~~d~~~r~~f~~dP~~~l~~~~Ls~eEr~AL~~~ 52 (75)
T 8T1T_D 13 DFFTQLGQDAQLMEDYKQNPEAVMRAHGLTDEQINAVMTG 52 (75)
T ss_dssp HHHHHHHHCHHHHHHHHHCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcC
No 49
>PF10922.12 ; T7-like_gp12 ; Bacteriophage T7-like, gene 1.2
Probab=21.86 E-value=1.5e+02 Score=24.63 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred cCccCCCHHHHHHHHHHh
Q FD01542821_040 15 GGLYNGNVEGFRHTAEQL 32 (208)
Q Consensus 15 GGvYn~N~egFr~TA~qL 32 (208)
|=+|.||.-+|+++.++|
T Consensus 2 GRlySGNLna~k~A~~rl 19 (85)
T GP12_BPT7/1-85 2 GRLYSGNLAAFKAATNKL 19 (85)
T ss_pred CCccccCHHHHHHHHHHH
No 50
>5DZT_A CylM; Cytolysin, lanthipeptide synthetase, kinase, CylM, TRANSFERASE; HET: AMP; 2.2A {Enterococcus faecalis}
Probab=21.71 E-value=3.4e+02 Score=29.07 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred EecceecCCHHHHHHHHHHh-------ccccCHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCCCceEEeeccCCCCCCC
Q FD01542821_040 90 SELNYMRRDRAEYLALRGQF-------NNTVRPNFLKSLSDHPDALATFEPNDLMKLATGKVPSGWQVHHKIPLDDGGTN 162 (208)
Q Consensus 90 ~kinYirR~r~E~~~LR~eF-------nn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~gw~VHHKLPLDDsGtN 162 (208)
.++.++-|+...|..+-+.- +..-|..+|..|...|.....+-.+++..|..|-+|-=|.--..-.|-+++.+
T Consensus 503 ~~~R~v~R~T~~Y~~ll~~~~~P~~l~~~~~r~~~l~~l~~~~~~~~~i~~~E~~~L~~gDIP~F~~~~~~~~l~~~~g~ 582 (993)
T 5DZT_A 503 LIVRNVIRPTQRYADMLEFSYHPNCFSNAIEREKVLHNMWAYPYKNKKVVHYEFSDLIDGDIPIFYNNISKTSLIASDGC 582 (993)
T ss_dssp CEEECCCSCHHHHHHHHHHTTSHHHHHCHHHHHHHHHGGGGSCBSCGGGHHHHHHHHHTTSCCCCEEETTSSCEECTTSC
T ss_pred CeEEEeeCcHHHHHHHHHHccCccccCCHHHHHHHHHHhccCCccchhhHHHHHHHHHcCCCCEEEeeCCCCeeeCCCCC
Q ss_pred cccceEEeeCCcchhhhHHHHHHHhc
Q FD01542821_040 163 AIDNLVLIQNSPYHSALSKAQSIITK 188 (208)
Q Consensus 163 ~F~NLvLI~~~peH~vfT~~Q~~iTk 188 (208)
.|.+-...+.+....+++.+
T Consensus 583 ------~i~~~~~~s~~~~~~~ri~~ 602 (993)
T 5DZT_A 583 ------LVEDFYQESALNRCLNKIND 602 (993)
T ss_dssp ------EETTCCSSCHHHHHHHHHHT
T ss_pred ------EecccccCCHHHHHHHHHHc
No 51
>2HEP_A UPF0291 protein ynzC; SR384, AUTOSTRUCTURE, Northeast Structural Genomics Consortium, PSI-1, Protein Structure Initiative, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=21.66 E-value=1.3e+02 Score=24.49 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred HHHHHHHHHHhccccCHHHHHHHhc
Q FD01542821_040 99 RAEYLALRGQFNNTVRPNFLKSLSD 123 (208)
Q Consensus 99 r~E~~~LR~eFnn~VRk~FLk~ia~ 123 (208)
.+|.+.||++|-+.+|.+|-..|.+
T Consensus 27 ~~Eq~~LR~~Yi~~~r~~~~~~L~~ 51 (85)
T 2HEP_A 27 KAEQQKLRQEYLKGFRSSMKNTLKS 51 (85)
T ss_dssp HHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
No 52
>7CEI_B PROTEIN (COLICIN E7 IMMUNITY PROTEIN); DNASE, E-GROUP COLICINS, PROTEIN-PROTEIN INTERACTION, PROTEIN RECOGNITION, IMMUNE SYSTEM; 2.3A {Escherichia coli str. K12 substr.} SCOP: d.4.1.1
Probab=21.55 E-value=4.1e+02 Score=21.39 Aligned_cols=63 Identities=22% Similarity=0.448 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCC-----------CceEEeeccCCCCCCCcccceEEeeCCcch
Q FD01542821_040 114 RPNFLKSLSDHPDALATFEPNDLMKLATGKVPS-----------GWQVHHKIPLDDGGTNAIDNLVLIQNSPYH 176 (208)
Q Consensus 114 Rk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~-----------gw~VHHKLPLDDsGtN~F~NLvLI~~~peH 176 (208)
+..|...+..+++....|+......+..|..|. .|.+||.-+++.+|...=-+-..+.....|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (206)
T 7CEI_B 126 RKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDMDNISVVTPKRH 199 (206)
T ss_dssp HHHHHHHHTTCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBTTSEEEECHHHH
T ss_pred HHHHHHHHhcCHHHHhccChhhHHHHhcCCCCCCCccccCCCeeeeeeeCCcchhcCCCeeecccceeeChhHH
No 53
>2KY4_A Phycobilisome linker polypeptide; NESG, PSI, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium, PHOTOSYNTHESIS; NMR {Nostoc sp.}
Probab=21.47 E-value=2.8e+02 Score=22.61 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCHHHHHHHHHHhccccCHHHHHHHhcCHhHHhhCCHHHHHHHHcCCCCCC---ceEEe
Q FD01542821_040 97 RDRAEYLALRGQFNNTVRPNFLKSLSDHPDALATFEPNDLMKLATGKVPSG---WQVHH 152 (208)
Q Consensus 97 R~r~E~~~LR~eFnn~VRk~FLk~ia~~pe~~~rf~~~~l~~ma~G~vP~g---w~VHH 152 (208)
++..|+......++..-+..++..|...+|...+|.. +.+|-. |.-||
T Consensus 95 ~d~~~~~~~~~~l~~~~~~~~~~~~~~s~e~~~~~~~--------~~~~~~~~~~~~~~ 145 (149)
T 2KY4_A 95 IDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFGE--------DTVPYRRFPTLEHH 145 (149)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHSSHHHHHHSCS--------SBCCCCCTTTCCCS
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHhcCHHHHHHhCC--------CCCCCcCCCCCCCC
No 54
>7RWM_C SAVED domain-containing protein; DNA nuclease SAVED Sensor Effector, UNKNOWN FUNCTION; 3.4A {Lactococcus lactis subsp. cremoris IBB477}
Probab=21.44 E-value=97 Score=28.42 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred cCCCCCCceEEeeccCCCCCC---------CcccceEEe
Q FD01542821_040 141 TGKVPSGWQVHHKIPLDDGGT---------NAIDNLVLI 170 (208)
Q Consensus 141 ~G~vP~gw~VHHKLPLDDsGt---------N~F~NLvLI 170 (208)
.+....-+++||..|..++|. ++++||+++
T Consensus 45 ~~~~~~~~~~~Hi~~~~~~g~r~~~~~~~~~~~~Nl~ll 83 (385)
T 7RWM_C 45 TGSLVNISQMAHIKAFSPKGPRYSDEENNPHQLDNLLLL 83 (385)
T ss_dssp SSBCSTTTTSCEEEEC--------CCCCSSSSTTSEEEE
T ss_pred CCCeeeeeEEEeeeecCCCCCCCCCCcCCCCchhhhhcc