Query FD01543125_04688 LysM domain-containing protein
Match_columns 270
No_of_seqs 101 out of 108
Neff 3.90431
Searched_HMMs 86581
Date Tue Feb 27 22:51:30 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6927681.hhr -oa3m ../results/6927681.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3BKH_A lytic transglycosylase; 99.0 8.4E-08 9.8E-13 79.1 15.6 166 8-267 97-267 (268)
2 4P0G_A Membrane-bound lytic mu 97.6 0.001 1.2E-08 62.5 10.2 109 8-220 265-373 (435)
3 4CFP_B MEMBRANE-BOUND LYTIC MU 97.4 0.019 2.2E-07 55.0 15.5 159 7-257 172-340 (341)
4 PF01464.24 ; SLT ; Transglycos 97.2 0.00071 8.2E-09 50.7 3.3 116 11-221 1-119 (129)
5 5A5X_A MEMBRANE-BOUND LYTIC MU 97.0 0.0096 1.1E-07 57.2 9.7 109 8-220 253-361 (453)
6 6GI4_B Endo-type membrane-boun 96.8 0.28 3.2E-06 40.3 15.1 160 7-259 20-191 (194)
7 5ANZ_A SOLUBLE LYTIC TRANSGLYC 96.1 0.015 1.8E-07 56.8 5.1 65 7-83 117-218 (420)
8 1LTM_A 36 KDA SOLUBLE LYTIC TR 96.0 0.016 1.9E-07 56.2 4.7 65 7-83 94-196 (320)
9 7QVD_AAA Lytic murein transgly 96.0 0.02 2.3E-07 55.0 5.2 65 7-83 76-177 (380)
10 PF13406.10 ; SLT_2 ; Transglyc 95.9 0.032 3.7E-07 53.0 6.1 66 7-83 72-173 (292)
11 5OHU_A Soluble lytic murein tr 95.6 0.16 1.8E-06 49.9 9.5 135 9-246 478-612 (642)
12 4ANR_A SOLUBLE LYTIC TRANSGLYC 95.5 0.011 1.3E-07 57.3 1.5 65 7-83 91-193 (323)
13 4XP8_A EtgA protein; peptidogl 95.5 0.058 6.8E-07 38.0 4.6 55 11-79 2-56 (88)
14 5O29_A Transglycosylase; lytic 94.7 0.082 9.5E-07 50.9 4.6 58 9-85 436-493 (596)
15 PF19489.3 ; SLT_4 ; Transglyco 93.4 0.32 3.7E-06 38.8 4.8 67 6-85 31-104 (184)
16 PF06871.15 ; TraH_2 ; TraH_2 91.7 1.9 2.2E-05 39.7 8.2 106 12-211 5-139 (206)
17 4HPE_C Putative cell wall hydr 91.4 2.8 3.3E-05 37.2 8.6 85 7-205 25-111 (308)
18 1GBS_A AUSTRALIAN BLACK SWAN E 88.7 1.6 1.8E-05 35.7 4.7 52 8-77 47-101 (185)
19 6TAB_A SLT domain-containing p 88.0 1.8 2.1E-05 39.5 5.0 83 8-184 119-210 (254)
20 4M5E_A Uncharacterized protein 87.1 3.8 4.4E-05 42.7 7.2 102 7-184 223-333 (410)
21 3GXR_D Goose-type lysozyme 1; 87.0 2.3 2.7E-05 35.6 4.7 57 6-77 43-103 (187)
22 4G9S_A Goose-type lysozyme; hy 84.6 3.7 4.2E-05 34.3 4.8 49 7-74 48-100 (187)
23 PF06737.18 ; Transglycosylas ; 82.6 2.7 3.1E-05 28.5 2.7 42 23-83 3-44 (77)
24 PF07182.15 ; DUF1402 ; Protein 81.7 36 0.00042 34.1 10.8 194 3-217 49-268 (294)
25 7K5C_D Peptidoglycan transglyc 80.9 5.1 5.9E-05 45.0 5.4 68 1-87 4-71 (1318)
26 3W6B_A Lysozyme-like chitinoly 78.8 10 0.00012 31.2 5.3 60 7-85 40-103 (183)
27 4CGE_E RESUSCITATION-PROMOTING 74.4 3.4 3.9E-05 28.5 1.3 41 24-83 1-41 (75)
28 1XSF_A Probable resuscitation- 72.8 6.2 7.2E-05 30.3 2.5 42 21-81 25-66 (108)
29 8GFH_A Lytic transglycosylase 71.4 11 0.00013 38.6 4.5 55 9-85 371-426 (544)
30 2N5Z_A Resuscitation-promoting 68.0 7.8 9.1E-05 27.7 2.0 47 19-84 1-47 (82)
31 4EMN_B Probable resuscitation- 60.5 10 0.00012 26.4 1.4 38 25-81 2-39 (81)
32 4FDY_B Similar to lipoprotein, 59.5 24 0.00028 31.6 3.8 28 7-34 27-56 (313)
33 1QSA_A PROTEIN (SOLUBLE LYTIC 58.5 27 0.00031 34.4 4.3 58 9-85 453-510 (618)
34 4OW1_W Resuscitation-promoting 47.2 33 0.00038 26.4 2.4 40 23-81 2-41 (92)
35 8EJ5_A gp10, tail tip lysin (s 42.6 62 0.00072 34.2 4.2 31 4-34 41-71 (473)
36 PF20306.2 ; Sp-DndD ; Small pr 42.3 81 0.00093 22.1 3.5 25 10-34 3-27 (50)
37 3KK4_B uncharacterized protein 37.0 1.1E+02 0.0013 27.3 4.2 41 7-47 36-76 (125)
38 PF00216.25 ; Bac_DNA_binding ; 34.4 1.3E+02 0.0015 22.3 3.7 24 10-33 4-27 (90)
39 PF16805.9 ; Trans_coact ; Phag 32.3 78 0.0009 25.4 2.4 29 4-32 16-44 (69)
40 3OTP_L Lysozyme C; typsin-like 30.1 1.1E+02 0.0013 20.2 2.6 37 21-72 8-44 (44)
41 1B8Z_B PROTEIN (HISTONELIKE PR 28.8 1.9E+02 0.0022 21.2 3.9 25 9-33 3-27 (90)
42 PF10911.12 ; T7-like_Y65 ; Bac 28.0 1.8E+02 0.0021 24.4 3.8 34 151-190 16-49 (77)
43 2NDP_B Histone-like DNA-bindin 27.0 2E+02 0.0024 21.9 3.8 25 9-33 9-33 (99)
44 1OWF_A Integration Host Factor 26.8 2.1E+02 0.0024 21.9 3.8 25 9-33 5-29 (99)
45 1MUL_A DNA binding protein HU- 26.7 1.9E+02 0.0022 21.4 3.5 23 11-33 5-27 (90)
46 PF18896.4 ; SLT_3 ; Lysozyme l 26.1 1.9E+02 0.0022 19.0 3.1 50 15-77 2-51 (84)
47 PF13702.10 ; Lysozyme_like ; L 25.9 2.3E+02 0.0027 22.5 4.1 43 8-77 5-49 (161)
48 PF12523.12 ; DUF3725 ; Protein 25.7 1.1E+02 0.0013 25.6 2.3 31 192-222 2-32 (74)
49 5L8Z_A DNA-binding protein; th 25.3 2E+02 0.0023 21.9 3.5 25 9-33 5-31 (96)
50 PF13772.10 ; AIG2_2 ; AIG2-lik 25.2 1.7E+02 0.002 22.5 3.2 29 2-30 73-101 (101)
51 5FBM_A DNA-binding protein HU; 24.9 2.1E+02 0.0024 22.4 3.6 24 10-33 5-28 (99)
52 4P3V_A DNA-binding protein HU- 24.4 2.1E+02 0.0024 21.3 3.4 24 10-33 4-27 (90)
53 1WTU_A TRANSCRIPTION FACTOR 1; 24.3 2.2E+02 0.0026 21.6 3.6 24 10-33 4-27 (99)
54 6N2L_A Histone family protein 23.8 2.5E+02 0.0029 22.0 3.9 25 9-33 11-35 (100)
55 PF12554.12 ; MOZART1 ; Mitotic 22.8 1.1E+02 0.0013 23.0 1.7 13 19-31 31-43 (47)
56 PF11203.12 ; EccE ; Putative t 21.6 1.1E+02 0.0013 25.1 1.5 61 153-213 1-75 (90)
57 1PGY_A Swa2p; UBA, ubiquitin, 21.5 3.8E+02 0.0044 20.9 4.1 42 192-235 3-44 (47)
58 2FBD_B Lysozyme 1; Digestive L 21.3 1.1E+02 0.0013 25.0 1.6 52 12-77 7-61 (122)
59 1P71_A DNA-binding protein HU; 20.2 3.4E+02 0.004 20.2 3.8 25 9-33 3-27 (94)
No 1
>3BKH_A lytic transglycosylase; transglycosylase, bacteriophage, phiKZ, endolysin, peptidoglycan, cell wall degradation, lysozyme, HYDROLASE; HET: MSE; 2.5A {Pseudomonas phage phiKZ}
Probab=98.97 E-value=8.4e-08 Score=79.07 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=114.3 Template_Neff=12.200
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCCH
Q FD01543125_046 8 IYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGTY 87 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT~ 87 (270)
.....+..++..+++++..+.+++..|.. +++...+ +.+++.|+.||+.+||..+....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~es~------~~~~~~~------------~~~~a~g~~q~~~~t~~~~~~~~~~- 157 (268)
T 3BKH_A 97 AATPVMNAVENATGVRSQLLLTFASIESA------FDYEIKA------------KTSSATGWFQFLTGTWKTMIENYGM- 157 (268)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHT------TCSSCBC------------TTSSCBTTTTBCHHHHHHHHHHHGG-
T ss_pred hchhHHHHHHHHHCCCHHHHHHHHhhhhh------cCCcccc------------CCCCCeeceeecchHHHHHHHHHHH-
Confidence 34567788899999999999999999973 3445556 6789999999999999887533221
Q ss_pred HHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccCH
Q FD01543125_046 88 LYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFKP 167 (270)
Q Consensus 88 Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~dp 167 (270)
..|+. . ...+.+|+||
T Consensus 158 ------~~g~~----~------------------------------------------------------~~~~~~r~~~ 173 (268)
T 3BKH_A 158 ------KYGVL----T------------------------------------------------------DPTGALRKDP 173 (268)
T ss_dssp ------GGTCC----C------------------------------------------------------CTTCGGGGCH
T ss_pred ------HhCCC----C------------------------------------------------------CCCCCcCCCH
Confidence 11110 0 0234799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHhCCCCHHHHHHHHHHHhChHHHHHHHH
Q FD01543125_046 168 EYAIMAAVDYGVANLASLKMA-GYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIKNNITEGKAKELLIAQVGDESAISKAK 246 (270)
Q Consensus 168 e~sI~aaaDYa~~NL~~L~~~-G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~ti~~~~A~~LL~aQVG~~~A~~~~~ 246 (270)
+.+++.+..|...+.+.|... |..+ ++.+ +|++|+.|++++.+|+...-... +...+..- ..+...+-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~----~y~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~---~~~n~~~~ 242 (268)
T 3BKH_A 174 RISALMGAELIKENMNILRPVLKREP---TDTD----LYLAHFFGPGAARRFLTTGQNEL-AATHFPKE---AQANPSIF 242 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSSCC---CHHH----HHHHHHHCHHHHHHHTTSCTTSB-HHHHCHHH---HHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC---ChhH----HHHHHHhCHHHHHHHHHhCccch-HHHhCHHH---HHhCHHHh
Confidence 999999999999999999975 6654 4443 59999999999999998753222 22222211 11111121
Q ss_pred --h--CCCHHHHHHHHHHHHHhhcC
Q FD01543125_046 247 --K--NGGYMKAHRKWLIDYIDDNI 267 (270)
Q Consensus 247 --~--~gd~~~AhR~WL~~yId~~I 267 (270)
. .+..+..+..|+...+++..
T Consensus 243 ~~~~g~~~t~~~~~~~~~~~~~~~~ 267 (268)
T 3BKH_A 243 YNKDGSPKTIQEVYNLMDGKVAAHR 267 (268)
T ss_dssp BCTTSCBCBHHHHHHHHHHHHHTTC
T ss_pred cCCCCCcccHHHHHHHHHHHHHHhc
Confidence 1 34466677888888777654
No 2
>4P0G_A Membrane-bound lytic murein transglycosylase F; Lytic transglycosylase, glycosyltransferase, ABC substrate binding-like domain, peptidoglycan, LYASE; HET: NAG, BLG, AMU; 1.65A {Pseudomonas aeruginosa}
Probab=97.59 E-value=0.001 Score=62.55 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCCH
Q FD01543125_046 8 IYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGTY 87 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT~ 87 (270)
.|.+.|..++++.|+++.-|+||+..| ..|++..++ ...|.||.||...||...
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~a~~~~e------s~~~~~~~s-------------~~g~~G~mq~~~~t~~~~------- 318 (435)
T 4P0G_A 265 RYESHFKQSGKQLDTDWRLLAAIGYQE------SLWQPGATS-------------KTGVRGLMMLTNRTAQAM------- 318 (435)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHH------HSSCTTCBC-------------TTSCBTTTTBCHHHHHHH-------
T ss_pred hhHHHHHHHHhhhCCCHHHHHHHHHHH------hcCCCCCcc-------------cCCceeeeccCHHHHHHh-------
Q ss_pred HHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccCH
Q FD01543125_046 88 LYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFKP 167 (270)
Q Consensus 88 Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~dp 167 (270)
. +.+ +.||
T Consensus 319 ---------------~------------------------------------------------~~~---------~~~~ 326 (435)
T 4P0G_A 319 ---------------G------------------------------------------------VSN---------RLDP 326 (435)
T ss_dssp ---------------T------------------------------------------------CSC---------TTCH
T ss_pred ---------------C------------------------------------------------CCC---------CCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHh
Q FD01543125_046 168 EYAIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIK 220 (270)
Q Consensus 168 e~sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~ 220 (270)
+.+|.+++.|-..-.+.+. ..+.+.++-+++.-+.+.|+|...+-++
T Consensus 327 ~~~i~~g~~~l~~~~~~~~------~~~~~~~~~~~~~aayn~g~~~~~~a~~ 373 (435)
T 4P0G_A 327 KQSIQGGSKYFVQIRSELP------ESIKEPDRSWFALAAYNIGGAHLEDARK 373 (435)
T ss_dssp HHHHHHHHHHHHHHHHHSC------TTCCTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC------ccCCcchHHHHHHHHHhcCchHHHHHHH
No 3
>4CFP_B MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE C; LYASE; HET: P6G, CIT, AMV, NAG, AMU; 2.15A {ESCHERICHIA COLI}
Probab=97.35 E-value=0.019 Score=54.99 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCC
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGT 86 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT 86 (270)
..|++.+...+.+.|++|.-++|+|..| ..++|...+ ...|.||.|+...+|........
T Consensus 172 ~~y~~~v~~~a~~~~l~~~li~aii~~E------S~fnp~a~S-------------~~~A~GlmQi~p~ta~~~~~~~~- 231 (341)
T 4CFP_B 172 HKYLGMVRQASRKYGVDESLILAIMQTQ------SSFNPYAVS-------------RSDALGLMQVVQHTAGKDVFRSQ- 231 (341)
T ss_dssp GGGHHHHHHHHHHHTCCHHHHHHHHHHH------HTTCTTCBC-------------TTCCBTTTTBCCCCCCHHHHHHT-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------cCCCCCCCC-------------CCCceeCcccchhhhHHHHHHhc-
Q ss_pred HHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccC
Q FD01543125_046 87 YLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFK 166 (270)
Q Consensus 87 ~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~d 166 (270)
|.-..... ..++|
T Consensus 232 ---------~~~~~~~~----------------------------------------------------------~~l~d 244 (341)
T 4CFP_B 232 ---------GKSGTPSR----------------------------------------------------------SFLFD 244 (341)
T ss_dssp ---------TCCSCCCH----------------------------------------------------------HHHHS
T ss_pred ---------CCCCCCCH----------------------------------------------------------HHhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHhCC----------CCHHHHHHHHHHHh
Q FD01543125_046 167 PEYAIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIKNN----------ITEGKAKELLIAQV 236 (270)
Q Consensus 167 pe~sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~t----------i~~~~A~~LL~aQV 236 (270)
|+..|..++.| |..|...-..-.. ++....-.+-.++..|++...+.+... ++++.....|..+.
T Consensus 245 p~~ni~~g~~y----l~~l~~~~~~~~~-~~~~~~~~aiaaYn~G~g~v~~~~~~~~~~a~~~in~~~~~~~y~~l~~~~ 319 (341)
T 4CFP_B 245 PASNIDTGTAY----LAMLNNVYLGGID-NPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRH 319 (341)
T ss_dssp HHHHHHHHHHH----HHHCCCCCSTTCC-SHHHHHHHHHHHHHHCHHHHHTTTCSSHHHHHHHHTTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HHHHHHHhcCCCC-CchhHHHHHHHHHHcChHHHHHHHccChhHHHHHHhhCCHHHHHHHHHHcC
Q ss_pred ChHHHHHHHHhCCCHHHHHHH
Q FD01543125_046 237 GDESAISKAKKNGGYMKAHRK 257 (270)
Q Consensus 237 G~~~A~~~~~~~gd~~~AhR~ 257 (270)
.......|+..--.+...|+.
T Consensus 320 p~~et~~Yl~kV~~~~~~y~~ 340 (341)
T 4CFP_B 320 PSAESRRYLYKVNTAQKSYRR 340 (341)
T ss_dssp SCHHHHHHHHHHHHHHHTTSB
T ss_pred CCHHHHHHHHHHHHHHHHHhc
No 4
>PF01464.24 ; SLT ; Transglycosylase SLT domain
Probab=97.18 E-value=0.00071 Score=50.68 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCc--hhhhcccccchhHHHhccCCCHH
Q FD01543125_046 11 NEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSS--AAGMTQFLNGTWMTETLRDGTYL 88 (270)
Q Consensus 11 ~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SS--AaGLtQFL~gTW~~~A~~~GT~L 88 (270)
..|.+++++.|++|..+++|+..|+.-.. ..-++...+ ..+. +.|+.||...+|......
T Consensus 1 ~~i~~~~~~~~~~~~~~~ai~~~es~~~~-~~~~~~~~~------------~~~~~~~~G~~q~~~~~~~~~~~~----- 62 (129)
T YQBO_BACSU/135 1 MAAIMATKTPMSWLPGLMTIAQHESGGNP-KAINLWDSN------------AKAGHPSQGLMQTIPSTFNAHKLP----- 62 (129)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHHHhCCCC-CcccccccC------------cccCCCCccceeeCcchhHhcCCC-----
Q ss_pred HHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccCHH
Q FD01543125_046 89 YEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFKPE 168 (270)
Q Consensus 89 n~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~dpe 168 (270)
.. ..+.+|.
T Consensus 63 -------------~~----------------------------------------------------------~~~~~~~ 71 (129)
T YQBO_BACSU/135 63 -------------GM----------------------------------------------------------NNILNPI 71 (129)
T ss_pred -------------CC----------------------------------------------------------CCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHhC
Q FD01543125_046 169 YAIMAAVDYGVANLASLK-MAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIKN 221 (270)
Q Consensus 169 ~sI~aaaDYa~~NL~~L~-~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~ 221 (270)
..|..+++|......... ..+.....+.. +|.+||.|.+...+++..
T Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~y~~g~~~~~~~~~~ 119 (129)
T YQBO_BACSU/135 72 HNAAAAIGYIKSRYGSINNVPGIRSMRHGG------PYVGYANGGLITKEQIAR 119 (129)
T ss_pred HHHHHHHHHHHHHhCcccCCCCcccccCCC------cccccccCCccccccccc
No 5
>5A5X_A MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F; HYDROLASE, LYTIC TRANSGLYCOSILOSE, CELL WALL RECYCLING; HET: EDO, MSE; 1.801A {PSEUDOMONAS AERUGINOSA PAO1}
Probab=96.99 E-value=0.0096 Score=57.18 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCCH
Q FD01543125_046 8 IYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGTY 87 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT~ 87 (270)
.|.+.|..++++.|+++.-|+||+-.| ..|++...+ ...|.|+.||...||...
T Consensus 253 ~~~~~~~~~a~~~g~d~~ll~ai~~~e------s~~~~~~~s-------------~~g~~G~mq~~~~t~~~~------- 306 (453)
T 5A5X_A 253 RYESHFKQSGKQKDTDWRLLAAIGYQE------SLWQPGATS-------------KTGVRGLMMLTNRTAQAM------- 306 (453)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH------HSSCTTCBC-------------TTSCBTTTTBCHHHHHHH-------
T ss_pred chHHHHHHHhhccCCCHHHHHHHHHHh------hcCCCCCCC-------------CCCceeccccCHHHHHHc-------
Q ss_pred HHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccCH
Q FD01543125_046 88 LYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFKP 167 (270)
Q Consensus 88 Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~dp 167 (270)
. +.+ ++||
T Consensus 307 ---------------g------------------------------------------------~~~---------~~~~ 314 (453)
T 5A5X_A 307 ---------------G------------------------------------------------VSN---------RLDP 314 (453)
T ss_dssp ---------------T------------------------------------------------CSC---------TTSH
T ss_pred ---------------C------------------------------------------------CCC---------CCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHh
Q FD01543125_046 168 EYAIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIK 220 (270)
Q Consensus 168 e~sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~ 220 (270)
+.+|.+++.|-..-.+.+. .++.+.++-+++--+.+.|++...+..+
T Consensus 315 ~~~i~~g~~yl~~~~~~~~------~~~~~~~~~~~~laayn~G~~~~~~~~~ 361 (453)
T 5A5X_A 315 KQSIQGGSKYFVQIRSELP------ESIKEPDRSWFALAAYNIGGAHLEDARK 361 (453)
T ss_dssp HHHHHHHHHHHHHHHHHSC------TTCCTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC------ccCCcchHHHHHHHHHHcChhHHHHHHH
No 6
>6GI4_B Endo-type membrane-bound lytic murein transglycosylase A; Lytic Transglycosylase, LYASE; 1.35A {Escherichia coli}
Probab=96.76 E-value=0.28 Score=40.33 Aligned_cols=160 Identities=15% Similarity=0.065 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCC
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGT 86 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT 86 (270)
..|...|...+++.|+++..+++++..| ..+++...+ .+++.|+.||...+|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~a~~~~e------s~~~~~~~~-------------~~g~~G~~q~~~~~~~~~------ 74 (194)
T 6GI4_B 20 MQWMPISQKAGAAWGVDPQLITAIIAIE------SGGNPNAVS-------------KANAIGLMQLKASTSGRD------ 74 (194)
T ss_dssp HTTHHHHHHHHHHHTCCHHHHHHHHHHH------TTTCTTCEE-------------TTTEETTTTEECCCCCHH------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------cCCCCCCCC-------------CCCccccccccccchhHH------
Q ss_pred HHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccC
Q FD01543125_046 87 YLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFK 166 (270)
Q Consensus 87 ~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~d 166 (270)
..+..|+...... ..+++
T Consensus 75 ----~~~~~~~~~~~~~----------------------------------------------------------~~~~~ 92 (194)
T 6GI4_B 75 ----VYRRMGWSGEPTT----------------------------------------------------------SELKN 92 (194)
T ss_dssp ----HHHHTTCSSCCCH----------------------------------------------------------HHHHS
T ss_pred ----HHHHhCCCCCCCH----------------------------------------------------------HHHcC
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHhC----------CCCHHHHHHHHHHH
Q FD01543125_046 167 PEYAIMAAVDYGVANLAS-LKMAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIKN----------NITEGKAKELLIAQ 235 (270)
Q Consensus 167 pe~sI~aaaDYa~~NL~~-L~~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~----------ti~~~~A~~LL~aQ 235 (270)
|..+|..++.|...+++. ... ..++.+....+...++.|.+...++++. ..+...........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
T 6GI4_B 93 PERNISMGAAYLNILETGPLAG------IEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARN 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT------CCCHHHHHHHHHHHHHHCHHHHHHTTCSSHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCccCC------CCChHHHHHHHHHHHhcCHHHHHHHHccCHHHHHHHHhcCCHHHHHHHHHHh
Q ss_pred hChHHHHHHHH-hCCCHHHHHHHHH
Q FD01543125_046 236 VGDESAISKAK-KNGGYMKAHRKWL 259 (270)
Q Consensus 236 VG~~~A~~~~~-~~gd~~~AhR~WL 259 (270)
........++. -.+.+....-.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (194)
T 6GI4_B 167 HPAPQAPRYIYKLEQALDAMLEHHH 191 (194)
T ss_dssp CSCTHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCcchHHHHHHHHHHHHHHHHhccc
No 7
>5ANZ_A SOLUBLE LYTIC TRANSGLYCOSYLASE B3; HYDROLASE, LYTIC TRANSGLYCOSILASE, CELL WALL RECYCLING; HET: PEG; 1.614A {PSEUDOMONAS AERUGINOSA}
Probab=96.12 E-value=0.015 Score=56.85 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhc-------------------------------------cCCCccCCCccc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAK-------------------------------------YRGGVWKPTSVC 49 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk-------------------------------------~~~G~W~~~S~n 49 (270)
..|++.+.++++++|+||.-|+||+.-|..- .. |.+++....
T Consensus 117 ~~~~~~~~~~~~~~gv~~~~i~ai~~~Es~~G~~~g~~~~~~~l~~l~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~ 195 (420)
T 5ANZ_A 117 AQHARILGEVDARYAVDADAVVAIWGMESNYGSHMGNKNVIRSLATLAYEGRRPEFAHAQLLAALKILQH-GDVPASFMI 195 (420)
T ss_dssp HHTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTCSCSEEHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-TSSCGGGCE
T ss_pred HHHHHHHHHHHHHHCCCHHHhhhHHHHHcccccccCCCcccccccccccCCCCHHHHHHHHHHHHHHHHc-CCCCHHHCc
Q ss_pred cCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 50 KNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 50 ~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
. +-..|-|++||+..||...+.+
T Consensus 196 ~-----------s~aGa~G~~Qf~p~~~~~~~~d 218 (420)
T 5ANZ_A 196 G-----------SWAGAMGQTQFIPTTHNQYAVD 218 (420)
T ss_dssp E-----------CTTSCBTTTTBCHHHHHHHCCC
T ss_pred c-----------cCChhhcCCccccchHHHHhcc
No 8
>1LTM_A 36 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE; GLYCOSYLTRANSFERASE, MURAMIDASE, TRANSGLYCOSYLASE, PEPTIDOGLYCAN MATURATION, LYSOZYME, PERIPLASMIC; HET: BCN; 1.7A {Escherichia coli} SCOP: d.2.1.6
Probab=96.03 E-value=0.016 Score=56.17 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhc--------------------------------------cCCCccCCCcc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAK--------------------------------------YRGGVWKPTSV 48 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk--------------------------------------~~~G~W~~~S~ 48 (270)
..|++.+.++++++|++|.-|+||+-.|..- .. |.+++.+.
T Consensus 94 ~~~~~~l~~~~~~~gV~~~ii~AI~~~ES~~G~~~g~~~~~~~l~tla~~~~~r~~~~~~el~~~l~~~~~-~~~~~~~~ 172 (320)
T 1LTM_A 94 NQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARD-EQDDPLNL 172 (320)
T ss_dssp HHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCCCCEEHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH-TTCCTTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHhhhhhhhcchhhhcCCcccccccchhhhCChhHHHhhhhHHHHHHHHHHh-cCCChhhh
Q ss_pred ccCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 49 CKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 49 n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
.. +-..|-|++||+..||...+.+
T Consensus 173 ~g-----------S~aGA~G~~Qf~Pst~~~~~~d 196 (320)
T 1LTM_A 173 KG-----------SFAGAMGYGQFMPSSYKQYAVD 196 (320)
T ss_dssp EE-----------CTTCCBTTTTBCHHHHHHHCCC
T ss_pred cC-----------CCCCCCCccccChhHHHHHhHh
No 9
>7QVD_AAA Lytic murein transglycosylase; Lytic transglycosylase, HYDROLASE; 1.7A {Pseudomonas aeruginosa}
Probab=96.00 E-value=0.02 Score=55.04 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhc-------------------------------------cCCCccCCCccc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAK-------------------------------------YRGGVWKPTSVC 49 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk-------------------------------------~~~G~W~~~S~n 49 (270)
..|++.+..+++++|+||.-|+||+.-|..- .. |.+++.+..
T Consensus 76 ~~~~~~l~~~~~~~gv~~~~i~ai~~~Es~~G~~~g~~~~~~~l~t~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~ 154 (380)
T 7QVD_AAA 76 AQHDKLLDQVAARYGVDKYTVVAVWGVESDYGRIFGKRPLLTSLSTLSCYGRRQSFFQGEFLATLKLLQA-GDIRDAGIT 154 (380)
T ss_pred HHhHHHHHHHHHHHCCCHHHHHHHHHHHchhccccCCCChhhhhccccccccchHhhhHHHHHHHHHHHc-CCCChhhCC
Q ss_pred cCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 50 KNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 50 ~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
. +-..|-|++||+..+|...+..
T Consensus 155 g-----------s~aGa~G~~Qf~p~~~~~~~~d 177 (380)
T 7QVD_AAA 155 G-----------SWAGAFGHTQFMPSTYARIAVD 177 (380)
T ss_pred c-----------cccHHhcCCccChhHHHHheeC
No 10
>PF13406.10 ; SLT_2 ; Transglycosylase SLT domain
Probab=95.93 E-value=0.032 Score=53.02 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCC-C-----------------------------------ccCCCcccc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRG-G-----------------------------------VWKPTSVCK 50 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~-G-----------------------------------~W~~~S~n~ 50 (270)
..|++.+..+++++|+||.-|+||+..|..=... | .+++.+...
T Consensus 72 ~~~~~~l~~~~~~~gVp~~~l~ai~~~ES~~g~~~~~~~~~~~l~tl~~~~~r~~~~~~~l~~~l~~~~~~~~~~~~~~g 151 (292)
T A9KCL8_COXBN/3 72 QKHHRILTEIGNKYGVNPCFIVSLWGMETSYGSYMGNFPVIQSLATLAYESQRKAFFRKQLFYALEILNGGHVTLQNFKG 151 (292)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccccCCCCchhHHHhHhhHHhhhHHHHHHHHHHHHHHHhCCCCChhHcCC
Q ss_pred CCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 51 NSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 51 ~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
..+.|.|++||+..||...+.+
T Consensus 152 -----------s~aGA~G~~Qf~P~t~~~~g~d 173 (292)
T A9KCL8_COXBN/3 152 -----------EWAGASGQPQFLPSSWHNYAVD 173 (292)
T ss_pred -----------CCCccCCCCCCChhHHHHhhcc
No 11
>5OHU_A Soluble lytic murein transglycosylase; Lytic Transglycosylase, LYASE; HET: PO4; 2.2A {Pseudomonas aeruginosa}
Probab=95.64 E-value=0.16 Score=49.91 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCCCHH
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDGTYL 88 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~GT~L 88 (270)
|++.|...+++.+++|.-|.|||..|.. |+|...+ .+.|.||+|++..|-.
T Consensus 478 ~~~~v~~~a~~~~~dp~li~ai~RqES~------f~~~a~S-------------~agA~GlmQ~mp~Ta~---------- 528 (642)
T 5OHU_A 478 HRATLVREAKNRGLHSSWIFAITRQESA------FMSDARS-------------GVGATGLMQLMPGTAK---------- 528 (642)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHT------TCTTCBC-------------TTSCBTTTTBCHHHHH----------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhcc------CCCCCCC-------------CCCCccccccCHHHHH----------
Q ss_pred HHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhccCHH
Q FD01543125_046 89 YEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLRFKPE 168 (270)
Q Consensus 89 n~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR~dpe 168 (270)
..|+..|+-..... .-+||+
T Consensus 529 -~~a~~~~~~~~~~~-----------------------------------------------------------~l~~p~ 548 (642)
T 5OHU_A 529 -ETSRKFGIPLASTQ-----------------------------------------------------------QLIVPD 548 (642)
T ss_dssp -HHHHHHTCCCCCGG-----------------------------------------------------------GGGSHH
T ss_pred -HHHHHhCCCCCCHH-----------------------------------------------------------HhcCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHhCCCCHHHHHHHHHHHhChHHHHHHHH
Q FD01543125_046 169 YAIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIYLTHHLGLSDAIHFIKNNITEGKAKELLIAQVGDESAISKAK 246 (270)
Q Consensus 169 ~sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~ti~~~~A~~LL~aQVG~~~A~~~~~ 246 (270)
.-|.-++.|-..-++.....-+.... +-.-|++-..++++. ....--..++..|.-..-+.|++
T Consensus 549 ~ni~lg~~yl~~l~~~~~g~~~~a~a------------aYNaGp~~v~~w~~~--~~~~~~~~fie~Ip~~ETr~Yvk 612 (642)
T 5OHU_A 549 VNIRLGAAYLSQVHSQFNGNRVLASA------------AYNAGPGRVRQWLKD--TRHLAFDVWIETIPFDETRQYVQ 612 (642)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHH------------HHHHCHHHHHHHTTT--CCSEEHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHH------------HHhcCHHHHHHHHHh--ccCCccchHHHhCCHHHHHHHHH
No 12
>4ANR_A SOLUBLE LYTIC TRANSGLYCOSYLASE B; LYASE, EF-HAND LIKE MOTIF, PEPTIDOGLYCAN; 1.84A {PSEUDOMONAS AERUGINOSA}
Probab=95.52 E-value=0.011 Score=57.29 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhc--------------------------------------cCCCccCCCcc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAK--------------------------------------YRGGVWKPTSV 48 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk--------------------------------------~~~G~W~~~S~ 48 (270)
..|++.+..+++++|+||.-|+||+-.|..= .. |.+++...
T Consensus 91 ~~~~~~l~~a~~~~gV~~~~iaAI~~~ES~~G~~~g~~~~~~~l~tla~~~~~r~~~~~~el~~~l~~~~~-~~~~~~~~ 169 (323)
T 4ANR_A 91 NKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSYRVMDALSTLGFDYPPRADFFRKELREFLLLARE-QQVDPLSL 169 (323)
T ss_dssp HHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCCCSEEHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-HTCCGGGC
T ss_pred HHHHHHHHHHHHHHCCChhhEEEEeccccccCcccCCccchhccchhhcCCchhHHHHHHHHHHHHHHHHH-cCCChhhc
Q ss_pred ccCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 49 CKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 49 n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
.. +.+.|-|++||+..||...+.+
T Consensus 170 ~g-----------S~aGA~G~~QfmPst~~~~~~d 193 (323)
T 4ANR_A 170 TG-----------SYAGAMGLPQFMPSSFRAYAVD 193 (323)
T ss_dssp EE-----------CTTCCBTTTTBCHHHHHHHCCC
T ss_pred cC-----------CCCCCCCcCcCChHHHHHHhhh
No 13
>4XP8_A EtgA protein; peptidoglycan hydrolase, hydrolase; HET: MSE; 2.03A {Escherichia coli}
Probab=95.49 E-value=0.058 Score=38.03 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHH
Q FD01543125_046 11 NEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMT 79 (270)
Q Consensus 11 ~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~ 79 (270)
+.|..++++.|++|..+.+++..|..-.. +...+...+ .+.+.|+.|+...+|..
T Consensus 2 ~~~~~~~~~~~v~~~~~~ai~~~Es~~~~-~~~~~~~~~-------------~~~~~G~~q~~~~~~~~ 56 (88)
T 4XP8_A 2 DCFEITGKAYNIDPLILKAIAWNESKNKN-GIKSKINKN-------------GTYNIGIMQINSSHLDL 56 (88)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHSSCC-SCBCCCCTT-------------SCCEETTTTEEGGGHHH
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhhCCCC-CccccCCCC-------------CCcceeecccchhhHHH
No 14
>5O29_A Transglycosylase; lytic transglycosylases, acid/base catalysis, peptidoglycan, bacteria, hydrolase; 1.3785A {Neisseria meningitidis}
Probab=94.67 E-value=0.082 Score=50.93 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCC
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDG 85 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~G 85 (270)
|++.|..++++.+++|.-+.+||..| ..+++..++ ...|.||+|++..|+...+.+-|
T Consensus 436 ~~~~v~~~~~~~~i~p~~~~~l~r~e------s~~~~~~~s-------------~~~a~gl~q~~~~t~~~~a~~~~ 493 (596)
T 5O29_A 436 FKDTVIRHAQNVNVDPAWVYGLIRQE------SRFVIGAQS-------------RVGAQGLMQVMPATAREIAGKIG 493 (596)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH------HTTCTTCBC-------------TTCCBTTTTBCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHH------hcCCCCCCC-------------CCCCCCcccCCHHHHHHHHHHHC
No 15
>PF19489.3 ; SLT_4 ; Transglycosylase SLT domain
Probab=93.35 E-value=0.32 Score=38.81 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCC-------ccccCCCCCCCCCCCCCCchhhhcccccchhH
Q FD01543125_046 6 NVIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPT-------SVCKNSKKSTKENTVYKSSAAGMTQFLNGTWM 78 (270)
Q Consensus 6 N~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~-------S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~ 78 (270)
...+...+..++++.|+++..+++++..|..-.. ....+. ..+ +.|.+.|+.|+...+|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ai~~~es~~~~-~~~~~~~~~~~~~~~~------------~~~~~~G~~q~~~~~~~ 97 (184)
T A0A2Z2NZM7_9GA 31 KRGWHKAAREAEKKWGAPMYIPMAIIYQESTFRA-KVKPARRKLMGFIPWR------------RLSSAYGYAQAIDGTWN 97 (184)
T ss_pred ccchHHHHHHHHHHHCCCcHHHHHHHHHHhccCc-cccchhhcccCCCccc------------ccccccchhhhccccHH
Q ss_pred HHhccCC
Q FD01543125_046 79 TETLRDG 85 (270)
Q Consensus 79 ~~A~~~G 85 (270)
......|
T Consensus 98 ~~~~~~~ 104 (184)
T A0A2Z2NZM7_9GA 98 QYLRSTG 104 (184)
T ss_pred HHHHHhC
No 16
>PF06871.15 ; TraH_2 ; TraH_2
Probab=91.73 E-value=1.9 Score=39.73 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchh------------------------
Q FD01543125_046 12 EIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAA------------------------ 67 (270)
Q Consensus 12 ~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAa------------------------ 67 (270)
.|+..+.+.+++|.-|.+||..| +.|+|...+ ..+...
T Consensus 5 ali~~~a~~~v~p~il~ai~~~E------S~~~p~av~------------~~~~~~~~l~~~p~t~~eA~~~~~~~~~~~ 66 (206)
T O68015_AGRFC/1 5 ALIKECSDPGLKPAIVEQFIERA------GAPDPLAVT------------VRSGNRIVLVPRPTTPDEALALIRQNLGRN 66 (206)
T ss_pred HHHHHHhCcCCCHHHHHHHHHHh------cCCCceeEE------------ccCCCeEEeecCCCCHHHHHHHHHHHhhcC
Q ss_pred ----hhcccccchhHHHhccCCCHHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccc
Q FD01543125_046 68 ----GMTQFLNGTWMTETLRDGTYLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYI 143 (270)
Q Consensus 68 ----GLtQFL~gTW~~~A~~~GT~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l 143 (270)
||+|+-. .
T Consensus 67 ~v~vGlmQi~~----------------------------~---------------------------------------- 78 (206)
T O68015_AGRFC/1 67 IVRVGLTQYPA----------------------------G---------------------------------------- 78 (206)
T ss_pred ceEEEcceech----------------------------h----------------------------------------
Q ss_pred cCCCCCCCCChHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHhcC
Q FD01543125_046 144 TGITPYPVHATAEIQQWLNLRFKPEYAIMAAVDYGVANLASLKMA-GYNIDGLNDAEKAKLIYLTHHLG 211 (270)
Q Consensus 144 ~~~~p~~~~~~~~~~~lL~LR~dpe~sI~aaaDYa~~NL~~L~~~-G~~v~~L~d~ekAK~~YL~HHlG 211 (270)
........+....+||...|..++.|-...++...+. |-...+....+.-..+..+-|-|
T Consensus 79 --------~g~~~~~~~~~~l~Dp~~Ni~~G~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~Ai~aYntG 139 (206)
T O68015_AGRFC/1 79 --------LGIVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPTESEVLPQVFEDAIIAWQTG 139 (206)
T ss_pred --------hCCCccccchhHhhCHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhhHHHHHHHHHhccC
No 17
>4HPE_C Putative cell wall hydrolase Tn916-like,CTn1-Orf17; Two domains protein, Slt/lysozyme-like muramidase, NlpC/P60 LD endopeptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG; HET: OCS, MSE, GOL; 2.38A {Clostridium difficile}
Probab=91.41 E-value=2.8 Score=37.17 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccC
Q FD01543125_046 7 VIYWNEIIRASERSGIIP--QSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRD 84 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~p--qalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~ 84 (270)
..|+..|.+++++.||+| .-|+|||..|.. ..+.|++|+...+
T Consensus 25 ~~~~~~~~~~~~~~~v~~~~~~~~ai~~~ES~---------------------------~~~~~~~q~~~~~-------- 69 (308)
T 4HPE_C 25 LKHQPMVEKYARENGISEYVNVLLAIIQVESG---------------------------GTAEDVMQSSESL-------- 69 (308)
T ss_dssp HTTHHHHHHHHHHTTCGGGHHHHHHHHHHHHT---------------------------TCSSSTTCCTGGG--------
T ss_pred HHcHHHHHHHHHHcCChHHHHHHHHHHHHhcC---------------------------CCCCCcccccccC--------
Q ss_pred CCHHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHHHHHHhc
Q FD01543125_046 85 GTYLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQQWLNLR 164 (270)
Q Consensus 85 GT~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~~lL~LR 164 (270)
.... ...
T Consensus 70 ---------------~~~~----------------------------------------------------------~~~ 76 (308)
T 4HPE_C 70 ---------------GLPP----------------------------------------------------------NSL 76 (308)
T ss_dssp ---------------TCCT----------------------------------------------------------TCS
T ss_pred ---------------CCCC----------------------------------------------------------CcC
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q FD01543125_046 165 FKPEYAIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIY 205 (270)
Q Consensus 165 ~dpe~sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~Y 205 (270)
++|+ +|..+++|-...++.... ....+-.++-..|
T Consensus 77 ~~~~-~i~~~~~~l~~~~~~~~~-----~~~~~~~~~l~aY 111 (308)
T 4HPE_C 77 DTES-SIKQGCKYFASLLSSSKN-----QGIDDLNVAIQSY 111 (308)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHH-----TTCCCHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHHHhhh-----cCCCcHHHHHhhh
No 18
>1GBS_A AUSTRALIAN BLACK SWAN EGG WHITE LYSOZYME; HYDROLASE (O-GLYCOSYL); 1.5A {Cygnus atratus} SCOP: d.2.1.5
Probab=88.74 E-value=1.6 Score=35.72 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCC---CCchhhhcccccchh
Q FD01543125_046 8 IYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVY---KSSAAGMTQFLNGTW 77 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~---~SSAaGLtQFL~gTW 77 (270)
.|...|...+.+.++++..+++++..| ..|++...+ . .+.+.|+.||...+|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~a~~~~e------s~~~~~~~~------------~~~~~~~~~G~~q~~~~~~ 101 (185)
T 1GBS_A 47 RYKTIIKKVGEKLCVEPAVIAGIISRE------SHAGKVLKN------------GWGDRGNGFGLMQVDKRSH 101 (185)
T ss_dssp TSHHHHHHHHHHHTCCHHHHHHHHHHH------HGGGTTCBT------------TBCTTSCEETTTTEETTTS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc------CCCCccccC------------CCCCCCceeeeEEEccccC
No 19
>6TAB_A SLT domain-containing protein; lysozyme peptidoglycan, HYDROLASE; HET: SO4; 1.26A {Bdellovibrio bacteriovorus HD100}
Probab=87.99 E-value=1.8 Score=39.49 Aligned_cols=83 Identities=8% Similarity=-0.043 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCch---------hhhcccccchhH
Q FD01543125_046 8 IYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSA---------AGMTQFLNGTWM 78 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSA---------aGLtQFL~gTW~ 78 (270)
.|...+.+ .+.++++.-+.+|+..| ..|++...+ +.... .||.||...+|.
T Consensus 119 ~~~~~~~~--~~~~~~~~~~~a~~~~E------S~~~~~a~~------------~~g~~~~~g~~~~~~Gl~Q~~~~~~~ 178 (254)
T 6TAB_A 119 KYSSLSYA--QRKQYWAFVLSSMVRFE------SNFKTAMSY------------TEDFNDSNGNRVISRGLLQISIESGN 178 (254)
T ss_dssp TGGGCCHH--HHHHHHHHHHHHHHHHH------HTTCTTCEE------------EEEEECTTSSEEEEETTTTBCHHHHH
T ss_pred chhcCCHH--HHHHHHHHHHHHHHHHH------cCCCCccee------------ecCCcccCCCeeeeeeeeeechhhhh
Q ss_pred HHhccCCCHHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHHH
Q FD01543125_046 79 TETLRDGTYLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEIQ 158 (270)
Q Consensus 79 ~~A~~~GT~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~~ 158 (270)
....+.++...
T Consensus 179 ~~~~~~~~~~~--------------------------------------------------------------------- 189 (254)
T 6TAB_A 179 AYGCGFKSTKD--------------------------------------------------------------------- 189 (254)
T ss_dssp TTTCCCCSGGG---------------------------------------------------------------------
T ss_pred hhCCCCCCHHH---------------------------------------------------------------------
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHH
Q FD01543125_046 159 QWLNLRFKPEYAIMAAVDYGVANLAS 184 (270)
Q Consensus 159 ~lL~LR~dpe~sI~aaaDYa~~NL~~ 184 (270)
++||+.+|.+++.|-...++.
T Consensus 190 -----~~dp~~ni~~~~~~l~~~~~~ 210 (254)
T 6TAB_A 190 -----LHDPLQNLSCGIRILDRWVSR 210 (254)
T ss_dssp -----GGSHHHHHHHHHHHHHHHHHH
T ss_pred -----hcCHHHHHHHHHHHHHHHHHh
No 20
>4M5E_A Uncharacterized protein; toxin, lysozyme fold, Hydrolase, persiplasm; HET: GOL; 1.49A {Pseudomonas aeruginosa}
Probab=87.07 E-value=3.8 Score=42.67 Aligned_cols=102 Identities=21% Similarity=0.129 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCch---------hhhcccccchh
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSA---------AGMTQFLNGTW 77 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSA---------aGLtQFL~gTW 77 (270)
..|++.|.++|++.|++|.-|+|||-.|-.... .- .+... ...+ -|++|.-..|
T Consensus 223 ~~~~~~I~kaA~~ygIDP~LLaAIIf~E~~r~S-~f--eDa~d-------------~~ga~~l~~~dfSIGL~QIKpST- 285 (410)
T 4M5E_A 223 PSRAKVMSAAARKYDLTPQLIGAIILAEQRDQT-RD--EDAKD-------------YQAAVSIKSANTSIGLGQVVVST- 285 (410)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCC-HH--HHHHH-------------HHHHHSTTCCCCEETTTTEEHHH-
T ss_pred hHhHHHHHHHHHHhCCCHHHHHHHHHHHHccCC-Cc--hHHHH-------------HHHHHhccCCCceEEcCCcCHHH-
Q ss_pred HHHhccCCCHHHHHHHHcCCccCCCcccCCCceeecCCCceeccceeecCCccccchhhhhccccccCCCCCCCCChHHH
Q FD01543125_046 78 MTETLRDGTYLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKFQVSTDKWKNLKELTNGRYITGITPYPVHATAEI 157 (270)
Q Consensus 78 ~~~A~~~GT~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F~la~g~~~~~~~l~~~~~l~~~~p~~~~~~~~~ 157 (270)
|+..+.+...-. ..+.....+
T Consensus 286 --------------Ae~Le~l~~~l~---------------------------------------------~~~~~~~sr 306 (410)
T 4M5E_A 286 --------------AIKYELFTDLLG---------------------------------------------QPVRRGLSR 306 (410)
T ss_dssp --------------HHHTTTTTTTSC---------------------------------------------HHHHHHCCH
T ss_pred --------------HHHHhhhhhhhC---------------------------------------------CCCcccCCh
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHH
Q FD01543125_046 158 QQWLNLRFKPEYAIMAAVDYGVANLAS 184 (270)
Q Consensus 158 ~~lL~LR~dpe~sI~aaaDYa~~NL~~ 184 (270)
..+...=+||+..|..++.|-+.-.+.
T Consensus 307 ~~~i~rL~dPe~NI~y~AaYLR~l~~~ 333 (410)
T 4M5E_A 307 KAVATLLASDEFNIFATARYIRYVANL 333 (410)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHH
No 21
>3GXR_D Goose-type lysozyme 1; Atlantic cod, fish lysozyme, active site residues, substrate binding sites, surface potential, muramidase activity, immune system; HET: NAG; 1.7A {Gadus morhua} SCOP: d.2.1.5
Probab=87.04 E-value=2.3 Score=35.57 Aligned_cols=57 Identities=19% Similarity=0.108 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccC----CCccccCCCCCCCCCCCCCCchhhhcccccchh
Q FD01543125_046 6 NVIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWK----PTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTW 77 (270)
Q Consensus 6 N~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~----~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW 77 (270)
+..|...|..++.+.+++|..+.+++..|..-.. .. ..... ..+.+.|+.||...+|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~es~~~~---~~~~~~~~~~~------------~~~~~~G~~q~~~~~~ 103 (187)
T 3GXR_D 43 MEKYKSFINNVAKKHVVDPAVIAAIISRESRAGN---VIFNTTPPGWG------------DNYNGFGLMQVDKRYH 103 (187)
T ss_dssp HGGGHHHHHHHHHHHTCCHHHHHHHHHHHHTTTT---TTTTSSSTTEE------------TTTTEETTTTEETTTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHccCCCc---ccccCCCCCCC------------CCcceeeeEEecCCcC
No 22
>4G9S_A Goose-type lysozyme; hydrolase inhibitor, lysozyme, HYDROLASE-HYDROLASE INHIBITOR complex; HET: FLC; 0.95A {Salmo salar} SCOP: d.2.1.5, l.1.1.1
Probab=84.61 E-value=3.7 Score=34.29 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCcc----ccCCCCCCCCCCCCCCchhhhccccc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSV----CKNSKKSTKENTVYKSSAAGMTQFLN 74 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~----n~~~~~~~~~~~~~~SSAaGLtQFL~ 74 (270)
..|...|..++++.|++|..+++++..| ..|++... . .+++.|+.||+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~a~~~~e------s~~~~~~~~~~~~-------------~~~a~G~~q~~~ 100 (187)
T 4G9S_A 48 NKYKELITRVGQKHGLDPAIIAGIISRE------SRAGSALDHGWGD-------------HGKGFGLMQVDK 100 (187)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHH------HTTTTTCBTTBCT-------------TSCEETTTTEET
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhhc------CCCCcccccCCCC-------------CCCeeeeeEecC
No 23
>PF06737.18 ; Transglycosylas ; Transglycosylase-like domain
Probab=82.55 E-value=2.7 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred CHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 23 IPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 23 ~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
++..+.+|+..| .. |.| ..+ ..+.+.|+.||+.++|...+..
T Consensus 3 ~~~~~~~i~~~e---s~-~~~---~~~------------~~~g~~g~~q~~~~~w~~~~~~ 44 (77)
T Q9L157_STRCO/4 3 LRTDWDAIAACE---SS-GNW---QAN------------TGNGYYGGLQFARSSWIAAGGL 44 (77)
T ss_pred ChhHHHHHHhhc---CC-CCC---CCC------------CCCCCccceeecHHHHHHhcCc
No 24
>PF07182.15 ; DUF1402 ; Protein of unknown function (DUF1402)
Probab=81.66 E-value=36 Score=34.09 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCC-----------Cc-cCCCccccCCCCCCCCCCCCCCchhhhc
Q FD01543125_046 3 LGKNVIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRG-----------GV-WKPTSVCKNSKKSTKENTVYKSSAAGMT 70 (270)
Q Consensus 3 LG~N~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~-----------G~-W~~~S~n~~~~~~~~~~~~~~SSAaGLt 70 (270)
|..|......|..+|++.||+|.-|+++|-.|-..... .- |-..+.. -.....-|.
T Consensus 49 l~~~~~l~~~I~~~A~~~gIdP~~i~~iI~~E~~~n~~~~D~~q~~~l~~~~y~~~~~~------------f~~~G~~~~ 116 (294)
T B9JXW3_AGRVS/2 49 LIKDRQLIGKIKKTAAAYNIDPIHIVGALVGEHTYNVDAYDTLQSYYVKAASYAGHTFR------------FAYDGEDVD 116 (294)
T ss_pred HHHCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhcCCcce------------eeeCCcchH
Q ss_pred ccccchhHHHhcc-CCCHHHHHHHHcCCccCCCcccCCCceeecCCCceecccee------------ecCCccccchhhh
Q FD01543125_046 71 QFLNGTWMTETLR-DGTYLYEKATEQGLVADKPLLNKKGEVVKNKKGEVVNEKKF------------QVSTDKWKNLKEL 137 (270)
Q Consensus 71 QFL~gTW~~~A~~-~GT~Ln~~a~~~G~l~~~~~~~~~~~~~~~k~~~~~~~~~F------------~la~g~~~~~~~l 137 (270)
.|+..-=...|.. +.++..-.|++.=|-..-.. +.-.|..-....| .+--++-++....
T Consensus 117 ~~~~~p~~~~c~~~~~~~~~w~c~e~~~~~~~~~--------k~v~g~~~~~~~~~~~f~~p~~ag~SiG~~QmKPs~Ae 188 (294)
T B9JXW3_AGRVS/2 117 DFVARPEFAACAELKDSAKLWTCRENVWEDKFQG--------KRVGNKSFPNNRFSAVFFQPFYAGQTFGLGQINPLTAL 188 (294)
T ss_pred HHHhChhHHHhHhhccccchHhHHHhhhhHhhCC--------cccCCCcCCCCcchhhccCcccCCCccccCccCHHHHH
Q ss_pred hccccccCCCCCCCCChHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHhcCHHHHH
Q FD01543125_046 138 TNGRYITGITPYPVHATAEIQQWLNLRFKPEYAIMAAVDYGVANLASLKM-AGYNIDGLNDAEKAKLIYLTHHLGLSDAI 216 (270)
Q Consensus 138 ~~~~~l~~~~p~~~~~~~~~~~lL~LR~dpe~sI~aaaDYa~~NL~~L~~-~G~~v~~L~d~ekAK~~YL~HHlG~gdA~ 216 (270)
.....+..+..........+..++..-.||+.+|.-++.|-+.-.+.-++ +|+.+.+ .++-.|-+.=++++.......
T Consensus 189 ~Le~~v~~~~~~~~l~~~~~~~ri~rL~dp~~qi~Y~Aafl~~~~~~~~~~~g~di~~-~~~ilATlYN~G~~~~~a~~~ 267 (294)
T B9JXW3_AGRVS/2 189 MLTDMVHQTSGYPKLDEKDAAGLYKAIMDPDTSLAYIAAIIRKSIDDYKTYANVDISN-NPGLTATLYNVGNSEARARAL 267 (294)
T ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhcCCCccc-CHHHHHHhhhcCCchHHHHHh
Q ss_pred H
Q FD01543125_046 217 H 217 (270)
Q Consensus 217 ~ 217 (270)
+
T Consensus 268 ~ 268 (294)
T B9JXW3_AGRVS/2 268 G 268 (294)
T ss_pred h
No 25
>7K5C_D Peptidoglycan transglycosylase gp16; T7, ejectosome, ejection protein, genome-delivery, podoviridae, VIRAL PROTEIN; 2.7A {Escherichia phage T7}
Probab=80.87 E-value=5.1 Score=45.03 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCCccHHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHH
Q FD01543125_046 1 LMLGKNVIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTE 80 (270)
Q Consensus 1 L~LG~N~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~ 80 (270)
++++....|.+.|..++++.|++|.-+.+++..| ..|++...+ ..++.|+.||...+|...
T Consensus 4 ~~~~~~~~~~~~i~~~~~~~gv~~~~~~~~~~~e------S~~~~~a~s-------------~~ga~Gl~Q~~~~t~~~~ 64 (1318)
T 7K5C_D 4 YDKNVPSDYDGLFQKAADANGVSYDLLRKVAWTE------SRFVPTAKS-------------KTGPLGMMQFTKATAKAL 64 (1318)
T ss_dssp GGTTSCCTTCTTHHHHHHHHCCCHHHHHHHHHHH------HTTCSSCCS-------------SSCCCSSSCCCHHHHHHT
T ss_pred ccccCCchhHHHHHHHHHHHCCCHHHHHHHHHHH------cCCCCCCCC-------------CCCCCCCCccCHHHHHHc
Q ss_pred hccCCCH
Q FD01543125_046 81 TLRDGTY 87 (270)
Q Consensus 81 A~~~GT~ 87 (270)
....+.+
T Consensus 65 g~~~~~~ 71 (1318)
T 7K5C_D 65 GLRVTDG 71 (1318)
T ss_dssp TSCCSSS
T ss_pred CCCCCCC
No 26
>3W6B_A Lysozyme-like chitinolytic enzyme; GH family 23, enzyme, Glycoside hydrolase, chitinase, HYDROLASE; HET: GOL; 1.9A {Ralstonia}
Probab=78.83 E-value=10 Score=31.16 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHhhHhhccCCCccC-CCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhc
Q FD01543125_046 7 VIYWNEIIRASERSGII---PQSIAAVIHSEAAKYRGGVWK-PTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETL 82 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~---pqalAAiI~AEAAk~~~G~W~-~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~ 82 (270)
..|+..|..++...+++ +..+.+++..| ..|+ +...+ ...+.|+.||...+|.....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e------s~~~~~~~~~-------------~~~~~G~~q~~~~~~~~~~~ 100 (183)
T 3W6B_A 40 SRIWTYVMNADNAYGKGGDFALLLSAVIKKE------SYFGDGLSGS-------------PSAGDGLMQVEPNTRNAYLS 100 (183)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHHHHHH------HGGGTSCTTC-------------TTGGGTTTTCCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHH------hccCCccCCC-------------CCCCCCcccccHhHHHHHHH
Q ss_pred cCC
Q FD01543125_046 83 RDG 85 (270)
Q Consensus 83 ~~G 85 (270)
..+
T Consensus 101 ~~~ 103 (183)
T 3W6B_A 101 QFS 103 (183)
T ss_dssp HHH
T ss_pred Hhc
No 27
>4CGE_E RESUSCITATION-PROMOTING FACTOR RPFE; SECRETED PROTEIN, HYDROLASE; 2.756A {MYCOBACTERIUM TUBERCULOSIS} SCOP: d.2.1.0
Probab=74.40 E-value=3.4 Score=28.46 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhcc
Q FD01543125_046 24 PQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLR 83 (270)
Q Consensus 24 pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~ 83 (270)
|....+|+..| .. |.|+. + ..+...|+.||+..||...+..
T Consensus 1 ~~~~~~i~~~E---S~-~~~~~---~------------~~~g~~G~~q~~~~tw~~~~~~ 41 (75)
T 4CGE_E 1 SVNWDAIAQCE---SG-GNWSI---N------------TGNGYYGGLRFTAGTWRANGGS 41 (75)
T ss_dssp --CCHHHHHHH---TS-SCSCC---C------------CSSSEETTTTEEHHHHHTTTCC
T ss_pred CCcHHHHHhHh---cC-CCCCC---C------------CCCCCcceeeecHHHHHHcCCC
No 28
>1XSF_A Probable resuscitation-promoting factor rpfB; LYSOZYME-LIKE STRUCTURE, CELL CYCLE, HYDROLASE; NMR {Mycobacterium tuberculosis} SCOP: d.2.1.8
Probab=72.83 E-value=6.2 Score=30.29 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHh
Q FD01543125_046 21 GIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTET 81 (270)
Q Consensus 21 Gi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A 81 (270)
|.+...+..|+..|.. |.|+. + ..+...|+.||+.++|....
T Consensus 25 ~~~~~~~~~i~~cES~----g~~~~---~------------~~~g~~G~~q~~~~tw~~~~ 66 (108)
T 1XSF_A 25 VIDGSIWDAIAGCEAG----GNWAI---N------------TGNGYYGGVQFDQGTWEANG 66 (108)
T ss_dssp CTTHHHHHHHCCCCCS----SCTTC---C------------CSSSBCTTTCCBHHHHHHTT
T ss_pred CCChHHHHHHHhhccC----CCCCC---C------------CCCCCeeeeeecHHHHHHhC
No 29
>8GFH_A Lytic transglycosylase domain-containing protein; soluble lytic transglycosylase, inhibitor, LYASE, LYASE-LYASE Inhibitor complex; HET: ZIA, CIT; 1.83A {Campylobacter jejuni}
Probab=71.41 E-value=11 Score=38.56 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhc-cCC
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETL-RDG 85 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~-~~G 85 (270)
|++.|..++.+ .|.-+.|||..| ..+++..++ .+.|.||.|++..|....+. .-|
T Consensus 371 ~~~~~~~~~~~---~~~l~~ai~r~E------S~f~~~a~S-------------~~gA~GlmQ~~p~ta~~~~~~~~g 426 (544)
T 8GFH_A 371 YYDNIKDYNKT---RQALILAIARQE------SRFIPTAIS-------------VSYALGMMQFMPFLANHIGEKELK 426 (544)
T ss_pred cHHHHHHHHHH---CHHHHHHHHHHH------cCCCCCCCC-------------ccccccccccCHHHHHHHHHHHhC
No 30
>2N5Z_A Resuscitation-promoting factor RpfC; resuscitation promoting factor, RpfC, HYDROLASE; NMR {Mycobacterium tuberculosis} SCOP: l.1.1.1, d.2.1.0
Probab=68.02 E-value=7.8 Score=27.68 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccC
Q FD01543125_046 19 RSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRD 84 (270)
Q Consensus 19 RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~ 84 (270)
|.+-+.....+|+..|. . |.|+. + ..+...|+.||...||...+...
T Consensus 1 ~~~~~~~~~~~i~~cEs---~-~~~~~---~------------~~~g~~G~~q~~~~tw~~~~~~~ 47 (82)
T 2N5Z_A 1 GAMGPSPNWDAVAQCES---G-GNWAA---N------------TGNGKYGGLQFKPATWAAFGGVG 47 (82)
T ss_dssp CCSCCCCCHHHHHHHHT---S-SCTTC---T------------TCSSCBTTTTBCHHHHGGGTSSS
T ss_pred CCCCCchhHHHHHhHhc---C-CCCCC---c------------CCCCCceeeeeCHHHHHHhCCCC
No 31
>4EMN_B Probable resuscitation-promoting factor rpfB; alpha beta, hydrolase; HET: BEN, SO4; 1.17A {Mycobacterium tuberculosis} SCOP: d.2.1.8
Probab=60.48 E-value=10 Score=26.39 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHh
Q FD01543125_046 25 QSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTET 81 (270)
Q Consensus 25 qalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A 81 (270)
..+.+|+..|. . |.|+. + ..+...|+.||+.++|...+
T Consensus 2 ~~~~~i~~~es---~-~~~~~---~------------~~~g~~G~~q~~~~~w~~~~ 39 (81)
T 4EMN_B 2 SIWDAIAGCEA---G-GNWAI---N------------TGNGYYGGVQFDQGTWEANG 39 (81)
T ss_dssp CHHHHHHHHHH---T-TCTTC---C------------CSSSCBTTTTBCHHHHHHTT
T ss_pred chhHHHHhhcc---C-CCCCC---C------------CCCCCeeeeeecHHHHHHcC
No 32
>4FDY_B Similar to lipoprotein, NLP/P60 family; Slt/lysozyme-like muramidase, NlpC/P60 LD endopeptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative; HET: MSE, OCS; 2.23A {Staphylococcus aureus subsp. aureus}
Probab=59.45 E-value=24 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHhhH
Q FD01543125_046 7 VIYWNEIIRASERSGIIP--QSIAAVIHSE 34 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~p--qalAAiI~AE 34 (270)
..|...|.+++++.|++| .-|++||..|
T Consensus 27 ~~~~~~i~~~~~~~gv~~~~~~~~ai~~~e 56 (313)
T 4FDY_B 27 LAHRPLIEKYGKEYGIEDYVSYILAIMQVE 56 (313)
T ss_dssp HTTHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHcHHHHHHHHHHHCChHHHHHHHHHHHHh
No 33
>1QSA_A PROTEIN (SOLUBLE LYTIC TRANSGLYCOSYLASE SLT70); ALPHA-SUPERHELIX, TRANSFERASE; HET: SO4, GOL; 1.65A {Escherichia coli} SCOP: d.2.1.6, a.118.5.1
Probab=58.48 E-value=27 Score=34.39 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHhccCC
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTETLRDG 85 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A~~~G 85 (270)
|+..+...+.+.++++..+.+++..| +.+++...+ ...+.|+.|+...|+...+..-|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~e------s~~~~~~~~-------------~~ga~G~~q~~~~~~~~~~~~~~ 510 (618)
T 1QSA_A 453 YNDLFKRYTSGKEIPQSYAMAIARQE------SAWNPKVKS-------------PVGASGLMQIMPGTATHTVKMFS 510 (618)
T ss_dssp THHHHHHHHTTSSSCHHHHHHHHHHH------HTTCTTCBC-------------TTCCBTTTTBCHHHHHHHHHHHT
T ss_pred hHHHHHHHHccCCCCHHHHHHHHHHH------hcCCCCCCC-------------CCCCccccccCHhHHHHHHHHcC
No 34
>4OW1_W Resuscitation-promoting factor RpfC; Resuscitation Promoting Factor, Peptidoglycan, Transglycosylase, HYDROLASE; 1.9A {Mycobacterium tuberculosis} SCOP: d.2.1.0
Probab=47.24 E-value=33 Score=26.44 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchhHHHh
Q FD01543125_046 23 IPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTWMTET 81 (270)
Q Consensus 23 ~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW~~~A 81 (270)
++....+|+..| .. |.|+. + ..+...|+.||..+||...+
T Consensus 2 ~~~~w~~ia~cE---S~-g~~~a---~------------~~~g~~G~~q~~~~tw~~~~ 41 (92)
T 4OW1_W 2 PSPNWDAVAQCE---SG-GNWAA---N------------TGNGKYGGLQFKPATWAAFG 41 (92)
T ss_dssp CCCCHHHHHHHH---HS-SCTTC---C------------CSSSCBTTTTBCHHHHHHTT
T ss_pred CchhHHHHHhhh---cC-CCCCC---C------------CCCCCcccccccHHHHHHhC
No 35
>8EJ5_A gp10, tail tip lysin (spike); phage tail, VIRUS; 4.9A {Staphylococcus phage Andhra}
Probab=42.61 E-value=62 Score=34.15 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHhhH
Q FD01543125_046 4 GKNVIYWNEIIRASERSGIIPQSIAAVIHSE 34 (270)
Q Consensus 4 G~N~~Yr~~Ii~Aa~RtGi~pqalAAiI~AE 34 (270)
|....+.+.|++++++.||+|.-++||+-.|
T Consensus 41 ~~~~~~~~~~~~~~k~~gi~p~lf~ai~~~E 71 (473)
T 8EJ5_A 41 GNSSTKIKQVLNAVKSIGVSPALFAAYEKNE 71 (473)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHh
No 36
>PF20306.2 ; Sp-DndD ; Small protein found in certain Dnd DNA modification systems
Probab=42.27 E-value=81 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhhH
Q FD01543125_046 10 WNEIIRASERSGIIPQSIAAVIHSE 34 (270)
Q Consensus 10 r~~Ii~Aa~RtGi~pqalAAiI~AE 34 (270)
+..|.+.+++.|+|+.-+..+|+.|
T Consensus 3 ~~lL~~ic~~~~v~~eli~~Ll~~e 27 (50)
T A0A150MC83_9BA 3 EKLLHEICEKHEVNPKYLEILIKLE 27 (50)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
No 37
>3KK4_B uncharacterized protein BP1543; Structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: CME, MSE; 1.95A {Bordetella pertussis Tohama I}
Probab=36.97 E-value=1.1e+02 Score=27.34 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhhHhhccCCCccCCCc
Q FD01543125_046 7 VIYWNEIIRASERSGIIPQSIAAVIHSEAAKYRGGVWKPTS 47 (270)
Q Consensus 7 ~~Yr~~Ii~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S 47 (270)
..||++|.+.|++-|++...|..-|+.|+....++..|-.|
T Consensus 36 ~~fW~aLe~IA~~eg~sl~~Lv~~I~~~~~~~~~~~~nlsS 76 (125)
T 3KK4_B 36 QLFWDVLEEIAARDGMRVTQLIERLYDELVQYRGEAANFTS 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHSSCTTHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCHHH
No 38
>PF00216.25 ; Bac_DNA_binding ; Bacterial DNA-binding protein
Probab=34.36 E-value=1.3e+02 Score=22.27 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 10 WNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 10 r~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
.+.+...++++|+++..+.+++++
T Consensus 4 ~~l~~~ia~~~~~~~~~~~~~l~~ 27 (90)
T A0L640_MAGMM/1 4 GELKKIVADKTGMSQADAGRAVAA 27 (90)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
No 39
>PF16805.9 ; Trans_coact ; Phage late-transcription coactivator
Probab=32.34 E-value=78 Score=25.42 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHh
Q FD01543125_046 4 GKNVIYWNEIIRASERSGIIPQSIAAVIH 32 (270)
Q Consensus 4 G~N~~Yr~~Ii~Aa~RtGi~pqalAAiI~ 32 (270)
|.|-.|-++|+..+++.+|.|..++-+|+
T Consensus 16 ~~~~sYidAi~~~cEe~~ie~e~v~klI~ 44 (69)
T M1U9Z1_9CAUD/1 16 RGDINYIEAIVCFCEDNEIEIESVPKLLS 44 (69)
T ss_pred CCCccHHHHHHHHHHHCCCChHHHHHhCC
No 40
>3OTP_L Lysozyme C; typsin-like protease domain PDZ domains, protease, HYDROLASE; 3.76A {Escherichia coli}
Probab=30.05 E-value=1.1e+02 Score=20.19 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhccc
Q FD01543125_046 21 GIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQF 72 (270)
Q Consensus 21 Gi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQF 72 (270)
++++..+.+|+..|..-.. ...+.+ . ..|..-||.|.
T Consensus 8 ~~~~~~~~~ia~~eS~~~~-~~~~~~--~------------~g~~~~GlfQI 44 (44)
T 3OTP_L 8 GYSLGNWVSAAKFESNFNT-QATNRN--T------------DGSTDYGILQI 44 (44)
T ss_pred CCCHHHHHHHHHHHcCCCC-CceecC--C------------CCCceEeeeeC
No 41
>1B8Z_B PROTEIN (HISTONELIKE PROTEIN HU); THERMOTOGA MARITIMA, THERMOSTABLE DNA BINDING PROTEIN, DNA BINDING PROTEIN; 1.6A {Thermotoga maritima} SCOP: a.55.1.1
Probab=28.77 E-value=1.9e+02 Score=21.18 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
..+.+...++++++++..+.+++++
T Consensus 3 ~~~l~~~i~~~~~~~~~~~~~~~~~ 27 (90)
T 1B8Z_B 3 KKELIDRVAKKAGAKKKDVKLILDT 27 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
No 42
>PF10911.12 ; T7-like_Y65 ; Bacteriophage T7-like gene 6.5
Probab=28.05 E-value=1.8e+02 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred CCChHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHcCC
Q FD01543125_046 151 VHATAEIQQWLNLRFKPEYAIMAAVDYGVANLASLKMAGY 190 (270)
Q Consensus 151 ~~~~~~~~~lL~LR~dpe~sI~aaaDYa~~NL~~L~~~G~ 190 (270)
+..+....+-|.-||++++.+.+.+ ++.|+++|+
T Consensus 16 P~Ip~~~~eyL~~r~n~~Yl~~~G~------l~~lr~~G~ 49 (77)
T A0A088F7Z4_9CA 16 PDVPRATAEYLQVRFNYAYLEASGH------IGLMRANGC 49 (77)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhcc------HHHHHHcCC
No 43
>2NDP_B Histone-like DNA-binding superfamily protein; Histone-like protein, DNA BINDING PROTEIN; NMR {Mycoplasma gallisepticum S6} SCOP: a.55.1.0
Probab=27.00 E-value=2e+02 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
..+.+...++++|+++..+.+++++
T Consensus 9 ~~~l~~~ia~~~~~~~~~~~~~l~~ 33 (99)
T 2NDP_B 9 AAEYLKEMADETNIKVQDIRLVVTS 33 (99)
T ss_dssp HHHHHHHSCSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
No 44
>1OWF_A Integration Host Factor Alpha-subunit; protein-DNA recognition, indirect readout, IHF, DNA bending, minor groove, TRANSCRIPTION-DNA COMPLEX; 1.95A {Escherichia coli} SCOP: a.55.1.1
Probab=26.85 E-value=2.1e+02 Score=21.94 Aligned_cols=25 Identities=4% Similarity=-0.035 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
..+.+...++++|+++..+-+++++
T Consensus 5 ~~~l~~~ia~~~~~~~~~~~~~l~~ 29 (99)
T 1OWF_A 5 KAEMSEYLFDKLGLSKRDAKELVEL 29 (99)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
No 45
>1MUL_A DNA binding protein HU-alpha; histone-like, DNA BINDING PROTEIN; 2.3A {Escherichia coli} SCOP: a.55.1.1
Probab=26.70 E-value=1.9e+02 Score=21.39 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 11 NEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 11 ~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
+.+...++++|+++..+.+++++
T Consensus 5 ~l~~~i~~~~~~~~~~~~~~~~~ 27 (90)
T 1MUL_A 5 QLIDVIAEKAELSKTQAKAALES 27 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
No 46
>PF18896.4 ; SLT_3 ; Lysozyme like domain
Probab=26.06 E-value=1.9e+02 Score=19.03 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred HHHHHHCCCHHHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchh
Q FD01543125_046 15 RASERSGIIPQSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTW 77 (270)
Q Consensus 15 ~Aa~RtGi~pqalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW 77 (270)
.+....|+++..+..++..=..... +.+...... ..+.+.|+.|+...+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~~~~~~s~-~~~~~~~~~------------~~~~~~G~~q~~~~~~ 51 (84)
T A0A1H8XES0_9PS 2 SVGRAAGFTGDDFVTAVAVAMAESR-CDPLARGVN------------SGSIDRGLWQINNVYH 51 (84)
T ss_pred chhHHcCCCHHHHHHHHHHHHHhcC-CCCCccCCC------------CCCeeEEEEEEecccC
No 47
>PF13702.10 ; Lysozyme_like ; Lysozyme-like
Probab=25.95 E-value=2.3e+02 Score=22.55 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchh
Q FD01543125_046 8 IYWNEIIRASERSGIIP--QSIAAVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTW 77 (270)
Q Consensus 8 ~Yr~~Ii~Aa~RtGi~p--qalAAiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW 77 (270)
.|...+..++.+.|+++ ..+++++..|..... . |+.||...++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~es~~~~----------------------~-----G~~q~~~~~~ 49 (161)
T A4VUN1_STRSY/2 5 TYQTMVQEVLAENDTPANEELVLAMIYTETKGQE----------------------A-----DVMQSSESAT 49 (161)
T ss_pred hhHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC----------------------C-----CCcccccccc
No 48
>PF12523.12 ; DUF3725 ; Protein of unknown function (DUF3725)
Probab=25.66 E-value=1.1e+02 Score=25.61 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=0.0 Template_Neff=3.300
Q ss_pred CCCCCHHHHHHHHHHHHhcCHHHHHHHHhCC
Q FD01543125_046 192 IDGLNDAEKAKLIYLTHHLGLSDAIHFIKNN 222 (270)
Q Consensus 192 v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~t 222 (270)
..+.+-.+=||++||+-+.-..+++.||+++
T Consensus 2 ~~~f~i~~ga~~~~l~~~~~~e~~R~flegt 32 (74)
T B1PM22_PRSVW/4 2 VGEFIVSEGAKILQLVQIGNATIGRTFLEGD 32 (74)
T ss_pred cceeecchHHHHHHHHHhccchHHHHHHhCC
No 49
>5L8Z_A DNA-binding protein; thermostable, DNA-binding, HU-protein, Spiroplasma melliferum, histone-like, NAP, DNA binding protein; 1.4A {Spiroplasma melliferum KC3} SCOP: l.1.1.1, a.55.1.0
Probab=25.30 E-value=2e+02 Score=21.88 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASER--SGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~R--tGi~pqalAAiI~A 33 (270)
..+.+.+.+++ +|+++..+..++++
T Consensus 5 ~~~l~~~ia~~~~~~~~~~~v~~vl~~ 31 (96)
T 5L8Z_A 5 KKELAAQIAEKFTDVLSKTHAEEITNF 31 (96)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
No 50
>PF13772.10 ; AIG2_2 ; AIG2-like family
Probab=25.19 E-value=1.7e+02 Score=22.51 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q FD01543125_046 2 MLGKNVIYWNEIIRASERSGIIPQSIAAV 30 (270)
Q Consensus 2 ~LG~N~~Yr~~Ii~Aa~RtGi~pqalAAi 30 (270)
.++++..|.+.|+..+...|+++.-|..|
T Consensus 73 ~~~p~~~Y~~~i~~ga~~~g~~~~y~~~l 101 (101)
T B4N450_DROWI/1 73 SRQPSKTYLKCLVKGAIESSIPQSYIQRL 101 (101)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHhhC
No 51
>5FBM_A DNA-binding protein HU; Histone-like protein, DNA binding, Dimerization, DNA BINDING PROTEIN; 1.9A {Streptococcus mutans serotype c (strain ATCC 700610 / UA159)} SCOP: l.1.1.1, a.55.1.0
Probab=24.91 E-value=2.1e+02 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 10 WNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 10 r~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
.+.+...++++|++...+..++++
T Consensus 5 ~~l~~~ia~~~~l~~~~~~~vl~~ 28 (99)
T 5FBM_A 5 QDLIAKVAEATELTKKDSAAAVDA 28 (99)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
No 52
>4P3V_A DNA-binding protein HU-beta; Histone-like, homodimer, DNA BINDING PROTEIN; 1.25A {Escherichia coli} SCOP: a.55.1.1
Probab=24.39 E-value=2.1e+02 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 10 WNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 10 r~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
.+.+...++++|+++..+.++|++
T Consensus 4 ~~l~~~i~~~~~l~~~~~~~~~~~ 27 (90)
T 4P3V_A 4 SQLIDKIAAGADISKAAAGRALDA 27 (90)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHH
No 53
>1WTU_A TRANSCRIPTION FACTOR 1; TRANSCRIPTION FACTOR, TYPE II DNA-BINDING PROTEIN; NMR {Bacillus phage SPO1} SCOP: a.55.1.1
Probab=24.30 E-value=2.2e+02 Score=21.60 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 10 WNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 10 r~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
.+.+...++++|++...+.+++++
T Consensus 4 ~~l~~~i~~~~~is~~~~~~~~~~ 27 (99)
T 1WTU_A 4 TELIKAIAQDTELTQVSVSKMLAS 27 (99)
T ss_dssp HHHHHHHHTSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
No 54
>6N2L_A Histone family protein DNA-binding protein; SSGCID, Burkholderia ambifaria, Histone family, DNA binding protein, Structural Genomics, Seattle Structural Genomics Center for Infectious; 1.85A {Burkholderia ambifaria (strain MC40-6)} SCOP: l.1.1.1, a.55.1.0
Probab=23.84 E-value=2.5e+02 Score=21.99 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
+.+.+.+.+++++++...+..++++
T Consensus 11 ~~~~~~~ia~~~~~~~~~~~~vl~~ 35 (100)
T 6N2L_A 11 KQELIDAVAAQTGASKAQTGETLDT 35 (100)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
No 55
>PF12554.12 ; MOZART1 ; Mitotic-spindle organizing gamma-tubulin ring associated
Probab=22.78 E-value=1.1e+02 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred HHCCCHHHHHHHH
Q FD01543125_046 19 RSGIIPQSIAAVI 31 (270)
Q Consensus 19 RtGi~pqalAAiI 31 (270)
+.|+.|.++|.+|
T Consensus 31 e~GvnPeaLA~vi 43 (47)
T N1Q4P1_DOTSN/2 31 ENGVSPESLAKVV 43 (47)
T ss_pred HCCCCHHHHHHHH
No 56
>PF11203.12 ; EccE ; Putative type VII ESX secretion system translocon, EccE
Probab=21.62 E-value=1.1e+02 Score=25.09 Aligned_cols=61 Identities=23% Similarity=0.128 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred ChHHHHHHHHhccCHHH--------------HHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCHH
Q FD01543125_046 153 ATAEIQQWLNLRFKPEY--------------AIMAAVDYGVANLASLKMAGYNIDGLNDAEKAKLIYLTHHLGLS 213 (270)
Q Consensus 153 ~~~~~~~lL~LR~dpe~--------------sI~aaaDYa~~NL~~L~~~G~~v~~L~d~ekAK~~YL~HHlG~g 213 (270)
....+..||.+|+||.- .-.+.+.=+..=.+.|++.|+...-|+.+|+.-..=...|..+.
T Consensus 1 a~a~r~tWl~vRld~~~~~~a~~~RGgg~~~~~~al~~a~~Rl~~~L~~~g~~a~~L~a~el~~~~~~~~~~~~~ 75 (90)
T V9XF77_9NOCA/8 1 AAAERTVRVVLRLDVTSCAAAAARRGGGSEGAARTVVAAARRVIRALGDAGYGARLLTASEIEQAALRISHGVPA 75 (90)
T ss_pred CCcceeEEEEEEEehhhhHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHHHhCCCCc
No 57
>1PGY_A Swa2p; UBA, ubiquitin, Swa2, auxilin, ubiquitin-associated domain, PROTEIN BINDING; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.53 E-value=3.8e+02 Score=20.93 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred CCCCCHHHHHHHHHHHHhcCHHHHHHHHhCCCCHHHHHHHHHHH
Q FD01543125_046 192 IDGLNDAEKAKLIYLTHHLGLSDAIHFIKNNITEGKAKELLIAQ 235 (270)
Q Consensus 192 v~~L~d~ekAK~~YL~HHlG~gdA~~Fi~~ti~~~~A~~LL~aQ 235 (270)
|++.-|-|.||+|=|+ +....|..|...++.-++.-+....+
T Consensus 3 vDEVkDMEiAkLMSLG--lSid~A~~~Yd~Gi~Ye~~l~~~~~k 44 (47)
T 1PGY_A 3 VDEVKDMEIARLMSLG--LSIEEATEFYENDVTYERYLEILKSK 44 (47)
T ss_dssp SHHHHHHHHHHHHHHC--CCSHHHHHHHHHHCSSHHHHHHHHHS
T ss_pred hhhhhHHHHHHHHhCC--CCHHHHHHHHHcCccHHHHHHHHHHH
No 58
>2FBD_B Lysozyme 1; Digestive Lysozime, Musca domestica, HYDROLASE; HET: PEG, SO4; 1.9A {Musca domestica} SCOP: d.2.1.0
Probab=21.25 E-value=1.1e+02 Score=25.00 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHCCCHHHHH---HHHhhHhhccCCCccCCCccccCCCCCCCCCCCCCCchhhhcccccchh
Q FD01543125_046 12 EIIRASERSGIIPQSIA---AVIHSEAAKYRGGVWKPTSVCKNSKKSTKENTVYKSSAAGMTQFLNGTW 77 (270)
Q Consensus 12 ~Ii~Aa~RtGi~pqalA---AiI~AEAAk~~~G~W~~~S~n~~~~~~~~~~~~~~SSAaGLtQFL~gTW 77 (270)
.|..+.++.|++...|. +|+..|..-.. +..++...+ .|.--||.|+=+..|
T Consensus 7 e~~~~l~~~~~~~~~l~~~~cia~~ES~~~~-~a~~~~~~~-------------gs~~~GlfQin~~~w 61 (122)
T 2FBD_B 7 SLAREMYALGVPKSELPQWTCIAEHESSYRT-NVVGPTNSN-------------GSNDYGIFQINNYYW 61 (122)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHTTBT-TCBCCCCTT-------------SCCEETTTTEETTTT
T ss_pred HHHHHHHHcCCChhHHcceeeeeeeccCCCc-cccCCCCCC-------------CCceeEEEEEcCcee
No 59
>1P71_A DNA-binding protein HU; protein-DNA complex, DNA bending, HU, DNA Binding Protein-DNA COMPLEX; 1.9A {Anabaena sp.} SCOP: a.55.1.1
Probab=20.20 E-value=3.4e+02 Score=20.23 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHhh
Q FD01543125_046 9 YWNEIIRASERSGIIPQSIAAVIHS 33 (270)
Q Consensus 9 Yr~~Ii~Aa~RtGi~pqalAAiI~A 33 (270)
..+.+...++++|+++..+.+++++
T Consensus 3 ~~~l~~~is~~~~~~~~~~~~v~~~ 27 (94)
T 1P71_A 3 KGELVDAVAEKASVTKKQADAVLTA 27 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH