Query FD01848903_02404 type IV secretion protein Rhs
Match_columns 85
No_of_seqs 75 out of 80
Neff 5.25915
Searched_HMMs 86581
Date Mon Feb 26 22:34:46 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4940890.hhr -oa3m ../results/4940890.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1YD0_A UvrABC system protein C 94.0 1.1 1.3E-05 26.4 7.1 73 1-79 15-95 (96)
2 PF09517.14 ; RE_Eco29kI ; Eco2 91.5 3.6 4.1E-05 30.0 7.8 72 1-79 5-127 (168)
3 PF20815.1 ; GIY_YIG_2 ; GIY-YI 85.5 8.7 0.0001 25.8 6.0 65 3-69 1-121 (137)
4 1MK0_A Intron-associated endon 80.4 14 0.00016 21.2 8.8 75 1-78 2-96 (97)
5 1YD6_B UvrC; DNA BINDING PROTE 72.5 27 0.00031 20.4 7.9 70 1-70 15-93 (99)
6 PF19835.3 ; SegE_GIY-YIG ; Put 70.6 43 0.0005 22.1 7.4 70 3-73 19-121 (123)
7 2LWF_A Monothiol glutaredoxin- 66.3 55 0.00064 21.7 6.8 57 1-58 25-83 (119)
8 2WSH_C ENDONUCLEASE II; GIY-YI 57.0 91 0.0011 21.1 6.7 57 1-62 40-132 (143)
9 1ZG2_A Hypothetical UPF0213 pr 36.8 1.7E+02 0.002 18.5 7.3 54 4-58 10-71 (107)
10 PF01541.28 ; GIY-YIG ; GIY-YIG 35.9 1.2E+02 0.0014 16.3 8.1 66 3-72 3-89 (89)
11 3MX1_A Eco29kIR; type II restr 35.5 3.4E+02 0.0039 21.4 7.7 72 1-79 66-188 (235)
12 4G5A_B Uncharacterized protein 35.1 89 0.001 19.9 2.6 17 1-17 78-96 (99)
13 PF19239.3 ; GIY_YIG_domain ; G 30.1 2.7E+02 0.0031 18.7 5.9 58 1-62 36-120 (137)
14 5OXZ_B NEQ528; Intein complex 30.1 78 0.00091 17.9 1.5 11 5-15 12-23 (33)
15 1YWL_A Hypothetical UPF0213 pr 26.6 2.4E+02 0.0028 16.9 7.2 55 4-58 9-72 (96)
No 1
>1YD0_A UvrABC system protein C; DNA BINDING PROTEIN; 1.5A {Thermotoga maritima}
Probab=94.01 E-value=1.1 Score=26.42 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CceeEEEe-cCCeEEEeecCHHHHHHHHHhh------h-CCCCCeeEEEEEeCCCchHHHHHHHHHHHHcCCCCCCCCcc
Q FD01848903_024 1 LTGTYMFT-DGSNWYIGKGPESRMYDSMGER------V-GGKINVTQGLHVDYGNNTTGLMVEAELMRRNSAVTDVNFKN 72 (85)
Q Consensus 1 ~tGsY~i~-~sGk~YvGKG~~~Rm~~S~~~~------~-~~~d~~~~~~w~~a~~~~~AFi~E~~~m~~~gg~~~~~~yN 72 (85)
..|.|.|. ..+-.|+|.....+.+...... . .. .....+.|.++.+..++-..|..++.... +.+|
T Consensus 15 ~~Gvy~i~~~~~~~YiG~s~~l~~rl~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~e~~li~~~~-----p~~n 88 (96)
T 1YD0_A 15 EPGVYIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEKVFRIG-EEADELETIVVMNEREAFILEANLIKKYR-----PKYN 88 (96)
T ss_dssp SCEEEEEEETTEEEEEEEESSHHHHHHGGGSCSSHHHHHHH-HHCSEEEEEECSSHHHHHHHHHHHHHHHC-----CTTC
T ss_pred CCeEEEEeeCCeEEEEEechhHHHHHHHhhCCCcHHHHHHh-hhccEEEEEEeCCHHHHHHHHHHHHHHhC-----CCcc
Q ss_pred ccCChhH
Q FD01848903_024 73 AINSPGE 79 (85)
Q Consensus 73 ~I~SPGk 79 (85)
....+++
T Consensus 89 ~~~~~~~ 95 (96)
T 1YD0_A 89 VRLKDTD 95 (96)
T ss_dssp C------
T ss_pred cCCCCCC
No 2
>PF09517.14 ; RE_Eco29kI ; Eco29kI restriction endonuclease
Probab=91.55 E-value=3.6 Score=29.97 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CceeEEEe-cC-----------------CeEEEeecC------------------HHHHHHHHHhhh------CCCCCee
Q FD01848903_024 1 LTGTYMFT-DG-----------------SNWYIGKGP------------------ESRMYDSMGERV------GGKINVT 38 (85)
Q Consensus 1 ~tGsY~i~-~s-----------------Gk~YvGKG~------------------~~Rm~~S~~~~~------~~~d~~~ 38 (85)
..|.|.|. .+ .-.||||.. .-|.+.....+. .. ....
T Consensus 5 ~~GVY~ly~~g~~~~y~~~~~~~~~~~~~piYVGkA~~~~~~~g~~~~~~~~~~~~L~~RL~~H~~si~~~~~l~-~~d~ 83 (168)
T B0C6N6_ACAM1/5 5 GTGVYALYCIAKSGIYSRFNSVNRTAFHIPIYVGKAVPKGWRQARQSSSSDTKSYELNNRIREHSRSIEIGEGVN-SSDF 83 (168)
T ss_pred CceEEEEEEcCCccccccccccCcccCcccEEEEccCCcchhhcccCCCCccccCCHHHHHHHHHhcccccccCC-ccce
Q ss_pred EEEEEeCC---CchHHHHHHHHHHHHcCCCCCCCCcccc------CChhH
Q FD01848903_024 39 QGLHVDYG---NNTTGLMVEAELMRRNSAVTDVNFKNAI------NSPGE 79 (85)
Q Consensus 39 ~~~w~~a~---~~~~AFi~E~~~m~~~gg~~~~~~yN~I------~SPGk 79 (85)
.+.|..+. +.-.+.. |..++..+. +.+|.+ +-||+
T Consensus 84 ~~r~l~~~~~~~~~~~~~-E~~LI~~~~-----P~wN~~~~GfG~~~pG~ 127 (168)
T B0C6N6_ACAM1/5 84 FCRFMILEGKESDLIGTV-EAALIRKYQ-----PLWNTLIDGFGNHDPGK 127 (168)
T ss_pred EEEEEEeCCCCChHHHHH-HHHHHHHHC-----CCcccccCCCCCCCCCC
No 3
>PF20815.1 ; GIY_YIG_2 ; GIY-YIG catalytic domain
Probab=85.50 E-value=8.7 Score=25.81 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred eeEEEe-cCC--------------------eEEEeecCHHHHHHHHHhh-------------------------------
Q FD01848903_024 3 GTYMFT-DGS--------------------NWYIGKGPESRMYDSMGER------------------------------- 30 (85)
Q Consensus 3 GsY~i~-~sG--------------------k~YvGKG~~~Rm~~S~~~~------------------------------- 30 (85)
|.|.|. .++ -.|+|+...-|.+.+....
T Consensus 1 GvY~~~~~~~~~~~~~~~~~~~~~~~~~~~~lYVG~a~nL~~Rl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T A0A2D3WMF1_9PR 1 GVYKWYMPQTLVDLLNVPMDGCEYKDGFGYFVYVGIAKNMRQRLDWHISQKHSKSSVKSGFLSTFRQTLCGLAKVPMDDE 80 (137)
T ss_pred CceEEecCHHHHHhccCCCCCccccCCCCceEEEEeCccHHHHHHHHhhcCCccchhcccccchHHHHHHHHhCCCCCCh
Q ss_pred ---h-CCCCCeeEEEEEeCCCchHHHHHHHHHHHHcCCCCCCC
Q FD01848903_024 31 ---V-GGKINVTQGLHVDYGNNTTGLMVEAELMRRNSAVTDVN 69 (85)
Q Consensus 31 ---~-~~~d~~~~~~w~~a~~~~~AFi~E~~~m~~~gg~~~~~ 69 (85)
. .- . ...+.|.+..+..++...|..++.....+-|..
T Consensus 81 ~~~~~~~-~-~~~i~~~~~~~~~~~~~~E~~li~~~~P~~N~~ 121 (137)
T A0A2D3WMF1_9PR 81 DTVNTII-D-QMSIEFSLCTSKDEAESIEKEIIHSSTLPLNIM 121 (137)
T ss_pred HHHHHHH-H-hceEEEEECCChHHHHHHHHHHHHHCCCCcccc
No 4
>1MK0_A Intron-associated endonuclease 1; alpha/beta fold CATALYTIC DOMAIN DNA-BINDING SURFACE, HYDROLASE; HET: CIT; 1.6A {Enterobacteria phage T4} SCOP: d.226.1.1
Probab=80.37 E-value=14 Score=21.15 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CceeEEEe--cCCeEEEeecCHHHHHHHHHhhh--CCCC--------------CeeEEEEEe--CCCchHHHHHHHHHHH
Q FD01848903_024 1 LTGTYMFT--DGSNWYIGKGPESRMYDSMGERV--GGKI--------------NVTQGLHVD--YGNNTTGLMVEAELMR 60 (85)
Q Consensus 1 ~tGsY~i~--~sGk~YvGKG~~~Rm~~S~~~~~--~~~d--------------~~~~~~w~~--a~~~~~AFi~E~~~m~ 60 (85)
..|.|.+. ..+..|+|....-+.+....... .+ . ....+.+.. ..+..++...|...+.
T Consensus 2 ~~gvy~~~~~~~~~~yiG~t~~l~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~ 80 (97)
T 1MK0_A 2 KSGIYQIKNTLNNKVYVGSAKDFEKRWKRHFKDLEKG-CHSSIKLQRSFNKHGNVFECSILEEIPYEKDLIIERANFWIK 80 (97)
T ss_dssp CCEEEEEEETTTCCEEEEEESSHHHHHHHHHHHHHHT-CCSCHHHHHHHHHHSSCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCCeEEEEeeCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCcEEEEEEEeecCCHHHHHHHHHHHHH
Q ss_pred HcCCCCCCCCccccCChh
Q FD01848903_024 61 RNSAVTDVNFKNAINSPG 78 (85)
Q Consensus 61 ~~gg~~~~~~yN~I~SPG 78 (85)
.. ...|..||.+..-|
T Consensus 81 ~~--~~~~~~~n~~~~~~ 96 (97)
T 1MK0_A 81 EL--NSKINGYNIADATF 96 (97)
T ss_dssp HT--TTTTSSSCCSSCCC
T ss_pred Hh--hccccCccccCCCC
No 5
>1YD6_B UvrC; DNA BINDING PROTEIN; HET: SO4; 2.0A {Bacillus caldotenax}
Probab=72.54 E-value=27 Score=20.45 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CceeEEEe--cCCeEEEeecCHHHHHHHHHhhh-CCC------CCeeEEEEEeCCCchHHHHHHHHHHHHcCCCCCCCC
Q FD01848903_024 1 LTGTYMFT--DGSNWYIGKGPESRMYDSMGERV-GGK------INVTQGLHVDYGNNTTGLMVEAELMRRNSAVTDVNF 70 (85)
Q Consensus 1 ~tGsY~i~--~sGk~YvGKG~~~Rm~~S~~~~~-~~~------d~~~~~~w~~a~~~~~AFi~E~~~m~~~gg~~~~~~ 70 (85)
..|.|.+. +..-.|+|....-+.+....... ... .....+.|.+..+...+...|..++....-+-|...
T Consensus 15 ~~Gvy~~~~~~~~~~yvG~t~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~li~~~~p~~n~~~ 93 (99)
T 1YD6_B 15 QPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGTHDGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVML 93 (99)
T ss_dssp SCEEEEEECTTSCEEEEEEESSHHHHHHHTTSSCCCHHHHHHHHHCCEEEEEECSSHHHHHHHHHHHHHHHCCHHHHHT
T ss_pred CCcEEEEECCCCcEEEEEecccHHHHHHHhccCCCCchHHHHHHhceeEEEEEcCCHHHHHHHHHHHHHHhCCcccccc
No 6
>PF19835.3 ; SegE_GIY-YIG ; Putative endonuclease segE, GIY-YIG domain
Probab=70.56 E-value=43 Score=22.06 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred eeEEEe--cCCeEEEeecC-------------------------HHHHHHHHHhhhCCCCCeeEEEEEeCCCchHHHHHH
Q FD01848903_024 3 GTYMFT--DGSNWYIGKGP-------------------------ESRMYDSMGERVGGKINVTQGLHVDYGNNTTGLMVE 55 (85)
Q Consensus 3 GsY~i~--~sGk~YvGKG~-------------------------~~Rm~~S~~~~~~~~d~~~~~~w~~a~~~~~AFi~E 55 (85)
|.|.|. .+|+.|||+.. ..+..+.+-+.... +..+-..-....+..++...|
T Consensus 19 ~VY~i~~~~~~~~YIG~t~~~~~r~~~~~~r~~~h~~~~~~~~~~~~~l~~~~~~~g~-~~f~~~iLe~~~~~~~l~~~E 97 (123)
T A0A0K0KW02_9CA 19 FVYRITNTTSSKSYIGRKYFVQKRKPRGGKRRVTSESDWKQYYGSSEELKQDIRSNGR-DSFRREIISLHRTLGKVNYEE 97 (123)
T ss_pred EEEEEEECCCCcEEeeEEEEecccCCCCCceeeeeecchhhhcCCcHHHHHHHHHhCH-HhceEEEEEEeCChHHHHHHH
Q ss_pred HHHHHHcCCCCCCC------Cccc
Q FD01848903_024 56 AELMRRNSAVTDVN------FKNA 73 (85)
Q Consensus 56 ~~~m~~~gg~~~~~------~yN~ 73 (85)
...+.......+.. .||.
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~gyN~ 121 (123)
T A0A0K0KW02_9CA 98 TRQLFLHGVLTESLEDGTPAYYNS 121 (123)
T ss_pred HHHHHHhCCCCcCCCCCCCCcccc
No 7
>2LWF_A Monothiol glutaredoxin-S16, chloroplastic; Nuclease, Glutaredoxin, HYDROLASE; NMR {Arabidopsis thaliana}
Probab=66.34 E-value=55 Score=21.67 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CceeEEEe-cCCeE-EEeecCHHHHHHHHHhhhCCCCCeeEEEEEeCCCchHHHHHHHHH
Q FD01848903_024 1 LTGTYMFT-DGSNW-YIGKGPESRMYDSMGERVGGKINVTQGLHVDYGNNTTGLMVEAEL 58 (85)
Q Consensus 1 ~tGsY~i~-~sGk~-YvGKG~~~Rm~~S~~~~~~~~d~~~~~~w~~a~~~~~AFi~E~~~ 58 (85)
..|.|.|. .++.. |+|+...-|.+......... ..+..+.+..........+.+...
T Consensus 25 ~~GVY~i~d~~~~~lYIG~s~nLr~rl~~h~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 83 (119)
T 2LWF_A 25 ASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVP-ELCGSVKVGIVEEPDKAVLTQAWK 83 (119)
T ss_dssp SSEEEEEECTTCCEEEEEEESCHHHHHHHHHHHSG-GGCSEEEEEECSSCCHHHHHHHHH
T ss_pred CcEEEEEEcCCCCEEEEEEeccHHHHHHHHHhcCh-hhcceEEEEEecCCCHHHHHHHHH
No 8
>2WSH_C ENDONUCLEASE II; GIY-YIG, NUCLEASE, HYDROLASE; HET: PEG, MSE; 1.9A {ENTEROBACTERIA PHAGE T4}
Probab=57.00 E-value=91 Score=21.11 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CceeEEEe-cCCeEEEeecCHHHHHHHHHhhh-C---------------------CCCCeeEEEEEeCCCch--------
Q FD01848903_024 1 LTGTYMFT-DGSNWYIGKGPESRMYDSMGERV-G---------------------GKINVTQGLHVDYGNNT-------- 49 (85)
Q Consensus 1 ~tGsY~i~-~sGk~YvGKG~~~Rm~~S~~~~~-~---------------------~~d~~~~~~w~~a~~~~-------- 49 (85)
..|.|.|. ++.-.|+|+..--|.+....... . . .+.|.......
T Consensus 40 ~~GvY~~~~~~~ilYIG~t~~l~~Rl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~i~~~~~~~~~~~~~~~~~ 114 (143)
T 2WSH_C 40 YNVIYAIAINDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGS-----KVEFYARQCFNLSMTNELG 114 (143)
T ss_dssp CSEEEEEEETTEEEEEEEESCHHHHHHHHHHGGGC-----CCHHHHHHHHHHHTTC-----CEEEEEEECCEEEEEETTE
T ss_pred CCeEEEEEECCEEEEEEecCCHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHCCC-----eEEEEEEecCCcccccccc
Q ss_pred -----HHHHHHHHHHHHc
Q FD01848903_024 50 -----TGLMVEAELMRRN 62 (85)
Q Consensus 50 -----~AFi~E~~~m~~~ 62 (85)
+++..|..++...
T Consensus 115 ~~~~~~~~~~E~~li~~~ 132 (143)
T 2WSH_C 115 TMTIATIDLEAPLFIKLF 132 (143)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHh
No 9
>1ZG2_A Hypothetical UPF0213 protein BH0048; BhR2, Autostructure, Northeast Structural Genomics Consortium, PSI, Protein Structure Initiative, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Bacillus halodurans}
Probab=36.81 E-value=1.7e+02 Score=18.46 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred eEEEe-cCCeEEEeecCHHHHHHHHHhhh-------CCCCCeeEEEEEeCCCchHHHHHHHHH
Q FD01848903_024 4 TYMFT-DGSNWYIGKGPESRMYDSMGERV-------GGKINVTQGLHVDYGNNTTGLMVEAEL 58 (85)
Q Consensus 4 sY~i~-~sGk~YvGKG~~~Rm~~S~~~~~-------~~~d~~~~~~w~~a~~~~~AFi~E~~~ 58 (85)
.|.+. .+|+.|+|--....-+....... .. ....-+.+....+..+|...|...
T Consensus 10 vYil~~~~~~~YiG~T~~l~~R~~~h~~~~~~~~t~~~-~~~~lv~~~~~~~~~~A~~~E~~~ 71 (107)
T 1ZG2_A 10 VYILECKDGSWYTGYTTDVDRRIKKHASGKGAKYTRGR-GPFRLVATWAFPSKEEAMRWEYEV 71 (107)
T ss_dssp EEEEECTTSCEEEEEECCHHHHHHHHHHHTTCCSCCCC-SSCEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEEeCCCeEEEEEeCCHHHHHHHHHCCCCccccccC-CCeEEEEEEEcCCHHHHHHHHHHH
No 10
>PF01541.28 ; GIY-YIG ; GIY-YIG catalytic domain
Probab=35.88 E-value=1.2e+02 Score=16.25 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred eeEEEe--cCCeEEEeec---CHHHHHHHHHhhh-C-------------CCCCeeEEEEEeCCCchHH--HHHHHHHHHH
Q FD01848903_024 3 GTYMFT--DGSNWYIGKG---PESRMYDSMGERV-G-------------GKINVTQGLHVDYGNNTTG--LMVEAELMRR 61 (85)
Q Consensus 3 GsY~i~--~sGk~YvGKG---~~~Rm~~S~~~~~-~-------------~~d~~~~~~w~~a~~~~~A--Fi~E~~~m~~ 61 (85)
|.|.+. +.+..|+|-. ...|+........ . . +...-..+....+..++ .+.|...+..
T Consensus 3 ~vy~~~~~~~~~~yig~t~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (89)
T VF019_IIV6/3-9 3 YIYAIENNLNDEVYIGSTLRTIEERFSEHKASARRRPTCTFHKFMSLHGI-EHFKIIELKKIEVNSFFELQALEESYIRD 81 (89)
T ss_pred eEEEEEeCCCCcEEEEeeCCCHHHHHHHHHHHhccCCCCchHHHHHHhCc-CCeEEEEEEEeccCChHHHHHHHHHHHHH
Q ss_pred cCCCCCCCCcc
Q FD01848903_024 62 NSAVTDVNFKN 72 (85)
Q Consensus 62 ~gg~~~~~~yN 72 (85)
... +..+|
T Consensus 82 ~~~---~~~~n 89 (89)
T VF019_IIV6/3-9 82 YGS---LNTIN 89 (89)
T ss_pred hCC---CCCCC
No 11
>3MX1_A Eco29kIR; type II restriction endonuclease, GIY-YIG endonuclease, HYDROLASE; 2.3A {Escherichia coli}
Probab=35.49 E-value=3.4e+02 Score=21.36 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CceeEEEe-cC-----------------CeEEEeecCH------------------HHHHHHHHhhh------CCCCCee
Q FD01848903_024 1 LTGTYMFT-DG-----------------SNWYIGKGPE------------------SRMYDSMGERV------GGKINVT 38 (85)
Q Consensus 1 ~tGsY~i~-~s-----------------Gk~YvGKG~~------------------~Rm~~S~~~~~------~~~d~~~ 38 (85)
..|.|.|- .. --.||||... -|.+.....+. .. ..-.
T Consensus 66 ~~GVY~lyy~G~~~~Y~~~~~~~~~~~~~pIYVGKA~~~~~r~g~~~~~~~~~~~~L~~RL~~H~~~i~~~~~l~-~~df 144 (235)
T 3MX1_A 66 GAGVYALYYTGHYSLYDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLD-LCDF 144 (235)
T ss_dssp CCEEEEEEECSCCGGGTTHHHHTSSSCCCCSEEEEECCTTTSCSSCSSCSSCCCSHHHHHHHHHHHHHHTCSSCC-GGGE
T ss_pred CCeeEEEEEeeCChhhchhhhhccccCCccEEEEccCCccccccccccccccccchHHHHHHHHhhhcccCCCcc-cceE
Q ss_pred EEEEEeCCCc---hHHHHHHHHHHHHcCCCCCCCCccc------cCChhH
Q FD01848903_024 39 QGLHVDYGNN---TTGLMVEAELMRRNSAVTDVNFKNA------INSPGE 79 (85)
Q Consensus 39 ~~~w~~a~~~---~~AFi~E~~~m~~~gg~~~~~~yN~------I~SPGk 79 (85)
.+.|....+. -.+. .|..+|..+. +.+|. .+.||+
T Consensus 145 ~~r~l~~~~~~~~~i~~-~E~~LI~~~~-----P~WN~~i~GFG~~~PG~ 188 (235)
T 3MX1_A 145 SCRFVIFEATGSDMIST-VQAALIKIYK-----PLWNTVVDGFGNHTPGA 188 (235)
T ss_dssp EEEEEECCSGGGGGHHH-HHHHHHHHHC-----CHHHHTSCCTTCCCCCS
T ss_pred EEEEEEeccCCchhHHH-HHHHHHHHHC-----CCccccCCCCCCCCCCC
No 12
>4G5A_B Uncharacterized protein; Immunoglobulin - like beta-sandwich, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY; HET: MSE, GOL; 1.69A {Bacteroides thetaiotaomicron}
Probab=35.12 E-value=89 Score=19.86 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CceeEEEe--cCCeEEEee
Q FD01848903_024 1 LTGTYMFT--DGSNWYIGK 17 (85)
Q Consensus 1 ~tGsY~i~--~sGk~YvGK 17 (85)
..|.|+|. .++..|.|+
T Consensus 78 ~~G~Y~l~i~~~~~~~~g~ 96 (99)
T 4G5A_B 78 SLGQYELYMYNASVKVVGN 96 (99)
T ss_dssp CSSEEEEEEECSSCEEEEE
T ss_pred CCcEEEEEEEeCCeEEEEE
No 13
>PF19239.3 ; GIY_YIG_domain ; GIY-YIG domain-containing protein
Probab=30.10 E-value=2.7e+02 Score=18.68 Aligned_cols=58 Identities=14% Similarity=-0.060 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CceeEEEe-cC---------------CeEEEeecCHHHHHHHH----------Hhhh-CCCCCeeEEEEEeCCCchHHHH
Q FD01848903_024 1 LTGTYMFT-DG---------------SNWYIGKGPESRMYDSM----------GERV-GGKINVTQGLHVDYGNNTTGLM 53 (85)
Q Consensus 1 ~tGsY~i~-~s---------------Gk~YvGKG~~~Rm~~S~----------~~~~-~~~d~~~~~~w~~a~~~~~AFi 53 (85)
..|.|.|. .. .-.|+|+...-+.+... .... .- .....+.+..+. ++..
T Consensus 36 ~~GvY~~~~~~~~~~~~~~~~~~~~~~~lYIG~a~~l~~rl~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~~ 111 (137)
T ET3_ARATH/69-2 36 CTGLYELGVGVIGQDQGQNFDPDNNVLGVYVGQCVDVKSRLQDYGRRGGHLPSGLYEDIF-SEGYSVFYRWAP---EAAA 111 (137)
T ss_pred CCeEEEEEeecCCCCCCccCCCCCCeeeEEEEEeCCHHHHHHHhcccCCcCcccHHHHHH-hCCCeEEEEECh---hHHH
Q ss_pred HHHHHHHHc
Q FD01848903_024 54 VEAELMRRN 62 (85)
Q Consensus 54 ~E~~~m~~~ 62 (85)
.|.+++.++
T Consensus 112 ~e~~li~~~ 120 (137)
T ET3_ARATH/69-2 112 TEGMLLSTF 120 (137)
T ss_pred HHHHHHHhc
No 14
>5OXZ_B NEQ528; Intein complex 1, SPLICING; 1.2A {Nanoarchaeum equitans (strain Kin4-M)}
Probab=30.09 E-value=78 Score=17.87 Aligned_cols=11 Identities=18% Similarity=0.821 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred EEEe-cCCeEEE
Q FD01848903_024 5 YMFT-DGSNWYI 15 (85)
Q Consensus 5 Y~i~-~sGk~Yv 15 (85)
|.+. ++||.|+
T Consensus 12 ydlstesgkfyv 23 (33)
T 5OXZ_B 12 YDLSTESGKFYV 23 (33)
T ss_dssp EEEEETTSEEEE
T ss_pred EEccCCCceEEE
No 15
>1YWL_A Hypothetical UPF0213 protein EF2693; Alpha and beta, Structural Genomics, Northeast Structural Genomics Consortium (NESG), Protein Structure Initiative (PSI), UNKNOWN FUNCTION; NMR {Enterococcus faecalis}
Probab=26.65 E-value=2.4e+02 Score=16.89 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eEEEe-cCCeEEEeecCHHHHHHHHHhhh------C--CCCCeeEEEEEeCCCchHHHHHHHHH
Q FD01848903_024 4 TYMFT-DGSNWYIGKGPESRMYDSMGERV------G--GKINVTQGLHVDYGNNTTGLMVEAEL 58 (85)
Q Consensus 4 sY~i~-~sGk~YvGKG~~~Rm~~S~~~~~------~--~~d~~~~~~w~~a~~~~~AFi~E~~~ 58 (85)
.|.+. .++..|+|.......+....... . ...+..-+-.....+..+|...|...
T Consensus 9 vY~l~~~~~~~yiG~t~~l~~r~~~h~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~E~~~ 72 (96)
T 1YWL_A 9 FYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAF 72 (96)
T ss_dssp EEEEECTTCCCEEEEESCHHHHHHHHHHHHSCSSCSSCCSSCCEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEcCCHHHHHHHHHcCCCchhhccccCCCeEEEEEEEeCCHHHHHHHHHHH