Query FD01845385_00985 hypothetical protein
Match_columns 201
No_of_seqs 75 out of 81
Neff 4.80857
Searched_HMMs 86581
Date Tue Feb 27 23:39:30 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8457203.hhr -oa3m ../results/8457203.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01785.21 ; Closter_coat ; Cl 45.2 22 0.00025 30.9 1.3 30 16-49 142-171 (194)
2 3AYH_A DNA-directed RNA polyme 42.7 2.5E+02 0.0029 22.4 6.8 66 19-84 54-131 (136)
3 PF17363.6 ; DUF5388 ; Family o 39.8 1.6E+02 0.0018 21.5 4.8 44 37-80 10-53 (65)
4 PF14069.10 ; SpoVIF ; Stage VI 35.1 1.8E+02 0.0021 22.0 4.6 39 48-86 24-62 (72)
5 7ANE_p mS23; Ribosome, Mitocho 32.2 84 0.00097 30.8 3.0 46 45-94 131-176 (321)
6 6SGA_Cb mS23; mitochondrial ri 32.1 80 0.00093 30.8 2.8 46 45-94 131-176 (311)
7 PF04583.16 ; Baculo_p74 ; Bacu 31.4 6.4E+02 0.0074 23.4 9.2 82 55-136 22-110 (213)
8 6YNX_P ATPTT10; mitochondria, 31.0 76 0.00088 28.0 2.3 93 73-171 26-126 (152)
9 2F5U_A Virion protein UL25; HS 30.1 36 0.00042 34.6 0.3 9 161-169 428-436 (447)
10 7NXP_A Capsid vertex component 28.4 38 0.00044 34.8 0.2 9 161-169 446-454 (479)
11 6PPB_l Capsid vertex component 26.8 43 0.00049 35.1 0.2 9 161-169 530-538 (549)
12 6VN1_A Envelope glycoprotein B 26.7 1.5E+03 0.018 26.2 11.9 109 48-160 708-824 (931)
13 6W2D_w Capsid vertex component 26.5 43 0.0005 35.2 0.2 9 161-169 551-559 (570)
14 5ZZ8_s UL25; Herpes simplex vi 26.2 44 0.00051 35.3 0.2 9 161-169 566-574 (585)
15 7ETJ_O Capsid vertex component 26.1 46 0.00053 35.5 0.3 9 161-169 624-632 (642)
16 PF03874.20 ; RNA_pol_Rpb4 ; RN 25.6 6.8E+02 0.0078 21.8 7.4 66 19-84 64-156 (160)
17 PF01706.20 ; FliG_C ; FliG C-t 25.5 66 0.00076 24.5 1.0 35 146-180 3-39 (108)
18 7FJ1_c DNA packaging tegument 25.3 45 0.00052 34.9 0.0 9 161-169 516-524 (534)
19 PF18689.5 ; PriX ; Primase X 23.8 1.2E+02 0.0013 24.9 2.1 16 144-159 78-93 (95)
20 PF10689.13 ; DUF2496 ; Protein 23.0 3.4E+02 0.004 19.3 3.9 29 43-71 15-43 (43)
21 5IR0_B Uncharacterized protein 22.0 1.4E+02 0.0016 26.1 2.3 39 162-201 110-148 (161)
22 PF06207.15 ; DUF1002 ; Protein 20.3 2.8E+02 0.0033 25.5 4.0 38 45-82 162-199 (221)
No 1
>PF01785.21 ; Closter_coat ; Closterovirus coat protein
Probab=45.20 E-value=22 Score=30.94 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CcchHHHHHHcccCCCCcccchhHHHHHHHHHHh
Q FD01845385_009 16 VPLDYGYLIYGIFDTDTRYERETERIRIMTAIRH 49 (201)
Q Consensus 16 vP~DlgYL~y~f~DTd~R~~n~~e~~Rl~~~IK~ 49 (201)
+|....|++.||+|.+ .-+|.+|.+.+..+
T Consensus 142 vp~~~~~~a~DF~~~~----~~t~~e~~a~~~ak 171 (194)
T CAPSD_CTV36/27 142 IPAGYHYLCADFLTGA----GLTDLECAVYIQAK 171 (194)
T ss_pred CCCCcccccCCccCcC----CCCHHHHHHHHHHH
No 2
>3AYH_A DNA-directed RNA polymerase III subunit rpc9; Transcription; HET: SO4; 2.193A {Schizosaccharomyces pombe}
Probab=42.73 E-value=2.5e+02 Score=22.42 Aligned_cols=66 Identities=6% Similarity=0.058 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hHHHHHHcccCCC--CcccchhHHHHHHHHHHhhccCHHHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHh
Q FD01845385_009 19 DYGYLIYGIFDTD--TRYERETERIRIMTAIRHDILNYENIVNAVK----------LIFQLFNKYLSEPEQNNVYRSV 84 (201)
Q Consensus 19 DlgYL~y~f~DTd--~R~~n~~e~~Rl~~~IK~gi~n~~~i~k~I~----------ii~~~F~~~l~~~~~~~i~~~~ 84 (201)
.+.|-.++|+..- .+..+...-..+.+.++...+....+..+++ .++++...++++++++++.+-+
T Consensus 54 ~i~~~~~~Yl~~~~~~~~~~~~~~~~~~~~L~~~~Lt~~E~~~iiNl~P~s~~el~~ii~~~~~r~~~e~~~~il~~v 131 (136)
T 3AYH_A 54 TIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKI 131 (136)
T ss_dssp HHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHhhcHHHhCCHHHHHHHHHHH
No 3
>PF17363.6 ; DUF5388 ; Family of unknown function (DUF5388)
Probab=39.81 E-value=1.6e+02 Score=21.52 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred hhHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q FD01845385_009 37 ETERIRIMTAIRHDILNYENIVNAVKLIFQLFNKYLSEPEQNNV 80 (201)
Q Consensus 37 ~~e~~Rl~~~IK~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~~i 80 (201)
+.+..--+.++++-+...+...++|+..++.+...+++++++..
T Consensus 10 ~~~t~~~l~AL~~~l~~~~~~~e~i~~lid~yi~~Ls~~ek~~f 53 (65)
T A0A0F4KPW2_9LA 10 DNHTRNAVLALARATADKRTASEMVSILVESFLDNMTPSKLKIY 53 (65)
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCHHHHHHH
No 4
>PF14069.10 ; SpoVIF ; Stage VI sporulation protein F
Probab=35.05 E-value=1.8e+02 Score=21.96 Aligned_cols=39 Identities=0% Similarity=0.140 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HhhccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhH
Q FD01845385_009 48 RHDILNYENIVNAVKLIFQLFNKYLSEPEQNNVYRSVGT 86 (201)
Q Consensus 48 K~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~~i~~~~~g 86 (201)
+....+++.++++|..+-....+.+++++.+++.+.+..
T Consensus 24 ~~dL~de~~~r~lI~~ls~~~~~~vs~eqe~~iv~~i~~ 62 (72)
T Q81FR3_BACCR/9 24 NANLRDETVLRQLIHQVALMAGREVPKEQEDQIVKAIIN 62 (72)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
No 5
>7ANE_p mS23; Ribosome, Mitochondria, Kinetoplastid; HET: NAD; 3.9A {Leishmania major}
Probab=32.22 E-value=84 Score=30.78 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHHHHHH
Q FD01845385_009 45 TAIRHDILNYENIVNAVKLIFQLFNKYLSEPEQNNVYRSVGTSIAGRIGT 94 (201)
Q Consensus 45 ~~IK~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~~i~~~~~gs~~Gr~~~ 94 (201)
.+.++|+.. ..+|+.|++.|++.+..++.-...+.--.++.||+++
T Consensus 131 ~Lkr~Gv~H----~~AikkVlq~fY~~laVkkRVaaIQAEEAKLSGkfIT 176 (321)
T 7ANE_p 131 ELERKGVAH----SVAIKRVLQMFYDELTVKKRVAAIQAEEAKLSGKYIS 176 (321)
T ss_pred HHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
No 6
>6SGA_Cb mS23; mitochondrial ribosome, assembly intermediate, translation, RIBOSOME; HET: UBD, PM8; 3.1A {Trypanosoma brucei brucei}
Probab=32.07 E-value=80 Score=30.80 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHHHHHH
Q FD01845385_009 45 TAIRHDILNYENIVNAVKLIFQLFNKYLSEPEQNNVYRSVGTSIAGRIGT 94 (201)
Q Consensus 45 ~~IK~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~~i~~~~~gs~~Gr~~~ 94 (201)
.+.++|+.. ..+|+.|++.|++.+..++.-...+.--.++.||+++
T Consensus 131 ~Lkr~Gv~H----~~AikkVlq~fY~~laVkkRVaaIQAEEAKLSGkfIT 176 (311)
T 6SGA_Cb 131 ELKRRGVDH----GEAIRKVLQGFYSGLAVKKRVAAIQAEEAKLTGRFIT 176 (311)
T ss_pred HHHHcCCCH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCcee
No 7
>PF04583.16 ; Baculo_p74 ; Baculoviridae p74 conserved region
Probab=31.38 E-value=6.4e+02 Score=23.36 Aligned_cols=82 Identities=9% Similarity=-0.057 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHH---HHHhhHHHHHHHHHHHHH---HHHHHHHHHhh-hhHHHHhcCCcChhHHHH
Q FD01845385_009 55 ENIVNAVKLIFQLFNKYLSEPEQNNV---YRSVGTSIAGRIGTNTII---SSIAKAVIEKI-SFTYIVFKGKINPITTLS 127 (201)
Q Consensus 55 ~~i~k~I~ii~~~F~~~l~~~~~~~i---~~~~~gs~~Gr~~~~~~~---~~ia~~i~~r~-~~~~~~~~g~~~~~~~~~ 127 (201)
+.+.+.++..+.+..+++.+.-.+.+ ..+++.++.|...=+.++ .+.+-..+.++ ..+.|+..+-.+.++.+.
T Consensus 22 d~~l~~~k~~lkki~~~lip~l~~~ll~~s~~v~~r~l~~~~k~~~~~~~~~~~ikt~s~~a~~lak~~~~a~SVvgiiL 101 (213)
T Q6JPC1_NPVNC/3 22 TVIDELYTRIMKKIITKTIPYIEKFLLSTSVVVTKRVLGYSIKAALFHQVNAYAVKIASTVAKAIARFSVQASSVIGVVL 101 (213)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q FD01845385_009 128 NLLLFGGMA 136 (201)
Q Consensus 128 ~il~iGg~~ 136 (201)
.++++-++.
T Consensus 102 iv~~I~Dli 110 (213)
T Q6JPC1_NPVNC/3 102 FFLTIVDII 110 (213)
T ss_pred HHHHHHHHH
No 8
>6YNX_P ATPTT10; mitochondria, ATP synthase, Fo-subcomplex, IF1 dimer, MEMBRANE PROTEIN; HET: UQ8, PO4, PEE, NAD, CDL, ATP, PC1; 2.5A {Tetrahymena thermophila}
Probab=30.95 E-value=76 Score=28.01 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=0.0 Template_Neff=2.200
Q ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCCcChhHHHH-HHHHHHHHHHHHHHHH------H
Q FD01845385_009 73 SEPEQNNVYRSVGTSIAGRIGTNTII-SSIAKAVIEKISFTYIVFKGKINPITTLS-NLLLFGGMAERSIRVS------D 144 (201)
Q Consensus 73 ~~~~~~~i~~~~~gs~~Gr~~~~~~~-~~ia~~i~~r~~~~~~~~~g~~~~~~~~~-~il~iGg~~eRsIy~S------r 144 (201)
+.+++..++.++....-|-.+++..+ -...++|-.-.+...-+.. ++++ .+++.|-.++-++|.| -
T Consensus 26 ~q~~i~~l~ngv~s~qN~a~~~s~~lSleavNRi~~~kkl~Iy~ra------aiV~~~~~~g~r~~~~s~y~~~~~~ei~ 99 (152)
T 6YNX_P 26 KQEQIQAIYDKVPQWTNGGRFLGFWLSMEAVNRVQSVAKLPIYYRA------GIVATSTLLGGLVSSLVFWKSGNENQVA 99 (152)
T ss_pred HHHHHHHHHhcCCcccchhhhhhhhHcHHhHHccchHhcCchhhhh------hHHhHHHHHHHHHHHhhHHhcCChhHHH
Q ss_pred HHHHHCHHHHHHHchhcCcHHhHHhHh
Q FD01845385_009 145 SLSNEAPEIYEVLRPRDYDLLYFLFAE 171 (201)
Q Consensus 145 ~L~~~nP~iY~~Lr~~dlDLLYFLvE~ 171 (201)
+|..-.|---++.--..||=+||.++|
T Consensus 100 klldGaPiwenkfDVPELdK~fFfiDD 126 (152)
T 6YNX_P 100 KLANGAPVYLKKWEVPELSKLYFFLDD 126 (152)
T ss_pred HHhcCCchhhcccCCchhhceeEEEcC
No 9
>2F5U_A Virion protein UL25; HSV-1, Capsid Protein, DNA packaging, UL25, Head Completion, VIRAL PROTEIN; 2.1A {Human herpesvirus 1}
Probab=30.06 E-value=36 Score=34.63 Aligned_cols=9 Identities=78% Similarity=1.553 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 428 dYD~LYFlv 436 (447)
T 2F5U_A 428 DYDMLYFLC 436 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 10
>7NXP_A Capsid vertex component 2; herpesvirus, capsid, HCMV, assembly, VIRAL PROTEIN; HET: GOL; 1.896A {Human cytomegalovirus}
Probab=28.41 E-value=38 Score=34.84 Aligned_cols=9 Identities=67% Similarity=1.243 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 446 dYD~LYFlv 454 (479)
T 7NXP_A 446 IYELLYFLV 454 (479)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 11
>6PPB_l Capsid vertex component 2; genome, portal, capsid, genome packaging, VIRUS, VIRAL PROTEIN;{Human herpesvirus 8}
Probab=26.83 E-value=43 Score=35.05 Aligned_cols=9 Identities=56% Similarity=1.165 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 530 dYD~LYFlv 538 (549)
T 6PPB_l 530 DYDRAYFMV 538 (549)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 12
>6VN1_A Envelope glycoprotein B; Varicella Zoster Virus, Glycoprotein B, Neutralization, Monoclonal Antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex;{Human alphaherpesvirus 3} SCOP: e.76.1.0
Probab=26.65 E-value=1.5e+03 Score=26.20 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred HhhccCHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHhcCC
Q FD01845385_009 48 RHDILNYENIVNAVKLIFQLFNKYLSEPEQN----NVYRSVGTSIAGRIGTNTII----SSIAKAVIEKISFTYIVFKGK 119 (201)
Q Consensus 48 K~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~----~i~~~~~gs~~Gr~~~~~~~----~~ia~~i~~r~~~~~~~~~g~ 119 (201)
..|+++.+.+-+=-+.--+.| ..++..-.+ .+.+.+..-+.|==.+.+.+ +-++.++.+-++-+..++.
T Consensus 708 ~snvfDlE~m~ReyN~y~qrl-~dl~~~i~~~~~~~~i~gl~~~~~gLG~vGk~vg~vv~~V~ga~~SiVsGviSFlk-- 784 (931)
T 6VN1_A 708 DTGLLDYSEIQRRNQMHSLRF-YDIDKVVQYDSGTAIMQGMAQFFQGLGTAGQAVGHVVLGATGALLSTVHGFTTFLS-- 784 (931)
T ss_dssp SCSSCCHHHHHHHHTTHHHHH-SCTTCCCC--------------------------------------------------
T ss_pred hcCCCCHHHHHHHHhHHHhhh-ccchhhhccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHchh
Q FD01845385_009 120 INPITTLSNLLLFGGMAERSIRVSDSLSNEAPEIYEVLRPR 160 (201)
Q Consensus 120 ~~~~~~~~~il~iGg~~eRsIy~Sr~L~~~nP~iY~~Lr~~ 160 (201)
||.+.+..+|++.|..-=.+-..|+-+.-...--..|-|.
T Consensus 785 -NPFGgl~iillvlaviv~vfl~~rr~~~~~~~P~k~lyP~ 824 (931)
T 6VN1_A 785 -NPFGALAVGLLVLAGLVAAFFAYRYVLKLKTSPMKALYPL 824 (931)
T ss_dssp -----------------------------------------
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHhccc
No 13
>6W2D_w Capsid vertex component 2; gamma-herpesvirus, EBV, CATC, Structural plasticity, VIRAL PROTEIN; 4.0A {Epstein-Barr virus (strain B95-8)}
Probab=26.47 E-value=43 Score=35.20 Aligned_cols=9 Identities=78% Similarity=1.316 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 551 dYD~LYFlv 559 (570)
T 6W2D_w 551 DYDRLYFLT 559 (570)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 14
>5ZZ8_s UL25; Herpes simplex virus 2, capsid, capsid-vertex-specific component, STRUCTURAL PROTEIN; 3.75A {Human herpesvirus 2}
Probab=26.24 E-value=44 Score=35.28 Aligned_cols=9 Identities=89% Similarity=1.597 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 566 dYD~LYFlv 574 (585)
T 5ZZ8_s 566 DYDLLYFLC 574 (585)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 15
>7ETJ_O Capsid vertex component 2; C5 portal vertex, partially-enveloped capsid, VIRAL PROTEIN; 4.0A {Human cytomegalovirus}
Probab=26.09 E-value=46 Score=35.52 Aligned_cols=9 Identities=67% Similarity=1.243 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 624 DYDlLYFlv 632 (642)
T 7ETJ_O 624 IYELLYFLV 632 (642)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 16
>PF03874.20 ; RNA_pol_Rpb4 ; RNA polymerase Rpb4
Probab=25.61 E-value=6.8e+02 Score=21.75 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred hHHHHHHcccC--C-CCcccchhHHHHHHHHHH------hhc--------cCHHHHHHHHH----------HHHHHHHHc
Q FD01845385_009 19 DYGYLIYGIFD--T-DTRYERETERIRIMTAIR------HDI--------LNYENIVNAVK----------LIFQLFNKY 71 (201)
Q Consensus 19 DlgYL~y~f~D--T-d~R~~n~~e~~Rl~~~IK------~gi--------~n~~~i~k~I~----------ii~~~F~~~ 71 (201)
.+-|-.++|+. . -.++.+...-..+.+.++ ... +.+..+..+++ .++.+...+
T Consensus 64 ~i~~~tl~Yl~~~~~f~~~~~~e~i~~l~~~L~~~~~~~~~~~~~~~~~~Lt~~E~lqIiNl~P~s~~El~~ii~~~e~r 143 (160)
T A0A0D1CVH2_UST 64 TIQYETISSLSQVTKPCAHQTAENIVAFLDELKARGYSIHDSEAKRGGLGLNRSERLQIVNHAPQSVVELHTLVEELEER 143 (160)
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHcCCCCCcchhhcCCCCCCHHHHHHHhhcCCCCHHHHHHHHHhHHhc
Q ss_pred CCHHHHHHHHHHh
Q FD01845385_009 72 LSEPEQNNVYRSV 84 (201)
Q Consensus 72 l~~~~~~~i~~~~ 84 (201)
+++++++.+..-+
T Consensus 144 ~~ee~le~IL~~i 156 (160)
T A0A0D1CVH2_UST 144 FHPHQIEELIALV 156 (160)
T ss_pred CCHHHHHHHHHHH
No 17
>PF01706.20 ; FliG_C ; FliG C-terminal domain
Probab=25.49 E-value=66 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHCHHHHHHHchh--cCcHHhHHhHhhcHHHHHHH
Q FD01845385_009 146 LSNEAPEIYEVLRPR--DYDLLYFLFAEAVKPFVDAI 180 (201)
Q Consensus 146 L~~~nP~iY~~Lr~~--dlDLLYFLvE~~v~PFvdAi 180 (201)
|++++|+++..++.. .+|=+..+=++.++-++..+
T Consensus 3 l~~~~p~~a~~i~~~~~~fedl~~l~~~~l~~~l~~~ 39 (108)
T W0RED5_9BACT/2 3 VSERDASLCEQIKNLMFVFEDLAGLDDKSLQRLLREI 39 (108)
T ss_pred hhhhCHHHHHHHHHHCCCHHHHhCCCHHHHHHHHHhC
No 18
>7FJ1_c DNA packaging tegument protein UL25; Pseudorabies virus, C-capsid, Cryo-EM, VIRUS; 4.43A {Suid alphaherpesvirus 1}
Probab=25.32 E-value=45 Score=34.86 Aligned_cols=9 Identities=89% Similarity=1.597 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred cCcHHhHHh
Q FD01845385_009 161 DYDLLYFLF 169 (201)
Q Consensus 161 dlDLLYFLv 169 (201)
|||++||||
T Consensus 516 dYD~LYFlv 524 (534)
T 7FJ1_c 516 DYDLLYFLC 524 (534)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 19
>PF18689.5 ; PriX ; Primase X
Probab=23.76 E-value=1.2e+02 Score=24.86 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHCHHHHHHHch
Q FD01845385_009 144 DSLSNEAPEIYEVLRP 159 (201)
Q Consensus 144 r~L~~~nP~iY~~Lr~ 159 (201)
..|+++|||+|..+..
T Consensus 78 ~klk~~~~eLY~~i~~ 93 (95)
T F4B8W4_ACIHW/4 78 KKLQEKDPELYEEIRR 93 (95)
T ss_pred HHHHHHCHHHHHHHHH
No 20
>PF10689.13 ; DUF2496 ; Protein of unknown function (DUF2496)
Probab=22.96 E-value=3.4e+02 Score=19.26 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHc
Q FD01845385_009 43 IMTAIRHDILNYENIVNAVKLIFQLFNKY 71 (201)
Q Consensus 43 l~~~IK~gi~n~~~i~k~I~ii~~~F~~~ 71 (201)
|++++..-....+.+-++.++|..+|.++
T Consensus 15 LI~lLE~n~i~~~~vl~Al~iV~~D~~~K 43 (43)
T Q6D803_PECAS/2 15 LIMLLEENQIEPRIALAALAMVQADFEKK 43 (43)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhhC
No 21
>5IR0_B Uncharacterized protein ORF19; Vibrio cholerae, alpha/beta protein, unknown function, structure genomics, Center for Structural Genomics of Infectious Diseases, CSGID; HET: MSE, CIT; 3.297A {Vibrio cholerae O1 biovar El Tor}
Probab=22.01 E-value=1.4e+02 Score=26.14 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CcHHhHHhHhhcHHHHHHHHHchhcChHHHHHHHHHHhcC
Q FD01845385_009 162 YDLLYFLFAEAVKPFVDAIHTGYTEGRPVFDRIMKRVEER 201 (201)
Q Consensus 162 lDLLYFLvE~~v~PFvdAi~v~~~~g~~~F~~I~~~v~~~ 201 (201)
+||+.|++|....+|..+-..-+.- .+.++++++-+.+.
T Consensus 110 ~dl~~~~le~Nf~~FF~~s~l~~~~-~~~l~~~~~~~~~~ 148 (161)
T 5IR0_B 110 MDLFVWLVDENLVTLFKGSKQLQSL-KPKFDEFYKKFEDF 148 (161)
T ss_dssp HHHHHHHHHHHTHHHHTTCC--------------------
T ss_pred HHHHHHHHHHHcHhHHccCHHHHhh-HHHHHHHHHHHHHH
No 22
>PF06207.15 ; DUF1002 ; Protein of unknown function (DUF1002)
Probab=20.34 E-value=2.8e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q FD01845385_009 45 TAIRHDILNYENIVNAVKLIFQLFNKYLSEPEQNNVYR 82 (201)
Q Consensus 45 ~~IK~gi~n~~~i~k~I~ii~~~F~~~l~~~~~~~i~~ 82 (201)
++.+.+..+.+.|+++|.-+.+++.=.+++++++.|.+
T Consensus 162 ~i~~~~~~t~~~I~~iV~~~~~~~~I~Lsd~q~~~Lv~ 199 (221)
T D5X9T2_THEPJ/3 162 RVIADKVTDPEQIKQIIINVAGDLNINLTPAQIDQITQ 199 (221)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH