Query FD01543154_02323 Rhs-family protein
Match_columns 117
No_of_seqs 102 out of 244
Neff 4.07831
Searched_HMMs 86581
Date Mon Feb 26 20:52:07 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7695162.hhr -oa3m ../results/7695162.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15657.10 ; Tox-HNH-EHHH ; HN 99.7 8.3E-16 9.6E-21 92.9 7.4 68 50-117 2-76 (76)
2 3BDU_C Putative lipoprotein; x 82.0 3.7 4.2E-05 28.0 3.1 33 42-75 7-42 (62)
3 2RB6_A Uncharacterized protein 79.6 5.4 6.2E-05 27.1 3.3 33 42-75 7-42 (61)
4 2RA2_D Putative lipoprotein; N 79.5 5 5.8E-05 27.5 3.1 33 42-75 8-43 (64)
5 3FIF_E Uncharacterized lipopro 79.4 5.3 6.1E-05 27.1 3.2 33 42-75 7-42 (61)
6 2RD1_A Putative outer membrane 79.0 5.6 6.4E-05 27.2 3.2 33 42-75 7-42 (62)
7 2K57_A Putative Lipoprotein; p 78.1 5.9 6.8E-05 26.9 3.1 33 42-75 7-42 (61)
8 5CAI_E Putative lipoprotein fr 75.7 8.2 9.5E-05 25.4 3.2 33 42-75 8-43 (56)
9 PF06004.16 ; DUF903 ; Bacteria 71.3 12 0.00014 24.0 3.2 33 42-75 4-39 (49)
10 PF09954.13 ; DUF2188 ; Unchara 65.1 25 0.00029 21.6 3.6 36 1-63 24-60 (60)
11 7AGW_A K(+)/H(+) antiporter su 48.5 59 0.00068 22.6 3.5 22 61-82 16-37 (71)
12 PF10751.13 ; DUF2535 ; Protein 41.0 81 0.00093 23.3 3.4 18 60-77 3-20 (83)
13 1N13_I Pyruvoyl-dependent argi 36.3 45 0.00052 22.3 1.4 16 2-17 28-43 (52)
14 1N2M_C Pyruvoyl-dependent argi 27.7 86 0.001 24.7 1.9 16 2-17 28-43 (165)
15 PF21456.1 ; Gp7_6th ; Baseplat 27.6 1.1E+02 0.0012 23.3 2.3 32 14-60 3-35 (93)
16 PF08624.14 ; CRC_subunit ; Chr 26.4 93 0.0011 24.4 1.9 29 39-67 5-33 (133)
17 PF16548.9 ; FlgT_N ; Flagellar 23.9 1.2E+02 0.0014 19.5 1.8 12 4-15 20-31 (88)
18 PF01862.20 ; PvlArgDC ; Pyruvo 21.7 1.4E+02 0.0016 23.8 2.0 16 2-17 15-30 (177)
19 2KPQ_A Uncharacterized protein 21.5 1.4E+02 0.0016 21.3 1.8 19 5-23 72-90 (100)
20 PF18788.5 ; DarA_N ; Defence a 21.4 5.9E+02 0.0069 19.6 5.7 52 6-80 18-69 (123)
21 5JN6_A Uncharacterized protein 20.2 1.7E+02 0.0019 20.7 2.0 15 1-15 48-62 (91)
No 1
>PF15657.10 ; Tox-HNH-EHHH ; HNH/Endo VII superfamily nuclease toxins
Probab=99.66 E-value=8.3e-16 Score=92.87 Aligned_cols=68 Identities=43% Similarity=0.831 Sum_probs=63.2 Template_Neff=11.400
Q ss_pred ccCCCCCeeeeEEEEEECCCCCEEEEEeCCCccccC--CCCCCCCCceeeccCCC-----CCCCcCCCcccccCC
Q FD01543154_023 50 IFDNNGNQVWTREYQFTRADGSKIIIQDHSAGHSYA--DGVGNQGSHLNVRPIEN-----TRTGSVPGTFDHYEF 117 (117)
Q Consensus 50 ild~~g~pi~tReY~f~~~~G~kVvIQdHsaGH~~~--~g~G~qgpHFNvRP~~n-----~rtG~v~Gt~~HY~f 117 (117)
+++.++++++.|+|.|++.+|++++|++|++||.+. .+.+.+++|||++|.+. .++|.++|+..||.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 76 (76)
T C9PMI9_9PAST/1 2 ILDQNNRPIMTREYHYTTPSGEKVVFQEHSLGHVYGPKGTLGNQGPHFNPRQYDPATGNGYRNKSFPGISEHYNY 76 (76)
T ss_pred ccCCCCCeeeceEEEEeCCCCCeEEEeeccCCceecCCCCCCCCCCccccccCCCCCCCCccccccCCCccccCC
Confidence 567888999999999999999999999999999985 37899999999999999 999999999999986
No 2
>3BDU_C Putative lipoprotein; x_Ray, NESG, Q6D8G1, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Lipoprotein; HET: MSE; 1.9A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=82.01 E-value=3.7 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
|+..+|..|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 7 I~t~dG~~i~-t~gkP~~D~~tG~y~y~D~~G~~~~I 42 (62)
T 3BDU_C 7 LHTNDGRTIV-AEGKPKVDDETGMISYTDAYGQQQQI 42 (62)
T ss_dssp EEETTSCEEE-EESCCEEETTTTEEEEEBTTSCEEEE
T ss_pred EEcCCCCEEE-eCCCceEeCCCCcEEEECCCCCEEEe
No 3
>2RB6_A Uncharacterized protein; NESG, Q8EI81_SHEON, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION; HET: MSE; 2.5A {Shewanella oneidensis} SCOP: l.1.1.1, b.38.1.6
Probab=79.64 E-value=5.4 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred ccCCCCCcccCCCCCeeeeEE---EEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVWTRE---YQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~tRe---Y~f~~~~G~kVvI 75 (117)
++..+|..|. ..|+|..-.. |.|+..+|+.+.|
T Consensus 7 Itt~dG~~i~-t~gkP~~D~~tg~y~f~D~~G~~~~I 42 (61)
T 2RB6_A 7 MSTKDGKMIT-SDSKPKLDKTTGMYLYYDEDGREVMI 42 (61)
T ss_dssp EEETTSCEEE-ESSCCEEETTTTEEEEECTTSCEEEE
T ss_pred EECCCCCEEE-cCCCCeEeCCCCcEEEECCCCCEEEE
No 4
>2RA2_D Putative lipoprotein; NESG, StR88A, Q7CPV8, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Lipoprotein, UNKNOWN FUNCTION; HET: MSE; 1.9A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=79.53 E-value=5 Score=27.51 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
++..+|+.|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 8 I~t~dG~~i~-t~gkP~~D~~tG~y~y~D~~G~~~~I 43 (64)
T 2RA2_D 8 MHTNDGRSIV-TDGKPQTDNDTGMISYKDANGNKQQI 43 (64)
T ss_dssp EEETTSCEEE-ESSCCEECTTTCSEEEEBTTSCEEEE
T ss_pred EEcCCCCEEE-eCCCceeeCCCCcEEEECCCCCEEEe
No 5
>3FIF_E Uncharacterized lipoprotein ygdR; ygdR YGDR_ECOLI NESG X-RAY STRUCTURE, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Cell; HET: MSE; 2.7A {Escherichia coli} SCOP: l.1.1.1, b.38.1.6
Probab=79.39 E-value=5.3 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
++..+|..|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 7 Itt~dG~~i~-t~gkP~~D~~tG~y~y~D~~G~~~~I 42 (61)
T 3FIF_E 7 MATKDGRMIL-TDGKPEIDDDTGLVSYHDQQGNAMQI 42 (61)
T ss_dssp EEETTSCEEE-ESSCCEEETTTTEEEECC----CEEE
T ss_pred EEcCCCCEEE-eCCCceEeCCCCcEEEECCCCCEEEe
No 6
>2RD1_A Putative outer membrane lipoprotein; NESG, Q7CQI7, StR87A, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Lipoprotein, UNKNOWN FUNCTION; HET: MSE; 2.3A {Salmonella typhimurium LT2} SCOP: l.1.1.1, b.38.1.6
Probab=78.98 E-value=5.6 Score=27.24 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
|+..+|..|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 7 Itt~dG~~i~-t~gkP~~D~~tG~y~y~D~~G~~~~I 42 (62)
T 2RD1_A 7 MTTKNGQTIV-TQGKPQLDKETGMTSYTDQEGNQREI 42 (62)
T ss_dssp EEETTSCEEE-EESCCEEETTTTEEEEECTTSCEEEE
T ss_pred EEcCCCCEEE-eCCCceEeCCCCcEEEEcCCCCEEEe
No 7
>2K57_A Putative Lipoprotein; putative lipoprotein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, Lipoprotein, unknown function; NMR {Pseudomonas syringae pv. phaseolicola 1448A} SCOP: b.38.1.6, l.1.1.1
Probab=78.13 E-value=5.9 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
++..+|..|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 7 I~t~dG~~i~-t~gkP~~D~~tg~y~y~d~~G~~~~I 42 (61)
T 2K57_A 7 ITLNDGREIQ-AVDTPKYDEESGFYEFKQLDGKQTRI 42 (61)
T ss_dssp EEESSSCEEE-ESSCCEECTTTCEEEEEBTTSCEEEE
T ss_pred EECCCCCEEE-cCCCCeEeCCCCcEEEEeCCCCEEEe
No 8
>5CAI_E Putative lipoprotein from the DUF903 family; lipoprotein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, LIPID-BINDING PROTEIN, LIPID; HET: MSE; 2.3A {Klebsiella pneumoniae subsp. pneumoniae} SCOP: b.38.1.0
Probab=75.74 E-value=8.2 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
++..+|..|. ..|+|.. +--|.|+..+|..+.|
T Consensus 8 I~t~dG~~i~-t~gkP~~d~~tg~y~y~d~~G~~~~I 43 (56)
T 5CAI_E 8 MHTNDGRTIV-TDGKPQTDNDTGMISYKDAWGNKQQI 43 (56)
T ss_dssp EEETTSCEEE-ESSCCEECTTTCSEEEECTTSCEEEE
T ss_pred EEcCCCCEEE-eCCCceeeCCCCcEEEEcCCCCEEEe
No 9
>PF06004.16 ; DUF903 ; Bacterial protein of unknown function (DUF903)
Probab=71.33 E-value=12 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred ccCCCCCcccCCCCCeee---eEEEEEECCCCCEEEE
Q FD01543154_023 42 MTDSRKNPIFDNNGNQVW---TREYQFTRADGSKIII 75 (117)
Q Consensus 42 ltd~~g~~ild~~g~pi~---tReY~f~~~~G~kVvI 75 (117)
++-.+|..|. ..|+|.. +--|.|+..+|+.+.|
T Consensus 4 I~t~dG~~i~-t~gkP~~d~~tg~y~y~d~~G~~~~i 39 (49)
T W0HTX5_9GAMM/2 4 MHTNDGRTIV-TSGKPKVDEDTGMISYQDASGTQQQI 39 (49)
T ss_pred EEcCCCCEEE-eCCCCeEeCCCCcEEEECCCCCEEEE
No 10
>PF09954.13 ; DUF2188 ; Uncharacterized protein conserved in bacteria (DUF2188)
Probab=65.13 E-value=25 Score=21.55 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CcchHHHHHHHHHHh-CCChhhCCceeecCCCCCccccccccccCCCCCcccCCCCCeeeeEEE
Q FD01543154_023 1 FKSRNEAFRAAKRDA-GIPMNQQPDRIFNSKTGFFSDHRNVPMTDSRKNPIFDNNGNQVWTREY 63 (117)
Q Consensus 1 ~~~~~~AfRqAKrDa-GIP~sQqP~~v~~~~~~~~~~~~~v~ltd~~g~~ild~~g~pi~tReY 63 (117)
|.++.+|+..|++-| .- |..+ . |.+.+|.....+.|
T Consensus 24 ~~tk~eAi~~a~~~A~~~-----~~~v-----------~-----------i~~~dG~i~~~~~y 60 (60)
T B2GBG8_LIMF3/5 24 YSTKSEAIKAGRQQAINN-----HAEL-----------V-----------SQKRNGQINLKNSY 60 (60)
T ss_pred cCCHHHHHHHHHHHHHHC-----CCEE-----------E-----------EECCCCCEEEeecC
No 11
>7AGW_A K(+)/H(+) antiporter subunit KhtT; Regulatory protein of K+/H+ antiporter, TRANSPORT PROTEIN; 1.511A {Bacillus subtilis (strain 168)}
Probab=48.46 E-value=59 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred EEEEEECCCCCEEEEEeCCCcc
Q FD01543154_023 61 REYQFTRADGSKIIIQDHSAGH 82 (117)
Q Consensus 61 ReY~f~~~~G~kVvIQdHsaGH 82 (117)
+.|+|+..+|..+.|.-|..|.
T Consensus 16 ~~y~~~t~~G~~l~Vv~h~~G~ 37 (71)
T 7AGW_A 16 KKFEIETRSHEKMTIIIHDDGR 37 (71)
T ss_dssp EEEEEECTTCCEEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEECCCC
No 12
>PF10751.13 ; DUF2535 ; Protein of unknown function (DUF2535)
Probab=41.01 E-value=81 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred eEEEEEECCCCCEEEEEe
Q FD01543154_023 60 TREYQFTRADGSKIIIQD 77 (117)
Q Consensus 60 tReY~f~~~~G~kVvIQd 77 (117)
+..++|.+.+|.+|.|-|
T Consensus 3 ~KslEFk~~~GqKVkI~d 20 (83)
T U5LBA9_9BACI/1 3 FKSLEFKNAVGQKVKVIE 20 (83)
T ss_pred eEEEEEECCCCCeEEEEE
No 13
>1N13_I Pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, arginine decarboxylase, agmatine, arginine, LYASE; HET: AG2, MRD, PYR; 1.4A {Methanocaldococcus jannaschii} SCOP: d.155.1.2
Probab=36.27 E-value=45 Score=22.34 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred cchHHHHHHHHHHhCC
Q FD01543154_023 2 KSRNEAFRAAKRDAGI 17 (117)
Q Consensus 2 ~~~~~AfRqAKrDaGI 17 (117)
++...||..|.++|||
T Consensus 28 ~t~l~AfD~AL~~AGI 43 (52)
T 1N13_I 28 ETPLNAFDGALLNAGI 43 (52)
T ss_dssp SSHHHHHHHHHHHHTC
T ss_pred CCcccHHHHHHHHCCC
No 14
>1N2M_C Pyruvoyl-dependent arginine decarboxylase; pyruvoyl group, pyruvate, agmatine, arginine decarboxylase, LYASE; HET: MRD; 1.9A {Methanocaldococcus jannaschii} SCOP: d.155.1.2
Probab=27.69 E-value=86 Score=24.74 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred cchHHHHHHHHHHhCC
Q FD01543154_023 2 KSRNEAFRAAKRDAGI 17 (117)
Q Consensus 2 ~~~~~AfRqAKrDaGI 17 (117)
++...||..|.+||||
T Consensus 28 ~~~l~AfD~AL~~AGI 43 (165)
T 1N2M_C 28 ETPLNAFDGALLNAGI 43 (165)
T ss_dssp SSHHHHHHHHHHHHTC
T ss_pred CChHhHHHHHHHHcCC
No 15
>PF21456.1 ; Gp7_6th ; Baseplate wedge protein gp7, domain VI
Probab=27.56 E-value=1.1e+02 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred HhCCChhhCCceeecCCCCCccccccccccCCCCCcccCCC-CCeeee
Q FD01543154_023 14 DAGIPMNQQPDRIFNSKTGFFSDHRNVPMTDSRKNPIFDNN-GNQVWT 60 (117)
Q Consensus 14 DaGIP~sQqP~~v~~~~~~~~~~~~~v~ltd~~g~~ild~~-g~pi~t 60 (117)
||||| +.-|+++ ...|.+|+...|.- |.++..
T Consensus 3 DsGlP-s~~pdrv--------------a~ld~~g~~~~d~~TGe~~y~ 35 (93)
T Q5QBX7_9CAUD/9 3 DSGLP-SEWYDRV--------------AVIGFDGNIERDPRTGAPMYN 35 (93)
T ss_pred cCCCC-Cccccee--------------eeeCCCCCeeeCCCCCceeee
No 16
>PF08624.14 ; CRC_subunit ; Chromatin remodelling complex Rsc7/Swp82 subunit
Probab=26.43 E-value=93 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred cccccCCCCCcccCCCCCeeeeEEEEEEC
Q FD01543154_023 39 NVPMTDSRKNPIFDNNGNQVWTREYQFTR 67 (117)
Q Consensus 39 ~v~ltd~~g~~ild~~g~pi~tReY~f~~ 67 (117)
.+...|..|..-+|++|+....|+|.|..
T Consensus 5 y~~~~D~~GE~KId~~G~LlggR~y~~~t 33 (133)
T A2RB40_ASPNC/2 5 VALPDDPEGETKVDKNGNLLGDREYRVRV 33 (133)
T ss_pred ccCCCChhcCcccCCCCCcCCCeeEEeeE
No 17
>PF16548.9 ; FlgT_N ; Flagellar assembly protein T, N-terminal domain
Probab=23.88 E-value=1.2e+02 Score=19.46 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred hHHHHHHHHHHh
Q FD01543154_023 4 RNEAFRAAKRDA 15 (117)
Q Consensus 4 ~~~AfRqAKrDa 15 (117)
|..|+..|++.|
T Consensus 20 r~~A~~~A~~~a 31 (88)
T Q5QYW7_IDILO/2 20 REKAIENALQQA 31 (88)
T ss_pred HHHHHHHHHHHH
No 18
>PF01862.20 ; PvlArgDC ; Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
Probab=21.66 E-value=1.4e+02 Score=23.75 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred cchHHHHHHHHHHhCC
Q FD01543154_023 2 KSRNEAFRAAKRDAGI 17 (117)
Q Consensus 2 ~~~~~AfRqAKrDaGI 17 (117)
.+...||-.|.+||||
T Consensus 15 ~~~l~AfD~AL~~AGI 30 (177)
T D8P811_9BACT/2 15 KEKLAAFEQALRSAGV 30 (177)
T ss_pred CchHHHHHHHHHHCCC
No 19
>2KPQ_A Uncharacterized protein; Protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; NMR {Agrobacterium tumefaciens str. C58}
Probab=21.45 E-value=1.4e+02 Score=21.34 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHhCCChhhCC
Q FD01543154_023 5 NEAFRAAKRDAGIPMNQQP 23 (117)
Q Consensus 5 ~~AfRqAKrDaGIP~sQqP 23 (117)
++||..|-++|||+....+
T Consensus 72 R~AF~~Aa~eAgi~v~~~~ 90 (100)
T 2KPQ_A 72 RTAFVAASRQAHCLMEDKA 90 (100)
T ss_dssp HHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHCCCeecCcc
No 20
>PF18788.5 ; DarA_N ; Defence against restriction A N-terminal
Probab=21.41 E-value=5.9e+02 Score=19.59 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHHhCCChhhCCceeecCCCCCccccccccccCCCCCcccCCCCCeeeeEEEEEECCCCCEEEEEeCCC
Q FD01543154_023 6 EAFRAAKRDAGIPMNQQPDRIFNSKTGFFSDHRNVPMTDSRKNPIFDNNGNQVWTREYQFTRADGSKIIIQDHSA 80 (117)
Q Consensus 6 ~AfRqAKrDaGIP~sQqP~~v~~~~~~~~~~~~~v~ltd~~g~~ild~~g~pi~tReY~f~~~~G~kVvIQdHsa 80 (117)
.+|..|-..||-+....-... .++.=.+ -+..+...|.-+||..|.|+-|..
T Consensus 18 k~l~~~l~kag~~v~~~~~~~-----------~k~~k~~------------gv~~~~~~~~~sdGQtvti~~~~~ 69 (123)
T A0A140E5E9_9GA 18 EMLQTVMERVGGDVKPIAMQL-----------SDPFKQN------------GVAQVAAVFELSDGQTVSIFFHNP 69 (123)
T ss_pred HHHHHHHHHcCCCccceeccC-----------CCCcccC------------CeeEEEEEEEcCCCCEEEEEEECC
No 21
>5JN6_A Uncharacterized protein; ribosome, protein-protein interaction, Structural Genomics, Structural Genomics Consortium, SGC, UNKNOWN FUNCTION; NMR {Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)}
Probab=20.17 E-value=1.7e+02 Score=20.74 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CcchHHHHHHHHHHh
Q FD01543154_023 1 FKSRNEAFRAAKRDA 15 (117)
Q Consensus 1 ~~~~~~AfRqAKrDa 15 (117)
|.++.+|+..|++.|
T Consensus 48 ~~tk~eAi~aA~~~A 62 (91)
T 5JN6_A 48 YSSKEAAFEAACAAA 62 (91)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH