Query FD01848895_02820 sugar-binding protein
Match_columns 114
No_of_seqs 59 out of 66
Neff 4.02611
Searched_HMMs 86581
Date Mon Feb 26 20:53:13 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8884074.hhr -oa3m ../results/8884074.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15657.10 ; Tox-HNH-EHHH ; HN 93.7 1.2 1.3E-05 26.6 6.5 68 37-113 1-76 (76)
2 7AGW_A K(+)/H(+) antiporter su 66.6 22 0.00025 24.6 3.8 21 48-68 15-35 (71)
3 2KPQ_A Uncharacterized protein 36.6 60 0.0007 23.0 2.2 27 2-28 72-98 (100)
4 PF14026.10 ; SCO4226-like ; Ni 31.1 1.1E+02 0.0012 19.8 2.5 21 2-26 57-77 (77)
5 4OI3_A Nickel responsive prote 30.2 1.4E+02 0.0016 20.4 3.1 25 2-30 65-89 (89)
6 2Y0O_A PROBABLE D-LYXOSE KETOL 25.5 5.2E+02 0.006 20.3 6.6 69 3-82 6-81 (175)
7 7JJ9_A Zinc-binding lipoprotei 23.0 2.4E+02 0.0028 25.0 4.0 41 38-79 387-438 (475)
8 2RH2_A Dihydrofolate reductase 21.5 4.6E+02 0.0053 18.3 4.4 50 18-77 2-52 (62)
No 1
>PF15657.10 ; Tox-HNH-EHHH ; HNH/Endo VII superfamily nuclease toxins
Probab=93.65 E-value=1.2 Score=26.62 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred cceecCCCCCceEEEEEECCCCCeEEEEEecCCCCC--------CCCCcccCCCCCCCCccccccCCCeecccCCCCCCC
Q FD01848895_028 37 NYKYSEDLGSHGRYYEYTDARGHKRVIVEHTADPRA--------PGPHTHAGQPKPGADPRTYDFKNDRYQKINNPSTND 108 (114)
Q Consensus 37 ny~ys~n~~~~Gryyey~~~~G~~rvIVeHtnDp~~--------~~pHfHaG~pK~g~~~~~~df~~~RY~kI~~~~~~d 108 (114)
..........+++.|+|+..+|...+|.+|...... ..+||++.....++. ++.....-+ +..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-g~~ 71 (76)
T C9PMI9_9PAST/1 1 KILDQNNRPIMTREYHYTTPSGEKVVFQEHSLGHVYGPKGTLGNQGPHFNPRQYDPATG--------NGYRNKSFP-GIS 71 (76)
T ss_pred CccCCCCCeeeceEEEEeCCCCCeEEEeeccCCceecCCCCCCCCCCccccccCCCCCC--------CCccccccC-CCc
Q ss_pred CcccC
Q FD01848895_028 109 HHIYY 113 (114)
Q Consensus 109 HH~~Y 113 (114)
.|+.|
T Consensus 72 ~~~~~ 76 (76)
T C9PMI9_9PAST/1 72 EHYNY 76 (76)
T ss_pred cccCC
No 2
>7AGW_A K(+)/H(+) antiporter subunit KhtT; Regulatory protein of K+/H+ antiporter, TRANSPORT PROTEIN; 1.511A {Bacillus subtilis (strain 168)}
Probab=66.63 E-value=22 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred eEEEEEECCCCCeEEEEEecC
Q FD01848895_028 48 GRYYEYTDARGHKRVIVEHTA 68 (114)
Q Consensus 48 Gryyey~~~~G~~rvIVeHtn 68 (114)
|.-|+|++..|...+||-|.+
T Consensus 15 G~~y~~~t~~G~~l~Vv~h~~ 35 (71)
T 7AGW_A 15 GKKFEIETRSHEKMTIIIHDD 35 (71)
T ss_dssp EEEEEEECTTCCEEEEEEETT
T ss_pred eEEEEEEcCCCCEEEEEEECC
No 3
>2KPQ_A Uncharacterized protein; Protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; NMR {Agrobacterium tumefaciens str. C58}
Probab=36.62 E-value=60 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred hHHHHHHHHHhCCCcccCCCceEEeCC
Q FD01848895_028 2 RQALNEAKDLAGIPRSQQPNRQWTVGN 28 (114)
Q Consensus 2 r~A~~~Akd~AGIPrsqqP~~qw~Vg~ 28 (114)
|+||-.|-..|||+-...+...+.|.+
T Consensus 72 R~AF~~Aa~eAgi~v~~~~~~~~~~~~ 98 (100)
T 2KPQ_A 72 RTAFVAASRQAHCLMEDKAEAPNTIAS 98 (100)
T ss_dssp HHHHHHHHHHHTCCCCCCCSSCCCCSC
T ss_pred HHHHHHHHHHCCCeecCcccccccccc
No 4
>PF14026.10 ; SCO4226-like ; Nickel responsive protein SCO4226-like
Probab=31.14 E-value=1.1e+02 Score=19.75 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred hHHHHHHHHHhCCCcccCCCceEEe
Q FD01848895_028 2 RQALNEAKDLAGIPRSQQPNRQWTV 26 (114)
Q Consensus 2 r~A~~~Akd~AGIPrsqqP~~qw~V 26 (114)
+++++++.+++|+| .++-|.|
T Consensus 57 ~e~v~~~~~~~g~p----~~~i~~v 77 (77)
T J7Q501_METSZ/4 57 AAAIKEHAAQGGFP----ANRISEV 77 (77)
T ss_pred HHHHHHHHHHcCCC----CcEEEEC
No 5
>4OI3_A Nickel responsive protein; nickel responsive protein, Structural Genomics, ferredoxin-like fold, a nickel responsive protein, nickel binding, METAL BINDING PROTEIN; HET: MSE; 1.3A {Streptomyces coelicolor}
Probab=30.17 E-value=1.4e+02 Score=20.41 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred hHHHHHHHHHhCCCcccCCCceEEeCCCc
Q FD01848895_028 2 RQALNEAKDLAGIPRSQQPNRQWTVGNNP 30 (114)
Q Consensus 2 r~A~~~Akd~AGIPrsqqP~~qw~Vg~d~ 30 (114)
+++++++.+++|+| +++.|+|.-..
T Consensus 65 ~e~V~~~~~~ag~p----~d~I~eV~~~~ 89 (89)
T 4OI3_A 65 AEAVQRVHERAGHK----ADEIHEVPLSA 89 (89)
T ss_dssp HHHHHHHHHHHTCC----CSEEEECCEEC
T ss_pred HHHHHHHHHHhCCC----CCEEEEeecCC
No 6
>2Y0O_A PROBABLE D-LYXOSE KETOL-ISOMERASE; ISOMERASE, CARBOHYDRATE METABOLISM, METAL-BINDING, SUGAR ISOMERASE, STRESS RESPONSE; HET: SO4, MSE; 1.229A {BACILLUS SUBTILIS SUBSP. SUBTILIS}
Probab=25.45 E-value=5.2e+02 Score=20.34 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHhCCCcccCCCceEEeCCCcccCCCccceecCCCCCceEEE-EEECCCCCeEEEEEecCCCCCCCCCcccC-
Q FD01848895_028 3 QALNEAKDLAGIPRSQQPNRQWTVGNNPMRRGQTNYKYSEDLGSHGRYY-EYTDARGHKRVIVEHTADPRAPGPHTHAG- 80 (114)
Q Consensus 3 ~A~~~Akd~AGIPrsqqP~~qw~Vg~d~~~~g~~ny~ys~n~~~~Gryy-ey~~~~G~~rvIVeHtnDp~~~~pHfHaG- 80 (114)
++++..+..++++...+...+|.|...... +...+|... .+.+.......++.-..+...+ +|.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~l~~g~~~~-~h~H~~~ 74 (175)
T 2Y0O_A 6 EEVNSYYQKAGIVLTDEEVDQIQLMDYGLG----------KERKVGLQLFVYVNTDRYCSKELVLFPGQTCP-EHRHPPV 74 (175)
T ss_dssp HHHHHHHHHTTCCCCHHHHTTCEEECTTSS----------CTTTBCEEEEEEEECSSEEEEEEEECTTCEEE-EEECCCC
T ss_pred HHHHHHHHHhCCCCCHHHHhceEEeecCCC----------CceeeeEEEEEEECCCcceEEEEEeCCCCCCC-ceeCCCC
Q ss_pred -----CC
Q FD01848895_028 81 -----QP 82 (114)
Q Consensus 81 -----~p 82 (114)
+.
T Consensus 75 ~~~~~~~ 81 (175)
T 2Y0O_A 75 DGQEGKQ 81 (175)
T ss_dssp TTSCCCC
T ss_pred CCCCCce
No 7
>7JJ9_A Zinc-binding lipoprotein AdcA; AdcA, SBP, ATP-binding cassette transporter, Zn acquisition, METAL BINDING PROTEIN; 1.58A {Streptococcus pneumoniae (strain ATCC BAA-255 / R6)}
Probab=22.96 E-value=2.4e+02 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred ceecC------CCCCceEEEEEECCCCCe-----EEEEEecCCCCCCCCCccc
Q FD01848895_028 38 YKYSE------DLGSHGRYYEYTDARGHK-----RVIVEHTADPRAPGPHTHA 79 (114)
Q Consensus 38 y~ys~------n~~~~Gryyey~~~~G~~-----rvIVeHtnDp~~~~pHfHa 79 (114)
|.|.. ..+..|..|.|+...+.. .+..+|...|... .|||.
T Consensus 387 Y~y~g~~~~~~~~~~~~~~~~fe~~~~~~~~~~y~~~~~H~~~~~~~-~H~h~ 438 (475)
T 7JJ9_A 387 YKYVGKKILTYKKGNRGVRFLFEATDADAGQFKYVQFSDHNIAPVKA-EHFHI 438 (475)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECCTTCGGGSEEEEECSCCSSCCC-SSEEE
T ss_pred EEEeCeeEEEeeCCcceEEEEEEEcCCCCCCccEEEEeCCCCCCCCC-CeEEE
No 8
>2RH2_A Dihydrofolate reductase type 2; FOLATE METABOLISM, PLASMID-ENCODED R67 DHFR, TMP-RESISTANT DHFR, Antibiotic resistance, Methotrexate resistance, NADP, One-carbon metabolism, Oxidoreductase, Trimethoprim; HET: MRD; 0.96A {Escherichia coli} SCOP: b.34.4.1
Probab=21.48 E-value=4.6e+02 Score=18.33 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred cCCCceEEeCCCcccCCCccceecCCCCCceEE-EEEECCCCCeEEEEEecCCCCCCCCCc
Q FD01848895_028 18 QQPNRQWTVGNNPMRRGQTNYKYSEDLGSHGRY-YEYTDARGHKRVIVEHTADPRAPGPHT 77 (114)
Q Consensus 18 qqP~~qw~Vg~d~~~~g~~ny~ys~n~~~~Gry-yey~~~~G~~rvIVeHtnDp~~~~pHf 77 (114)
......+.+||-..+.. ...-.|.. =.|.|..|.-+|+||+..++-. .|+
T Consensus 2 ~p~~~~F~~Gd~V~K~~--------g~~w~G~VVg~f~T~~~~~gY~VE~~~~~G~--lqI 52 (62)
T 2RH2_A 2 FPSNATFGMGDRVRKKS--------GAAWQGQIVGWYCTNLTPEGYAVESEAHPGS--VQI 52 (62)
T ss_dssp ----CCCCTTCEEEESS--------SSCCEEEEEEEECCSSCSSEEEEEESSSTTC--EEE
T ss_pred CCCCCCCCCCCeEEEeC--------CCccCcEEEEEEeCCCCCcEEEEEeecCCCc--eee