Query WP_029789863.1/2180-2277 WP_029789863.1 RHS repeat-associated core domain-containing protein [Vibrio harveyi]
Match_columns 88
No_of_seqs 116 out of 525
Neff 6.87218
Searched_HMMs 86581
Date Mon Feb 26 20:54:12 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/5142420.hhr -oa3m ../results/5142420.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14436.10 ; EndoU_bacteria ; 98.0 1.3E-05 1.5E-10 52.5 4.1 50 22-85 80-142 (143)
2 PF04365.17 ; BrnT_toxin ; Ribo 95.6 0.33 3.8E-06 28.3 7.5 51 36-86 17-76 (79)
3 PF18810.5 ; PBECR2 ; phage-Bar 94.6 0.58 6.7E-06 30.3 7.0 53 33-85 45-108 (132)
4 3U97_A Ribonuclease toxin BrnT 93.8 1.4 1.6E-05 28.6 7.5 50 36-86 54-108 (114)
5 PF14076.10 ; DUF4258 ; Domain 87.8 5.4 6.2E-05 22.4 6.9 48 36-83 16-74 (75)
6 PF15534.10 ; Ntox35 ; Bacteria 87.2 8 9.3E-05 23.8 7.5 50 31-83 23-75 (76)
7 7VD7_A toxin; Toxin-Antitoxin 87.1 7.5 8.6E-05 23.3 6.9 51 36-86 22-84 (94)
8 3NZL_A DNA-binding protein SAT 82.4 2.1 2.5E-05 27.4 2.0 22 27-48 14-35 (83)
9 PF16557.9 ; CUTL ; CUT1-like D 81.9 2 2.4E-05 26.6 1.7 22 27-48 6-27 (72)
10 PF12997.11 ; DUF3881 ; Domain 79.8 26 0.0003 26.4 7.2 58 26-84 6-74 (285)
11 PF19215.4 ; CoV_NSP15_C ; Coro 73.1 16 0.00018 26.0 4.2 22 63-84 132-154 (155)
12 5YRX_A Nucleoid-associated pro 58.3 45 0.00052 22.2 4.1 55 25-81 6-60 (139)
13 3O2I_B Uncharacterized protein 48.8 44 0.00051 22.8 2.8 23 26-48 100-122 (125)
14 3CTR_A Poly(A)-specific ribonu 45.3 39 0.00046 21.5 2.2 16 26-41 13-28 (101)
15 2C1W_C ENDOU PROTEIN; NUCLEASE 45.3 81 0.00093 24.2 4.1 23 63-85 259-282 (292)
16 8ARV_B Bifunctional diguanylat 44.4 1.6E+02 0.0019 20.4 5.6 66 12-81 1-68 (275)
17 PF20786.1 ; DUF6840 ; Family o 44.2 39 0.00045 22.0 1.9 19 26-44 74-92 (92)
18 PF13037.10 ; DUF3898 ; Domain 43.8 50 0.00058 21.7 2.4 17 28-44 4-20 (90)
19 PF16137.9 ; DUF4845 ; Domain o 43.0 48 0.00056 19.8 2.2 22 26-47 3-24 (85)
20 1OTR_A protein Cue2; PROTEIN-P 41.5 34 0.00039 18.8 1.3 18 23-41 12-29 (49)
21 2JV8_A Uncharacterized protein 39.6 1E+02 0.0012 19.0 3.3 21 63-83 22-43 (73)
22 PF12636.11 ; DUF3781 ; Protein 38.6 1.5E+02 0.0018 18.3 5.2 47 31-83 24-71 (71)
23 PF15631.10 ; Imm-NTF2-2 ; NTF2 36.9 1.7E+02 0.002 18.5 4.6 39 44-83 21-80 (83)
24 7O6N_C Protein pid-3; ERH-2 PI 36.6 1.1E+02 0.0012 16.8 2.7 25 19-43 1-26 (39)
25 PF20716.1 ; DUF6828 ; Domain o 35.1 74 0.00085 21.4 2.2 20 29-48 35-54 (99)
26 PF07380.15 ; Pneumo_M2 ; Pneum 33.7 75 0.00087 20.7 2.0 15 30-44 60-74 (89)
27 PF18780.5 ; HNH_repeat ; Homin 33.2 1E+02 0.0012 15.6 2.4 15 30-44 1-15 (54)
28 PF20735.1 ; Lambda_ea8_5 ; Bac 32.0 69 0.00079 20.2 1.7 24 22-45 41-70 (86)
29 PF21796.1 ; Cac1_C ; Chromatin 31.9 74 0.00086 18.3 1.7 21 23-44 23-43 (56)
30 PF10281.13 ; Ish1 ; Putative n 30.6 1.1E+02 0.0013 15.4 2.2 14 28-41 2-15 (38)
31 6WRW_C Computationally designe 30.1 1.7E+02 0.002 18.6 3.1 48 31-83 1-50 (88)
32 PF19394.3 ; DUF5969 ; Family o 28.7 2.8E+02 0.0033 18.4 7.7 52 31-82 31-86 (90)
33 4S1T_B Uridylate-specific endo 28.3 1.9E+02 0.0022 23.7 3.8 22 63-84 324-346 (349)
34 PF02198.20 ; SAM_PNT ; Sterile 27.3 1.2E+02 0.0014 16.9 2.1 18 27-44 17-34 (85)
35 PF19848.3 ; DUF6323 ; Family o 26.6 1E+02 0.0012 21.2 1.9 24 23-46 78-101 (127)
36 PF17412.6 ; VraX ; Family of u 26.3 1.7E+02 0.0019 17.4 2.5 20 26-45 29-48 (55)
37 5YVD_A Nsp15; MERS-CoV, anti-v 26.2 2E+02 0.0023 23.4 3.7 22 63-84 318-340 (343)
38 6TMG_P ATPTG10; mitochondrial, 25.7 1.2E+02 0.0014 21.5 2.2 19 29-47 52-70 (138)
39 5SBF_A Uridylate-specific endo 25.7 2.3E+02 0.0026 23.3 3.8 22 63-84 324-346 (349)
40 PF19542.3 ; DUF6066 ; Family o 25.4 91 0.0011 23.4 1.6 56 27-86 139-205 (212)
41 6MTZ_A HepC.19480.a.B1; SSGCID 25.4 2.3E+02 0.0026 21.1 3.7 32 11-46 321-355 (355)
42 PF07262.15 ; CdiI ; CDI immuni 25.1 1.8E+02 0.0021 19.3 2.9 34 9-44 120-153 (155)
43 PF07305.16 ; DUF1454 ; Protein 24.9 4.2E+02 0.0048 19.1 6.1 50 28-85 129-179 (185)
44 3JSL_B DNA ligase; DNA ligase, 24.9 3.9E+02 0.0045 20.4 4.9 25 58-83 107-131 (318)
45 7K72_C DNA ligase A; Structura 24.4 3.9E+02 0.0045 20.7 4.8 25 58-83 126-150 (336)
46 2GKP_A hypothetical protein NM 24.3 1.8E+02 0.002 19.8 2.8 33 10-44 132-164 (167)
47 PF20636.1 ; SMN_G2-BD ; Surviv 24.3 1.1E+02 0.0013 12.3 2.2 16 30-45 3-18 (18)
48 PF15002.10 ; ERK-JNK_inhib ; E 23.6 1.4E+02 0.0016 21.7 2.2 21 21-45 71-91 (198)
49 4QQ0_A Adenylate cyclase-like 22.6 4.1E+02 0.0047 20.2 4.6 36 30-65 115-154 (280)
50 4PY9_A Putative exopolyphospha 22.2 2.1E+02 0.0025 20.8 3.0 29 10-44 307-335 (343)
51 PF06236.15 ; MelC1 ; Tyrosinas 22.2 2.2E+02 0.0026 19.3 2.8 21 63-83 61-81 (109)
52 PF05256.16 ; UPF0223 ; Unchara 21.8 1.6E+02 0.0019 19.1 2.0 13 28-40 8-20 (86)
53 4GLW_A DNA ligase; DNA ligase 21.6 5.3E+02 0.0061 19.3 5.0 25 58-83 104-128 (305)
54 3BAC_A DNA ligase; Adenylation 21.2 5.3E+02 0.0061 19.0 6.6 49 31-83 24-72 (270)
55 8CSS_G 28S ribosomal protein S 21.0 1.4E+02 0.0016 24.5 1.9 17 27-43 96-112 (396)
56 PF09133.14 ; SANTA ; SANTA (SA 21.0 75 0.00086 19.5 0.4 7 26-32 83-89 (90)
57 PF08471.14 ; Ribonuc_red_2_N ; 20.8 1.8E+02 0.0021 19.6 2.2 20 25-44 12-31 (117)
58 4Q2J_A DNA-binding protein SAT 20.7 2.1E+02 0.0024 20.8 2.6 26 23-48 111-136 (180)
59 PF09412.14 ; XendoU ; Endoribo 20.3 3.4E+02 0.0039 20.4 3.7 22 63-84 230-256 (256)
60 1SXE_A Transcriptional regulat 20.2 2.1E+02 0.0025 17.1 2.3 18 27-44 27-44 (97)
61 2M7A_A Uncharacterized protein 20.1 2.4E+02 0.0028 18.3 2.6 20 26-45 60-85 (101)
62 8Q84_O DASH complex subunit SP 20.0 2.2E+02 0.0025 22.5 2.8 23 22-44 197-219 (295)
No 1
>PF14436.10 ; EndoU_bacteria ; Bacterial EndoU nuclease
Probab=98.04 E-value=1.3e-05 Score=52.54 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=39.3 Template_Neff=9.600
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECC---EEEEEEEEe---CCe--E---EEEe--Ec
Q WP_029789863.1 22 GKSEFPQGWSDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNG---IDIRVIQER---NGD--I---VSGF--PT 85 (88)
Q Consensus 22 gkt~FP~~Ws~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dG---V~I~V~~~~---~g~--i---~TAy--P~ 85 (88)
..|.||.+|+.++|+++|.++++ . .....+| +.|+++++. +|. | +|+| |+
T Consensus 80 ~st~FP~~ws~~~I~~~i~~a~~------~--------~~~~~~G~~~~~i~~~~~~~~~~g~~~~~~~~t~y~~P~ 142 (143)
T B6INW4_RHOCS/8 80 ESVFFPDRYDEGHLMCALQSAYG------R--------RHRSHDGQWEATLDDGTVVEFRSGQDGALWPVPVYVPPL 142 (143)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHh------h--------ccccCCCceeEEEEEEEecccCCCCccccccccccCCCC
Confidence 45899999999999999999987 1 1126678 888887773 454 9 9999 96
No 2
>PF04365.17 ; BrnT_toxin ; Ribonuclease toxin, BrnT, of type II toxin-antitoxin system
Probab=95.62 E-value=0.33 Score=28.25 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHhCCccceeCCC-----CCeEEEEEEECCEEEEEE-EE-eCC--eEEEEeEcC
Q WP_029789863.1 36 MHEISDIATDPNAIRRNGR-----GGRTITEGTRNGIDIRVI-QE-RNG--DIVSGFPTN 86 (88)
Q Consensus 36 ~~ai~~v~~~P~~~~~~~~-----~g~~~~~g~~dGV~I~V~-~~-~~g--~i~TAyP~~ 86 (88)
.+.+.+++.+|........ +.++...|..+|..+.|+ +. .++ .|+||++..
T Consensus 17 ~~ev~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~gr~l~vv~~~~~~~~~~iisa~~~~ 76 (79)
T B6INL0_RHOCS/5 17 FGDAIPALEDPDRLERIDDRFAYGEERVQTIGAAAGGILFVVTTVNEEETCRILSARRAT 76 (79)
T ss_pred HHHHHHHHhCCCceEEEccccccCCeeEEEEEEeCCeEEEEEEEEecCCEEEEEEeeeCC
No 3
>PF18810.5 ; PBECR2 ; phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2
Probab=94.61 E-value=0.58 Score=30.25 Aligned_cols=53 Identities=8% Similarity=0.097 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHHHHHhCCccceeCCCCCe--------EEEEEEECCEEEEEEEE-eCC--eEEEEeEc
Q WP_029789863.1 33 DKIMHEISDIATDPNAIRRNGRGGR--------TITEGTRNGIDIRVIQE-RNG--DIVSGFPT 85 (88)
Q Consensus 33 ~~I~~ai~~v~~~P~~~~~~~~~g~--------~~~~g~~dGV~I~V~~~-~~g--~i~TAyP~ 85 (88)
...+..+.+++++|+.++....... ..+.+.+++..+.|++. .++ .+.|+||+
T Consensus 45 ~~~~~~l~~~l~~PdeI~~~~~~~~~~~~~~~~~~y~k~~~~~~~~vvv~~~~~~~~v~t~~~~ 108 (132)
T A0A285M2N7_9HY 45 APALKQLAEAIMDPDEIWVDWEWHDVRKEWILKRRYLRSAPNLAGLLVFEWSQHGWSATTAYNA 108 (132)
T ss_pred HHHHHHHHHHHhCcceeeeeeeecccCCcEEEEEEEEeEcCCceEEEEEEEeCCeEEEEEEeec
No 4
>3U97_A Ribonuclease toxin BrnT; RNAse Sa/RelE small ribonuclease fold, ribonuclease, BrnA, HYDROLASE; HET: MSE; 1.102A {Brucella abortus}
Probab=93.79 E-value=1.4 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHhCCccceeCCCCCeEEEEEEECC-EEEEEEEE-eC-C--eEEEEeEcC
Q WP_029789863.1 36 MHEISDIATDPNAIRRNGRGGRTITEGTRNG-IDIRVIQE-RN-G--DIVSGFPTN 86 (88)
Q Consensus 36 ~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dG-V~I~V~~~-~~-g--~i~TAyP~~ 86 (88)
.+.+.+++.+|........ +++...|..++ ..+.|++. .+ + .|+|||+..
T Consensus 54 ~~ev~~~~~~~~~~~~d~e-~R~~~iG~~~~gr~l~vv~~~~~~~~~riITa~~a~ 108 (114)
T 3U97_A 54 FADLHFEFFLSAKVFPTKA-DRLMAIGEFNGLIIIAVIFKPVGSEALSVISMRSAS 108 (114)
T ss_dssp GGGCCHHHHHTSEEEEEET-TEEEEEEEETTTEEEEEEEEEETTTEEEEEEEEECC
T ss_pred HHHHHHHhhcccEEEeCCC-ceEEEEEEECCeEEEEEEEEEcCCCeEEEEEceeCC
No 5
>PF14076.10 ; DUF4258 ; Domain of unknown function (DUF4258)
Probab=87.75 E-value=5.4 Score=22.36 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHHhCCccceeCCC---CCeEEEEEE-ECCEEEEEEEE--eCC-----eEEEEe
Q WP_029789863.1 36 MHEISDIATDPNAIRRNGR---GGRTITEGT-RNGIDIRVIQE--RNG-----DIVSGF 83 (88)
Q Consensus 36 ~~ai~~v~~~P~~~~~~~~---~g~~~~~g~-~dGV~I~V~~~--~~g-----~i~TAy 83 (88)
.+.|.+++.+|........ ...+...+. .+|-.+.|++. .++ .|+|||
T Consensus 16 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~viT~~ 74 (75)
T D5BWQ5_NITHN/3 16 TRQVLDVLSKGKIIEGPVRGTTGDWECTLERFVAGDNVVVVVAIETDSAGQPVIIVTTY 74 (75)
T ss_pred HHHHHHHHhcCceeecccCCCCCCEEEEEEEcCCCCEEEEEEEEEeCCCCCeEEEEEEe
No 6
>PF15534.10 ; Ntox35 ; Bacterial toxin 35
Probab=87.19 E-value=8 Score=23.78 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred CHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECCEEEEEEEE-eCC--eEEEEe
Q WP_029789863.1 31 SDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNGIDIRVIQE-RNG--DIVSGF 83 (88)
Q Consensus 31 s~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V~~~-~~g--~i~TAy 83 (88)
+-++|...+..+++........+. +.....+.|..|.|.+. .+| .|..||
T Consensus 23 ~w~~v~~~i~~vm~~G~~~~y~~~---~~k~~~~~G~~v~Vt~~~~~G~i~is~aW 75 (76)
T M1MGK3_9CLOT/7 23 SRKEIYDNFVNIINENKSKLIQGN---NQLRTVINGYEVEIKAFVKDGKVASIDGQ 75 (76)
T ss_pred chHHHHHHHHHHHhcCCceeeCce---eEEEEEECCEEEEEEEEeeCCEEEEEecc
No 7
>7VD7_A toxin; Toxin-Antitoxin complex Ribonuclease, TOXIN, TOXIN-ANTITOXIN complex; 1.43A {Salmonella typhimurium}
Probab=87.05 E-value=7.5 Score=23.28 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHhCCccceeCCC----CCeEEEEEEECC-EEEEEEEE-eC----C--eEEEEeEcC
Q WP_029789863.1 36 MHEISDIATDPNAIRRNGR----GGRTITEGTRNG-IDIRVIQE-RN----G--DIVSGFPTN 86 (88)
Q Consensus 36 ~~ai~~v~~~P~~~~~~~~----~g~~~~~g~~dG-V~I~V~~~-~~----g--~i~TAyP~~ 86 (88)
.+.+.+++.+|........ +.++...|..++ ..+.|++. .+ + .|+||++..
T Consensus 22 ~~ev~~~~~~~~~~~~~~~~~~~~~r~~~iG~~~~gr~l~vv~~~~~~~~~~~~~iita~~a~ 84 (94)
T 7VD7_A 22 FEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFDVIRIISARKAD 84 (94)
T ss_dssp HHHHGGGGGSTTCEEEEEEEETTEEEEEEEEEETTTEEEEEEEEEEECSSCEEEEEEEEEECC
T ss_pred HHHHHHHhCCCcceeecchhccCChheEEEEEEcCeEEEEEEEEeccccCCcEEEEEEceeCC
No 8
>3NZL_A DNA-binding protein SATB1; alpha-helical domain, Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSCRIPTION; HET: MSE; 1.199A {Homo sapiens}
Probab=82.42 E-value=2.1 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q WP_029789863.1 27 PQGWSDDKIMHEISDIATDPNA 48 (88)
Q Consensus 27 P~~Ws~~~I~~ai~~v~~~P~~ 48 (88)
|+.|+...|.+|+.+++++.+.
T Consensus 14 pEqWsh~TVRnalkeLLkemnQ 35 (83)
T 3NZL_A 14 PEQWSHTTVRNALKDLLKDMNQ 35 (83)
T ss_dssp GGGCCHHHHHHHHHHHTTTSCH
T ss_pred hhHccHHHHHHHHHHHHHhCCh
No 9
>PF16557.9 ; CUTL ; CUT1-like DNA-binding domain of SATB
Probab=81.93 E-value=2 Score=26.61 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred CCCCCHHHHHHHHHHHHhCCcc
Q WP_029789863.1 27 PQGWSDDKIMHEISDIATDPNA 48 (88)
Q Consensus 27 P~~Ws~~~I~~ai~~v~~~P~~ 48 (88)
|+.|+...|.+|+.+++++.+.
T Consensus 6 peqWs~~tVR~al~~LLk~~nq 27 (72)
T I3KDM2_ORENI/1 6 SDQWTHATVRNALKELLRETNQ 27 (72)
T ss_pred hhHhhHHHHHHHHHHHHHhcCh
No 10
>PF12997.11 ; DUF3881 ; Domain of unknown function, E. rectale Gene description (DUF3881)
Probab=79.79 E-value=26 Score=26.42 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCCCCCHHHHHHHHHHHHhCCccceeCC-----CCCeE----EEEEEECCEEEEEEEEeCCe--EEEEeE
Q WP_029789863.1 26 FPQGWSDDKIMHEISDIATDPNAIRRNG-----RGGRT----ITEGTRNGIDIRVIQERNGD--IVSGFP 84 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~v~~~P~~~~~~~-----~~g~~----~~~g~~dGV~I~V~~~~~g~--i~TAyP 84 (88)
|+..=+.+++.+.+.+++.++....... . +.+ ...+.-.|+.+.+.++.+|. +.+.||
T Consensus 6 f~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~P 74 (285)
T R5C937_9FIRM/1 6 FSKPPKRDEISRLIERGISNPSHRAYTTDDHDEN-ALLAQFDIELGEDFGIAVCGRFDEGDQFYTEYLYP 74 (285)
T ss_pred CCCCCCHHHHHHHHHHHHhCCccceeccCCCccC-cEEEEEEEEEcCCceEEEEEEEcCCCeEEEEEEEE
No 11
>PF19215.4 ; CoV_NSP15_C ; Coronavirus replicase NSP15, uridylate-specific endoribonuclease
Probab=73.06 E-value=16 Score=25.96 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred EECCEEEEEEEE-eCCeEEEEeE
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGFP 84 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAyP 84 (88)
.+|+..++..+= .+|.|.||||
T Consensus 132 ~ID~~~v~iM~W~~dg~I~TaYp 154 (155)
T B1PHK0_9ALPC/6 132 IVDCKVYRWMLWCKDHKVQTFYP 154 (155)
T ss_pred EECCEEEEEEEEEeCCeEEeeee
No 12
>5YRX_A Nucleoid-associated protein Rv3716c; MtbRv3716, DNA binding, metal ion, DNA BINDING PROTEIN; HET: EDO; 1.9A {Mycobacterium tuberculosis H37Rv}
Probab=58.33 E-value=45 Score=22.16 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECCEEEEEEEEeCCeEEE
Q WP_029789863.1 25 EFPQGWSDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNGIDIRVIQERNGDIVS 81 (88)
Q Consensus 25 ~FP~~Ws~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V~~~~~g~i~T 81 (88)
+|+..+.-.++++.+.++.+.=......-. .....++..+-.|+|.++.+|.|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~s~~~~V~V~v~g~g~l~~ 60 (139)
T 5YRX_A 6 HMQPGGDMSALLAQAQQMQQKLLEAQQQLA--NSEVHGQAGGGLVKVVVKGSGEVIG 60 (139)
T ss_dssp ----------------------CHHHHTTT--TCEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccCcCCCHHHHHHHHHHHHHHHHHHHHHHh--cCEEEEEeCCCeEEEEEeCCCEEEE
No 13
>3O2I_B Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, Unknown function; HET: MSE; 2.197A {Leptospirillum rubarum}
Probab=48.76 E-value=44 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=0.0 Template_Neff=1.500
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcc
Q WP_029789863.1 26 FPQGWSDDKIMHEISDIATDPNA 48 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~v~~~P~~ 48 (88)
||.+|+..++...|.+.+..-.+
T Consensus 100 fPge~~Kn~Vk~ri~~~LgkDRS 122 (125)
T 3O2I_B 100 FPGELSKTEVRRRINAFLGKDRS 122 (125)
T ss_dssp EETTCCHHHHHHHHHHHHTTCC-
T ss_pred CCCccCHHHHHHHHHHHhCCccc
No 14
>3CTR_A Poly(A)-specific ribonuclease PARN; PARN, Protein-RNA-complex, m7G-cap, m7GTP, RNA recognition motif, RRM, Exonuclease, Hydrolase, Magnesium, Metal-binding, Nonsense-mediated mRNA decay, Nuclease; HET: MGP; 2.1A {Homo sapiens}
Probab=45.31 E-value=39 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCCCCHHHHHHHHHH
Q WP_029789863.1 26 FPQGWSDDKIMHEISD 41 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~ 41 (88)
||++|...+|......
T Consensus 13 fp~~~kt~dl~~~f~~ 28 (101)
T 3CTR_A 13 FPKEWKTSDLYQLFSA 28 (101)
T ss_dssp CCTTCCHHHHHHHTTT
T ss_pred cCccCCHHHHHHHHHh
No 15
>2C1W_C ENDOU PROTEIN; NUCLEASE, SNORNA, ENDORIBONUCLEASE, SPLICING INDEPENDENT PROCESSING; HET: PO4; 2.2A {XENOPUS LAEVIS} SCOP: d.294.1.1
Probab=45.30 E-value=81 Score=24.18 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred EECCEEEEEEEE-eCCeEEEEeEc
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGFPT 85 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAyP~ 85 (88)
.++|..+.++.. .+..|.||||+
T Consensus 259 ~l~~~~~~i~~~~~~~~i~tayp~ 282 (292)
T 2C1W_C 259 RLEEYELQIVVNRHGRYIGTAYPV 282 (292)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEE
T ss_pred EeCCEEEEEEEEeCCCEEEeeEEe
No 16
>8ARV_B Bifunctional diguanylate cyclase/phosphodiesterase; EAL domain, PDE, phosphodiesterase, BifA, Pseudomonas aeruginosa, c-di-GMP, HYDROLASE; 1.9A {Pseudomonas aeruginosa PAO1}
Probab=44.38 E-value=1.6e+02 Score=20.36 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCccceeCCCCCeEE-EEEEECCEEEEEEEE-eCCeEEE
Q WP_029789863.1 12 GGHRPGTGKPGKSEFPQGWSDDKIMHEISDIATDPNAIRRNGRGGRTI-TEGTRNGIDIRVIQE-RNGDIVS 81 (88)
Q Consensus 12 gGH~~g~g~~gkt~FP~~Ws~~~I~~ai~~v~~~P~~~~~~~~~g~~~-~~g~~dGV~I~V~~~-~~g~i~T 81 (88)
|||++.. ..-...++.|..+++.+.+...+++-........ .+. ..+.+.|.++...+. .++...+
T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~qP--i~~~~~~~~~~~e~~~~~~~~~~~~~~ 68 (275)
T 8ARV_B 1 MGSSHHH--HHHSSGLVPRGSHELEKDLRDALQRHELHLVYQP--QVDYRDHRVVGVEALLRWQHPLHGFVP 68 (275)
T ss_dssp ----------------------CHHHHHHTTTTTTCEEEEEEE--EEETTTTEEEEEEEEEEEEETTTEEEC
T ss_pred CCCCccc--cCCCcCCCCCChhHHHHHHHHHHHcCCeeEEEEe--EEECCCCeEEEEEEEEEeeCCCCceeC
No 17
>PF20786.1 ; DUF6840 ; Family of unknown function (DUF6840)
Probab=44.16 E-value=39 Score=22.01 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=0.0 Template_Neff=1.700
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 26 FPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~v~~ 44 (88)
||.+|+..++...|.+.+.
T Consensus 74 fPge~~Kn~V~~ri~~~Lg 92 (92)
T C6I0U1_9BACT/1 74 YPAEWSKNKVQGLLQDLLN 92 (92)
T ss_pred cCchhchhHHHHHHHHHhC
No 18
>PF13037.10 ; DUF3898 ; Domain of unknown function (DUF3898)
Probab=43.77 E-value=50 Score=21.74 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred CCCCHHHHHHHHHHHHh
Q WP_029789863.1 28 QGWSDDKIMHEISDIAT 44 (88)
Q Consensus 28 ~~Ws~~~I~~ai~~v~~ 44 (88)
+.|+.+++++|..++.+
T Consensus 4 E~w~~eqV~EA~~~ivE 20 (90)
T Q81AM7_BACCR/2 4 EQFSTEEVMEATAQIVE 20 (90)
T ss_pred ccCCHHHHHHHHHHHHh
No 19
>PF16137.9 ; DUF4845 ; Domain of unknown function (DUF4845)
Probab=43.04 E-value=48 Score=19.81 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCCCCCHHHHHHHHHHHHhCCc
Q WP_029789863.1 26 FPQGWSDDKIMHEISDIATDPN 47 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~v~~~P~ 47 (88)
+|.-|+.-++.+++.++++.+.
T Consensus 3 ~P~y~~~~~~~~~~~~~~~~~~ 24 (85)
T S6BSQ6_9GAMM/3 3 VPTYIENFAIKEVLANVAQDRG 24 (85)
T ss_pred cccchhhHHHHHHHHHHHhccc
No 20
>1OTR_A protein Cue2; PROTEIN-PROTEIN COMPLEX, CELL CYCLE; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=41.51 E-value=34 Score=18.83 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q WP_029789863.1 23 KSEFPQGWSDDKIMHEISD 41 (88)
Q Consensus 23 kt~FP~~Ws~~~I~~ai~~ 41 (88)
+..||. |+.+.|..++..
T Consensus 12 ~~mFP~-~~~~~i~~~L~~ 29 (49)
T 1OTR_A 12 MDMFPA-ISKSKLQVHLLE 29 (49)
T ss_dssp HHHCSS-SCHHHHHHHHHH
T ss_pred HHHCCC-CCHHHHHHHHHH
No 21
>2JV8_A Uncharacterized protein NE1242; solution structure, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; NMR {Nitrosomonas europaea ATCC 19718}
Probab=39.61 E-value=1e+02 Score=19.04 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred EECCEEEEEEEE-eCCeEEEEe
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGF 83 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAy 83 (88)
.+||..|.|... .+|...|+.
T Consensus 22 ~IDG~~l~v~~~~~~G~y~s~~ 43 (73)
T 2JV8_A 22 TINGKEISYVHDAVKNKWSSRY 43 (73)
T ss_dssp EETTEECCCCCCSSSCCCCCTT
T ss_pred EECCEEeeEEEeCCCCeEEeCc
No 22
>PF12636.11 ; DUF3781 ; Protein of unknown function (DUF3781)
Probab=38.58 E-value=1.5e+02 Score=18.30 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CHHHHHHHHHHHHhCCcc-ceeCCCCCeEEEEEEECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 31 SDDKIMHEISDIATDPNA-IRRNGRGGRTITEGTRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 31 s~~~I~~ai~~v~~~P~~-~~~~~~~g~~~~~g~~dGV~I~V~~~~~g~i~TAy 83 (88)
++ ++++-+..++.+|+. ....|. .|.+. .+++.|.|--. +-.|+||.
T Consensus 24 ~~-div~~~k~~I~~~~~~i~rkGK--N~Yv~--~~~i~iTiNa~-s~~iITah 71 (71)
T D3DZN9_METRM/4 24 DV-DPVEYCILKIKDKDAVIEEKGK--NYYVT--VDDCIITVNKH-SFTIITAH 71 (71)
T ss_pred CC-CHHHHHHHHHhcCCCeEEEcCc--cEEEe--eCCEEEEEecC-CceEEEeC
No 23
>PF15631.10 ; Imm-NTF2-2 ; NTF2 fold immunity protein
Probab=36.92 E-value=1.7e+02 Score=18.47 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred hCCccceeCCCCCeEEEEEEECCEEE--------------------EEEEE-eCCeEEEEe
Q WP_029789863.1 44 TDPNAIRRNGRGGRTITEGTRNGIDI--------------------RVIQE-RNGDIVSGF 83 (88)
Q Consensus 44 ~~P~~~~~~~~~g~~~~~g~~dGV~I--------------------~V~~~-~~g~i~TAy 83 (88)
+.|-.+...++ ..|.+.|+...... .+.++ .||+|++-+
T Consensus 21 q~Pf~v~~~~d-~~W~V~Gs~~~~~~~~~~~~~~~~~~~~~~gG~~~i~I~k~dG~Il~~~ 80 (83)
T G8TDE4_NIAKG/4 21 EKPFIARLENN-KVWIVEGTLKGDSVYNSKPNPNSRSIFIVVGGVAHIEIQKSDCKILQVS 80 (83)
T ss_pred cCCEEEEEcCC-CEEEEEeeCCCCcccCCCCCCCCceeeEEeCcEEEEEEecCCCEEEEEE
No 24
>7O6N_C Protein pid-3; ERH-2 PID-3 complex piRNA processing PETISCO, PROTEIN BINDING; 2.17A {Caenorhabditis elegans}
Probab=36.61 E-value=1.1e+02 Score=16.77 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHH
Q WP_029789863.1 19 GKPGKSEFPQG-WSDDKIMHEISDIA 43 (88)
Q Consensus 19 g~~gkt~FP~~-Ws~~~I~~ai~~v~ 43 (88)
|..+|..|... ++.+.|..|+..||
T Consensus 1 G~~~~~~~~~~~f~~~~i~~aV~~VL 26 (39)
T 7O6N_C 1 GPDSMWTFDKVLFNSEDIKDSVFKVL 26 (39)
T ss_pred CCccccccceeeeCHHHHHHHHHHHh
No 25
>PF20716.1 ; DUF6828 ; Domain of unknown function (DUF6828)
Probab=35.06 E-value=74 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.425 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred CCCHHHHHHHHHHHHhCCcc
Q WP_029789863.1 29 GWSDDKIMHEISDIATDPNA 48 (88)
Q Consensus 29 ~Ws~~~I~~ai~~v~~~P~~ 48 (88)
||+|..|+.++..-+..+..
T Consensus 35 SWdD~~V~~aLp~Yl~s~~~ 54 (99)
T A0A1Q9DPK1_SYM 35 SWDDAAVKAALPEYLKSSGE 54 (99)
T ss_pred CCChHHHHHHHHHHHhCCHH
No 26
>PF07380.15 ; Pneumo_M2 ; Pneumovirus M2 protein
Probab=33.74 E-value=75 Score=20.67 Aligned_cols=15 Identities=7% Similarity=0.503 Sum_probs=0.0 Template_Neff=1.800
Q ss_pred CCHHHHHHHHHHHHh
Q WP_029789863.1 30 WSDDKIMHEISDIAT 44 (88)
Q Consensus 30 Ws~~~I~~ai~~v~~ 44 (88)
|+.+++++|+...++
T Consensus 60 WTsq~Lida~q~fLq 74 (89)
T M22_HRSVB/1-89 60 WTPKNLLDATQQFLQ 74 (89)
T ss_pred cCchHHHHHHHHHHH
No 27
>PF18780.5 ; HNH_repeat ; Homing endonuclease associated repeat
Probab=33.20 E-value=1e+02 Score=15.65 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCHHHHHHHHHHHHh
Q WP_029789863.1 30 WSDDKIMHEISDIAT 44 (88)
Q Consensus 30 Ws~~~I~~ai~~v~~ 44 (88)
++++++++++..+++
T Consensus 1 ~t~e~l~~~l~~~~~ 15 (54)
T A0A1I6L2K7_9EU 1 LSRDDIIQEIQRVAA 15 (54)
T ss_pred CCHHHHHHHHHHHHH
No 28
>PF20735.1 ; Lambda_ea8_5 ; Bacteriophage lambda ea8.5-related domain
Probab=31.95 E-value=69 Score=20.16 Aligned_cols=24 Identities=0% Similarity=0.105 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCCCCCC------CCHHHHHHHHHHHHhC
Q WP_029789863.1 22 GKSEFPQG------WSDDKIMHEISDIATD 45 (88)
Q Consensus 22 gkt~FP~~------Ws~~~I~~ai~~v~~~ 45 (88)
+...|+++ ++.+++.++|.+++.+
T Consensus 41 a~~~~~~g~~~~~f~s~~e~~d~Ik~v~~~ 70 (86)
T A0A0K2FIU9_9CA 41 SMKVYKSNEDKSPFCNVREMTDTVQNYYHE 70 (86)
T ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHHH
No 29
>PF21796.1 ; Cac1_C ; Chromatin assembly factor 1 subunit Cac1, C-terminal domain
Probab=31.90 E-value=74 Score=18.26 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 23 KSEFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 23 kt~FP~~Ws~~~I~~ai~~v~~ 44 (88)
+..|| +.+...|.+.|.+++.
T Consensus 23 ~~~fp-~~sK~~Ik~tl~~~A~ 43 (56)
T A0A8H6EC10_ASP 23 KKRFP-KVSKDVLKDTLNSVAI 43 (56)
T ss_pred HHHCC-CCCHHHHHHHHHHHHh
No 30
>PF10281.13 ; Ish1 ; Putative nuclear envelope organisation protein
Probab=30.63 E-value=1.1e+02 Score=15.45 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCCCHHHHHHHHHH
Q WP_029789863.1 28 QGWSDDKIMHEISD 41 (88)
Q Consensus 28 ~~Ws~~~I~~ai~~ 41 (88)
++|+++++...+..
T Consensus 2 ~~Ws~~~L~~wL~~ 15 (38)
T Q75BC7_ASHGO/2 2 SSWPLDSLRSWLEV 15 (38)
T ss_pred CCCCHHHHHHHHHH
No 31
>6WRW_C Computationally designed protein 2DS25.5; Complex, Beta sheet, Receptor, DE NOVO PROTEIN; HET: NAG, MAN, BMA; 2.84A {Homo sapiens}
Probab=30.10 E-value=1.7e+02 Score=18.57 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred CHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECCEEEEEEEE--eCCeEEEEe
Q WP_029789863.1 31 SDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNGIDIRVIQE--RNGDIVSGF 83 (88)
Q Consensus 31 s~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V~~~--~~g~i~TAy 83 (88)
++++|..||.+.++..-+. .. .-...-.+-.|.+.|++. ..|+-+|-|
T Consensus 1 deeeiqkaieellrkgvse---ee--aaiiivqrfnvavvvvvqderqgkhisey 50 (88)
T 6WRW_C 1 DEEEIQKAIEELLRKGVSE---EE--AAIIIVQRFNVAVVVVVQDERQGKHISEY 50 (88)
T ss_dssp CHHHHHHHHHHHHHTTCCH---HH--HHHHHHHHHCCSEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCH---HH--HheEEEeeccEEEEEEEccccccccHHHH
No 32
>PF19394.3 ; DUF5969 ; Family of unknown function (DUF5969)
Probab=28.67 E-value=2.8e+02 Score=18.40 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred CHHHHHHHHHHHHhCCcccee--CCCCCeEEEEEEECCEEEEEEEE--eCCeEEEE
Q WP_029789863.1 31 SDDKIMHEISDIATDPNAIRR--NGRGGRTITEGTRNGIDIRVIQE--RNGDIVSG 82 (88)
Q Consensus 31 s~~~I~~ai~~v~~~P~~~~~--~~~~g~~~~~g~~dGV~I~V~~~--~~g~i~TA 82 (88)
|+-.=...++.++.+|+.... ....+-...++.+.|++.+|-.. .++.+++|
T Consensus 31 S~~RQ~ALlK~v~~D~~tv~~~as~~~g~~~ar~~fRGveFEve~~~~~~~~~I~a 86 (90)
T A0A2W2G0T8_9AC 31 STFYQRTLLKRVVLDPSTLAEDADAGEGITVNRSRYQGVEFELHTRADGADREIVA 86 (90)
T ss_pred CHHHHHHHHHHHhcCccceeeccccCCceeEEEEEEeceEEEEEEEecCcceEEEE
No 33
>4S1T_B Uridylate-specific endoribonuclease; HCoV-229e, endoribonuclease, trimeric nsp15, double mutation, HYDROLASE; HET: PO4; 2.504A {Human coronavirus 229E} SCOP: d.294.1.0, l.1.1.1, c.66.1.0
Probab=28.28 E-value=1.9e+02 Score=23.66 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred EECCEEEEEEEE-eCCeEEEEeE
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGFP 84 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAyP 84 (88)
.+|...++..+= +||.|.|+||
T Consensus 324 ~ID~k~vr~MvW~kd~~v~T~Yp 346 (349)
T 4S1T_B 324 IIDNKPWRWMLWCKDNAVATFYP 346 (349)
T ss_dssp EETTEEEEEEEEEETTEEEEEEE
T ss_pred EECCeEEeEEEEEcCCeeEeeee
No 34
>PF02198.20 ; SAM_PNT ; Sterile alpha motif (SAM)/Pointed domain
Probab=27.33 E-value=1.2e+02 Score=16.88 Aligned_cols=18 Identities=11% Similarity=0.330 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCCCCHHHHHHHHHHHHh
Q WP_029789863.1 27 PQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 27 P~~Ws~~~I~~ai~~v~~ 44 (88)
|..|+.+++...+..+..
T Consensus 17 p~~W~~~~v~~wl~~~~~ 34 (85)
T FLI1_HUMAN/114 17 PTLWTQEHVRQWLEWAIK 34 (85)
T ss_pred hhhCCHHHHHHHHHHHHH
No 35
>PF19848.3 ; DUF6323 ; Family of unknown function (DUF6323)
Probab=26.58 E-value=1e+02 Score=21.18 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCC
Q WP_029789863.1 23 KSEFPQGWSDDKIMHEISDIATDP 46 (88)
Q Consensus 23 kt~FP~~Ws~~~I~~ai~~v~~~P 46 (88)
|.+.+...+|+++++++.+..+.+
T Consensus 78 Kne~~d~isDdeLi~~m~~~f~~~ 101 (127)
T A0A2Y9BLM3_9FI 78 KNATLDRMTDDEVLTFMKEQYETV 101 (127)
T ss_pred HHhcccCCCHHHHHHHHHHHHHhc
No 36
>PF17412.6 ; VraX ; Family of unknown function
Probab=26.29 E-value=1.7e+02 Score=17.43 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCCCCCHHHHHHHHHHHHhC
Q WP_029789863.1 26 FPQGWSDDKIMHEISDIATD 45 (88)
Q Consensus 26 FP~~Ws~~~I~~ai~~v~~~ 45 (88)
||++.++.++...+..+..+
T Consensus 29 ~~~d~s~~ev~~~L~ll~~d 48 (55)
T VRAX_STAEQ/1-5 29 CDETFNKYEIYQLLSLLEND 48 (55)
T ss_pred eCCCCCHHHHHHHHHHHHHH
No 37
>5YVD_A Nsp15; MERS-CoV, anti-viral, endoribonuclease, HYDROLASE; HET: GOL; 2.7A {Middle East respiratory syndrome-related coronavirus} SCOP: d.294.1.0, c.66.1.0
Probab=26.23 E-value=2e+02 Score=23.44 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred EECCEEEEEEEE-eCCeEEEEeE
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGFP 84 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAyP 84 (88)
.+|...++..+= +||.|.|+||
T Consensus 318 ~ID~k~vr~MvW~kd~~v~T~Yp 340 (343)
T 5YVD_A 318 PIDLTMIEFMLWCKDGQVQTFYP 340 (343)
T ss_dssp EETTEEEEEEEEEETTEEEEEEE
T ss_pred EECCceecEEEEEeCCeEEeeeE
No 38
>6TMG_P ATPTG10; mitochondrial, ATP synthase, membrane region, lipids, MEMBRANE PROTEIN; HET: LMT, PEE, PC1, CDL; 2.8A {Toxoplasma gondii (strain ATCC 50853 / GT1)}
Probab=25.74 E-value=1.2e+02 Score=21.54 Aligned_cols=19 Identities=11% Similarity=0.448 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred CCCHHHHHHHHHHHHhCCc
Q WP_029789863.1 29 GWSDDKIMHEISDIATDPN 47 (88)
Q Consensus 29 ~Ws~~~I~~ai~~v~~~P~ 47 (88)
+|+|..|+.++..-+..+.
T Consensus 52 SWdD~~Vl~aLp~YL~s~~ 70 (138)
T 6TMG_P 52 SWDDADVLKALPQYLNCRG 70 (138)
T ss_dssp CCCCHHHHHHHHHHTTCCS
T ss_pred CCCcHHHHHHHHHHhcCCH
No 39
>5SBF_A Uridylate-specific endoribonuclease; SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, nsp15, nendoU, sars-cov-2, sars, covid, covid19, HYDROLASE; HET: CIT; 1.64A {Severe acute respiratory syndrome coronavirus 2}
Probab=25.74 E-value=2.3e+02 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred EECCEEEEEEEE-eCCeEEEEeE
Q WP_029789863.1 63 TRNGIDIRVIQE-RNGDIVSGFP 84 (88)
Q Consensus 63 ~~dGV~I~V~~~-~~g~i~TAyP 84 (88)
.+|...++..+= .+|.|.|+||
T Consensus 324 ~ID~k~vr~MvW~~~~~V~T~Yp 346 (349)
T 5SBF_A 324 TIDYTEISFMLWCKDGHVETFYP 346 (349)
T ss_dssp EETTEEEEEEEEEETTEEEEEEE
T ss_pred EECCeEecEEEEEeCCeeeeeeE
No 40
>PF19542.3 ; DUF6066 ; Family of unknown function (DUF6066)
Probab=25.44 E-value=91 Score=23.45 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred CCCCCHHHHHHHHH------HHHhCCccceeCCCCCeEEEEEEECCEEEEE---EEE--eCCeEEEEeEcC
Q WP_029789863.1 27 PQGWSDDKIMHEIS------DIATDPNAIRRNGRGGRTITEGTRNGIDIRV---IQE--RNGDIVSGFPTN 86 (88)
Q Consensus 27 P~~Ws~~~I~~ai~------~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V---~~~--~~g~i~TAyP~~ 86 (88)
|++|.+.+...... +++=.|...|.... .-.|.++||.+++ .|. .+|+|+-+.|.+
T Consensus 139 p~~~~~~~~~r~~~~~~lR~q~Vfrp~~~W~l~~----kggg~~~GV~~~v~a~rV~~~rtG~vl~~~~~~ 205 (212)
T A0A085WP66_9DE 139 PEGWNGGMFARAFSSKAVRLSVVFTPLDIWSLPK----PGGGKIFGVAARLEAVLVTEGRTGDHLGLWLDG 205 (212)
T ss_pred CCCcccchhhHHhhcCcEEEEEEEeecceeecCC----CCCCceeeEEEEEEEEEEecCCCCcEEEEEecC
No 41
>6MTZ_A HepC.19480.a.B1; SSGCID, Structural Genomics, Helicobacter pylori, uncharacterized protein, Seattle Structural Genomics Center for Infectious Disease, UNKNOWN FUNCTION; HET: IOD, EDO; 2.15A {Helicobacter pylori (strain G27)}
Probab=25.38 E-value=2.3e+02 Score=21.12 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHhCC
Q WP_029789863.1 11 GGGHRPGTGKPGKSEFPQGW---SDDKIMHEISDIATDP 46 (88)
Q Consensus 11 ~gGH~~g~g~~gkt~FP~~W---s~~~I~~ai~~v~~~P 46 (88)
+|||....|. .+|..+ +-+++++.+.+.++++
T Consensus 321 GGGH~~AaG~----~i~~~~~~~~~~~~~~~~~~~i~~~ 355 (355)
T 6MTZ_A 321 GGGHRNASGG----KIDGFRESFNYRDIKEQIEEIFNNA 355 (355)
T ss_dssp CEEETTEEEE----ECTTCCCCSCHHHHHHHHHHHHHTC
T ss_pred CCCCccccCc----cccCCchhcCHHHHHHHHHHHHhcC
No 42
>PF07262.15 ; CdiI ; CDI immunity protein
Probab=25.05 E-value=1.8e+02 Score=19.25 Aligned_cols=34 Identities=6% Similarity=-0.116 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 9 ATGGGHRPGTGKPGKSEFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 9 ~~~gGH~~g~g~~gkt~FP~~Ws~~~I~~ai~~v~~ 44 (88)
...||...- ......+|.+-++++|-++|+++++
T Consensus 120 ~~~~g~~~~--~~~~i~l~~~~~~~eLG~av~~al~ 153 (155)
T Q9K0T5_NEIMB/9 120 VKLEAWDAI--DADDVILSLDNSPEEIGAGLKLALS 153 (155)
T ss_pred CCCCcceeC--CCCeEEEeCCCCHHHHHHHHHHHHh
No 43
>PF07305.16 ; DUF1454 ; Protein of unknown function (DUF1454)
Probab=24.89 E-value=4.2e+02 Score=19.12 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCCHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECCEEEEEEEE-eCCeEEEEeEc
Q WP_029789863.1 28 QGWSDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNGIDIRVIQE-RNGDIVSGFPT 85 (88)
Q Consensus 28 ~~Ws~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V~~~-~~g~i~TAyP~ 85 (88)
++++.+++.+.+.+++.+......... +++|++..+... ..|-..++-|+
T Consensus 129 P~ls~~e~~~~l~dLl~~~~~~~~~s~--------~~g~vkYs~~~s~~~Gl~F~vep~ 179 (185)
T YIIQ_ECOLI/8-1 129 PLMTKTQSQKKLQSLLTAGKNKRYYTE--------TEGALRYVVADNGEKGLTFAVEPI 179 (185)
T ss_pred CCCCHHHHHHHHHHHHHccCCCCceEE--------EECCEEEEEEeCCCceEEEEEEEe
No 44
>3JSL_B DNA ligase; DNA ligase, NAD+-dependent, Staphylococcus aureus, DNA damage, DNA repair, DNA replication, Ligase, Magnesium, Manganese, Metal-binding, NAD; HET: SO4; 1.8A {Staphylococcus aureus} SCOP: d.142.2.2
Probab=24.86 E-value=3.9e+02 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred EEEEEEECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 58 TITEGTRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 58 ~~~~g~~dGV~I~V~~~~~g~i~TAy 83 (88)
+.+.-.+||+.+.+.+. +|..+.||
T Consensus 107 ~~~e~KlDGvs~~l~y~-~G~lv~a~ 131 (318)
T 3JSL_B 107 YMCELKIDGLAVSLKYV-DGYFVQGL 131 (318)
T ss_dssp EEEEEEECSEEEEEEEE-TTEEEEEE
T ss_pred EEEEEecCceEEEEEEE-CCEEEEEE
No 45
>7K72_C DNA ligase A; Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, LIGASE; HET: NAD, MPD; 2.05A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)} SCOP: d.142.2.0
Probab=24.41 E-value=3.9e+02 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEEEEECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 58 TITEGTRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 58 ~~~~g~~dGV~I~V~~~~~g~i~TAy 83 (88)
+.+.-.+||+.+.+.+. +|+.+.|+
T Consensus 126 ~~~e~K~DGvs~~l~y~-~G~lv~a~ 150 (336)
T 7K72_C 126 YLCELKIDGVALSLVYR-EGRLTRAS 150 (336)
T ss_dssp EEEEEEECSEEEEEEEE-TTEEEEEE
T ss_pred EEEEEEeCcceEEEEEE-CCEEEEEE
No 46
>2GKP_A hypothetical protein NMB0488; structural genomics, APC83854, hypothetical protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN; HET: MSE; 1.35A {Neisseria meningitidis} SCOP: d.351.1.1
Probab=24.32 E-value=1.8e+02 Score=19.78 Aligned_cols=33 Identities=6% Similarity=-0.123 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 10 TGGGHRPGTGKPGKSEFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 10 ~~gGH~~g~g~~gkt~FP~~Ws~~~I~~ai~~v~~ 44 (88)
..||...-.. ....+|.+.+++++-++|++++.
T Consensus 132 ~~~g~~~~~~--~~i~l~~~~s~e~LG~av~~al~ 164 (167)
T 2GKP_A 132 KLEAWDAIDA--DDVILSLDNSPEEIGAGLKLALS 164 (167)
T ss_dssp ETTEEEECSS--CCEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCcceecCC--CeEEEeCCCCHHHHHHHHHHHHh
No 47
>PF20636.1 ; SMN_G2-BD ; Survival Motor Neuron, Gemin2-binding domain
Probab=24.28 E-value=1.1e+02 Score=12.28 Aligned_cols=16 Identities=13% Similarity=0.520 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCHHHHHHHHHHHHhC
Q WP_029789863.1 30 WSDDKIMHEISDIATD 45 (88)
Q Consensus 30 Ws~~~I~~ai~~v~~~ 45 (88)
|++..++++..+.+..
T Consensus 3 wdd~~l~~~~~~~~~~ 18 (18)
T A0A0D8XRC6_DIC 3 WDDTELIKMYEHAVSA 18 (18)
T ss_pred ccHHHHHHHHHHHhhC
No 48
>PF15002.10 ; ERK-JNK_inhib ; ERK and JNK pathways, inhibitor
Probab=23.65 E-value=1.4e+02 Score=21.68 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC
Q WP_029789863.1 21 PGKSEFPQGWSDDKIMHEISDIATD 45 (88)
Q Consensus 21 ~gkt~FP~~Ws~~~I~~ai~~v~~~ 45 (88)
++ ..|| .++.+.+|+..|++|
T Consensus 71 ~~-~~fp---~d~~~~dals~vlEN 91 (198)
T T1EZX4_HELRO/4 71 PG-DPFP---SDDNIKEVFSLVLEN 91 (198)
T ss_pred CC-CCCC---CChHHHHHHHHHHHh
No 49
>4QQ0_A Adenylate cyclase-like protein; BON-domain, type III secretion, membrane protein, STRUCTURAL PROTEIN; HET: SO4; 2.0A {Chlamydia trachomatis}
Probab=22.58 E-value=4.1e+02 Score=20.23 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CCHHHHHHHHHH-HHhCCccceeCCC---CCeEEEEEEEC
Q WP_029789863.1 30 WSDDKIMHEISD-IATDPNAIRRNGR---GGRTITEGTRN 65 (88)
Q Consensus 30 Ws~~~I~~ai~~-v~~~P~~~~~~~~---~g~~~~~g~~d 65 (88)
|++++|.+++.+ ++.+|......-. +|.+...|.+.
T Consensus 115 ~~de~i~~~v~~~L~~~~~~~~v~v~~~~~G~v~L~G~v~ 154 (280)
T 4QQ0_A 115 IDDEAVWQEMNILLSKNPEFKGISMQSPEPGIFVISGYLK 154 (280)
T ss_dssp EEHHHHHHHHHHHHHTSGGGTEEEEEEEETTEEEEEEEES
T ss_pred CChHHHHHHHHHHHhhCCccCCCceecCcCcEEEEEEEeC
No 50
>4PY9_A Putative exopolyphosphatase-related protein; Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, EXOPOLYPHOSPHATASE-RELATED PROTEIN, UNKNOWN FUNCTION; HET: PO4, MSE; 2.25A {Bacteroides fragilis}
Probab=22.24 E-value=2.1e+02 Score=20.78 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 10 TGGGHRPGTGKPGKSEFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 10 ~~gGH~~g~g~~gkt~FP~~Ws~~~I~~ai~~v~~ 44 (88)
.+|||....|. .|| .+-+++++.+.+.++
T Consensus 307 ~GGGH~~AaG~----~~~--~~~~~~~~~i~~~l~ 335 (343)
T 4PY9_A 307 NGGGHLNASGG----EFY--GTMEEAVKVFEQALE 335 (343)
T ss_dssp SCEECSSEEEE----EES--SCHHHHHHHHHHHHH
T ss_pred CCCCCCccCce----Eee--cCHHHHHHHHHHHHH
No 51
>PF06236.15 ; MelC1 ; Tyrosinase co-factor MelC1
Probab=22.18 E-value=2.2e+02 Score=19.31 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred EECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 63 TRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 63 ~~dGV~I~V~~~~~g~i~TAy 83 (88)
.|||+.+.|..+.+|..+|+.
T Consensus 61 ~IDGr~LhVmr~adG~y~S~v 81 (109)
T K4RFH5_STRDJ/1 61 FVDGVELHVMRNADGSWISVV 81 (109)
T ss_pred EECCEEeEEEECCCCCEEecc
No 52
>PF05256.16 ; UPF0223 ; Uncharacterised protein family (UPF0223)
Probab=21.76 E-value=1.6e+02 Score=19.11 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCCCHHHHHHHHH
Q WP_029789863.1 28 QGWSDDKIMHEIS 40 (88)
Q Consensus 28 ~~Ws~~~I~~ai~ 40 (88)
.+||.++|++.|.
T Consensus 8 ~~WsteEii~Vi~ 20 (86)
T YFDD_LACLA/4-8 8 LSWSTTEMTEVLS 20 (86)
T ss_pred CCCCHHHHHHHHH
No 53
>4GLW_A DNA ligase; DNA ligase A, inhibitor, LIGASE-LIGASE INHIBITOR complex; HET: NMN, 0XT, SO4; 2.0A {Streptococcus pneumoniae} SCOP: d.142.2.2
Probab=21.60 E-value=5.3e+02 Score=19.32 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred EEEEEEECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 58 TITEGTRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 58 ~~~~g~~dGV~I~V~~~~~g~i~TAy 83 (88)
|.+.=.+||+.+.+.+. +|.++.+|
T Consensus 104 ~~~e~K~DG~~~~l~~~-~g~l~~~~ 128 (305)
T 4GLW_A 104 YICELKIDGLSISLTYE-KGILVAGV 128 (305)
T ss_dssp EEEEEEECSEEEEEEEE-TTEEEEEE
T ss_pred EEEEEeeCceEEEEEEe-CCeEEEEE
No 54
>3BAC_A DNA ligase; Adenylation Domain, DNA damage, DNA repair, DNA replication, Ligase, NAD; HET: 3B9, PO4; 3.0A {Haemophilus influenzae}
Probab=21.22 E-value=5.3e+02 Score=18.96 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CHHHHHHHHHHHHhCCccceeCCCCCeEEEEEEECCEEEEEEEEeCCeEEEEe
Q WP_029789863.1 31 SDDKIMHEISDIATDPNAIRRNGRGGRTITEGTRNGIDIRVIQERNGDIVSGF 83 (88)
Q Consensus 31 s~~~I~~ai~~v~~~P~~~~~~~~~g~~~~~g~~dGV~I~V~~~~~g~i~TAy 83 (88)
+.+++.+....+............ +.++=.+||+.+.+.+. +|+++.+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~K~DG~r~~l~~~-~g~~~~~~ 72 (270)
T 3BAC_A 24 SDAEFNAFVKRIEDRLILLPKPLT---FCCEPKLDGLAVSILYV-NGELTQAA 72 (270)
T ss_dssp SHHHHHHHHHHHHHHSSSCCSSCE---EEEEEEESSEEEEEEEE-TTEEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCce---EEEEEecCCeeEEEEEE-CCEEEEee
No 55
>8CSS_G 28S ribosomal protein S9, mitochondrial; Ribonucleoprotein complex Mitochondria Biogenesis, RIBOSOME; HET: MG, ATP, GDP, SAM, NAD, MA6; 2.36A {Homo sapiens}
Probab=21.00 E-value=1.4e+02 Score=24.49 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred CCCCCHHHHHHHHHHHH
Q WP_029789863.1 27 PQGWSDDKIMHEISDIA 43 (88)
Q Consensus 27 P~~Ws~~~I~~ai~~v~ 43 (88)
|+++|.++|-.||+.++
T Consensus 96 pe~ftq~did~aI~YLf 112 (396)
T 8CSS_G 96 PETFTQEDIDRAIAYLF 112 (396)
T ss_dssp GGGCCHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHC
No 56
>PF09133.14 ; SANTA ; SANTA (SANT Associated)
Probab=20.97 E-value=75 Score=19.50 Aligned_cols=7 Identities=57% Similarity=1.450 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCCCCCH
Q WP_029789863.1 26 FPQGWSD 32 (88)
Q Consensus 26 FP~~Ws~ 32 (88)
||++|.+
T Consensus 83 FP~~Wk~ 89 (90)
T M4F308_BRARP/6 83 FPYHWKD 89 (90)
T ss_pred CCCchhc
No 57
>PF08471.14 ; Ribonuc_red_2_N ; Class II vitamin B12-dependent ribonucleotide reductase
Probab=20.83 E-value=1.8e+02 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 25 EFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 25 ~FP~~Ws~~~I~~ai~~v~~ 44 (88)
+||+.||..-+.-+...-++
T Consensus 12 e~P~~WS~~A~~i~a~kyfr 31 (117)
T D5BSP1_PUNMI/3 12 EIPEQFSQVATDILAQKYFR 31 (117)
T ss_pred EccCccCHHHHHHHHHHHhc
No 58
>4Q2J_A DNA-binding protein SATB1; DNA binding protein; 2.603A {Mus musculus}
Probab=20.72 E-value=2.1e+02 Score=20.79 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCcc
Q WP_029789863.1 23 KSEFPQGWSDDKIMHEISDIATDPNA 48 (88)
Q Consensus 23 kt~FP~~Ws~~~I~~ai~~v~~~P~~ 48 (88)
....|+.|+.++|.+++..++.....
T Consensus 111 ~~~~p~~~~~~~Vr~~Ll~LL~~~~q 136 (180)
T 4Q2J_A 111 EDLPPEQWSHTTVRNALKDLLKDMNQ 136 (180)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHTSSCH
T ss_pred ccCCchhccHHHHHHHHHHHHHHcch
No 59
>PF09412.14 ; XendoU ; Endoribonuclease XendoU
Probab=20.33 E-value=3.4e+02 Score=20.40 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred EECCEEEEEEEE---eCC--eEEEEeE
Q WP_029789863.1 63 TRNGIDIRVIQE---RNG--DIVSGFP 84 (88)
Q Consensus 63 ~~dGV~I~V~~~---~~g--~i~TAyP 84 (88)
.++|..+.+... .++ .|.||||
T Consensus 230 ~l~g~~~~i~~~~~~~~~~~~i~tayP 256 (256)
T E5S926_TRISP/7 230 KFRSCTGNIFTYSLQRRNKSYLSTAYF 256 (256)
T ss_pred EECCEEEEEEEEEeccCCceEEEEeeC
No 60
>1SXE_A Transcriptional regulator ERG; alpha helical, TRANSCRIPTION, SIGNALING PROTEIN; NMR {Homo sapiens} SCOP: a.60.1.1, l.1.1.1
Probab=20.20 E-value=2.1e+02 Score=17.10 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCCCHHHHHHHHHHHHh
Q WP_029789863.1 27 PQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 27 P~~Ws~~~I~~ai~~v~~ 44 (88)
|..|+.+++...+..+.+
T Consensus 27 p~~Ws~~~v~~wl~~~~~ 44 (97)
T 1SXE_A 27 PTLWSTDHVRQWLEWAVK 44 (97)
T ss_dssp TTSCCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
No 61
>2M7A_A Uncharacterized protein; bacteriophage, zinc binding, CHCC motif, UNKNOWN FUNCTION; HET: ZN; NMR {Escherichia coli}
Probab=20.13 E-value=2.4e+02 Score=18.29 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCC------CCHHHHHHHHHHHHhC
Q WP_029789863.1 26 FPQG------WSDDKIMHEISDIATD 45 (88)
Q Consensus 26 FP~~------Ws~~~I~~ai~~v~~~ 45 (88)
|+++ ++.+++.++|.+++.+
T Consensus 60 ~~~g~~~~~f~~~~e~~daIk~v~~~ 85 (101)
T 2M7A_A 60 YQKDNSCNLFNTLTEARDAIKDAYES 85 (101)
T ss_dssp HCSCCCCSTTSCTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHh
No 62
>8Q84_O DASH complex subunit SPC34; Kinetochore, microtubule, error correction, chromosome segregation, CELL CYCLE;{Saccharomyces cerevisiae}
Probab=20.03 E-value=2.2e+02 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Q WP_029789863.1 22 GKSEFPQGWSDDKIMHEISDIAT 44 (88)
Q Consensus 22 gkt~FP~~Ws~~~I~~ai~~v~~ 44 (88)
+||.|..+++-+.++.++..+++
T Consensus 197 r~t~~~~d~dve~lL~~aekL~~ 219 (295)
T 8Q84_O 197 RKTIFVEDFPTDLILKVMAEVTD 219 (295)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred ccceecCCCCHHHHHHHHHHHHH