Query FD01843847_03051 type IV secretion protein Rhs
Match_columns 94
No_of_seqs 58 out of 64
Neff 4.41018
Searched_HMMs 86581
Date Wed Feb 28 00:09:27 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/5457314.hhr -oa3m ../results/5457314.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF18743.5 ; AHJR-like ; REase_ 60.2 67 0.00077 21.8 5.2 76 2-80 1-76 (125)
2 PF13814.10 ; Replic_Relax ; Re 58.7 22 0.00026 25.1 2.8 33 48-80 138-179 (194)
3 5EZU_B Protein A46; immunomodu 49.4 21 0.00024 25.6 1.4 16 51-66 34-49 (89)
4 PF06054.15 ; CoiA ; Competence 41.9 60 0.00069 26.8 3.2 47 48-94 101-147 (390)
5 2EWF_A Nicking endonuclease N. 41.3 81 0.00094 28.3 4.1 57 37-94 446-519 (610)
6 2N2T_A OR303; Structural Genom 40.9 1E+02 0.0012 21.7 3.6 40 48-87 27-69 (84)
7 2P14_A Heterodimeric restricti 28.0 4.7E+02 0.0054 20.7 6.1 57 37-94 44-112 (192)
8 PF14403.10 ; CP_ATPgrasp_2 ; C 21.0 2.5E+02 0.0029 22.1 3.3 40 41-80 65-104 (377)
No 1
>PF18743.5 ; AHJR-like ; REase_AHJR-like
Probab=60.17 E-value=67 Score=21.79 Aligned_cols=76 Identities=5% Similarity=0.016 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCCCCChhHHHHHHHHHHHHhhCCCCccccccceeecCCCCccccCCCcccccCCCcEEEEEecCCCccCHHHHHHHHh
Q FD01843847_030 2 APQHGGTGHNRNIDDEIAILKDSEGVSDIRKNQQQVDINGNKVGNNKPDIQYDKDGIHHNVEYDTSPRASKNHEKVITA 80 (94)
Q Consensus 2 ~~~hg~~~hn~~i~~~i~~L~~~~g~~dIRkNQqQVd~~G~~VG~NRPDlQyd~~G~r~~vEyD~~~~~~~~H~~rI~~ 80 (94)
........+.......+..|+. .|..=++.+..... --..|..+|||--..++..+-||.-+....+..+..++..
T Consensus 1 ~~~~~~~~e~~~~~~v~~~l~~-~G~~v~~~~~~~~~--~~~~~~~~~Dlia~~~~~~~~iEvK~~~~~~~~~~~~l~~ 76 (125)
T A0A1J1LKF2_9CY 1 ISTLTAKQEREQLLKLAENYCQ-KGYEIFLHPNLEEL--PDFLKSYRPDLIVRRGEEAVVIEVKSRASLNSYSDQYLQN 76 (125)
T ss_pred CCcchhHHHHHHHHHHHHHHHH-CCcEEEecCCHHhC--ChhHhcCCCCEEEEeCCeEEEEEEEcccccCccCHHHHHH
No 2
>PF13814.10 ; Replic_Relax ; Replication-relaxation
Probab=58.69 E-value=22 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCcccccCCC---------cEEEEEecCCCccCHHHHHHHHh
Q FD01843847_030 48 KPDIQYDKDG---------IHHNVEYDTSPRASKNHEKVITA 80 (94)
Q Consensus 48 RPDlQyd~~G---------~r~~vEyD~~~~~~~~H~~rI~~ 80 (94)
+||..+.... ..+.||+|+...+...-...|..
T Consensus 138 ~PD~~~~~~~~~~~~~~~~~~~~iE~d~~t~~~~~~~~k~~~ 179 (194)
T C7QG98_CATAD/4 138 RPDAFGRWKAPAPRGKLRTAEFFLEYDTGSENLERVVGKLDG 179 (194)
T ss_pred CCCeEEEEEccCCCCCCeEEEEEEEEeCCCCCHHHHHHHHHH
No 3
>5EZU_B Protein A46; immunomodulator, beta sheet, ab initio phasing, vaccinia virus, A46, viral protein, fatty acids, myristic acid; HET: MYR; 1.55A {Vaccinia virus (strain Western Reserve)}
Probab=49.42 E-value=21 Score=25.55 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=0.0 Template_Neff=1.600
Q ss_pred ccccCCCcEEEEEecC
Q FD01843847_030 51 IQYDKDGIHHNVEYDT 66 (94)
Q Consensus 51 lQyd~~G~r~~vEyD~ 66 (94)
+|+..++.+|.+|||.
T Consensus 34 iqnevN~t~YtvEfdk 49 (89)
T 5EZU_B 34 IRNEVNDTHYTVEFDR 49 (89)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEeeeCCeEEEEEech
No 4
>PF06054.15 ; CoiA ; Competence protein CoiA-like family
Probab=41.91 E-value=60 Score=26.85 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCcccccCCCcEEEEEecCCCccCHHHHHHHHhcCCCCeEEEEecCC
Q FD01843847_030 48 KPDIQYDKDGIHHNVEYDTSPRASKNHEKVITANDPNARSTFWNIDK 94 (94)
Q Consensus 48 RPDlQyd~~G~r~~vEyD~~~~~~~~H~~rI~~NDP~a~~~~~~i~~ 94 (94)
||||-...+|..+-|||-.+.-....-.+|...---.+...+|+++.
T Consensus 101 r~Dv~~~~~~~~~aiE~q~s~~~~~~~~~R~~~y~~~gi~~~Wi~~~ 147 (390)
T Q8ERT5_OCEIH/1 101 RADLVIKVLNKIIIIEFQCTKISAEEIAERTSAYNQINLHVIWIVGM 147 (390)
T ss_pred EEEEEEEECCEEEEEEEEecCCCHHHHHHHHHHHHhCCCeEEEEecc
No 5
>2EWF_A Nicking endonuclease N.BspD6I; helix-turn-helix, beta-alpha-barrel, HYDROLASE; HET: BR; 1.84A {Bacillus sp.}
Probab=41.31 E-value=81 Score=28.32 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred ecCCCCcc----ccCCCcccccCCCcEEEEE---------ecCCCccCHHHHHHHHhcC--CC--CeEEEEecCC
Q FD01843847_030 37 VDINGNKV----GNNKPDIQYDKDGIHHNVE---------YDTSPRASKNHEKVITAND--PN--ARSTFWNIDK 94 (94)
Q Consensus 37 Vd~~G~~V----G~NRPDlQyd~~G~r~~vE---------yD~~~~~~~~H~~rI~~ND--P~--a~~~~~~i~~ 94 (94)
+|.+|.++ | |.|||-+.++.-...|| |......-.+|-..+...- ++ -.+....|-+
T Consensus 446 ld~d~~P~~~A~G-g~~Di~~~y~~~~~~vEvTL~~~~~Q~~~E~epV~RH~~~~~~~~~~~~~~~~~~~lFIAp 519 (610)
T 2EWF_A 446 IDEELQPVTHAAG-NQPDMEIIYEDFIVLGEVTTSKGATQFKMESEPVTRHYLNKKKELEKQGVEKELYCLFIAP 519 (610)
T ss_dssp ECTTSCEEECCCT-TSCSEEEECSSEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEES
T ss_pred eCCCCCcccCCCC-CCCCEEEEeCCeEEEEEEEcccCCHHHHhhchhHHHHHHHHHHHHHhcCCCccEEEEEEeC
No 6
>2N2T_A OR303; Structural Genomics, Protein NMR, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), Target OR303, PSI-Biology, Protein Structure Initiative, Unknown; NMR {synthetic construct}
Probab=40.89 E-value=1e+02 Score=21.74 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CCcccc---cCCCcEEEEEecCCCccCHHHHHHHHhcCCCCeE
Q FD01843847_030 48 KPDIQY---DKDGIHHNVEYDTSPRASKNHEKVITANDPNARS 87 (94)
Q Consensus 48 RPDlQy---d~~G~r~~vEyD~~~~~~~~H~~rI~~NDP~a~~ 87 (94)
||-+|| +.+|.+---=-.....-...-.+.++.--|+|.|
T Consensus 27 rpsvqytettrngrrqltirsndknevdrileevrrkvpnarv 69 (84)
T 2N2T_A 27 RPSVQYTETTRNGRRQLTIRSNDKNEVDRILEEVRRKVPNARV 69 (84)
T ss_dssp SSCCEEEEEEETTEEEEEEEESCHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCceeeeeccCceeeEEEecCChhHHHHHHHHHHHHCCCCee
No 7
>2P14_A Heterodimeric restriction endonuclease R.BspD6I small subunit; heterodimeric restriction endonuclease, HYDROLASE; HET: SO4; 1.5A {Bacillus sp.}
Probab=27.96 E-value=4.7e+02 Score=20.72 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred ecCCCCcc---ccCCCcccccCCCcEEEEEecCCCccC---------HHHHHHHHhcCCCCeEEEEecCC
Q FD01843847_030 37 VDINGNKV---GNNKPDIQYDKDGIHHNVEYDTSPRAS---------KNHEKVITANDPNARSTFWNIDK 94 (94)
Q Consensus 37 Vd~~G~~V---G~NRPDlQyd~~G~r~~vEyD~~~~~~---------~~H~~rI~~NDP~a~~~~~~i~~ 94 (94)
+|.+|.++ +-|.||+-+..+...+.||.-...++. .+|........ .....+.+-+.
T Consensus 44 ~D~dg~P~~~ApGg~~Di~~~~~~~~~lvEvTL~~~~~Q~~~E~epV~RHl~~~~~~~-k~~~~lFIAp~ 112 (192)
T 2P14_A 44 LDDSGHPIGNAIPGVEDILVEYEHFSILIECSLTIGEKQLDYEGDSVVRHLQEYKKKG-IEAYTLFLGKS 112 (192)
T ss_dssp ECTTSCEEECCCTTSCSEEEECSSCEEEEEEECCCTHHHCCCCCHHHHHHHHHHHTTC-CCEEEEEEESS
T ss_pred ECCCCCccccCCCCCCCEEEEeCCeEEEEEeecccChhHHHHhhHHHHHHHHHHHHhC-CCeEEEEEeCC
No 8
>PF14403.10 ; CP_ATPgrasp_2 ; Circularly permuted ATP-grasp type 2
Probab=20.98 E-value=2.5e+02 Score=22.08 Aligned_cols=40 Identities=18% Similarity=-0.009 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCccccCCCcccccCCCcEEEEEecCCCccCHHHHHHHHh
Q FD01843847_030 41 GNKVGNNKPDIQYDKDGIHHNVEYDTSPRASKNHEKVITA 80 (94)
Q Consensus 41 G~~VG~NRPDlQyd~~G~r~~vEyD~~~~~~~~H~~rI~~ 80 (94)
+..++.-|+|+=++.+|.-..+|+......+..+...+..
T Consensus 65 ~~~~~~~R~D~~~~~~g~~ki~E~N~~~p~g~~~~~~~~~ 104 (377)
T A0A068NMM3_FIM 65 DIYVHICGTDIIRDVDGTYRVLEDNCRTPSGVSYMIENRM 104 (377)
T ss_pred CceEEEEEeEEEECCCCCEEEEecccCCCCcHHHHHHHHH