Query FD01876784_04369 hypothetical protein
Match_columns 175
No_of_seqs 111 out of 141
Neff 5.0336
Searched_HMMs 86581
Date Tue Feb 27 22:45:55 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7973959.hhr -oa3m ../results/7973959.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1TZP_B Penicillin-insensitive 99.4 2.5E-12 2.9E-17 110.7 7.7 140 14-175 44-198 (255)
2 PF03411.17 ; Peptidase_M74 ; P 99.3 3.3E-11 3.8E-16 102.9 9.2 139 14-175 28-182 (234)
3 PF06904.16 ; Extensin-like_C ; 77.8 16 0.00018 30.5 6.2 80 42-170 80-162 (171)
4 4O2X_A Maltose-binding peripla 63.4 23 0.00027 32.3 4.5 49 97-169 458-507 (507)
5 5ZHF_B D-alanyl-D-alanine carb 58.5 17 0.00019 30.5 2.6 93 54-167 134-228 (228)
6 6TYI_Y Biopolymer transport pr 56.5 54 0.00063 26.3 5.0 56 95-169 108-163 (163)
7 4FCZ_A Toluene-tolerance prote 38.3 1.2E+02 0.0014 25.7 4.7 113 25-169 101-223 (223)
8 8ODT_F Tol-Pal system protein 36.1 2.1E+02 0.0025 24.0 5.7 73 95-167 113-188 (189)
9 3GMG_B Uncharacterized protein 34.6 2E+02 0.0024 24.4 5.3 118 7-169 37-170 (170)
10 2HZQ_A Apolipoprotein D; lipoc 31.7 1.6E+02 0.0019 22.4 4.0 41 95-167 131-173 (174)
11 PF19659.3 ; DUF6162 ; Family o 30.4 80 0.00093 28.8 2.5 32 107-169 207-238 (240)
12 2AVX_A Regulatory protein sdiA 29.1 1.9E+02 0.0022 21.2 4.0 97 23-119 24-120 (171)
13 PF18979.4 ; DUF5715 ; Family o 28.4 3.4E+02 0.004 22.4 5.6 61 10-70 40-119 (173)
14 4U0O_B Lipoyl synthase 2; radi 27.9 5.6E+02 0.0064 21.5 7.4 81 22-167 216-296 (296)
15 PF01085.22 ; HH_signal ; Hedge 26.1 3.2E+02 0.0037 21.9 4.9 68 1-69 55-127 (162)
16 7E8R_A EcoT38I restriction end 25.5 7E+02 0.0081 23.2 7.6 77 23-118 196-272 (351)
17 5QU5_B Cytoplasmic protein NCK 24.6 75 0.00086 20.7 1.0 16 159-174 2-17 (99)
18 3D1M_A Sonic hedgehog protein; 24.3 5.8E+02 0.0067 20.5 6.7 68 1-69 57-129 (168)
19 5ZVL_A Glutaredoxin; glutarred 23.6 65 0.00075 24.1 0.6 12 164-175 2-13 (171)
20 6T6E_A Pol protein; HIV, integ 22.9 67 0.00078 23.5 0.5 11 163-173 2-12 (59)
21 4XFE_A TRAP dicarboxylate tran 22.9 19 0.00022 30.6 -2.6 35 135-169 305-341 (341)
22 6QJ2_A Smc4; condensin, SMC co 22.8 1.1E+02 0.0012 26.6 1.8 78 92-169 322-402 (403)
23 2IUT_B DNA TRANSLOCASE FTSK; N 22.6 1.5E+02 0.0018 28.3 2.9 47 96-169 528-574 (574)
24 6Z6Z_A Neutrophil gelatinase-a 22.3 3.7E+02 0.0043 20.7 4.5 44 95-167 143-187 (187)
25 PF04015.16 ; DUF362 ; Domain o 22.1 3.8E+02 0.0044 22.2 4.8 41 8-48 1-44 (203)
26 7PK5_C Cyclic di-GMP phosphodi 21.8 1.3E+02 0.0015 25.9 2.2 140 9-169 229-369 (369)
27 7V9O_A Alanine aminopeptidase; 21.7 86 0.00099 31.4 1.2 18 158-175 3-20 (884)
28 5Y2W_A Rubisco operon transcri 21.5 77 0.00089 25.2 0.7 12 163-174 2-13 (234)
29 7QFL_A S-layer protein; s-laye 21.0 97 0.0011 25.8 1.1 18 158-175 1-18 (132)
30 PF11080.12 ; GhoS ; Endoribonu 20.7 3.5E+02 0.004 19.7 3.9 44 80-160 5-48 (87)
No 1
>1TZP_B Penicillin-insensitive murein endopeptidase; LAS enzyme, metallopeptidase, peptidoglycan hydrolase, Hydrolase; HET: SO4; 1.4A {Escherichia coli} SCOP: d.65.1.3
Probab=99.37 E-value=2.5e-12 Score=110.68 Aligned_cols=140 Identities=11% Similarity=0.020 Sum_probs=96.2 Template_Neff=7.600
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhC---CCcEEEcccccCCCCCC-CCCcCCCCCceeeeeeeeeCCCCCce--------e
Q FD01876784_043 14 INTERPYANDVTTASLLGAMLNTG---YTDFNYNGGSNERGISP-APGSSHKNGMNLDMRYLRKDKSGDGI--------H 81 (175)
Q Consensus 14 ~~t~R~Y~np~~~AallGAl~e~g---~~dv~~~gfS~~dGss~-~PS~SH~NG~~~D~rYl~~d~~~~~~--------~ 81 (175)
....|.|..++++..|..|..++. ...|.|+++|...|+.+ .|+.||+||.++||+|..++...... .
T Consensus 44 ~~r~~~ygt~~li~~L~~~a~~~~~~~~~~l~igDiS~~~GG~~~~~H~SHq~G~DVDI~~~~~~~~~~~~~~~~~~~~~ 123 (255)
T 1TZP_B 44 TDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPAGGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALD 123 (255)
T ss_dssp GGGCCCEECHHHHHHHHHHHHHHHHTTSCCEEECCCBCBTBCCCSSSCSCCCSSCEEEEESCCCSSCCCHHHHHSCCCCC
T ss_pred cccCccccCHHHHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcCCCCCchhcCCceEEeeeeCCCCCCChhhcCCCcccc
Confidence 345689999999999999988874 24599999999999997 68999999999999999987653211 0
Q ss_pred -ccCCCCCCCCCCccccCHHHHHHHHHHHHHcCCce--eeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccc
Q FD01876784_043 82 -LDLNGETGNPCGWKGLDIERQNKFIEELKRFGWGT--ILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNI 158 (175)
Q Consensus 82 -l~~~~~~~~~~~~~~~D~~rq~~fi~aL~kFG~~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 158 (175)
+..+...... .++| ++++.||++|.+.|-.+ |+...+...++..+. ....+|...
T Consensus 124 ~~~~~g~~~~~---~~wd-~~~~~Li~~l~~~~~V~~Ifvd~~ik~~L~~~a~------------------~~~~~l~~v 181 (255)
T 1TZP_B 124 LVSRDGKHVVS---TLWK-PEIFSLIKLAAQDKDVTRIFVNPAIKQQLCLDAG------------------TDRDWLRKV 181 (255)
T ss_dssp CBCTTSSSBCT---TTCC-HHHHHHHHHHHTSTTEEEEEECHHHHHHHHHHCT------------------TCCGGGGGE
T ss_pred ccCCCCCccch---hhcc-HHHHHHHHHHhhCCCeeEEEECHHHHHHHHHhcC------------------CCHHHHHHh
Confidence 1100000011 3455 78899999999998666 444444332221110 012445555
Q ss_pred cccCCCCceeeccccCC
Q FD01876784_043 159 IHAINHNHHTHFQGYNP 175 (175)
Q Consensus 159 ~~~~~H~~HlHiqg~~p 175 (175)
.+...|++|+|++..+|
T Consensus 182 ~~~~gH~dHfHVR~~cp 198 (255)
T 1TZP_B 182 RPWFQHRAHMHVRLRCP 198 (255)
T ss_dssp EECSSCSSEEEEEECCC
T ss_pred cccccccceEeEEEeCC
Confidence 56669999999997765
No 2
>PF03411.17 ; Peptidase_M74 ; Penicillin-insensitive murein endopeptidase
Probab=99.28 E-value=3.3e-11 Score=102.86 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=114.0 Template_Neff=7.400
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhC---CCcEEEcccccCCCCCC-CCCcCCCCCceeeeeeeeeCCCC-Cc--------e
Q FD01876784_043 14 INTERPYANDVTTASLLGAMLNTG---YTDFNYNGGSNERGISP-APGSSHKNGMNLDMRYLRKDKSG-DG--------I 80 (175)
Q Consensus 14 ~~t~R~Y~np~~~AallGAl~e~g---~~dv~~~gfS~~dGss~-~PS~SH~NG~~~D~rYl~~d~~~-~~--------~ 80 (175)
+.+++.||++++|++|+.+++++. ..+|.|||+|.++||++ .+|.|||+|+||||+|+..++.. +. .
T Consensus 28 ~~r~r~yG~p~li~~l~~~~~~~~~~~~~~l~IGDiS~~~GG~~~~gH~SHq~GlDvDI~~~~~~~~~~~~~~~~~~~~~ 107 (234)
T Q0BS55_GRABC/3 28 RDRSSFWSAPVTINGVKTLATRLHAQGLPDLYVGDMSAPHGGRLPGGHGSHQNGLDVDLYLDLTPRPALTPDERNVLEPP 107 (234)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCcccCCceEEEEeecCCCCCCCHhHhccCCCC
Confidence 456799999999999999999997 45899999999999998 79999999999999999886431 10 0
Q ss_pred e-ccCCCCCCCCCCccccCHHHHHHHHHHHHHcCCce--eeeeeccccCCCCCCCcccchhhhhcccCCCCCCCcccccc
Q FD01876784_043 81 H-LDLNGETGNPCGWKGLDIERQNKFIEELKRFGWGT--ILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKN 157 (175)
Q Consensus 81 ~-l~~~~~~~~~~~~~~~D~~rq~~fi~aL~kFG~~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 157 (175)
. ++.++..++ ..|+ ++++.||+.+.+.+.|+ |+++.+++.||.++. .++.|+.+
T Consensus 108 ~~~~~~~~~~d----~~~~-~~~~~ll~~~a~~~~V~rIfvnp~ik~~l~~~~~------------------~~~~~l~k 164 (234)
T Q0BS55_GRABC/3 108 SMVSADGNSLS----PAWT-QDTVTLLHMAATLPNVDRVLVNPVIKRALCEQVS------------------GDRSWLHL 164 (234)
T ss_pred ccccCCCCccC----cccC-HHHHHHHHHHhhCCCeeEEEcCHHHHHHHHHHhh------------------CChhHHhh
Confidence 1 121221222 3487 78889999999999888 999999999998764 34678889
Q ss_pred ccccCCCCceeeccccCC
Q FD01876784_043 158 IIHAINHNHHTHFQGYNP 175 (175)
Q Consensus 158 ~~~~~~H~~HlHiqg~~p 175 (175)
++.+.+|++||||||.||
T Consensus 165 ir~~~gHddHfHVRl~cp 182 (234)
T Q0BS55_GRABC/3 165 IRPWWGHKAHMHVRFRCP 182 (234)
T ss_pred cccccccCceEeEEEeCC
Confidence 999999999999999997
No 3
>PF06904.16 ; Extensin-like_C ; Extensin-like protein C-terminus
Probab=77.79 E-value=16 Score=30.50 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred EEcccccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCCCCCCCccccCHHHHHHHHHHHHH---cCCceee
Q FD01876784_043 42 NYNGGSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGETGNPCGWKGLDIERQNKFIEELKR---FGWGTIL 118 (175)
Q Consensus 42 ~~~gfS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~~~~~~~~~~D~~rq~~fi~aL~k---FG~~~~l 118 (175)
.+++++...-.....-+.|.-|..+|+.-+..+. +..+.+.. .=-+.+...+|..++.. -.|..+|
T Consensus 80 ~~g~y~cR~~~g~~~~S~Ha~G~AiDi~~f~~~~-G~~~~v~~----------~w~~~~~~~~~l~~~~~~~~~~F~~VL 148 (171)
T S6AVK8_PSERE/6 80 HLGSFACRSIGGSQRRSQHASANALDIAGFRLAD-GRRISVAR----------HWDGEGAEARFLRLVRDAACTHFSVTL 148 (171)
T ss_pred eccceecccCCCCCCcccccceeeEEEEEEEeCC-CCEEEeee----------cCCCCchHHHHHHHHHHHHccccCCcc
Q ss_pred eeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCceeec
Q FD01876784_043 119 GWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHHTHF 170 (175)
Q Consensus 119 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~HlHi 170 (175)
+..+.. .|.||+|+
T Consensus 149 gp~~~~--------------------------------------~H~dH~H~ 162 (171)
T S6AVK8_PSERE/6 149 GPDYNA--------------------------------------AHRDHFHV 162 (171)
T ss_pred CCCCCc--------------------------------------cccCeeeE
No 4
>4O2X_A Maltose-binding periplasmic protein, ATP-dependent Clp protease adaptor protein ClpS containing protein chimeric construct; ClpS, Proteolysis, Clp ATPase Protease, APICOPLAST, transport protein; 2.7A {Escherichia coli}
Probab=63.41 E-value=23 Score=32.27 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred cCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCC-ccccccccccCCCCceee
Q FD01876784_043 97 LDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQ-RPVLKNIIHAINHNHHTH 169 (175)
Q Consensus 97 ~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~H~~HlH 169 (175)
.+.+.-..+...|..+|..--+...-... .. .+++|+-+|+.+||||-|
T Consensus 458 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 507 (507)
T 4O2X_A 458 TWKSKAEKYCQELQQNGLTVSIIHESQLK------------------------DKQKKLVPRGSHHHHHHHHHH 507 (507)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEECCC------------------------------------------------
T ss_pred ecHHHHHHHHHHHHHCCCEEEEEEccccc------------------------ccceeecCCCccCCCCCCCCC
No 5
>5ZHF_B D-alanyl-D-alanine carboxypeptidase; Vancomycin resistance, peptidase, metallopeptidase family M15, HYDROLASE; HET: PG4, MSE, GOL; 1.65A {Enterococcus faecalis V583}
Probab=58.53 E-value=17 Score=30.52 Aligned_cols=93 Identities=16% Similarity=0.033 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCCCCCCCccccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCc
Q FD01876784_043 54 PAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGETGNPCGWKGLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGR 133 (175)
Q Consensus 54 ~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~~~~~~~~~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~ 133 (175)
+.....|.-|..+|+..... ...+......+.+.+.++||...+.........-.....
T Consensus 134 ~pg~S~H~~G~AvDi~~~~~---------------------~~~~~~~~~~L~~~a~~~Gf~~~~~~~~~~~~~~~~E~W 192 (228)
T 5ZHF_B 134 VPGTSEHQLGLAVDINADGI---------------------HSTGNEVYRWLDENSYRFGFIRRYPPDKTEITGVSNEPW 192 (228)
T ss_dssp CTTSCGGGGTCEEEEEECSS---------------------SCCHHHHHHHHHHHGGGGTEEECSCGGGHHHHSCCCCTT
T ss_pred CCCCCCCCCeeEEEEEcCCC---------------------CcCCCHHHHHHHHHHHHhCeEEcCCCCccCccCCCCCCc
Q ss_pred ccchhhhhcccCCCCCCC--ccccccccccCCCCce
Q FD01876784_043 134 AWDEWYAVWQSEHPGETQ--RPVLKNIIHAINHNHH 167 (175)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~H~~H 167 (175)
-+.-.+..+-......+. ...|.......+||||
T Consensus 193 H~~y~g~~~a~~~~~~~~~~e~~~~~~~~~~~~~~~ 228 (228)
T 5ZHF_B 193 HYRYVGIEAATKIYHQGLCLEEYLNTEKLEHHHHHH 228 (228)
T ss_dssp EEEECCHHHHHHHHHHTCCHHHHHHHCC--------
T ss_pred EEEEcCHHHHHHHHHcCCCHHHHHHhhhhccccCCC
No 6
>6TYI_Y Biopolymer transport protein ExbD; molecular motor, Ton system, membrane protein, TRANSPORT PROTEIN; HET: PEV, PGT;{Escherichia coli (strain K12)}
Probab=56.50 E-value=54 Score=26.27 Aligned_cols=56 Identities=23% Similarity=0.137 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred cccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCceee
Q FD01876784_043 95 KGLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHHTH 169 (175)
Q Consensus 95 ~~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~HlH 169 (175)
.+.....-..+++++.+-|+..+.-..........+..+ ..-....|..+||+|-|
T Consensus 108 ~~~~~~~v~~v~~~~~~~g~~~v~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 163 (163)
T 6TYI_Y 108 KTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAKENLYF-------------------QGNAGSGHHHHHHHHHH 163 (163)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHCCCeeEEEecccchhhhccccc-------------------cCCCCCCCCCCCCCCCC
No 7
>4FCZ_A Toluene-tolerance protein; Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSPORT PROTEIN; HET: MSE; 2.604A {Pseudomonas putida}
Probab=38.29 E-value=1.2e+02 Score=25.74 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHHHHHhCCCcEEEcccccCCCCCCCC---CcCCCCCceeeeeeeeeCCCCC----ceeccCCCCCCCCCCcccc
Q FD01876784_043 25 TTASLLGAMLNTGYTDFNYNGGSNERGISPAP---GSSHKNGMNLDMRYLRKDKSGD----GIHLDLNGETGNPCGWKGL 97 (175)
Q Consensus 25 ~~AallGAl~e~g~~dv~~~gfS~~dGss~~P---S~SH~NG~~~D~rYl~~d~~~~----~~~l~~~~~~~~~~~~~~~ 97 (175)
.......++....-..|.+.+....+|+. .- ...-.||..+.+.|.-....+. .+.+.. -.+
T Consensus 101 l~~~y~~~l~~~~~~~i~v~~~~~~~~~~-~~V~~~i~~~~~~~~~v~~~l~~~~g~WkI~Dv~v~G----------isl 169 (223)
T 4FCZ_A 101 LMQFYGNALLEYNNQGITVDPAKADDGKR-ASVGMKVTGNNGAVYPVQYTLENIGGEWKVRNVIVNG----------INI 169 (223)
T ss_dssp HHHHHHHHHHTCCCCCEEECCCCCCCSSE-EEECEEEECSSSCEEEEEEEEEESSSCEEEEEEEETT----------EEH
T ss_pred HHHHHHHHHHhhcCccEEEecCCCCCCCe-EEEEEEEEcCCCCEEEEEEEEEEeCCeEEEEEEEEeC----------cch
Q ss_pred CHHHHHHHHHHHHHcC--CceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCC-ccccccccccCCCCceee
Q FD01876784_043 98 DIERQNKFIEELKRFG--WGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQ-RPVLKNIIHAINHNHHTH 169 (175)
Q Consensus 98 D~~rq~~fi~aL~kFG--~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~H~~HlH 169 (175)
=......|-..|.+-| +..++..=- ....+......+. .+.+|. .||||-|
T Consensus 170 ~~~~r~~f~~~i~~~g~~~~~li~~L~----------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 223 (223)
T 4FCZ_A 170 GKLFRDQFADAMQRNGNDLDKTIDGWA----------------GEVAKAKQAADNSPEKSVKL-----EHHHHHH 223 (223)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHTTCH----------------HHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH----------------HHHHHHHHhhcCChhhcccc-----ccCCCCC
No 8
>8ODT_F Tol-Pal system protein TolR; TolQ, TolR, Tol-Pal, complex, inner membrane, MEMBRANE PROTEIN;{Escherichia coli K-12}
Probab=36.14 E-value=2.1e+02 Score=24.02 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred cccCHHHHHHHHHHHHHcCCce---eeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCce
Q FD01876784_043 95 KGLDIERQNKFIEELKRFGWGT---ILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHH 167 (175)
Q Consensus 95 ~~~D~~rq~~fi~aL~kFG~~~---~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~H 167 (175)
.+...+.-.+.++++.+-|+.+ ..................+.+--....+.+.+.+-...-.+.+..++||||
T Consensus 113 ~~v~~~~v~~v~~~~~~aG~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T 8ODT_F 113 KDVPYDEIIKALNLLHSAGVKSVGLMTQPILEENLYFQGQFGSWSHPQFEKGGGSGGGSGGGSWSHPQFEKHHHHH 188 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEcCcchhhccccCCCCCCccCcccccCCCCCCCCCCccCCCccccccCCCC
No 9
>3GMG_B Uncharacterized protein Rv1825/MT1873; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, Cell membrane, Membrane, Transmembrane, PSI-2, Protein Structure Initiative, New York SGX Research; 1.5A {Mycobacterium tuberculosis}
Probab=34.63 E-value=2e+02 Score=24.43 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CeeEEeecCCCcccCCHHHHHHHHHHHHHhCCCcEEEcc------cccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCce
Q FD01876784_043 7 DVQFELAINTERPYANDVTTASLLGAMLNTGYTDFNYNG------GSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGI 80 (175)
Q Consensus 7 ~~~~~~~~~t~R~Y~np~~~AallGAl~e~g~~dv~~~g------fS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~ 80 (175)
++.|.+...... +.+..+--++-.|-..+.+-|.++| .............--+||..+.--|.=+--.....
T Consensus 37 Gi~Itl~d~~~~--v~~~dl~~lVNeL~~aGAeAIsINg~~~~~Ri~~~S~I~~~g~~I~Vn~~~~~~Py~I~AIGd~~~ 114 (170)
T 3GMG_B 37 GVMITIDDPGPG--VAPEVMIDVINELRAAGAEAIQINDAHRSVRVGVDTWVVGVPGSLTVDTKVLSPPYSILAIGDPPT 114 (170)
T ss_dssp EEEEEEECSSCC--CCHHHHHHHHHHHHHTTCSEEEEECSSCEEECCTTCCEEEETTEEEETTEEECSSEEEEEESCHHH
T ss_pred cEEEEEeCCCCC--CCHHHHHHHHHHHHHCCCcEEEEecCCCceEEEecCeEEecCCeEEECCEEeCCCEEEEEecCHHH
Q ss_pred eccCCCCCCCCCCccccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccc
Q FD01876784_043 81 HLDLNGETGNPCGWKGLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIH 160 (175)
Q Consensus 81 ~l~~~~~~~~~~~~~~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 160 (175)
.... ......+++.|..+|..--+...- ...||....
T Consensus 115 L~~~--------------l~~~~~~~~~l~~~g~~~~v~~~~-----------------------------~i~ipa~~~ 151 (170)
T 3GMG_B 115 LAAA--------------MNIPGGAQDGVKRVGGRMVVQQAD-----------------------------RVDVTALRQ 151 (170)
T ss_dssp HHHH--------------HTCTTSTHHHHHTTTCEEEEEEEE-----------------------------EEEECCCCC
T ss_pred HHHH--------------hcCCCcHHHHHHhcCCeEEEEEcC-----------------------------eEEEcCCCC
Q ss_pred cC----------CCCceee
Q FD01876784_043 161 AI----------NHNHHTH 169 (175)
Q Consensus 161 ~~----------~H~~HlH 169 (175)
.. +||||-|
T Consensus 152 ~~~~~y~~~~~~~~~~~~~ 170 (170)
T 3GMG_B 152 PKQHQYAQPVKEGHHHHHH 170 (170)
T ss_dssp CCCCSSCEEC---------
T ss_pred CcccccceecCCCCCCCCC
No 10
>2HZQ_A Apolipoprotein D; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR, MSE; 1.8A {Homo sapiens} SCOP: b.60.1.0
Probab=31.67 E-value=1.6e+02 Score=22.35 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred cccCHHHHHHHHHHHHHcCCce--eeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCce
Q FD01876784_043 95 KGLDIERQNKFIEELKRFGWGT--ILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHH 167 (175)
Q Consensus 95 ~~~D~~rq~~fi~aL~kFG~~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~H 167 (175)
..++.+...+|.+.|.+.|+.. +..-.-....+..+ +||+|
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~l~~~~~~~~~~~~~--------------------------------~~~~~ 173 (174)
T 2HZQ_A 131 VALPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKLSA--------------------------------HHHHH 173 (174)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCCTTCEECCCSSSCCC---------------------------------------
T ss_pred CCCCHHHHHHHHHHHHhCCCCHHHCEEecCCCCccccc--------------------------------cCcCC
No 11
>PF19659.3 ; DUF6162 ; Family of unknown function (DUF6162)
Probab=30.43 E-value=80 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred HHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCceee
Q FD01876784_043 107 EELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHHTH 169 (175)
Q Consensus 107 ~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~HlH 169 (175)
..|..-||++++...-... ...+|- +||+|-|
T Consensus 207 ~~l~~~GWkqVv~~~~~~~--------------------------~~~~~~-----~~~~~~~ 238 (240)
T A0A3P1XFL6_9BU 207 ASLTRHGWQQITAHLHARY--------------------------GRAGPV-----HHHHHHH 238 (240)
T ss_pred HHHHHcCCEEEEecCCccc--------------------------ceecCC-----CcCCCCC
No 12
>2AVX_A Regulatory protein sdiA; homoserine lactone, quorum sensing, TRANSCRIPTION; HET: HTF; NMR {Escherichia coli}
Probab=29.14 E-value=1.9e+02 Score=21.17 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHHHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCCCCCCCccccCHHHH
Q FD01876784_043 23 DVTTASLLGAMLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGETGNPCGWKGLDIERQ 102 (175)
Q Consensus 23 p~~~AallGAl~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~~~~~~~~~~D~~rq 102 (175)
.+....|..++...|++.+.+.......+..+..-....-.....-.|....-......+..-.....|..|.......+
T Consensus 24 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~~~~~~~~dp~~~~~~~~~~p~~w~~~~~~~~ 103 (171)
T 2AVX_A 24 EEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEA 103 (171)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEEEEECCTTSCCEEEEEECCCHHHHHHHHHTTGGGTCGGGCTTTCTTSEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEecCCCCCCCceEEEeCCCHHHHHHHHhCCchhhCCccchhcCCCCccccChhHhhcC
Q ss_pred HHHHHHHHHcCCceeee
Q FD01876784_043 103 NKFIEELKRFGWGTILG 119 (175)
Q Consensus 103 ~~fi~aL~kFG~~~~ls 119 (175)
..+.+.+.++|...-++
T Consensus 104 ~~~~~~~~~~g~~~g~~ 120 (171)
T 2AVX_A 104 QPLWEAARAHGLRRGVT 120 (171)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCccccEE
No 13
>PF18979.4 ; DUF5715 ; Family of unknown function (DUF5715)
Probab=28.42 E-value=3.4e+02 Score=22.42 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred EEee-cCCCcccCCHHHHHHHHHHHHHhC---------CCcEEEccc---------ccCCCCCCCCCcCCCCCceeeeee
Q FD01876784_043 10 FELA-INTERPYANDVTTASLLGAMLNTG---------YTDFNYNGG---------SNERGISPAPGSSHKNGMNLDMRY 70 (175)
Q Consensus 10 ~~~~-~~t~R~Y~np~~~AallGAl~e~g---------~~dv~~~gf---------S~~dGss~~PS~SH~NG~~~D~rY 70 (175)
|.+. -...+.|+.|.++..|...+.... ...|.++.. -...|....|.+.|.-|..+||.+
T Consensus 40 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~ItS~~Rs~~~Q~~l~~~~~~a~~~S~H~~G~A~DI~~ 119 (173)
T R6XLW9_9BACT/1 40 FYVDKLKNSIPYLVPRASVLLQDIGRAYFDSLQIKGIPLHKIIVTSILRTKDDVAKLRTRNANATENSCHLYGTTFDVCY 119 (173)
T ss_pred EEeCCCCCCccccCHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHhCCCCCCCCCcCCceEEEEEc
No 14
>4U0O_B Lipoyl synthase 2; radical SAM, TIM barrel, sulfotransferase, transferase; HET: MTA, DTT, SF4; 1.6A {Thermosynechococcus elongatus}
Probab=27.85 E-value=5.6e+02 Score=21.53 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCCCCCCCccccCHHH
Q FD01876784_043 22 NDVTTASLLGAMLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGETGNPCGWKGLDIER 101 (175)
Q Consensus 22 np~~~AallGAl~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~~~~~~~~~~D~~r 101 (175)
+.+.+..++--+.+.++..|.+.-+....+.. .+. . ..++.+.
T Consensus 216 ~~~~i~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~---------------~---------------------~~~~~~~ 258 (296)
T 4U0O_B 216 TEAEIIETLKDLRRVGCDRLTLGQYLPPSLSH-LPV---------------V---------------------KYWTPEE 258 (296)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCCCTTCS-SCC---------------C---------------------CCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEeeCCCCCCCCC-CCC---------------C---------------------CCCCHHH
Q ss_pred HHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCce
Q FD01876784_043 102 QNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHH 167 (175)
Q Consensus 102 q~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~H 167 (175)
-.++.+.+.++|+..+.+..+.......+..++ .||||
T Consensus 259 ~~~~~~~~~~~g~~~~~~~p~~r~~~~~~~~~~----------------------------~~~~~ 296 (296)
T 4U0O_B 259 FNTLGNIARELGFSHVRSGPLVRSSYHAAEGGH----------------------------HHHHH 296 (296)
T ss_dssp HHHHHHHHHHHTCEEEEESTTCCTTTTTTC------------------------------------
T ss_pred HHHHHHHHHHhCCceeecCCceehhHhHHhhcc----------------------------ccCCC
No 15
>PF01085.22 ; HH_signal ; Hedgehog amino-terminal signalling domain
Probab=26.12 E-value=3.2e+02 Score=21.90 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCcccCCeeEEee-cCCCcccCCHHHHHHHHHH----HHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeee
Q FD01876784_043 1 SSYSSGDVQFELA-INTERPYANDVTTASLLGA----MLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMR 69 (175)
Q Consensus 1 ~~Y~~g~~~~~~~-~~t~R~Y~np~~~AallGA----l~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~r 69 (175)
..|...++.|+-. .....+.+.+.+...|--- ..+..-..|.++-.-...+.. .+...|..|..+||+
T Consensus 55 ~~~~~~~i~F~~~e~~~~~r~m~~~~~~~l~~L~~~v~~~~~g~~l~V~~~~~~~~~~-~~~Slh~~GrA~dl~ 127 (162)
T T1ELE5_HELRO/2 55 VTNKNPNIIFQNSEGTGADRVMSKRCSDKLNNLASLTMEQWPGVRLRVVEAWDEDETH-PEDSLHYEGRAVDVT 127 (162)
T ss_pred hcCCCCCceeeCCCCCCCcchhhhhhhhhhhHHHHHHHhcCCCceEEEEEeeCCCCCC-CCCCcccCCCccccC
No 16
>7E8R_A EcoT38I restriction endonuclease; Endonuclease, DNA BINDING PROTEIN; HET: GOL; 1.9A {Escherichia phage P2}
Probab=25.53 E-value=7e+02 Score=23.23 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCCCCCCCccccCHHHH
Q FD01876784_043 23 DVTTASLLGAMLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGETGNPCGWKGLDIERQ 102 (175)
Q Consensus 23 p~~~AallGAl~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~~~~~~~~~~D~~rq 102 (175)
+.++||++-++.+..-..|...+...+|-++ |..+|+.-...+.--..+-+.+ ..|+.++-
T Consensus 196 q~vv~all~~~~~~~~~~v~~~~vn~sd~ss---------~~~GDI~v~~~~~~~~a~EVKd----------k~~t~~~V 256 (351)
T 7E8R_A 196 AIAAAISLHLLGEQRGWIIKAHPVNQAGSSS---------KEILDIDVYHDDIVFLSIEVKD----------KPFNYQDV 256 (351)
T ss_dssp HHHHHHHHHHHHGGGTCEEEECCSSCTTCSS---------SSCEEEEEEETTEEEEEEEEES----------SCCCHHHH
T ss_pred HHHHHHHHHHHhhhhCCeeeeecCCCCCCCC---------CCcCeEEEEECCEEEEEEEEec----------ccCCHHHH
Q ss_pred HHHHHHHHHcCCceee
Q FD01876784_043 103 NKFIEELKRFGWGTIL 118 (175)
Q Consensus 103 ~~fi~aL~kFG~~~~l 118 (175)
..+++.+.+.|..+.+
T Consensus 257 ~~~~~k~~~~~~~~~~ 272 (351)
T 7E8R_A 257 NHAVSKASASGISKVI 272 (351)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCEEE
No 17
>5QU5_B Cytoplasmic protein NCK1; SH3 DOMAIN, ADAPTOR, PEPTIDE BINDING, SIGNALING PROTEIN, DOMAIN SWAP; 1.11A {Homo sapiens} SCOP: b.34.2.0
Probab=24.62 E-value=75 Score=20.67 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred cccCCCCceeeccccC
Q FD01876784_043 159 IHAINHNHHTHFQGYN 174 (175)
Q Consensus 159 ~~~~~H~~HlHiqg~~ 174 (175)
.+..+|++|-|.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (99)
T 5QU5_B 2 GHHHHHHHHHHSGGLN 17 (99)
T ss_dssp ----------------
T ss_pred CCCcCccccccCCCCc
No 18
>3D1M_A Sonic hedgehog protein; Fibronectin Protein-Protein Complex, Autocatalytic cleavage, Developmental protein, Glycoprotein, Hydrolase, Lipoprotein, Membrane, Palmitate, Protease, Secreted, Immunoglobulin domain; 1.7A {Mus musculus} SCOP: d.65.1.2
Probab=24.25 E-value=5.8e+02 Score=20.50 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCcccCCeeEEee-cCCCcccCCHHHHHHHHHH----HHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeee
Q FD01876784_043 1 SSYSSGDVQFELA-INTERPYANDVTTASLLGA----MLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMR 69 (175)
Q Consensus 1 ~~Y~~g~~~~~~~-~~t~R~Y~np~~~AallGA----l~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~r 69 (175)
..|...++.|+-. .....+.+++.+...|--- -.+..-..|.++-.-...+.. .+.+.|..|+.+||.
T Consensus 57 ~~~~~~~i~F~~~e~~~~~r~m~~~l~~~L~~l~~~v~~~~~g~~l~V~s~~~~~~~~-~~~S~H~~GrA~Di~ 129 (168)
T 3D1M_A 57 TPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHH-SEESLHYEGRAVDIT 129 (168)
T ss_dssp EECCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSCCSCCS-CTTCGGGGTCEEEEE
T ss_pred ccccCCCceeeCcCCCCccccchHHHHHHHHHHHHHHHhhCCCCeEEEEEcccCCCCC-CCCCccccCCeeEee
No 19
>5ZVL_A Glutaredoxin; glutarredoxin, thioreducins, OXIDOREDUCTASE; 2.963A {Triticum aestivum} SCOP: c.47.1.0, l.1.1.1
Probab=23.60 E-value=65 Score=24.10 Aligned_cols=12 Identities=50% Similarity=0.952 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCceeeccccCC
Q FD01876784_043 164 HNHHTHFQGYNP 175 (175)
Q Consensus 164 H~~HlHiqg~~p 175 (175)
|++|-|..||.+
T Consensus 2 ~~~~~~~~~~~~ 13 (171)
T 5ZVL_A 2 HHHHHHSSGLVP 13 (171)
T ss_dssp ------------
T ss_pred CCCccccCCccc
No 20
>6T6E_A Pol protein; HIV, integrase, PNL4.3, VIRAL PROTEIN; 1.302A {Human immunodeficiency virus 1} SCOP: b.34.7.1, l.1.1.1
Probab=22.88 E-value=67 Score=23.47 Aligned_cols=11 Identities=45% Similarity=1.044 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred CCCceeecccc
Q FD01876784_043 163 NHNHHTHFQGY 173 (175)
Q Consensus 163 ~H~~HlHiqg~ 173 (175)
+|++|-|+|.|
T Consensus 2 ~~~~~~~~~~~ 12 (59)
T 6T6E_A 2 GHHHHHHIQNF 12 (59)
T ss_dssp --CCCCCCTTE
T ss_pred CCcccccccce
No 21
>4XFE_A TRAP dicarboxylate transporter subunit DctP; TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, TRANSPORT PROTEIN; HET: MSE, BDP, SO4, CXS; 1.4A {Pseudomonas putida ND6} SCOP: c.94.1.0, l.1.1.1
Probab=22.87 E-value=19 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred cchhhhhcccCCCCCCC-cccccc-ccccCCCCceee
Q FD01876784_043 135 WDEWYAVWQSEHPGETQ-RPVLKN-IIHAINHNHHTH 169 (175)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~~L~~-~~~~~~H~~HlH 169 (175)
+.+|.+........... ...+.. ..|+.+||||-|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (341)
T 4XFE_A 305 REKYGAQYADLMKRIDAVQAENLYFQGHHHHHHHHHH 341 (341)
T ss_dssp HHHHHGGGHHHHHHHHHCCSCCCSCC-----------
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHhccCCCCCCCCCC
No 22
>6QJ2_A Smc4; condensin, SMC complex, ATPase, chromosome condensation, loop extrusion, CELL CYCLE; HET: SO4; 3.0A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
Probab=22.76 E-value=1.1e+02 Score=26.60 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred CCccccCHHHHHHHHHHHHHcCCc-eeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCcccccc--ccccCCCCcee
Q FD01876784_043 92 CGWKGLDIERQNKFIEELKRFGWG-TILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKN--IIHAINHNHHT 168 (175)
Q Consensus 92 ~~~~~~D~~rq~~fi~aL~kFG~~-~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~H~~Hl 168 (175)
.+...+|...+..+++.|.++.-. +++--................+....+..+..+......+.. .....+||||-
T Consensus 322 Ep~~~l~~~~~~~l~~~l~~~~~~~qvi~~ths~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (403)
T 6QJ2_A 322 EIDAALDFRNVSIVANYIKERTRNAQFIVISLRNNMFELASRLVGVYKVNHMTKSVTIDNKDYVIGRAGISSASHHHHHH 401 (403)
T ss_dssp STTTTCCHHHHHHHHHCCCCCCCSSEEEEECCCHHHHHSCSEEEEEEEETTEEEEEEEECCCCCC---------------
T ss_pred cccccCCHHHHHHHHHHHHHhhcCCEEEEEEcChhHHHHHhhEEEEEEeCCceEEEEccccceEEeeeeccccccCCCCC
Q ss_pred e
Q FD01876784_043 169 H 169 (175)
Q Consensus 169 H 169 (175)
|
T Consensus 402 ~ 402 (403)
T 6QJ2_A 402 H 402 (403)
T ss_dssp -
T ss_pred C
No 23
>2IUT_B DNA TRANSLOCASE FTSK; NUCLEOTIDE-BINDING, CHROMOSOME PARTITION, ATP-BINDING, DNA- BINDING, CELL DIVISION, DNA TRANSLOCATION, KOPS, MEMBRANE, DIVISOME, CELL CYCLE, MEMBRANE; HET: AGS; 2.25A {PSEUDOMONAS AERUGINOSA}
Probab=22.63 E-value=1.5e+02 Score=28.34 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred ccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCceee
Q FD01876784_043 96 GLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHHTH 169 (175)
Q Consensus 96 ~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~HlH 169 (175)
.+...+...+++.|.+-|+......+.... .+++.....+-||||-|
T Consensus 528 ~i~~~~a~~i~~~le~~g~i~~~~~~~~r~---------------------------~~~~~~~~~~~~~~~~~ 574 (574)
T 2IUT_B 528 KIGYNRAARMIEAMEMAGVVTPMNTNGSRE---------------------------VIAPAPVRDKLHHHHHH 574 (574)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCCCCCeE---------------------------EeCCcchhhhccccCCC
No 24
>6Z6Z_A Neutrophil gelatinase-associated lipocalin; ANTICALIN, BETA-BARREL, COLCHICINE, CONFORMATION CHANGE, INDUCED FIT, LCN2, LIPOCALIN, NGAL, PROTEIN ENGINEERING, TRANSPORT PROTEIN; 1.78A {Homo sapiens} SCOP: b.60.1.1
Probab=22.34 E-value=3.7e+02 Score=20.74 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred cccCHHHHHHHHHHHHHcCCce-eeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccCCCCce
Q FD01876784_043 95 KGLDIERQNKFIEELKRFGWGT-ILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAINHNHH 167 (175)
Q Consensus 95 ~~~D~~rq~~fi~aL~kFG~~~-~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~H~~H 167 (175)
..++.+...+|.+.|.++|+.. .+........+....+. +||||
T Consensus 143 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~ 187 (187)
T 6Z6Z_A 143 KELTSELKENFIRFSKSLGLPENHIVFPVPIDQCIDGSAH-----------------------------HHHHH 187 (187)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGGGEECCCSCCCCC---------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHhEEecCCcccCCCCCcC-----------------------------CCCCC
No 25
>PF04015.16 ; DUF362 ; Domain of unknown function (DUF362)
Probab=22.10 E-value=3.8e+02 Score=22.25 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred eeEEeecCCCccc---CCHHHHHHHHHHHHHhCCCcEEEccccc
Q FD01876784_043 8 VQFELAINTERPY---ANDVTTASLLGAMLNTGYTDFNYNGGSN 48 (175)
Q Consensus 8 ~~~~~~~~t~R~Y---~np~~~AallGAl~e~g~~dv~~~gfS~ 48 (175)
|-||..-...+++ .+|+.+.|++..|.+.+.++|.+.+.+.
T Consensus 1 V~IKpN~~~~~~~~~~T~p~~l~ali~~l~~~G~~~i~i~d~~~ 44 (203)
T B1I1Q6_DESAP/3 1 IVIKPNLVLPEPPPVTTNVACVEAVARFCLERSPAEVVVAEGSG 44 (203)
T ss_pred CeEeccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
No 26
>7PK5_C Cyclic di-GMP phosphodiesterase PdeL; c-di-GMP, phosphodiesterase, DNA binding, HYDROLASE; 4.4A {Escherichia coli (strain K12)}
Probab=21.85 E-value=1.3e+02 Score=25.91 Aligned_cols=140 Identities=9% Similarity=0.119 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred eEEeecCCCcccCCHHHHHHHHHHHHHhCCCcEEEcccccCCCCCCCCCcCCCCCceeeeeeeeeCCCCCceeccCCCCC
Q FD01876784_043 9 QFELAINTERPYANDVTTASLLGAMLNTGYTDFNYNGGSNERGISPAPGSSHKNGMNLDMRYLRKDKSGDGIHLDLNGET 88 (175)
Q Consensus 9 ~~~~~~~t~R~Y~np~~~AallGAl~e~g~~dv~~~gfS~~dGss~~PS~SH~NG~~~D~rYl~~d~~~~~~~l~~~~~~ 88 (175)
.+.|.-...-.......+..++-.+.+.|+. |.+.+|......-........+...+|..++..-..
T Consensus 229 ~l~~ei~~~~~~~~~~~~~~~~~~l~~~G~~-i~l~~~~~~~~~~~~l~~~~~~~vkl~~~~~~~~~~------------ 295 (369)
T 7PK5_C 229 KLVLELTERNPIPVTPEARAIFDSLHQHNIT-FALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASV------------ 295 (369)
T ss_dssp EEEEEECSSSCCCCSHHHHHHHHHHHHTTCE-EEEEEETSTTCCHHHHHHSCCSEEEECHHHHHHBTT------------
T ss_pred eEEEEeeCCCCCCCcHHHHHHHHHHHHCCCE-EEEeCCCCCCCcHHHHHhCCCCEEEECHHHHhcccC------------
Q ss_pred CCCCCccccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCccccccccccC-CCCce
Q FD01876784_043 89 GNPCGWKGLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNIIHAI-NHNHH 167 (175)
Q Consensus 89 ~~~~~~~~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~H~~H 167 (175)
.......-..+++.....|..-+...--...........+.+ +..+.-..........+....... +||||
T Consensus 296 ------~~~~~~~l~~l~~~~~~~~~~~i~~gv~~~~~~~~~~~~g~~--~~qG~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
T 7PK5_C 296 ------DEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVH--FLQGYLYSPPVPGNKFISEWVMKAGGHHHH 367 (369)
T ss_dssp ------BSSHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHTTCC--EEESTTTCCCEEHHHHCCCCCCC-------
T ss_pred ------CcchHHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHHhcCCC--EEccceeCCCcCHHHHHHHHhHHcCCCCCC
Q ss_pred ee
Q FD01876784_043 168 TH 169 (175)
Q Consensus 168 lH 169 (175)
-|
T Consensus 368 ~~ 369 (369)
T 7PK5_C 368 HH 369 (369)
T ss_dssp --
T ss_pred CC
No 27
>7V9O_A Alanine aminopeptidase; Aminopeptidase, Alanine aminopeptidase, CYTOSOLIC PROTEIN, HYDROLASE; HET: MES; 1.77A {Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)}
Probab=21.72 E-value=86 Score=31.39 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred ccccCCCCceeeccccCC
Q FD01876784_043 158 IIHAINHNHHTHFQGYNP 175 (175)
Q Consensus 158 ~~~~~~H~~HlHiqg~~p 175 (175)
.+|+.+||||-|..|.-|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (884)
T 7V9O_A 3 SSHHHHHHHHHHSSGLVP 20 (884)
T ss_dssp ------------------
T ss_pred CCccCCCCCCCCcCCCCC
No 28
>5Y2W_A Rubisco operon transcriptional regulator; LysR-type transcription factor, TRANSCRIPTION; 2.2A {Synechocystis sp. (strain PCC 6803 / Kazusa)}
Probab=21.55 E-value=77 Score=25.21 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCceeeccccC
Q FD01876784_043 163 NHNHHTHFQGYN 174 (175)
Q Consensus 163 ~H~~HlHiqg~~ 174 (175)
+||||-|-|||+
T Consensus 2 ~~~~~~~~~~~~ 13 (234)
T 5Y2W_A 2 GHHHHHHKQGRL 13 (234)
T ss_dssp --------CEEE
T ss_pred CCCcccccCCce
No 29
>7QFL_A S-layer protein; s-layer, surface layer, bacterial, lactobacillus acidophilus, SlpA, self-assembly, STRUCTURAL PROTEIN; 1.4A {Lactobacillus acidophilus}
Probab=20.95 E-value=97 Score=25.79 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred ccccCCCCceeeccccCC
Q FD01876784_043 158 IIHAINHNHHTHFQGYNP 175 (175)
Q Consensus 158 ~~~~~~H~~HlHiqg~~p 175 (175)
..|+.+|++|-|.-+|++
T Consensus 1 ~~~~~~~~~~~~~~~~d~ 18 (132)
T 7QFL_A 1 MGHHHHHHHHHHSSGHIE 18 (132)
T ss_dssp ------------------
T ss_pred CCCCCCcCcccccccccC
No 30
>PF11080.12 ; GhoS ; Endoribonuclease GhoS
Probab=20.74 E-value=3.5e+02 Score=19.74 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred eeccCCCCCCCCCCccccCHHHHHHHHHHHHHcCCceeeeeeccccCCCCCCCcccchhhhhcccCCCCCCCcccccccc
Q FD01876784_043 80 IHLDLNGETGNPCGWKGLDIERQNKFIEELKRFGWGTILGWKYWDSTNSPNTGRAWDEWYAVWQSEHPGETQRPVLKNII 159 (175)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~D~~rq~~fi~aL~kFG~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 159 (175)
|.+.. .+-+.+.-.+|.++|.+.||.+.+.... ++...||+..
T Consensus 5 VrveL----------~~a~~~~Y~~L~~~M~~~Gf~~~i~~~~---------------------------g~~~~LP~~~ 47 (87)
T GHOS_ECOLI/8-9 5 VSFDY----------PSSYSSVFLRLRSLMYDMNFSSIVADEY---------------------------GIPRQLNENS 47 (87)
T ss_pred EEEEe----------cCCChHHHHHHHHHHHhCCCeeEEECCC---------------------------CCEeeCCCCc
Q ss_pred c
Q FD01876784_043 160 H 160 (175)
Q Consensus 160 ~ 160 (175)
+
T Consensus 48 y 48 (87)
T GHOS_ECOLI/8-9 48 F 48 (87)
T ss_pred E