Query FD01843864_04875 hypothetical protein
Match_columns 106
No_of_seqs 41 out of 44
Neff 3.49153
Searched_HMMs 86581
Date Wed Feb 28 00:07:04 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7576932.hhr -oa3m ../results/7576932.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05766.16 ; NinG ; Bacterioph 95.6 0.023 2.7E-07 42.1 3.1 62 37-106 95-157 (197)
2 PF05315.15 ; ICEA ; ICEA Prote 93.0 0.084 9.7E-07 41.9 1.2 55 28-86 81-143 (218)
3 1E7L_A RECOMBINATION ENDONUCLE 86.9 1.4 1.6E-05 33.6 3.1 60 28-99 8-74 (157)
4 PF09665.14 ; RE_Alw26IDE ; Typ 73.2 4.5 5.2E-05 36.9 2.0 54 28-94 231-292 (511)
5 PF03392.17 ; OS-D ; Insect phe 72.0 8.8 0.0001 25.3 2.7 29 77-105 46-74 (93)
6 1N8V_B chemosensory protein; L 68.1 11 0.00013 26.2 2.7 29 77-105 49-77 (112)
7 2GVS_A chemosensory protein CS 66.6 11 0.00013 26.3 2.4 29 77-105 51-79 (109)
8 8H2H_D Group II intron-encoded 55.2 9.2 0.00011 32.3 0.5 48 36-86 539-590 (599)
9 PF16786.9 ; RecA_dep_nuc ; Rec 52.3 25 0.00029 24.9 2.2 56 27-86 1-60 (109)
10 5H0M_A HNH endonuclease; Therm 52.1 16 0.00019 23.9 1.2 53 36-96 72-127 (130)
11 PF07102.16 ; YbcO ; Putative n 49.0 26 0.0003 24.1 1.9 54 32-92 4-62 (92)
12 8FLI_B Maturase reverse transc 48.1 14 0.00017 30.3 0.6 60 36-105 499-562 (562)
13 7EVP_C Sliding clamp inhibitor 46.7 20 0.00023 25.8 1.1 13 61-73 13-25 (74)
14 6DLC_B Designed protein DHD1:2 36.0 44 0.00051 21.2 1.2 10 54-63 1-10 (36)
15 PF06147.15 ; DUF968 ; Protein 32.1 1.2E+02 0.0014 23.4 3.2 81 10-100 69-152 (171)
16 7AOI_Ae mL41; mitochondria, tr 29.9 34 0.00039 26.7 0.1 54 13-74 55-108 (116)
17 3G27_A 82 prophage-derived unc 29.6 1.2E+02 0.0013 21.1 2.6 29 28-56 1-34 (96)
18 PF07295.15 ; DUF1451 ; Zinc-ri 29.5 39 0.00045 25.0 0.3 25 40-89 117-141 (147)
19 PF09986.13 ; DUF2225 ; Unchara 26.9 21 0.00024 24.4 -1.4 47 40-86 8-54 (213)
20 PF04423.18 ; Rad50_zn_hook ; R 26.8 46 0.00053 19.0 0.3 10 80-89 21-30 (54)
21 3GOX_A Restriction endonucleas 26.0 61 0.00071 25.4 0.9 39 36-91 136-179 (200)
22 3M7K_A restriction endonucleas 25.6 56 0.00065 22.2 0.5 43 36-91 59-117 (142)
23 7QEP_D6 40S ribosomal protein 24.2 17 0.00019 26.5 -2.3 82 20-103 1-90 (105)
24 PF14353.10 ; CpXC ; CpXC prote 23.9 56 0.00064 23.2 0.3 37 40-86 2-42 (127)
25 6YXY_Ae mL41; mitoribosome, as 23.7 56 0.00064 27.6 0.3 54 13-74 101-154 (197)
26 3JBN_3 40S ribosomal protein e 22.3 17 0.00019 25.8 -2.5 82 20-103 3-92 (95)
27 PF16784.9 ; HNHc_6 ; Putative 21.0 1.1E+02 0.0013 23.8 1.4 58 35-100 121-179 (198)
28 3MWM_A Putative metal uptake r 20.9 23 0.00027 24.3 -2.0 50 40-92 90-139 (139)
29 PF00265.22 ; TK ; Thymidine ki 20.5 57 0.00066 22.1 -0.2 36 40-86 135-170 (171)
30 8FMW_R 30S ribosomal protein S 20.1 1.9E+02 0.0022 18.2 2.1 22 39-63 1-22 (63)
No 1
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=95.63 E-value=0.023 Score=42.07 Aligned_cols=62 Identities=18% Similarity=0.427 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCCCcccCC-CCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhHHHhHHHHHHHHHhC
Q FD01843864_048 37 GKPCVICGK-DTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGGRMSAFSKKMRQILS 106 (106)
Q Consensus 37 GkpCv~CG~-~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg~ls~~sk~mk~~~g 106 (106)
+..|+.||. ....+.+||+.|. ..+...--+.+.+.++|..|-...+|....|...|...+|
T Consensus 95 ~~~C~~Cg~~~~~~~~~~Hi~~~--------~~~~~~~~~~~N~~~lC~~Ch~~~~~~~~~~~~~l~~~~g 157 (197)
T A0A2U2GVX8_YER 95 GDACVSCGRFHEGQYHAGHYLTV--------GANPELRFNEDNCHRQCAPCNNHLSGNIEKYTPNLIAKIG 157 (197)
T ss_pred CCCCCCCCCccCCcceeccccCc--------CCChhhcCChhhcHHhCHHHHhhccCCHHhhHHHHHHHHC
No 2
>PF05315.15 ; ICEA ; ICEA Protein
Probab=93.04 E-value=0.084 Score=41.91 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CHHHHHHh----CCCCCcccCCCCC----CcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 28 TTAQTRAV----QGKPCVICGKDTG----KMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 28 t~aQr~~V----qGkpCv~CG~~~~----~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
+...|+.| .++-|+.||.... ....||+.|+ +..|..+.......+-.|+-|..|
T Consensus 81 s~~~r~~I~~~~~~~cc~~CG~~~~~~~~~L~iDHkiP~----~~~g~~~~~~~~~~~nfQ~LC~~C 143 (218)
T J9R1X7_RIEAN/2 81 NQSIRKEIKDFYKNKNCVMLGINGNSINTKIEIDHKDGR----KDNDRVSNIKTQRLEDFQPLSKAA 143 (218)
T ss_pred CHHHHHHHHHHhCCceEEEecCCCCcCCceEEEeecCCC----ccCCCccccccCCHHHhHHHhHHH
No 3
>1E7L_A RECOMBINATION ENDONUCLEASE VII; ENDONUCLEASE, RESOLVASE, HOLLIDAY JUNCTION, DNASE; HET: SO4; 1.32A {BACTERIOPHAGE T4} SCOP: a.140.4.1, d.4.1.5
Probab=86.91 E-value=1.4 Score=33.60 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CHHHHHHh---CCCCCcccCCCCC----CcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhHHHhHHHH
Q FD01843864_048 28 TTAQTRAV---QGKPCVICGKDTG----KMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGGRMSAFSK 99 (106)
Q Consensus 28 t~aQr~~V---qGkpCv~CG~~~~----~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg~ls~~sk 99 (106)
+.++++.. |+.-|.-||.... .++-||.-||..- .+|.+--.- |+.|-..-|-....|.|
T Consensus 8 ~~~~r~~l~~~Q~g~C~iCg~~~~~~~~~~~lDHdHpl~~g--~tG~vRgvL----------C~~CN~~~G~~~~~~~r 74 (157)
T 1E7L_A 8 YKEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGP--KAGKVRGLL----------CNLCDAAEGQMKHKFNR 74 (157)
T ss_dssp HHHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCSST--TTTBEEEEE----------CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCccccCceeceeccccCC--CCCcccccc----------CHHHHhcHHHhHHHHHH
No 4
>PF09665.14 ; RE_Alw26IDE ; Type II restriction endonuclease (RE_Alw26IDE)
Probab=73.17 E-value=4.5 Score=36.94 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred CHHHHHHh--------CCCCCcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhHHH
Q FD01843864_048 28 TTAQTRAV--------QGKPCVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGGRM 94 (106)
Q Consensus 28 t~aQr~~V--------qGkpCv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg~l 94 (106)
+.+++... ++..|..||. ....+||+.|+.. |..+ ...- ++-|..|.+..+.++
T Consensus 231 ~~a~~~~~~~~~~~~~~~~~C~~CG~--~~l~vDHIiPis~-----GG~~-----~~~N-~~lC~~CNs~K~nr~ 292 (511)
T Q1ATV9_RUBXD/1 231 VAADRLMGIIRSDDELKREPCLNGHP--GPCSADHIGPISL-----GFAH-----RPEF-QFLCKACNSGKNNRM 292 (511)
T ss_pred cHHHHHHhhhcCCchHHCCCCCCCCC--CCceeccccchhh-----CCCC-----Cchh-HHccHHHHHhccccC
No 5
>PF03392.17 ; OS-D ; Insect pheromone-binding family, A10/OS-D
Probab=72.04 E-value=8.8 Score=25.33 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hhcCCCCccccHHHhHHHhHHHHHHHHHh
Q FD01843864_048 77 DAVQPHCQEHSRSQGGRMSAFSKKMRQIL 105 (106)
Q Consensus 77 ~aVQp~C~tCS~~QGg~ls~~sk~mk~~~ 105 (106)
++++..|..|+..|--.+..+...|+...
T Consensus 46 ~~l~~~C~~Ct~~qk~~~~~~~~~l~~~~ 74 (93)
T T1HSW4_RHOPR/2 46 EALETECAKCTDAQKRFAGKVMSFLLLNK 74 (93)
T ss_pred HHHHhCccCCCHHHHHHHHHHHHHHHHhC
No 6
>1N8V_B chemosensory protein; LIPID BINDING PROTEIN; HET: BDD; 1.39A {Mamestra brassicae} SCOP: a.118.21.1
Probab=68.12 E-value=11 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred hhcCCCCccccHHHhHHHhHHHHHHHHHh
Q FD01843864_048 77 DAVQPHCQEHSRSQGGRMSAFSKKMRQIL 105 (106)
Q Consensus 77 ~aVQp~C~tCS~~QGg~ls~~sk~mk~~~ 105 (106)
++++..|..|+..|--.+..+...|+...
T Consensus 49 e~l~~~C~~Ct~~qk~~~~~~~~~l~~~~ 77 (112)
T 1N8V_B 49 DAIENGCKKCTENQEKGAYRVIEHLIKNE 77 (112)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHC
No 7
>2GVS_A chemosensory protein CSP-sg4; alpha-coil, LIPID BINDING PROTEIN; NMR {Schistocerca gregaria} SCOP: a.118.21.0
Probab=66.58 E-value=11 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred hhcCCCCccccHHHhHHHhHHHHHHHHHh
Q FD01843864_048 77 DAVQPHCQEHSRSQGGRMSAFSKKMRQIL 105 (106)
Q Consensus 77 ~aVQp~C~tCS~~QGg~ls~~sk~mk~~~ 105 (106)
++++..|..|+..|--.+..+...|++..
T Consensus 51 ~~l~~~C~~Ct~~qk~~~~~~~~~l~~~~ 79 (109)
T 2GVS_A 51 DALSNECAKCNEKQKEGTKKVLKHLINHK 79 (109)
T ss_dssp HHHHSTTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHC
No 8
>8H2H_D Group II intron-encoded protein LtrA; intron, RNA BINDING PROTEIN-RNA COMPLEX; 3.2A {Lactococcus lactis}
Probab=55.18 E-value=9.2 Score=32.32 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCCCcccCCCCCC--cccCCCChhhHHHHhcCCCcHHhc--cchhhcCCCCccc
Q FD01843864_048 36 QGKPCVICGKDTGK--MVADHKDALVVEYYRTGQNDIAKQ--TSVDAVQPHCQEH 86 (106)
Q Consensus 36 qGkpCv~CG~~~~~--~vADHk~pLVvE~Y~tG~iD~~km--rs~~aVQp~C~tC 86 (106)
++..|..||..... .-.+|+.|+..- .|..+...+ ....-..+-|+.|
T Consensus 539 ~~~~C~~Cg~~~~~~~~~~hHi~~~~~~---~~~~~~~~~~~~~~~~~~~lc~~C 590 (599)
T 8H2H_D 539 KAKCCELCGTSDENTSYEIHHVNKVKNL---KGKEKWEMAMIAKQRKTLVVCFHC 590 (599)
T ss_dssp TTTCCTTTCCCCSSSCCCCEECSCSTTC---CSSSSSTTTHHHHTCSEECCCTTT
T ss_pred hhcccccCCCCCCCCcceEEehhhhhcc---cCcchHHHHHHHHhCCceeeCHHH
No 9
>PF16786.9 ; RecA_dep_nuc ; Recombination enhancement, RecA-dependent nuclease
Probab=52.35 E-value=25 Score=24.92 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCHHHHHHh---CCCCCcccCCC-CCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 27 PTTAQTRAV---QGKPCVICGKD-TGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 27 tt~aQr~~V---qGkpCv~CG~~-~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
||.++++.. ...||+.||.. .......|..-....|...| ..-++-..+-|-|+.|
T Consensus 1 ~t~~e~~~l~~v~~~~C~~C~~~~g~~~~~~~~~~~~~hH~~~~----g~k~~~~~~ipLC~~h 60 (109)
T H8L2H7_FRAAD/1 1 ATAVQRDRIVMVKELGCICCQMNRAAGRPTAFFGVAEAHHLLSG----GRRRGHEYTIGLCPWH 60 (109)
T ss_pred CCHHHHHHHHHHHhcCCCcCCccccCCCCCcccCceehhhHHcC----CCCCCcccEEeCCHHH
No 10
>5H0M_A HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2}
Probab=52.11 E-value=16 Score=23.85 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCCCCcccCCCC---CCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhHHHhH
Q FD01843864_048 36 QGKPCVICGKDT---GKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGGRMSA 96 (106)
Q Consensus 36 qGkpCv~CG~~~---~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg~ls~ 96 (106)
.+.-|..||... .....||+.|+-. +.......+.+++-|..|....+.....
T Consensus 72 ~~~~C~~c~~~~~~~~~~~~~Hi~~~~~--------~~~~~~~~~nl~~lc~~ch~~~~~~~~~ 127 (130)
T 5H0M_A 72 DNYLCQHCLKEKKITRAVIVDHITPLLV--------DWSKRLDMDNLQSLCQACHNRKTAEDKR 127 (130)
T ss_dssp TTTBCHHHHHTTCCCBCCEEEESSCTTT--------CGGGTTCGGGEEEECHHHHHHHHHHHHH
T ss_pred cCCCchhhchhcCCCceEEeeeeeeccc--------CHHHcCChhHHHhhcHHHHHHHhHHHHh
No 11
>PF07102.16 ; YbcO ; Putative nuclease YbcO
Probab=48.96 E-value=26 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHhCCCCCcc-----cCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhH
Q FD01843864_048 32 TRAVQGKPCVI-----CGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGG 92 (106)
Q Consensus 32 r~~VqGkpCv~-----CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg 92 (106)
++.|.+.||+. ||.....-++-|.... +.-....-.+-..+-|-|+.|-..+-+
T Consensus 4 ~~~v~~~pC~~~~~~~C~~~~~~~~~~H~~~~-------~~~G~g~K~~D~~~~~lC~~cH~~~~~ 62 (92)
T YBCO_ECOLI/2-9 4 RKAARGRECQVRIPGVCNGNPETSVLAHIRLT-------GLCGTGTKPPDLIATIACSACHDEIDR 62 (92)
T ss_pred HHHHhCCCCEEecCCCCCCCCCCcccceeccc-------CCCCCCCCCCcceeeecCHHHHHHHhC
No 12
>8FLI_B Maturase reverse transcriptase; group II intron, splicing, branching, maturase, SPLICING-RNA complex;{Thermosynechococcus vestitus}
Probab=48.13 E-value=14 Score=30.25 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCCCCcccCCCCC---CcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHh-HHHhHHHHHHHHHh
Q FD01843864_048 36 QGKPCVICGKDTG---KMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQG-GRMSAFSKKMRQIL 105 (106)
Q Consensus 36 qGkpCv~CG~~~~---~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QG-g~ls~~sk~mk~~~ 105 (106)
++..|..||.... ....||+.|+ ..|..| .....++.|+.|..... +....+...|++.+
T Consensus 499 ~~~~C~~C~~~~~~~~~~~~hhi~~~-----~~~~~~-----~~~n~~~lc~~ch~~~~~~~~~~~~~~~~~~~ 562 (562)
T 8FLI_B 499 QGGICPVCGGEIEQDMLTEIHHILPK-----HKGGSD-----DLDNLVLIHANCHKQVHSRDGQHSRFLLKEGL 562 (562)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cCCCCCcCCCccCccCcEEEEeceec-----ccCCCC-----chhheeEeCHHHHHHHcccCCccchhhHhccC
No 13
>7EVP_C Sliding clamp inhibitor; gp168, DNA beta-clamp, cross-species inhibitor, ANTIMICROBIAL PROTEIN;{Staphylococcus aureus}
Probab=46.71 E-value=20 Score=25.78 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=0.0 Template_Neff=1.300
Q ss_pred HHHhcCCCcHHhc
Q FD01843864_048 61 EYYRTGQNDIAKQ 73 (106)
Q Consensus 61 E~Y~tG~iD~~km 73 (106)
+||+.|.+|..+|
T Consensus 13 ~YYr~GH~~~~~M 25 (74)
T 7EVP_C 13 SYYRGGHKDLESM 25 (74)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHH
No 14
>6DLC_B Designed protein DHD1:234_B; Computational Design, Heterodimer, Coiled-coil, DE NOVO PROTEIN; 3.261A {synthetic construct}
Probab=36.01 E-value=44 Score=21.20 Aligned_cols=10 Identities=60% Similarity=0.803 Sum_probs=0.0 Template_Neff=1.100
Q ss_pred CCChhhHHHH
Q FD01843864_048 54 HKDALVVEYY 63 (106)
Q Consensus 54 Hk~pLVvE~Y 63 (106)
|++|-|+|-|
T Consensus 1 h~dpkvvety 10 (36)
T 6DLC_B 1 HGDPKVVETY 10 (36)
T ss_dssp -CCHHHHHHH
T ss_pred CCChHHHHHH
No 15
>PF06147.15 ; DUF968 ; Protein of unknown function (DUF968)
Probab=32.12 E-value=1.2e+02 Score=23.39 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCCCCCCCCCCCCCCCCCC--HHHHHHhCCCCCcccCCCCCCcc-cCCCChhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 10 FTPKSGIPPYSRPGAAGPT--TAQTRAVQGKPCVICGKDTGKMV-ADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 10 ~~~~~~i~pYkRP~~~att--~aQr~~VqGkpCv~CG~~~~~~v-ADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
..+.++..-..||+. .+- .+-.+.|...||+.||... .. +-|+ ...|......-.+...+-|-|+.|
T Consensus 69 vd~~~p~~~m~~pK~-~~~~~~~~~~~v~~~~C~~Cg~~~--~~~~HHi-------~~~g~~G~g~k~~d~~~ipLC~~c 138 (171)
T R9TRM9_9CAUD/1 69 VDDEPPAMFMARPKE-LTWQSEKYLKFVRSLPCVVTGNTE--GVVAHHL-------ILHGEGKLSGKAHDLFTFPLTAEE 138 (171)
T ss_pred ecCCCchhcccCCCC-CcHHCHHHHhhhccCcceeCCCCC--ceeeeEE-------EccCCCcCCCCccccceeeCCHHH
Q ss_pred cHHHhHHHhHHHHH
Q FD01843864_048 87 SRSQGGRMSAFSKK 100 (106)
Q Consensus 87 S~~QGg~ls~~sk~ 100 (106)
-...-+....|-+.
T Consensus 139 H~~~h~~~~~~e~~ 152 (171)
T R9TRM9_9CAUD/1 139 HRKFHDDPKGWEAK 152 (171)
T ss_pred HHHHhcCHHHHHHH
No 16
>7AOI_Ae mL41; mitochondria, translation, trypanosoma, assembly, evolution, ribosome, large subunit; HET: NAD, 4HH, GTP, ADP; 3.5A {Trypanosoma brucei}
Probab=29.93 E-value=34 Score=26.69 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHhCCCCCcccCCCCCCcccCCCChhhHHHHhcCCCcHHhcc
Q FD01843864_048 13 KSGIPPYSRPGAAGPTTAQTRAVQGKPCVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQT 74 (106)
Q Consensus 13 ~~~i~pYkRP~~~att~aQr~~VqGkpCv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmr 74 (106)
++..+-|-|... -|.+.---...|.||-.-|+. |.++.|+--|.-+.+|..++|
T Consensus 55 kSG~kLyfrGGK-pPnPs~hPylTGePcpvygw~-------vtd~~viR~F~~p~~~k~k~r 108 (116)
T 7AOI_Ae 55 KSGVKLYFRGGK-PPNPSVHPYLTGEPCPLYGWK-------VTDESVIRQFNMPSIDGTNFR 108 (116)
T ss_pred ccCCeeEEcCCC-CCCCCCCCccCCCcCCcccce-------eCCHHHHHhCCCCCCCCCCce
No 17
>3G27_A 82 prophage-derived uncharacterized protein ybcO; E.coli, prophage-associated, Zinc-binding, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, PROTEIN; 2.1A {Escherichia coli K-12}
Probab=29.63 E-value=1.2e+02 Score=21.07 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CHHHHHHhCCCCCc-----ccCCCCCCcccCCCC
Q FD01843864_048 28 TTAQTRAVQGKPCV-----ICGKDTGKMVADHKD 56 (106)
Q Consensus 28 t~aQr~~VqGkpCv-----~CG~~~~~~vADHk~ 56 (106)
..+-++.|.+.||+ .|+......++=|..
T Consensus 1 ~~~~~~~v~~~pC~~~~~g~C~~~~~~~~~~H~~ 34 (96)
T 3G27_A 1 MADLRKAARGRECQVRIPGVCNGNPETSVLAHIR 34 (96)
T ss_dssp ----CCTTTTSCCSCCCTTTCCCCGGGCEEEECC
T ss_pred CHHHHHHHhCCCCEeecCCCCCCCCCCcccceec
No 18
>PF07295.15 ; DUF1451 ; Zinc-ribbon containing domain
Probab=29.48 E-value=39 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHH
Q FD01843864_048 40 CVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRS 89 (106)
Q Consensus 40 Cv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~ 89 (106)
|..||........+++ |.||.|.+.
T Consensus 117 C~~Cg~~~~~~~~~~l-------------------------~~Cp~Cg~~ 141 (147)
T K0C2Z3_CYCSP/2 117 CTQCKQTLNFKKTGHI-------------------------PPCPTCHKT 141 (147)
T ss_pred eCCCCCEEEEeeCCCC-------------------------CCCCCCCCc
No 19
>PF09986.13 ; DUF2225 ; Uncharacterized protein conserved in bacteria (DUF2225)
Probab=26.88 E-value=21 Score=24.36 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 40 CVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 40 Cv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
|-.||......+..=....+...+..|..-...+--..---..||.|
T Consensus 8 CP~Cg~~~~~~~~~s~~~~~~~~~~d~~~~~~~~~~~~~~i~~Cp~C 54 (213)
T A8MEY1_ALKOO/5 8 CPVCRHRFTTKKIRTRGLRIERREEDFNVIFKDINPNYYYIWVCPTC 54 (213)
T ss_pred CCCCCCeeeeeeeccCCceeeEEecccCcccCCCCCCCceEEECCCC
No 20
>PF04423.18 ; Rad50_zn_hook ; Rad50 zinc hook motif
Probab=26.84 E-value=46 Score=18.99 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCCccccHH
Q FD01843864_048 80 QPHCQEHSRS 89 (106)
Q Consensus 80 Qp~C~tCS~~ 89 (106)
.+.||+|...
T Consensus 21 ~~~CP~C~~~ 30 (54)
T RAD50_AERPE/44 21 SARCPVCGAE 30 (54)
T ss_pred CCCCCCCCCC
No 21
>3GOX_A Restriction endonuclease Hpy99I; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY99I, PSEUDOPALINDROME, HYDROLASE-DNA COMPLEX; HET: 1PE; 1.5A {Helicobacter pylori}
Probab=26.03 E-value=61 Score=25.44 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCCCcccCCCC-----CCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHh
Q FD01843864_048 36 QGKPCVICGKDT-----GKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQG 91 (106)
Q Consensus 36 qGkpCv~CG~~~-----~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QG 91 (106)
|+..|..||... ...+.||. ..+|.+ ..+-|..|-..-|
T Consensus 136 q~~~C~iCg~~~~~~~~~~l~vDHd-------H~tg~v----------Rg~lC~~CN~~lG 179 (200)
T 3GOX_A 136 SVFTCPICEKRSIVGVTANLVHDHN-------HDTGWG----------REWICDSCNTGLG 179 (200)
T ss_dssp CEEECTTTCCEEEBTTTBCEEEEEC-------TTTCCE----------EEEEEHHHHHHHH
T ss_pred CCCCCCCCCCcccCCCCcceEEEEe-------cCCCCe----------eeEcCHHHHHHhh
No 22
>3M7K_A restriction endonuclease PacI; HNH restriction endonuclease, beta-beta-alpha-metal active site, 8 base-pair rare cutter, HYDROLASE-DNA complex; HET: SO4; 1.92A {Pseudomonas alcaligenes}
Probab=25.58 E-value=56 Score=22.19 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCCCcccCCCCCC----------------cccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHh
Q FD01843864_048 36 QGKPCVICGKDTGK----------------MVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQG 91 (106)
Q Consensus 36 qGkpCv~CG~~~~~----------------~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QG 91 (106)
|+..|.-||..... .-.||++| ..| -+..-+++-|..|....+
T Consensus 59 ~~~~C~~cg~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~-------~~~~N~~~~c~~cN~~k~ 117 (142)
T 3M7K_A 59 AQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDS------FEG-------YSPQNARLACFICNRIKS 117 (142)
T ss_dssp GGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEESST------TSC-------BCTTTEEEECHHHHHHHT
T ss_pred cCCCCCcCCCcccccchhhhcCCCCCccccceeeeeCC------CCC-------CCCcceehhhHHHHHHcC
No 23
>7QEP_D6 40S ribosomal protein S26; genome decay, microbial parasite, genome reduction, Encephalitozoon cuniculi, lose-to-gain, RIBOSOME; HET: SPD, AMP;{Encephalitozoon cuniculi GB-M1}
Probab=24.18 E-value=17 Score=26.55 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CCCCCCCCCHHHHHHhCCCCCcccCCCCCCcccCCC--------ChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHh
Q FD01843864_048 20 SRPGAAGPTTAQTRAVQGKPCVICGKDTGKMVADHK--------DALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQG 91 (106)
Q Consensus 20 kRP~~~att~aQr~~VqGkpCv~CG~~~~~~vADHk--------~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QG 91 (106)
+|-++ +-+..-|-.++--.|..||...++.=|=-+ ..++.|.-+.+.+|.-..-.+-.-.-.|.+| +...
T Consensus 1 krrn~-gr~k~~rG~~~~v~C~~Cgr~vPkdKAik~~~~~~ive~~~~rdi~~a~~~~~~~lpk~~~k~~yCvSC-Aih~ 78 (105)
T 7QEP_D6 1 MRRNH-GRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSC-ACHA 78 (105)
T ss_pred CcccC-CCCCCCCCCCCceecCCCcccCCCCCCceEEEecccccHHHHHHHHHccccccccccCceeEEEEeccc-ceec
Q ss_pred HHHhHHHHHHHH
Q FD01843864_048 92 GRMSAFSKKMRQ 103 (106)
Q Consensus 92 g~ls~~sk~mk~ 103 (106)
|-+...|++-++
T Consensus 79 ~ivr~rs~e~rk 90 (105)
T 7QEP_D6 79 KIVRVRSSQARK 90 (105)
T ss_pred ceeecCChhhcc
No 24
>PF14353.10 ; CpXC ; CpXC protein
Probab=23.87 E-value=56 Score=23.24 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CcccCCCCCCcccCCCC----hhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 40 CVICGKDTGKMVADHKD----ALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 40 Cv~CG~~~~~~vADHk~----pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
|-.||......+.+.++ |-..|-...| +.-.-.||.|
T Consensus 2 CP~Cg~~~~~~~~~~i~~~~~p~~~~~ll~g----------~~~~~~Cp~C 42 (127)
T H6LIR0_ACEWD/1 2 CPECGAYFNVEAYEMVNATLDQAIREEVIFG----------RIFDFTCPVC 42 (127)
T ss_pred CCCCCCEEEEEEEeeeecCCCHHHHHHHHcC----------CceEEECCCC
No 25
>6YXY_Ae mL41; mitoribosome, assembly, LSU, RIBOSOME; HET: ATP, SPD, MG, PM8, NAD, GTP; 3.1A {Trypanosoma brucei brucei}
Probab=23.69 E-value=56 Score=27.65 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=0.0 Template_Neff=2.200
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHhCCCCCcccCCCCCCcccCCCChhhHHHHhcCCCcHHhcc
Q FD01843864_048 13 KSGIPPYSRPGAAGPTTAQTRAVQGKPCVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQT 74 (106)
Q Consensus 13 ~~~i~pYkRP~~~att~aQr~~VqGkpCv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmr 74 (106)
+++.+-|-|... -|.+.---...|.||-.-|+. +.|+.|+--|.-+..|+.++|
T Consensus 101 kSG~KLyfrGGK-pPnPs~hPylTGePcpvygw~-------vTD~~VIR~Fn~p~~~k~k~r 154 (197)
T 6YXY_Ae 101 KSGVKLYFRGGK-PPNPSVHPYLTGEPCPLYGWK-------VTDESVIRQFNMPSIDGTNFR 154 (197)
T ss_pred cCCCeeEecCCC-CCCCCCCCccCCCcCCcccce-------eCCHHHHHhcCCCCCCCCCce
No 26
>3JBN_3 40S ribosomal protein eS26; RIBOSOME; 4.7A {Plasmodium falciparum 3D7}
Probab=22.33 E-value=17 Score=25.81 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CCCCCCCCCHHHHHHhCCCCCcccCCCCCCcccCCC--------ChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHh
Q FD01843864_048 20 SRPGAAGPTTAQTRAVQGKPCVICGKDTGKMVADHK--------DALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQG 91 (106)
Q Consensus 20 kRP~~~att~aQr~~VqGkpCv~CG~~~~~~vADHk--------~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QG 91 (106)
+|-++ +-...-|-.++--.|..||...++.=|=-+ ..++.|..+.+-+|.-..-.+....--|++| +...
T Consensus 3 kr~n~-g~~~~~rG~~~~v~C~~Cgr~vPkdKAik~~~~~~~ve~~~~~di~~a~~~~~~~lpk~~~k~~yCvSC-Aih~ 80 (95)
T 3JBN_3 3 KRRNG-GRSKHNRGHVNPLRCSNCGRCVPKDKAIKRFNIRNIVDTSAQRDIKEASVYSTFQLPKLYIKQCYCVSC-AIHS 80 (95)
T ss_dssp CCTTC-SSCCSSCSCCCEEECSSSCCEEETTTSEEECCEEESSCHHHHHHHHHHBSCSSCCCCEEECCEEECHHH-HHHT
T ss_pred ccccC-CCCCCCCCCCCceecCCcccccCcCCCeeEeeeeeccchHHHHHHHhhhhcCcccCCCceEEEEEeccc-cccc
Q ss_pred HHHhHHHHHHHH
Q FD01843864_048 92 GRMSAFSKKMRQ 103 (106)
Q Consensus 92 g~ls~~sk~mk~ 103 (106)
|.+...|++.++
T Consensus 81 ~iv~~rs~~~rk 92 (95)
T 3JBN_3 81 RFVRVRSREQRR 92 (95)
T ss_dssp TCCCCCCTTGGG
T ss_pred ccccCCChhHhc
No 27
>PF16784.9 ; HNHc_6 ; Putative HNHc nuclease
Probab=20.99 E-value=1.1e+02 Score=23.78 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred hCCCCCcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhH-HHhHHHHH
Q FD01843864_048 35 VQGKPCVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGG-RMSAFSKK 100 (106)
Q Consensus 35 VqGkpCv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg-~ls~~sk~ 100 (106)
+...+|+.||. .....|+.+ ...|.+-....-.-..+-|-|+.|-...-. -...|-+.
T Consensus 121 l~~~~C~~Cg~---~~~~hH~~~-----~g~g~~r~~~~~~~~~~i~LC~~hH~~~H~~g~~~f~~~ 179 (198)
T Q03RB7_LEVBA/2 121 IKYHRCMICNQ---PADIAHVHA-----VGIGRDRNHISHIGNYVMALCRRHHQEQHRVGIKSFMKE 179 (198)
T ss_pred HhhcceeecCC---Cceeeceec-----cccCCCCCccccCCCeEEEeCHHHHHHHHHhcHHHHHHH
No 28
>3MWM_A Putative metal uptake regulation protein; Fur, Zur, regulatory metal, graded transcription regulation, TRANSCRIPTION; 2.4A {Streptomyces coelicolor} SCOP: a.4.5.0
Probab=20.85 E-value=23 Score=24.26 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccccHHHhH
Q FD01843864_048 40 CVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEHSRSQGG 92 (106)
Q Consensus 40 Cv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tCS~~QGg 92 (106)
|..||.. ..+.|..-....+.... ..+.......-.+...|+.|+.+++|
T Consensus 90 c~~cg~~--~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~i~g~C~~c~~~~~~ 139 (139)
T 3MWM_A 90 CRACGKA--VEVEGPAVEKWAEAIAA-EHGYVNVAHTVEIFGTCADCAGASGG 139 (139)
T ss_dssp ETTTCCE--EEECCHHHHHHHHHHHH-HTTCCSCCCCCEEEECCHHHHCC---
T ss_pred eCCCCCE--EEEcChhHHHHHHHHHH-HhCCEeeEEEEEEEEeCHHHhccCCC
No 29
>PF00265.22 ; TK ; Thymidine kinase
Probab=20.52 E-value=57 Score=22.12 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred CcccCCCCCCcccCCCChhhHHHHhcCCCcHHhccchhhcCCCCccc
Q FD01843864_048 40 CVICGKDTGKMVADHKDALVVEYYRTGQNDIAKQTSVDAVQPHCQEH 86 (106)
Q Consensus 40 Cv~CG~~~~~~vADHk~pLVvE~Y~tG~iD~~kmrs~~aVQp~C~tC 86 (106)
|..||.. |+|..-++ +..+.......+..+|.|..|
T Consensus 135 c~~~~~~-----a~~~~~~~------~~~~~~~~~~~~~y~~~c~~~ 170 (171)
T KITH_MYXVL/6-1 135 CMYCYKD-----ASFSKRLG------NETEIEIIGGSDKYKSVCRKC 170 (171)
T ss_pred CccCCCc-----ceeEEecC------CCCCcEEeCCcccEEEccccc
No 30
>8FMW_R 30S ribosomal protein S18; hibernating ribosome, bacterial, pathogen, 70S, translation, RIBOSOME;{Borreliella burgdorferi B31}
Probab=20.12 E-value=1.9e+02 Score=18.18 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCcccCCCCCCcccCCCChhhHHHH
Q FD01843864_048 39 PCVICGKDTGKMVADHKDALVVEYY 63 (106)
Q Consensus 39 pCv~CG~~~~~~vADHk~pLVvE~Y 63 (106)
+|.-|... ...|+++....+.|
T Consensus 1 ~c~~c~~~---~~idykn~~~l~~f 22 (63)
T 8FMW_R 1 SCKFCDSG---KHPDYKDFDFLKKF 22 (63)
T ss_pred CCCcCCCC---CCCCcCCHHHHHHh