Query FD01844648_01401 YD repeat-containing protein
Match_columns 102
No_of_seqs 103 out of 425
Neff 6.09151
Searched_HMMs 86581
Date Mon Feb 26 21:01:42 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2053782.hhr -oa3m ../results/2053782.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14040.10 ; DNase_NucA_NucB ; 99.9 1.8E-23 2.1E-28 138.8 9.1 101 2-102 1-114 (115)
2 5OMT_A NucB; Endonuclease, bio 99.7 7.5E-16 8.6E-21 93.6 10.8 100 2-101 8-107 (110)
3 PF19913.3 ; WCOB ; Wolframin C 45.3 18 0.00021 24.6 0.7 42 54-101 1-42 (104)
4 3ZIH_A CELL DIVISION PROTEIN S 25.1 1.8E+02 0.0021 19.5 2.9 38 1-39 8-46 (95)
5 PF12080.12 ; GldM_4th ; GldM C 24.7 1.6E+02 0.0018 19.3 2.5 18 84-101 71-88 (112)
6 6SCQ_A Cell division protein S 24.1 3E+02 0.0034 17.5 3.6 39 1-39 6-45 (74)
7 2O3L_B Hypothetical protein; S 22.5 1.6E+02 0.0019 19.0 2.2 15 11-25 45-59 (85)
8 PF08863.14 ; YolD ; YolD-like 22.3 2.1E+02 0.0024 17.8 2.7 31 4-34 24-54 (95)
9 PF14399.10 ; BtrH_N ; Butirosi 20.9 2.2E+02 0.0026 17.2 2.5 29 3-31 69-97 (132)
No 1
>PF14040.10 ; DNase_NucA_NucB ; Deoxyribonuclease NucA/NucB
Probab=99.90 E-value=1.8e-23 Score=138.76 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=86.4 Template_Neff=9.500
Q ss_pred EEecHHHCHHHHHHHHHHHHcCCCceeEeCCccH--HHHHHHh-cCCC--------CCCCCCCCCCCCceeeecCCCCcE
Q FD01844648_014 2 LRISKKEYPETAQHIEDAINSGKADVVTIDRDNS--AANRAKS-LKGI--------PTKPGKDRDEWPMAMFKEGGTGAD 70 (102)
Q Consensus 2 ~~~~~~~~P~~a~hi~~A~~~G~P~~lT~d~~~~--~~rR~~a-~~g~--------p~~~g~d~DEyP~A~t~EGG~ga~ 70 (102)
+.|+..++|++++|+..|+..|.|.+||++.... .+||+++ |... ....+.+|||||||++.|||.+++
T Consensus 1 ~~~~~~~~p~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~r~~~~c~~~~~~~~~~~~~~~~~~cdeyP~ast~egg~~~~ 80 (115)
T Q0CJ76_ASPTN/2 1 FAWNCANSRQACINACFAVQCGNANPIQTRGPPGSSTAQRKRAGCAGSICNALTAPHPVIGPSCDEFPFASSTEGGDGAY 80 (115)
T ss_pred CceeccCCHHHHHHHHHHHHcCCCCCcccCCCCCCchHHHHHhccCCCccccCCCCCCCCCCCccccCccccccCCCcCE
Confidence 4688999999999999999999999999999743 3666654 4311 123679999999999999999999
Q ss_pred EEecCHHHHhhchHHHHHHhcC--CCCCCEEEEC
Q FD01844648_014 71 VEYISPSDNRGAGSSIGHALDG--VRNGAKLKII 102 (102)
Q Consensus 71 v~~Ip~~dN~~~G~~l~~~~~~--~~dG~~f~v~ 102 (102)
+++|+..+|+.+|+.|+.||+. +.+||+|.|.
T Consensus 81 ~~~v~~~~n~~~g~~l~~~~~~~~~~~gd~f~v~ 114 (115)
T Q0CJ76_ASPTN/2 81 LRCIPAADNYSQGGQLSGFFVVNGVVAGGQYYTF 114 (115)
T ss_pred EEeeeHHHHHHHHHHHHHHHHHcCCCCCCceEEe
Confidence 9999999999999999999954 9999999874
No 2
>5OMT_A NucB; Endonuclease, biofilm, Bacillus subtilis, DNA, hydrolase; 1.35A {Bacillus licheniformis}
Probab=99.70 E-value=7.5e-16 Score=93.59 Aligned_cols=100 Identities=57% Similarity=0.971 Sum_probs=83.1 Template_Neff=12.800
Q ss_pred EEecHHHCHHHHHHHHHHHHcCCCceeEeCCccHHHHHHHhcCCCCCCCCCCCCCCCceeeecCCCCcEEEecCHHHHhh
Q FD01844648_014 2 LRISKKEYPETAQHIEDAINSGKADVVTIDRDNSAANRAKSLKGIPTKPGKDRDEWPMAMFKEGGTGADVEYISPSDNRG 81 (102)
Q Consensus 2 ~~~~~~~~P~~a~hi~~A~~~G~P~~lT~d~~~~~~rR~~a~~g~p~~~g~d~DEyP~A~t~EGG~ga~v~~Ip~~dN~~ 81 (102)
+.+++..++..+.+++.++..+.+..++++......++...+.......+..|||||++.+.+++.+..+++++..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (110)
T 5OMT_A 8 LYFPASRYPETGAHISDAIKAGHADVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRG 87 (110)
T ss_dssp EECCTTTSHHHHHHHHHHHHTTCCSEEEBCCTTHHHHHHHHHTTCCCBTTEEEEEESCTTBTTCSTTCEEEEEEHHHHHH
T ss_pred EEechhhCcHHHHHHHHHHHcCCCCCcccCccchhHHHHHhccCCCCCCCCCCcccccceeecCCCccEEEEeCHHHHhh
Confidence 56788899999999999999888889999776444445444433233456789999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCCCEEEE
Q FD01844648_014 82 AGSSIGHALDGVRNGAKLKI 101 (102)
Q Consensus 82 ~G~~l~~~~~~~~dG~~f~v 101 (102)
++..+..+++.+.+|++|.+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~ 107 (110)
T 5OMT_A 88 AGSWVGNRLNGYADGTRILF 107 (110)
T ss_dssp HHHHHHHHHTTSCTTCEEEE
T ss_pred hHHHHHHHHhcCCCCCeEEE
Confidence 99999999877889998876
No 3
>PF19913.3 ; WCOB ; Wolframin C-terminal OB-fold domain
Probab=45.33 E-value=18 Score=24.63 Aligned_cols=42 Identities=2% Similarity=-0.086 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCCCceeeecCCCCcEEEecCHHHHhhchHHHHHHhcCCCCCCEEEE
Q FD01844648_014 54 RDEWPMAMFKEGGTGADVEYISPSDNRGAGSSIGHALDGVRNGAKLKI 101 (102)
Q Consensus 54 ~DEyP~A~t~EGG~ga~v~~Ip~~dN~~~G~~l~~~~~~~~dG~~f~v 101 (102)
.|.|-|..+-+...+ +..-.-.+|..+.+|+..++.||+|.+
T Consensus 1 ~n~Y~fei~v~m~~~------~~~v~L~a~~~F~~~~~~L~~gd~i~F 42 (104)
T T1F071_HELRO/6 1 LNRYTFEVTVLVEKT------DQMFKLIMPHTFMEAVKVLEKNDEILF 42 (104)
T ss_pred CceEEEEEEEEecCC------CcEEEEEccchhHHHHHhccCCCEEEE
No 4
>3ZIH_A CELL DIVISION PROTEIN SEPF; CELL CYCLE; 2.0A {BACILLUS SUBTILIS}
Probab=25.12 E-value=1.8e+02 Score=19.47 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CEEecHHHCHHHHHHHHHHHHcCCCceeEeCCccHH-HHH
Q FD01844648_014 1 ELRISKKEYPETAQHIEDAINSGKADVVTIDRDNSA-ANR 39 (102)
Q Consensus 1 ~~~~~~~~~P~~a~hi~~A~~~G~P~~lT~d~~~~~-~rR 39 (102)
++.+....| +-+..|.++++.|++.+|.+..-... ++|
T Consensus 8 i~v~~p~~~-~d~~~i~~~lk~g~~Vilnl~~l~~~~~~R 46 (95)
T 3ZIH_A 8 VVLSEPRVY-AEAQEIADHLKNRRAVVVNLQRIQHDQAKR 46 (95)
T ss_dssp EEEECCSSG-GGHHHHHHHHHTTCEEEEECSSSCHHHHHH
T ss_pred EEEECCCCH-HHHHHHHHHHhCCCeEEEECCCCCHHHHHH
No 5
>PF12080.12 ; GldM_4th ; GldM C-terminal domain
Probab=24.68 E-value=1.6e+02 Score=19.28 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHhcCCCCCCEEEE
Q FD01844648_014 84 SSIGHALDGVRNGAKLKI 101 (102)
Q Consensus 84 ~~l~~~~~~~~dG~~f~v 101 (102)
..+..+++.++.||+|.|
T Consensus 71 ~~~~~~i~~lk~Gd~i~~ 88 (112)
T R5KUL3_9BACT/3 71 QRQRDTFRRLARNKRFYI 88 (112)
T ss_pred HHHHHHHHhCCCCCEEEE
No 6
>6SCQ_A Cell division protein SepF; Cell Division protein, CELL CYCLE; 1.5A {Corynebacterium glutamicum ATCC 13032}
Probab=24.14 E-value=3e+02 Score=17.52 Aligned_cols=39 Identities=26% Similarity=0.174 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CEEecHHHCHHHHHHHHHHHHcCCCceeEeCCccHH-HHH
Q FD01844648_014 1 ELRISKKEYPETAQHIEDAINSGKADVVTIDRDNSA-ANR 39 (102)
Q Consensus 1 ~~~~~~~~~P~~a~hi~~A~~~G~P~~lT~d~~~~~-~rR 39 (102)
.+.+-.-+-.+-+..|.+.+++|++.+|.+..-... .+|
T Consensus 6 ~i~~~~p~~~~d~~~i~~~lk~g~~Vilnl~~l~~~~~~R 45 (74)
T 6SCQ_A 6 TIVPVELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARR 45 (74)
T ss_dssp CCEEEECCSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
No 7
>2O3L_B Hypothetical protein; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function; HET: MSE, GOL; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=22.46 E-value=1.6e+02 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHHHHHcCCC
Q FD01844648_014 11 ETAQHIEDAINSGKA 25 (102)
Q Consensus 11 ~~a~hi~~A~~~G~P 25 (102)
++.+++.+|++.|+|
T Consensus 45 ~ll~~l~~aq~~G~~ 59 (85)
T 2O3L_B 45 ELIDLFEAGAAEGRQ 59 (85)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
No 8
>PF08863.14 ; YolD ; YolD-like protein
Probab=22.26 E-value=2.1e+02 Score=17.85 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred ecHHHCHHHHHHHHHHHHcCCCceeEeCCcc
Q FD01844648_014 4 ISKKEYPETAQHIEDAINSGKADVVTIDRDN 34 (102)
Q Consensus 4 ~~~~~~P~~a~hi~~A~~~G~P~~lT~d~~~ 34 (102)
++....-++..-+..|+..+.+..+|+-.++
T Consensus 24 ~~~~~~eei~~~l~~a~~~~~~v~i~~~~~~ 54 (95)
T E6TXV5_EVAC2/1 24 IDEQLFEEWSRILEKAYHEQLVISATKWKNG 54 (95)
T ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEEEECC
No 9
>PF14399.10 ; BtrH_N ; Butirosin biosynthesis protein H, N-terminal
Probab=20.89 E-value=2.2e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred EecHHHCHHHHHHHHHHHHcCCCceeEeC
Q FD01844648_014 3 RISKKEYPETAQHIEDAINSGKADVVTID 31 (102)
Q Consensus 3 ~~~~~~~P~~a~hi~~A~~~G~P~~lT~d 31 (102)
.+......+..+.|..++.+|+|.++..+
T Consensus 69 ~~~~~~~~~~~~~i~~~l~~g~pvi~~~~ 97 (132)
T C7M7I7_CAPOD/1 69 RQKFSSAEKAQQALDDNLAKGIPTGLQVG 97 (132)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCcEEEee