Query FD01848883_01893 type IV secretion protein Rhs
Match_columns 107
No_of_seqs 36 out of 38
Neff 4.09011
Searched_HMMs 86581
Date Mon Feb 26 20:50:52 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6710979.hhr -oa3m ../results/6710979.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7DKK_C De novo design protein 77.4 8 9.2E-05 28.3 3.7 35 14-51 19-55 (89)
2 7DKO_B de novo designed protei 76.2 9.6 0.00011 28.0 3.9 35 14-51 20-56 (92)
3 PF14090.10 ; HTH_39 ; Helix-tu 53.1 53 0.00061 20.2 3.6 37 14-50 30-68 (68)
4 PF15385.10 ; SARG ; Specifical 31.2 71 0.00082 30.7 2.3 17 13-29 309-325 (576)
5 2KPQ_A Uncharacterized protein 30.3 1.1E+02 0.0013 21.4 2.7 37 4-40 63-99 (100)
6 4P0E_A Maf-like protein YhdE; 30.2 58 0.00067 25.1 1.4 23 11-33 7-29 (189)
7 PF02545.18 ; Maf ; Maf-like pr 26.8 74 0.00086 24.2 1.4 21 11-31 6-26 (181)
8 PF13986.10 ; DUF4224 ; Domain 26.0 1.3E+02 0.0014 18.3 2.1 19 8-26 11-29 (45)
9 5F6Q_A Metallothiol transferas 25.6 2.7E+02 0.0031 18.2 3.7 59 14-76 80-138 (142)
10 PF09413.14 ; DUF2007 ; Putativ 25.6 85 0.00098 18.2 1.2 11 17-27 17-27 (65)
11 1N13_I Pyruvoyl-dependent argi 24.2 93 0.0011 20.6 1.3 22 4-25 22-43 (52)
12 2A4X_A Mitomycin-Binding Prote 24.0 3.4E+02 0.0039 17.8 6.2 53 14-74 86-138 (138)
13 2P5X_A N-acetylserotonin O-met 23.5 98 0.0011 25.0 1.6 22 11-32 10-31 (230)
14 PF09601.14 ; DUF2459 ; Protein 22.8 1.4E+02 0.0016 23.1 2.3 18 11-28 147-164 (170)
15 PF15255.10 ; CAP-ZIP_m ; WASH 22.0 1.2E+02 0.0013 23.4 1.7 15 11-25 99-113 (138)
16 PF14026.10 ; SCO4226-like ; Ni 21.3 1.7E+02 0.0019 18.6 2.1 18 12-29 56-73 (77)
17 1EX2_A PROTEIN MAF; B. subtili 20.4 1.2E+02 0.0014 23.5 1.5 22 11-32 9-30 (189)
18 PF02655.18 ; ATP-grasp_3 ; ATP 20.4 1.8E+02 0.0021 19.1 2.2 17 11-27 2-18 (167)
No 1
>7DKK_C De novo design protein XM2H; Monomer, Ferredoxin-like, DE NOVO PROTEIN; 2.1A {N/A}
Probab=77.38 E-value=8 Score=28.28 Aligned_cols=35 Identities=40% Similarity=0.613 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred HHHH--HHHHHcCCCcccCCceeccCCCCcEEEEEcCCCC
Q FD01848883_018 14 AARR--EAMRQAGIPTSQQPISQSQNSSGREYSYETPKPG 51 (107)
Q Consensus 14 aARR--eAMR~aGIPTSqqP~sQ~~~~~~~qY~Y~~~~~g 51 (107)
+||| |+||.||| +-|+.-.-..++-.|.|++..++
T Consensus 19 AARRLAE~L~~AGi---SG~i~i~~EA~~i~~~Y~~~~~~ 55 (89)
T 7DKK_C 19 AARRLAERLLAAGI---SGKIKIEVEANGIKYEYEVEGPA 55 (89)
T ss_dssp HHHHHHHHHHHSCC---CSCEEEEEEETTEEEEEEECCCC
T ss_pred HHHHHHHHHHHCCC---CccEEEEEEeCCeEEEEEEeCCC
No 2
>7DKO_B de novo designed protein AM2M; Monomer, Ferredoxin-like, DE NOVO PROTEIN; 2.6A {N/A}
Probab=76.18 E-value=9.6 Score=28.02 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred HHHH--HHHHHcCCCcccCCceeccCCCCcEEEEEcCCCC
Q FD01848883_018 14 AARR--EAMRQAGIPTSQQPISQSQNSSGREYSYETPKPG 51 (107)
Q Consensus 14 aARR--eAMR~aGIPTSqqP~sQ~~~~~~~qY~Y~~~~~g 51 (107)
+||| |+||.||| +-|+.-.-..++-.|.|++..++
T Consensus 20 AARRLAE~L~~AGi---SG~i~i~~EA~~i~~~Y~~~~~~ 56 (92)
T 7DKO_B 20 AARRLAEALRKAGV---SGPVTVTAEAGDVSFSYTADLDG 56 (92)
T ss_dssp HHHHHHHHHHTTCC---CEEEEEEEEETTEEEEEEEEECS
T ss_pred HHHHHHHHHHHCCC---CcCEEEEEeeCCeEEEEEEcCCC
No 3
>PF14090.10 ; HTH_39 ; Helix-turn-helix domain
Probab=53.08 E-value=53 Score=20.23 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHcCCCcccCCceeccCCCC--cEEEEEcCCC
Q FD01848883_018 14 AARREAMRQAGIPTSQQPISQSQNSSG--REYSYETPKP 50 (107)
Q Consensus 14 aARReAMR~aGIPTSqqP~sQ~~~~~~--~qY~Y~~~~~ 50 (107)
++|--.||+.|+|+...+.......+. +...|.+..+
T Consensus 30 ~~~I~~Lr~~G~~I~~~~~~~~~~~G~~~~~~~Y~l~~~ 68 (68)
T A1VQM2_POLNA/2 30 RARVLQLRNAGESITTTWTRIATESGDLHRVGVYVLATG 68 (68)
T ss_pred HHHHHHHHHCCCCcEEEEEEEECCCCCEEEEEEEEEcCC
No 4
>PF15385.10 ; SARG ; Specifically androgen-regulated gene protein
Probab=31.24 E-value=71 Score=30.72 Aligned_cols=17 Identities=47% Similarity=0.841 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHHHHHcCCCccc
Q FD01848883_018 13 RAARREAMRQAGIPTSQ 29 (107)
Q Consensus 13 raARReAMR~aGIPTSq 29 (107)
+.|||||||+.|.|-++
T Consensus 309 qKaR~EAL~KLGLlkd~ 325 (576)
T I3N1B0_ICTTR/3 309 RKARREALEKLGLPQDP 325 (576)
T ss_pred HHHHHHHHHHhCCCCCC
No 5
>2KPQ_A Uncharacterized protein; Protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; NMR {Agrobacterium tumefaciens str. C58}
Probab=30.26 E-value=1.1e+02 Score=21.42 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CcCCcccchHHHHHHHHHHcCCCcccCCceeccCCCC
Q FD01848883_018 4 SENNPFDSSRAARREAMRQAGIPTSQQPISQSQNSSG 40 (107)
Q Consensus 4 ~~~~~~~TSraARReAMR~aGIPTSqqP~sQ~~~~~~ 40 (107)
.........|.|-..|.+++||++...+..-....+|
T Consensus 63 ~G~~~~~~AR~AF~~Aa~eAgi~v~~~~~~~~~~~~~ 99 (100)
T 2KPQ_A 63 MGDVAGEIARTAFVAASRQAHCLMEDKAEAPNTIASG 99 (100)
T ss_dssp HTCSCHHHHHHHHHHHHHHHTCCCCCCCSSCCCCSCC
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeecCccccccccccC
No 6
>4P0E_A Maf-like protein YhdE; YhdE E33A p212121, unknown function; HET: SO4, PO4; 2.3A {Escherichia coli} SCOP: c.51.4.0
Probab=30.21 E-value=58 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred chHHHHHHHHHHcCCCcccCCce
Q FD01848883_018 11 SSRAARREAMRQAGIPTSQQPIS 33 (107)
Q Consensus 11 TSraARReAMR~aGIPTSqqP~s 33 (107)
|+...|++.|+++|||....|..
T Consensus 7 S~S~~R~~lL~~~g~~f~v~~~~ 29 (189)
T 4P0E_A 7 SGSPRRQELLAQLGVTFERIVTG 29 (189)
T ss_dssp CCCHHHHHHHHHTTCCEEECCCC
T ss_pred CCCHHHHHHHHHcCCCeEEECCC
No 7
>PF02545.18 ; Maf ; Maf-like protein
Probab=26.79 E-value=74 Score=24.25 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred chHHHHHHHHHHcCCCcccCC
Q FD01848883_018 11 SSRAARREAMRQAGIPTSQQP 31 (107)
Q Consensus 11 TSraARReAMR~aGIPTSqqP 31 (107)
|+...|++.|+++||+....|
T Consensus 6 S~S~~R~~lL~~~g~~f~~~~ 26 (181)
T C4L4M0_EXISA/7 6 SMSPRRTELLTKAGIEHEVIP 26 (181)
T ss_pred CCCHHHHHHHHHcCCCeEEeC
No 8
>PF13986.10 ; DUF4224 ; Domain of unknown function (DUF4224)
Probab=25.98 E-value=1.3e+02 Score=18.30 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred cccchHHHHHHHHHHcCCC
Q FD01848883_018 8 PFDSSRAARREAMRQAGIP 26 (107)
Q Consensus 8 ~~~TSraARReAMR~aGIP 26 (107)
.....+++..+.|++.|||
T Consensus 11 TG~~~~~~q~~wL~~~gi~ 29 (45)
T C5A9Q5_BURGB/2 11 TGRKIKSKQIEALRRMGVP 29 (45)
T ss_pred HCCCCHHHHHHHHHHCCCC
No 9
>5F6Q_A Metallothiol transferase FosB 2; alpha-beta fold, Transferase, PSI-Biology, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID; HET: SO4, GOL; 1.52A {Bacillus anthracis} SCOP: l.1.1.1, d.32.1.0
Probab=25.57 E-value=2.7e+02 Score=18.23 Aligned_cols=59 Identities=8% Similarity=-0.051 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHcCCCcccCCceeccCCCCcEEEEEcCCCCCCcceeeEEEecCCCCCCCCCcccc
Q FD01848883_018 14 AARREAMRQAGIPTSQQPISQSQNSSGREYSYETPKPGGGTGLSSVQEQTMDISHPDKPHWEA 76 (107)
Q Consensus 14 aARReAMR~aGIPTSqqP~sQ~~~~~~~qY~Y~~~~~gg~~~~~~V~~h~~D~~Hp~~PHWea 76 (107)
.+-++.|+++|+++...|.... +..+...+..+.|................+...+|+.
T Consensus 80 ~~~~~~l~~~g~~~~~~~~~~~----~~~~~~~~~dp~G~~~~~~~~~~~~~~~~~~~~~~~~ 138 (142)
T 5F6Q_A 80 DHLKEVLIQNDVNILPGRERDE----RDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHM 138 (142)
T ss_dssp HHHHHHHHHTTCEEECCCCCCG----GGCCEEEEECTTCCEEEEECCCHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHCCCeecCCccccC----CCeEEEEEECCCCCEEEEEecccchhhHHhHhhcccc
No 10
>PF09413.14 ; DUF2007 ; Putative prokaryotic signal transducing protein
Probab=25.56 E-value=85 Score=18.23 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHcCCCc
Q FD01848883_018 17 REAMRQAGIPT 27 (107)
Q Consensus 17 ReAMR~aGIPT 27 (107)
+..|+++|||+
T Consensus 17 ~~~L~~~gI~~ 27 (65)
T Q8A1E5_BACTN/8 17 KGLLESNDIRC 27 (65)
T ss_pred HHHHHHCCCee
No 11
>1N13_I Pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, arginine decarboxylase, agmatine, arginine, LYASE; HET: AG2, MRD, PYR; 1.4A {Methanocaldococcus jannaschii} SCOP: d.155.1.2
Probab=24.18 E-value=93 Score=20.55 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CcCCcccchHHHHHHHHHHcCC
Q FD01848883_018 4 SENNPFDSSRAARREAMRQAGI 25 (107)
Q Consensus 4 ~~~~~~~TSraARReAMR~aGI 25 (107)
...+.+.|.-.|.-.||++|||
T Consensus 22 ~G~G~~~t~l~AfD~AL~~AGI 43 (52)
T 1N13_I 22 AGSSEGETPLNAFDGALLNAGI 43 (52)
T ss_dssp EEEEECSSHHHHHHHHHHHHTC
T ss_pred eeEecCCCcccHHHHHHHHCCC
No 12
>2A4X_A Mitomycin-Binding Protein; alfa/beta protein, Mitomycin C-binding protein, Bleomycin A2, ANTIMICROBIAL PROTEIN, Structural Genomics; HET: BLM; 1.4A {Streptomyces caespitosus} SCOP: d.32.1.2, l.1.1.1
Probab=24.04 E-value=3.4e+02 Score=17.78 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHcCCCcccCCceeccCCCCcEEEEEcCCCCCCcceeeEEEecCCCCCCCCCcc
Q FD01848883_018 14 AARREAMRQAGIPTSQQPISQSQNSSGREYSYETPKPGGGTGLSSVQEQTMDISHPDKPHW 74 (107)
Q Consensus 14 aARReAMR~aGIPTSqqP~sQ~~~~~~~qY~Y~~~~~gg~~~~~~V~~h~~D~~Hp~~PHW 74 (107)
.+-.+.|.++|+.+-..|.... .+..|.|-....| .++-..+..+..|- .+||
T Consensus 86 ~~~~~~l~~~g~~~~~~~~~~~---~g~~~~~~~dp~G----~~~e~~~~~~~~~~-~~~~ 138 (138)
T 2A4X_A 86 DKKYAELVDAGYEGHLKPWNAV---WGQRYAIVKDPDG----NVVDLFAPLPLEHH-HHHH 138 (138)
T ss_dssp HHHHHHHHHTTCCEEEEEEEET---TTEEEEEEECTTC----CEEEEEEECTTC-------
T ss_pred HHHHHHHHHCCCccccCcccCC---CcceEEEEECCCC----CEEEEecCCCCCCC-CCCC
No 13
>2P5X_A N-acetylserotonin O-methyltransferase-like protein; asmtl, Structural Genomics, Structural Genomics Consortium, SGC, CELL CYCLE; HET: PO4; 2.0A {Homo sapiens} SCOP: c.51.4.0
Probab=23.51 E-value=98 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred chHHHHHHHHHHcCCCcccCCc
Q FD01848883_018 11 SSRAARREAMRQAGIPTSQQPI 32 (107)
Q Consensus 11 TSraARReAMR~aGIPTSqqP~ 32 (107)
|+...|++.|+++||+...-|.
T Consensus 10 S~S~~R~~lL~~~gi~f~v~~~ 31 (230)
T 2P5X_A 10 SASPRRQEILSNAGLRFEVVPS 31 (230)
T ss_dssp CCCHHHHHHHHHTTCCCEECCC
T ss_pred CCCHHHHHHHHHCCCCcEEeCC
No 14
>PF09601.14 ; DUF2459 ; Protein of unknown function (DUF2459)
Probab=22.85 E-value=1.4e+02 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred chHHHHHHHHHHcCCCcc
Q FD01848883_018 11 SSRAARREAMRQAGIPTS 28 (107)
Q Consensus 11 TSraARReAMR~aGIPTS 28 (107)
|++.==-++||+|||||+
T Consensus 147 tCN~Wta~~L~~aG~~~~ 164 (170)
T F2IC96_FLUTR/5 147 TCNTWTNNALKRAGQKAC 164 (170)
T ss_pred ChHHHHHHHHHHCCCCcc
No 15
>PF15255.10 ; CAP-ZIP_m ; WASH complex subunit CAP-Z interacting, central region
Probab=21.97 E-value=1.2e+02 Score=23.41 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred chHHHHHHHHHHcCC
Q FD01848883_018 11 SSRAARREAMRQAGI 25 (107)
Q Consensus 11 TSraARReAMR~aGI 25 (107)
.||.||+++++..++
T Consensus 99 pSR~aR~~a~~~s~~ 113 (138)
T WASC2_RAT/931- 99 QTRAARRLAAQESSE 113 (138)
T ss_pred chHHHHHHHHhhccc
No 16
>PF14026.10 ; SCO4226-like ; Nickel responsive protein SCO4226-like
Probab=21.35 E-value=1.7e+02 Score=18.63 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred hHHHHHHHHHHcCCCccc
Q FD01848883_018 12 SRAARREAMRQAGIPTSQ 29 (107)
Q Consensus 12 SraARReAMR~aGIPTSq 29 (107)
|+++=+++.+++|+|...
T Consensus 56 d~e~v~~~~~~~g~p~~~ 73 (77)
T J7Q501_METSZ/4 56 NAAAIKEHAAQGGFPANR 73 (77)
T ss_pred CHHHHHHHHHHcCCCCcE
No 17
>1EX2_A PROTEIN MAF; B. subtilis protein Maf, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; HET: PO4, GLC, FRU; 1.85A {Bacillus subtilis} SCOP: c.51.4.2
Probab=20.44 E-value=1.2e+02 Score=23.51 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred chHHHHHHHHHHcCCCcccCCc
Q FD01848883_018 11 SSRAARREAMRQAGIPTSQQPI 32 (107)
Q Consensus 11 TSraARReAMR~aGIPTSqqP~ 32 (107)
|+...|++.|+++||+....|.
T Consensus 9 S~S~~R~~lL~~~g~~f~v~~~ 30 (189)
T 1EX2_A 9 SQSPRRKELLDLLQLPYSIIVS 30 (189)
T ss_dssp CCCHHHHHHHHTTCCCCEECCC
T ss_pred CCCHHHHHHHHHCCCCcEEECC
No 18
>PF02655.18 ; ATP-grasp_3 ; ATP-grasp domain
Probab=20.40 E-value=1.8e+02 Score=19.13 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred chHHHHHHHHHHcCCCc
Q FD01848883_018 11 SSRAARREAMRQAGIPT 27 (107)
Q Consensus 11 TSraARReAMR~aGIPT 27 (107)
.++..-++.|+++|||+
T Consensus 2 ~dK~~~~~~~~~~gi~~ 18 (167)
T Q97H24_CLOAB/1 2 NDKWKSYEFFKENQVKC 18 (167)
T ss_pred CcHHHHHHHHHHCCCCC