Query FD01845409_04161 Protein RhsD
Match_columns 154
No_of_seqs 9 out of 15
Neff 2.78915
Searched_HMMs 86581
Date Tue Feb 27 21:59:35 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7515534.hhr -oa3m ../results/7515534.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15534.10 ; Ntox35 ; Bacteria 32.8 1.4E+02 0.0017 21.7 3.6 45 104-152 31-75 (76)
2 PF18534.5 ; HBD ; Helical bund 29.8 20 0.00024 27.7 -1.1 16 105-120 58-73 (85)
3 PF04369.17 ; Lactococcin ; Lac 29.4 70 0.00081 22.8 1.6 19 105-123 12-30 (60)
4 5H23_B Capsid Protein; Chikung 28.6 1.6E+02 0.0018 24.7 3.7 24 124-147 113-138 (156)
5 2M2K_A HasB protein; HasB CTD, 27.7 1.4E+02 0.0016 22.0 2.9 44 103-148 35-80 (131)
6 PF16446.9 ; DUF5043 ; Domain o 26.9 2.4E+02 0.0027 23.5 4.3 27 102-146 81-108 (155)
7 1VCC_A DNA TOPOISOMERASE I; DN 26.9 1.1E+02 0.0013 23.3 2.3 48 83-130 6-68 (77)
8 PF09318.14 ; Glyco_trans_A_1 ; 26.0 2E+02 0.0023 22.5 3.6 30 115-144 121-150 (185)
9 PF00944.23 ; Peptidase_S3 ; Al 24.6 2.1E+02 0.0024 24.2 3.6 24 124-147 113-138 (157)
10 5NZP_B D-3-phosphoglycerate de 22.9 1.3E+02 0.0015 21.7 2.0 33 102-134 24-56 (204)
11 PF21082.1 ; MS_channel_3rd ; M 22.6 3E+02 0.0034 16.5 3.3 35 102-136 24-58 (89)
12 PF07872.15 ; DUF1659 ; Protein 22.5 1E+02 0.0012 19.9 1.2 13 119-131 8-20 (43)
13 4MP0_B Serine/threonine-protei 21.5 2E+02 0.0023 19.9 2.5 25 126-150 14-39 (44)
14 4BY2_A ANASTRAL SPINDLE 2, SAS 20.4 72 0.00083 26.4 0.3 55 83-137 176-250 (252)
No 1
>PF15534.10 ; Ntox35 ; Bacterial toxin 35
Probab=32.77 E-value=1.4e+02 Score=21.67 Aligned_cols=45 Identities=16% Similarity=0.092 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred HHHHHhcccCCCeeEEecCccccCCCeEEEEEEEcCCCceEEEEecCCc
Q FD01845409_041 104 VLESLRKVESGKWSKVYKDGYDASGRRVSIHYFESQSGRVFNVKVKPEW 152 (154)
Q Consensus 104 ~Le~LRkve~GkW~KVYkDGfda~G~rVSiHYfqsqsg~VfnVKvk~~W 152 (154)
....+|.=.......+|+--+...|+.|.|.|.. ..|++ |+...|
T Consensus 31 i~~vm~~G~~~~y~~~~~k~~~~~G~~v~Vt~~~-~~G~i---~is~aW 75 (76)
T M1MGK3_9CLOT/7 31 FVNIINENKSKLIQGNNQLRTVINGYEVEIKAFV-KDGKV---ASIDGQ 75 (76)
T ss_pred HHHHHhcCCceeeCceeEEEEEECCEEEEEEEEe-eCCEE---EEEecc
No 2
>PF18534.5 ; HBD ; Helical bundle domain
Probab=29.79 E-value=20 Score=27.70 Aligned_cols=16 Identities=13% Similarity=0.663 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHhcccCCCeeEEe
Q FD01845409_041 105 LESLRKVESGKWSKVY 120 (154)
Q Consensus 105 Le~LRkve~GkW~KVY 120 (154)
++.||+.+|.+|.++|
T Consensus 58 v~~irem~P~~wE~~y 73 (85)
T A0A0W0VPR2_9GA 58 VNKIQEMDPKDWEKLL 73 (85)
T ss_pred HHHHHHhCChHHHHHH
No 3
>PF04369.17 ; Lactococcin ; Lactococcin-like family
Probab=29.42 E-value=70 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred HHHHhcccCCCeeEEecCc
Q FD01845409_041 105 LESLRKVESGKWSKVYKDG 123 (154)
Q Consensus 105 Le~LRkve~GkW~KVYkDG 123 (154)
.|+|.++..|+|...+..|
T Consensus 12 ~eeL~~i~GG~~~~~~~~g 30 (60)
T A0A1V0NWM2_LAC 12 DEELSEANGGKLTFIQSTA 30 (60)
T ss_pred HHHHHHhcCCccceEEeeC
No 4
>5H23_B Capsid Protein; Chikungunya virus, capsid protein, VIRAL PROTEIN; HET: EDO, BOG, GOL; 2.2A {Chikungunya virus} SCOP: b.47.1.3
Probab=28.61 E-value=1.6e+02 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred cccCCCeEEEEEEE--cCCCceEEEE
Q FD01845409_041 124 YDASGRRVSIHYFE--SQSGRVFNVK 147 (154)
Q Consensus 124 fda~G~rVSiHYfq--sqsg~VfnVK 147 (154)
||+.|+.|-|+|-. ...|..|.||
T Consensus 113 ~d~~G~VVGIv~a~~~~~~g~~~a~~ 138 (156)
T 5H23_B 113 FDNKGRVVAIVLGGANEGARTALSVV 138 (156)
T ss_dssp ECTTSCEEEEEEEEEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEeeeCCCCceeEEEE
No 5
>2M2K_A HasB protein; HasB CTD, tonb-like protein, hemophore, HEME acquisition system, transport protein; NMR {Serratia marcescens}
Probab=27.73 E-value=1.4e+02 Score=21.98 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred HHHHHHhcccCCCeeEEecCccccCCC--eEEEEEEEcCCCceEEEEe
Q FD01845409_041 103 EVLESLRKVESGKWSKVYKDGYDASGR--RVSIHYFESQSGRVFNVKV 148 (154)
Q Consensus 103 ~~Le~LRkve~GkW~KVYkDGfda~G~--rVSiHYfqsqsg~VfnVKv 148 (154)
..+..|++.....|. |+.+.-..|. +|.|++.=..+|+|.++++
T Consensus 35 ~~~~~i~~~i~~~~~--~p~~~~~~~~~g~v~v~~~v~~~G~v~~~~i 80 (131)
T 2M2K_A 35 NWRSRISGRLNRFKR--YPKDALRLKRQGVGQVRFTLDRQGHVLAVTL 80 (131)
T ss_dssp CHHHHHHHHHHHTCC--CCHHHHHTSCCEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHhcc--CcHHHHHcCCCeEEEEEEEECCCCcEEEEEE
No 6
>PF16446.9 ; DUF5043 ; Domain of unknown function (DUF5043)
Probab=26.93 E-value=2.4e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHhcccCCCeeEEecCccccCCCeEEEEEEE-cCCCceEEE
Q FD01845409_041 102 REVLESLRKVESGKWSKVYKDGYDASGRRVSIHYFE-SQSGRVFNV 146 (154)
Q Consensus 102 ~~~Le~LRkve~GkW~KVYkDGfda~G~rVSiHYfq-sqsg~VfnV 146 (154)
++++++|+ |..+.|.++- ++||+|..|
T Consensus 81 ~~e~~~lk------------------~~~l~I~~~i~~~tGki~EV 108 (155)
T R7EI70_9BACE/3 81 KAMADELG------------------KREFTITMLLSPDTGKVMEV 108 (155)
T ss_pred HHHHHHhC------------------CCcEEEEEEEcCCCCcEEEE
No 7
>1VCC_A DNA TOPOISOMERASE I; DNA BINDING; 1.6A {Vaccinia virus} SCOP: d.121.1.1
Probab=26.85 E-value=1.1e+02 Score=23.30 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCCchhhcCCCceEeeecCHHHHHHHhcc-cCCCeeEEecC--------------ccccCCCe
Q FD01845409_041 83 YPKGFRTSQNGTVKNVVKNREVLESLRKV-ESGKWSKVYKD--------------GYDASGRR 130 (154)
Q Consensus 83 yP~Gfr~~qNGt~k~~i~N~~~Le~LRkv-e~GkW~KVYkD--------------Gfda~G~r 130 (154)
|-.+|.-......+..|.+.++++.|+.+ .|-+|+.|.-- |+|+.|++
T Consensus 6 ~~~gf~y~d~~g~~~~i~d~~~~~ri~~L~IPPaw~dV~i~~~~~~~~~~~iqa~G~D~kGRk 68 (77)
T 1VCC_A 6 YKDGKLFTDNNFLNPVSDDNPAYEVLQHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRR 68 (77)
T ss_dssp EETTEEESSTTSCSBCCTTCTHHHHHHHCCCCTTCEEEEEECCCHHHHTTSEEEEEECTTSCE
T ss_pred ccCceEEECCCCCCCCCCChHHHHHHhcCCCCCcCCCeEEecCChHHhhcCeeEEEEcCCCCc
No 8
>PF09318.14 ; Glyco_trans_A_1 ; Glycosyl transferase 1 domain A
Probab=26.04 E-value=2e+02 Score=22.45 Aligned_cols=30 Identities=20% Similarity=0.569 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CeeEEecCccccCCCeEEEEEEEcCCCceE
Q FD01845409_041 115 KWSKVYKDGYDASGRRVSIHYFESQSGRVF 144 (154)
Q Consensus 115 kW~KVYkDGfda~G~rVSiHYfqsqsg~Vf 144 (154)
.+..+..|=||..|.+.++.||...+|++.
T Consensus 121 ~~~~~~~~~yd~~G~~~~~~~~~~~~~~~~ 150 (185)
T A8FI15_BACP2/4 121 NQQLEKREEYNSQGQLHKVSYFSQETGKVY 150 (185)
T ss_pred CCcEEEEEEECCCCCEEEEEEEeCCCCcEE
No 9
>PF00944.23 ; Peptidase_S3 ; Alphavirus core protein
Probab=24.56 E-value=2.1e+02 Score=24.21 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred cccCCCeEEEEEEE--cCCCceEEEE
Q FD01845409_041 124 YDASGRRVSIHYFE--SQSGRVFNVK 147 (154)
Q Consensus 124 fda~G~rVSiHYfq--sqsg~VfnVK 147 (154)
||..|+.|-|++=. ...|..|.||
T Consensus 113 ~d~~G~vvGIv~~~~~~~~g~~~a~~ 138 (157)
T POLS_SFV/112-2 113 FDNKGRVVAIVLGGANEGSRTALSVV 138 (157)
T ss_pred ECCCCCEEEEEEeeeCCCCceeEEEE
No 10
>5NZP_B D-3-phosphoglycerate dehydrogenase; dehydrogenase, serine metabolism, FBDD, oxidoreductase; HET: 9EW; 1.3A {Homo sapiens}
Probab=22.89 E-value=1.3e+02 Score=21.72 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHhcccCCCeeEEecCccccCCCeEEEE
Q FD01845409_041 102 REVLESLRKVESGKWSKVYKDGYDASGRRVSIH 134 (154)
Q Consensus 102 ~~~Le~LRkve~GkW~KVYkDGfda~G~rVSiH 134 (154)
+...+..+.+..|.|.+.+.-|++..+.+|.|.
T Consensus 24 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii 56 (204)
T 5NZP_B 24 RQIPQATASMKDGKWERKKFMGTELNGKTLGIL 56 (204)
T ss_dssp HTHHHHHHHHHTTCCCTTTTCBCCCTTCEEEEE
T ss_pred ccHHHHHHHHHcCCCcchhccCcccCCCEEEEE
No 11
>PF21082.1 ; MS_channel_3rd ; Mechanosensitive ion channel MscS, C-terminal
Probab=22.61 E-value=3e+02 Score=16.54 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred HHHHHHHhcccCCCeeEEecCccccCCCeEEEEEE
Q FD01845409_041 102 REVLESLRKVESGKWSKVYKDGYDASGRRVSIHYF 136 (154)
Q Consensus 102 ~~~Le~LRkve~GkW~KVYkDGfda~G~rVSiHYf 136 (154)
.+.+.+...+.+..+..++-.+++..+-.+.|+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (89)
T Y812_AQUAE/265 24 RELLKEHPGVAKDEKFYVYFENYGDSSLNILIQYY 58 (89)
T ss_pred HHHHHhCCCcCCCCCeEEEEEeeCCccEEEEEEEE
No 12
>PF07872.15 ; DUF1659 ; Protein of unknown function (DUF1659)
Probab=22.52 E-value=1e+02 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred EecCccccCCCeE
Q FD01845409_041 119 VYKDGYDASGRRV 131 (154)
Q Consensus 119 VYkDGfda~G~rV 131 (154)
+|.+|.|+.|+.|
T Consensus 8 ~~~~G~d~~Gk~i 20 (43)
T A8MJS8_ALKOO/8 8 RFVEGVDGEGKEK 20 (43)
T ss_pred EEEEccCCCCCEE
No 13
>4MP0_B Serine/threonine-protein phosphatase 1 regulatory subunit 10; Serine/threonine phosphatase, Nucleus, HYDROLASE; HET: PO4, GOL; 2.1003A {Homo sapiens}
Probab=21.52 E-value=2e+02 Score=19.93 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred cCCCeEEEEEEE-cCCCceEEEEecC
Q FD01845409_041 126 ASGRRVSIHYFE-SQSGRVFNVKVKP 150 (154)
Q Consensus 126 a~G~rVSiHYfq-sqsg~VfnVKvk~ 150 (154)
..++.+.||||+ ..+-||---|++.
T Consensus 14 ~e~~L~~~~yFelde~ERvNVnk~k~ 39 (44)
T 4MP0_B 14 EEGKLREYFYFELDETERVNVNKIKD 39 (44)
T ss_dssp CGGGSEEEEEECCCTTSCCCTTC---
T ss_pred CcCCeEEEEEEeCCCCCcccccccCc
No 14
>4BY2_A ANASTRAL SPINDLE 2, SAS 4; STRUCTURAL PROTEIN, CPAP, STIL, MICROCEPHALY, MCPH, CENTRIOLE, TCP DOMAIN, EXTENDED BETA SHEET; 2.57A {DROSOPHILA MELANOGASTER}
Probab=20.37 E-value=72 Score=26.41 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCCc--hhhcCCCceEeeecCHHHHHH-----HhcccCCCeeEEecCc-------------cccCCCeEEEEEEE
Q FD01845409_041 83 YPKG--FRTSQNGTVKNVVKNREVLES-----LRKVESGKWSKVYKDG-------------YDASGRRVSIHYFE 137 (154)
Q Consensus 83 yP~G--fr~~qNGt~k~~i~N~~~Le~-----LRkve~GkW~KVYkDG-------------fda~G~rVSiHYfq 137 (154)
||.| .....+|.....-.|...... .+....|.|.-+|.|| +|+.|+++.+-..+
T Consensus 176 ~~dG~~~~~~~~G~~~~~~p~G~~~~~~~g~~~~~~~dG~~~~~~~~G~~~~~y~~G~~~~~~~~G~~~~~~~~~ 250 (252)
T 4BY2_A 176 YADGTHLVQLRNGDKILNLPNGQKEIHTKLNKRREYPDGTVKLVYPDGSQETRYSNGRVRLKDKDGKLIMDTDYA 250 (252)
T ss_dssp CTTSCEEEEETTSCEEEECTTSCEEEECC----------------------------------------------
T ss_pred cCCCCEEEEeeCCcEEEECCCCCEEEEeCCceEEecCCCeEEEEeCCCCEEEEeCCCcEEEECCCCCEEEeeccc