Query FD01848827_02686 RHS repeat family protein
Match_columns 105
No_of_seqs 13 out of 17
Neff 2.36269
Searched_HMMs 86581
Date Mon Feb 26 22:37:25 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2529721.hhr -oa3m ../results/2529721.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09954.13 ; DUF2188 ; Unchara 71.9 23 0.00026 20.9 4.2 41 8-48 13-55 (60)
2 PF21785.1 ; Bflower_2 ; 5-fold 57.8 36 0.00042 23.1 3.5 24 39-63 54-77 (116)
3 3BL4_B Uncharacterized protein 48.0 23 0.00027 21.2 1.3 15 18-32 110-124 (124)
4 7R7C_m Ribosome biogenesis pro 46.0 24 0.00028 22.9 1.3 13 73-85 15-27 (63)
5 8I9Z_CC Ribosome biogenesis pr 45.3 17 0.0002 33.6 0.7 13 73-85 182-194 (801)
6 PF13788.10 ; DUF4180 ; Domain 41.3 30 0.00035 22.0 1.2 11 18-28 100-110 (111)
7 PF21784.1 ; Bflower ; 4-fold b 41.1 84 0.00097 22.5 3.4 28 36-65 38-65 (121)
8 2Q3L_A Uncharacterized protein 39.7 36 0.00041 20.0 1.2 11 18-28 114-124 (126)
9 4U7A_A Ribosome biogenesis pro 39.5 24 0.00028 33.2 0.7 13 73-85 186-198 (826)
10 2OOK_A Hypothetical protein; Y 38.0 36 0.00041 20.0 1.0 14 18-31 114-127 (127)
11 PF11360.12 ; DUF3110 ; Protein 36.5 51 0.00059 22.5 1.7 16 17-32 32-47 (89)
12 5UP1_A EEHEE_rd3_1049; de novo 31.2 91 0.0011 22.3 2.3 25 6-32 22-46 (64)
13 8ESR_m Ribosome biogenesis pro 30.4 42 0.00049 30.4 0.7 13 73-85 126-138 (740)
14 PF21785.1 ; Bflower_2 ; 5-fold 29.1 1.9E+02 0.0022 19.6 3.5 22 37-59 1-22 (116)
15 PF10386.13 ; DUF2441 ; Protein 27.7 96 0.0011 22.9 2.1 25 17-41 78-102 (140)
16 7T4X_C Potassium channel AKT1; 27.4 3.4E+02 0.0039 23.7 5.3 62 2-63 792-856 (857)
17 5UJP_B Glyoxalase/bleomycin re 26.8 2.2E+02 0.0025 16.5 5.2 73 11-83 1-73 (114)
18 PF11834.12 ; KHA ; KHA, dimeri 26.8 1.9E+02 0.0022 15.7 4.1 35 14-48 16-50 (64)
19 PF04800.16 ; NDUS4 ; NADH dehy 26.6 85 0.00098 21.7 1.5 18 15-32 50-67 (96)
20 PF08145.16 ; BOP1NT ; BOP1NT ( 25.8 67 0.00077 27.1 1.1 13 73-85 3-15 (259)
21 PF08350.14 ; FilR1_middle ; Me 24.6 1E+02 0.0012 18.5 1.5 17 17-33 37-53 (62)
22 2LJU_A Putative oxidoreductase 21.8 1.1E+02 0.0013 21.5 1.4 18 15-32 62-79 (108)
23 PF04981.17 ; NMD3 ; NMD3 famil 21.6 2.7E+02 0.0031 21.4 3.5 44 15-59 178-221 (229)
24 PF11964.12 ; SpoIIAA-like ; Sp 21.6 80 0.00093 17.8 0.6 13 18-30 92-106 (106)
25 PF05593.18 ; RHS_repeat ; RHS 20.0 2.5E+02 0.0029 16.3 2.4 18 41-59 1-20 (41)
No 1
>PF09954.13 ; DUF2188 ; Uncharacterized protein conserved in bacteria (DUF2188)
Probab=71.88 E-value=23 Score=20.95 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ccCCceeehhccCChHHHHHHHHHHh--cCCceEEECCCCCEE
Q FD01848827_026 8 TKKGTTKVDTLFNNMNDAKNWAANQL--GLGKTRIYDSNGKWI 48 (105)
Q Consensus 8 tKKg~~K~~~lf~d~n~A~N~~r~~l--G~~~~r~y~~~gkw~ 48 (105)
+.-|..+....|+++.+|+..|+.+. ......+++++|++.
T Consensus 13 ~~~~~~~~~~~~~tk~eAi~~a~~~A~~~~~~v~i~~~dG~i~ 55 (60)
T B2GBG8_LIMF3/5 13 KSSGSPRASKIYSTKSEAIKAGRQQAINNHAELVSQKRNGQIN 55 (60)
T ss_pred EeCCCCCCeeecCCHHHHHHHHHHHHHHCCCEEEEECCCCCEE
No 2
>PF21785.1 ; Bflower_2 ; 5-fold beta-flower protein
Probab=57.78 E-value=36 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred EEECCCCCEEEEEcCCCCeeEecCC
Q FD01848827_026 39 RIYDSNGKWIGWQNKAGDSVYWGHG 63 (105)
Q Consensus 39 r~y~~~gkw~GW~n~~Gd~vYW~Hg 63 (105)
.+||.+|++.|+..+.| .||...|
T Consensus 54 ~i~d~~G~~vg~i~~~g-~v~d~~g 77 (116)
T A0A1G6CB15_9FL 54 TIQNGNHTIVGYVKING-TVQDMNH 77 (116)
T ss_pred EEECCCCCEEEEEccCC-EEEcCCC
No 3
>3BL4_B Uncharacterized protein; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function; HET: SO4, MSE; 2.2A {Arthrobacter sp.}
Probab=48.04 E-value=23 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred ccCChHHHHHHHHHH
Q FD01848827_026 18 LFNNMNDAKNWAANQ 32 (105)
Q Consensus 18 lf~d~n~A~N~~r~~ 32 (105)
.|.+..+|++|.+..
T Consensus 110 ~F~~~~eA~~Wl~~~ 124 (124)
T 3BL4_B 110 FFTSERDALTWLALT 124 (124)
T ss_dssp EESCHHHHHHHHHCC
T ss_pred ecCCHHHHHHHHhcC
No 4
>7R7C_m Ribosome biogenesis protein ERB1; ribosome biogenesis, DEAD-box ATPases, methyltransferase, nucleolus, RIBOSOME;{Saccharomyces cerevisiae BY4741}
Probab=45.97 E-value=24 Score=22.91 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cCCceeeeeCCCc
Q FD01848827_026 73 TFPHLNININGEK 85 (105)
Q Consensus 73 ~fPHlNy~i~g~k 85 (105)
.++|+.|+++|.+
T Consensus 15 ~~~higYd~~G~k 27 (63)
T 7R7C_m 15 EMPHIGYDINGKR 27 (63)
T ss_dssp SSSEEEECTTSCE
T ss_pred CCCceeeecCCCc
No 5
>8I9Z_CC Ribosome biogenesis protein ERB1; Ribosome, Ribosome biogenesis, pre-60S ribosome; HET: ADP, GTP; 2.7A {Chaetomium thermophilum}
Probab=45.34 E-value=17 Score=33.60 Aligned_cols=13 Identities=46% Similarity=1.119 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred cCCceeeeeCCCc
Q FD01848827_026 73 TFPHLNININGEK 85 (105)
Q Consensus 73 ~fPHlNy~i~g~k 85 (105)
.||||.|+|+|.|
T Consensus 182 ~~~~~~y~~~g~~ 194 (801)
T 8I9Z_CC 182 SYPHIGYDINGKK 194 (801)
T ss_pred cCCccccccCCcc
No 6
>PF13788.10 ; DUF4180 ; Domain of unknown function (DUF4180)
Probab=41.29 E-value=30 Score=21.97 Aligned_cols=11 Identities=9% Similarity=-0.012 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred ccCChHHHHHH
Q FD01848827_026 18 LFNNMNDAKNW 28 (105)
Q Consensus 18 lf~d~n~A~N~ 28 (105)
+|.|..+|++|
T Consensus 100 ~F~~~~~A~~W 110 (111)
T A0A6L7H575_BAC 100 YLATEQQAIEK 110 (111)
T ss_pred EeCCHHHHHHh
No 7
>PF21784.1 ; Bflower ; 4-fold beta flower protein
Probab=41.10 E-value=84 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CceEEECCCCCEEEEEcCCCCeeEecCCCc
Q FD01848827_026 36 GKTRIYDSNGKWIGWQNKAGDSVYWGHGDW 65 (105)
Q Consensus 36 ~~~r~y~~~gkw~GW~n~~Gd~vYW~HgDW 65 (105)
+.-.+||.+|++.||- .++.+|=..|.|
T Consensus 38 ~~~~Vyd~~G~~vG~~--~~g~i~d~~G~~ 65 (121)
T A1ZX69_9BACT/1 38 GFKSIFGMNGEHMGWF--VDGIFFNHQQKV 65 (121)
T ss_pred ceeEEECCCCCEEEEE--ECCEEECCCCCE
No 8
>2Q3L_A Uncharacterized protein; SPOIIAA-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION; HET: MPD, MSE; 2.25A {Shewanella loihica PV-4} SCOP: l.1.1.1, c.13.2.2
Probab=39.68 E-value=36 Score=19.99 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred ccCChHHHHHH
Q FD01848827_026 18 LFNNMNDAKNW 28 (105)
Q Consensus 18 lf~d~n~A~N~ 28 (105)
+|++..+|++|
T Consensus 114 ~f~~~~eA~~W 124 (126)
T 2Q3L_A 114 FFEDKRDALDW 124 (126)
T ss_dssp EESCHHHHHHH
T ss_pred ecCcHHHHHHH
No 9
>4U7A_A Ribosome biogenesis protein ERB1; ribosome biogenesis, WD40, rRNA binding, beta-propeller, protein binding; 1.6A {Saccharomyces cerevisiae}
Probab=39.54 E-value=24 Score=33.23 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cCCceeeeeCCCc
Q FD01848827_026 73 TFPHLNININGEK 85 (105)
Q Consensus 73 ~fPHlNy~i~g~k 85 (105)
.||||.|+|+|.|
T Consensus 186 ~~~higy~~~g~~ 198 (826)
T 4U7A_A 186 EMPHIGYDINGKR 198 (826)
T ss_dssp -------------
T ss_pred cCCcccccCCCCc
No 10
>2OOK_A Hypothetical protein; YP_749275.1, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN; HET: EDO, MSE; 1.8A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=37.98 E-value=36 Score=20.03 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred ccCChHHHHHHHHH
Q FD01848827_026 18 LFNNMNDAKNWAAN 31 (105)
Q Consensus 18 lf~d~n~A~N~~r~ 31 (105)
+|.+..+|+.|.+.
T Consensus 114 ~f~~~~eA~~Wl~~ 127 (127)
T 2OOK_A 114 YFEDEDDALKWLRY 127 (127)
T ss_dssp EESCHHHHHHHHHC
T ss_pred EecCHHHHHHHHhC
No 11
>PF11360.12 ; DUF3110 ; Protein of unknown function (DUF3110)
Probab=36.51 E-value=51 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hccCChHHHHHHHHHH
Q FD01848827_026 17 TLFNNMNDAKNWAANQ 32 (105)
Q Consensus 17 ~lf~d~n~A~N~~r~~ 32 (105)
..|++..||.+||..+
T Consensus 32 laFE~~~DA~rya~~L 47 (89)
T C1MMX9_MICPC/1 32 LAFTTNEDASRYATLL 47 (89)
T ss_pred EEEcCHHHHHHHHHHH
No 12
>5UP1_A EEHEE_rd3_1049; de novo design, mini protein, DE NOVO PROTEIN; NMR {Escherichia coli}
Probab=31.17 E-value=91 Score=22.34 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred ccccCCceeehhccCChHHHHHHHHHH
Q FD01848827_026 6 LTTKKGTTKVDTLFNNMNDAKNWAANQ 32 (105)
Q Consensus 6 ~~tKKg~~K~~~lf~d~n~A~N~~r~~ 32 (105)
++-|.|..|+. |+|+..|+.+|.++
T Consensus 22 ttvklgdikvt--fdnpekakkyaqkl 46 (64)
T 5UP1_A 22 TTVKLGDIKVT--FDNPEKAKKYAQKL 46 (64)
T ss_dssp EEEECSSCEEE--ESCHHHHHHHHHHH
T ss_pred eeEEeCcEEEE--eCCHHHHHHHHHHH
No 13
>8ESR_m Ribosome biogenesis protein erb1; 60S Ribosome, nucleophosmin, ribosome biogenesis, fkbp, RIBOSOME;{Schizosaccharomyces pombe}
Probab=30.36 E-value=42 Score=30.37 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred cCCceeeeeCCCc
Q FD01848827_026 73 TFPHLNININGEK 85 (105)
Q Consensus 73 ~fPHlNy~i~g~k 85 (105)
.||||.|+++|.|
T Consensus 126 ~~~h~gy~~~g~~ 138 (740)
T 8ESR_m 126 ENLYINYDIDGKK 138 (740)
T ss_pred CCCcccccCCCCc
No 14
>PF21785.1 ; Bflower_2 ; 5-fold beta-flower protein
Probab=29.14 E-value=1.9e+02 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred ceEEECCCCCEEEEEcCCCCeeE
Q FD01848827_026 37 KTRIYDSNGKWIGWQNKAGDSVY 59 (105)
Q Consensus 37 ~~r~y~~~gkw~GW~n~~Gd~vY 59 (105)
++++||++|+..+-..+.| .+|
T Consensus 1 ~~~i~d~~g~~~~~i~~~G-~v~ 22 (116)
T A0A1G6CB15_9FL 1 TQEIQAKNHNISGYIKNDG-TIH 22 (116)
T ss_pred CeEEECCCCCEEEEECCCC-EEE
No 15
>PF10386.13 ; DUF2441 ; Protein of unknown function (DUF2441)
Probab=27.66 E-value=96 Score=22.91 Aligned_cols=25 Identities=4% Similarity=0.274 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred hccCChHHHHHHHHHHhcCCceEEE
Q FD01848827_026 17 TLFNNMNDAKNWAANQLGLGKTRIY 41 (105)
Q Consensus 17 ~lf~d~n~A~N~~r~~lG~~~~r~y 41 (105)
|+|++..+|+.|+...-+.+...++
T Consensus 78 F~~~s~e~A~~~~~~~~~~~~~~~~ 102 (140)
T R6M9U9_9CLOT/2 78 YVLKDKDEVNGWLEIFKRINRKPLQ 102 (140)
T ss_pred EEeCCHHHHHHHHHHhhhcCCCCeE
No 16
>7T4X_C Potassium channel AKT1; K+ channel, ion channel, hyperpolarization-activated channel, voltage-gated channel, MEMBRANE PROTEIN; HET: PTY; 2.8A {Arabidopsis thaliana}
Probab=27.37 E-value=3.4e+02 Score=23.72 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred ccccccccCCceeehhccCChHHHHHHHHHHhcCCceEEECCC-CCEEEEEcC--CCCeeEecCC
Q FD01848827_026 2 EIERLTTKKGTTKVDTLFNNMNDAKNWAANQLGLGKTRIYDSN-GKWIGWQNK--AGDSVYWGHG 63 (105)
Q Consensus 2 ~I~e~~tKKg~~K~~~lf~d~n~A~N~~r~~lG~~~~r~y~~~-gkw~GW~n~--~Gd~vYW~Hg 63 (105)
.|....++.-.-|+-.+-.+..+-+--|.+-+|..++++|+++ |-.+-=... +||.+|-.-|
T Consensus 792 ~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (857)
T 7T4X_C 792 TISCAEKDDIAGKLVLLPGSFKELLELGSNKFGIVATKVMNKDNNAEIDDVDVIRDGDHLIFATD 856 (857)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEeCCccCCCCeEEEecCCHHHHHHHHHHHhCcceeEeecCCCCceeceEEEEecCCEEEEecC
No 17
>5UJP_B Glyoxalase/bleomycin resisance protein/dioxygenase; Natural product enzyme, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Enzyme Discovery for Natural; HET: MES, MSE; 1.42A {Streptomyces sp. CB03234}
Probab=26.81 E-value=2.2e+02 Score=16.53 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred CceeehhccCChHHHHHHHHHHhcCCceEEECCCCCEEEEEcCCCCeeEecCCCccCCcccccCCceeeeeCC
Q FD01848827_026 11 GTTKVDTLFNNMNDAKNWAANQLGLGKTRIYDSNGKWIGWQNKAGDSVYWGHGDWGQGVGKSTFPHLNINING 83 (105)
Q Consensus 11 g~~K~~~lf~d~n~A~N~~r~~lG~~~~r~y~~~gkw~GW~n~~Gd~vYW~HgDWg~G~G~S~fPHlNy~i~g 83 (105)
+...+.+.-.|..+|..|-...||..........+...-.-...+..+.-.--........+.+.|+.+.++.
T Consensus 1 ~~~~i~~~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 73 (114)
T 5UJP_B 1 SNALFSVPVSDQEKAKDFYVETVGFDLLADQPGVHGRWLQVAPKGADTSLVLVDWFPTMPPGSLRGLLLRTDD 73 (114)
T ss_dssp CCEEEEEECSCHHHHHCCCCCCSCCEEEEEEECSSSEEEEEECTTCSEEEEEECCCTTSCTTCCCCEEEECSC
T ss_pred CceEEEEEeCCHHHHHHHHHhccCcEEEeCCCCCCceeEEEecCCCceEEEEEecCCCCCCCCceeEEEEhhh
No 18
>PF11834.12 ; KHA ; KHA, dimerisation domain of potassium ion channel
Probab=26.81 E-value=1.9e+02 Score=15.71 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred eehhccCChHHHHHHHHHHhcCCceEEECCCCCEE
Q FD01848827_026 14 KVDTLFNNMNDAKNWAANQLGLGKTRIYDSNGKWI 48 (105)
Q Consensus 14 K~~~lf~d~n~A~N~~r~~lG~~~~r~y~~~gkw~ 48 (105)
++-.+-.+..+-++-|...++....++|+++|-.+
T Consensus 16 ~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~g~~i 50 (64)
T M1CU63_SOLTU/3 16 RAVLLPDSINELLDIGAEKFGVSLAKVLTEDGALI 50 (64)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCccEEEcCCCCEe
No 19
>PF04800.16 ; NDUS4 ; NADH dehydrogenase ubiquinone Fe-S protein 4
Probab=26.59 E-value=85 Score=21.67 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred ehhccCChHHHHHHHHHH
Q FD01848827_026 15 VDTLFNNMNDAKNWAANQ 32 (105)
Q Consensus 15 ~~~lf~d~n~A~N~~r~~ 32 (105)
+.+-|+++.+|..||.+.
T Consensus 50 ~~l~F~s~e~Ai~fa~~~ 67 (96)
T A7HXF0_PARL1/1 50 VLLRFDSKEEAVAYAEKH 67 (96)
T ss_pred eEEEeCCHHHHHHHHHHc
No 20
>PF08145.16 ; BOP1NT ; BOP1NT (NUC169) domain
Probab=25.76 E-value=67 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred cCCceeeeeCCCc
Q FD01848827_026 73 TFPHLNININGEK 85 (105)
Q Consensus 73 ~fPHlNy~i~g~k 85 (105)
.|+||.|+++|.+
T Consensus 3 d~~HiGYd~dGkk 15 (259)
T F0ZHH5_DICPU/2 3 DFDHIGYDVDGNK 15 (259)
T ss_pred cCCceeeCCCCCe
No 21
>PF08350.14 ; FilR1_middle ; Methanogenesis regulatory protein FilR1, middle domain
Probab=24.64 E-value=1e+02 Score=18.46 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hccCChHHHHHHHHHHh
Q FD01848827_026 17 TLFNNMNDAKNWAANQL 33 (105)
Q Consensus 17 ~lf~d~n~A~N~~r~~l 33 (105)
.|..+-.+|..||+.+.
T Consensus 37 ~l~s~~~~~~~Wa~~lf 53 (62)
T Q8THW4_METAC/1 37 FIMSFEPAALRWGQELF 53 (62)
T ss_pred eeEECCHHHHHHHHHHH
No 22
>2LJU_A Putative oxidoreductase; oxidoreductase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID; NMR {Ehrlichia chaffeensis}
Probab=21.84 E-value=1.1e+02 Score=21.47 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred ehhccCChHHHHHHHHHH
Q FD01848827_026 15 VDTLFNNMNDAKNWAANQ 32 (105)
Q Consensus 15 ~~~lf~d~n~A~N~~r~~ 32 (105)
+.+-|+++.+|..||.+.
T Consensus 62 ~~l~F~s~e~Ai~fae~~ 79 (108)
T 2LJU_A 62 VCLSFTTRELAIAYAVAH 79 (108)
T ss_dssp SCEEESSHHHHHHHHHHT
T ss_pred eEEEeCCHHHHHHHHHHC
No 23
>PF04981.17 ; NMD3 ; NMD3 family
Probab=21.60 E-value=2.7e+02 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ehhccCChHHHHHHHHHHhcCCceEEECCCCCEEEEEcCCCCeeE
Q FD01848827_026 15 VDTLFNNMNDAKNWAANQLGLGKTRIYDSNGKWIGWQNKAGDSVY 59 (105)
Q Consensus 15 ~~~lf~d~n~A~N~~r~~lG~~~~r~y~~~gkw~GW~n~~Gd~vY 59 (105)
+|+.|.+...|...|+.+.-.-.-++ ...-++.|+....|..+|
T Consensus 178 ~D~~~~s~~~A~~ia~~l~~~~~~~~-k~S~kl~g~d~~~Gk~~y 221 (229)
T A0A1X7T227_AMP 178 LDFYYAQKQDARKMVEFIMSVVPSKY-KTSQELISHDVHSNTYNY 221 (229)
T ss_pred eEEEeCCHHHHHHHHHHHHHHCCCce-eeceeeEEEeCCCCeEEE
No 24
>PF11964.12 ; SpoIIAA-like ; SpoIIAA-like
Probab=21.57 E-value=80 Score=17.78 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred cc--CChHHHHHHHH
Q FD01848827_026 18 LF--NNMNDAKNWAA 30 (105)
Q Consensus 18 lf--~d~n~A~N~~r 30 (105)
+| .+..+|+.|.+
T Consensus 92 ~f~~~~~~eA~~wl~ 106 (106)
T K9XV53_STAC7/1 92 YFKSNELEEAWHWLE 106 (106)
T ss_pred ecChhhHHHHHHHhC
No 25
>PF05593.18 ; RHS_repeat ; RHS Repeat
Probab=20.03 E-value=2.5e+02 Score=16.26 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred ECCCCCEEEE--EcCCCCeeE
Q FD01848827_026 41 YDSNGKWIGW--QNKAGDSVY 59 (105)
Q Consensus 41 y~~~gkw~GW--~n~~Gd~vY 59 (105)
||++|++... ..+.|.. |
T Consensus 1 Yd~~g~l~~~~~~~~~g~~-y 20 (41)
T Q8XWK4_RALSO/3 1 YNANGMLSTVIWTDNTTRQ-Y 20 (41)
T ss_pred CCCCCCEEEEEEECCCCCE-E