Query FD01848789_00537 hypothetical protein
Match_columns 192
No_of_seqs 103 out of 131
Neff 5.74029
Searched_HMMs 86581
Date Tue Feb 27 23:43:29 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4994472.hhr -oa3m ../results/4994472.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF17363.6 ; DUF5388 ; Family o 53.6 89 0.001 22.3 5.2 44 31-74 10-53 (65)
2 PF17452.6 ; YnfE ; Uncharacter 51.6 1.1E+02 0.0012 23.7 5.5 58 18-75 19-77 (78)
3 5IR0_B Uncharacterized protein 48.9 38 0.00044 28.9 3.2 40 151-191 110-149 (161)
4 PF14069.10 ; SpoVIF ; Stage VI 45.3 86 0.001 23.1 4.2 49 30-78 11-60 (72)
5 6YNX_P ATPTT10; mitochondria, 45.1 39 0.00045 28.8 2.6 97 64-160 20-126 (152)
6 3AYH_A DNA-directed RNA polyme 41.9 2E+02 0.0024 22.6 6.2 66 13-78 54-131 (136)
7 PF08349.15 ; DUF1722 ; Protein 34.0 2.9E+02 0.0034 20.7 5.7 62 32-93 32-93 (117)
8 5AWF_A FeS cluster assembly pr 32.0 1.9E+02 0.0022 28.4 5.5 55 33-87 441-495 (495)
9 4DN7_B ABC transporter, ATP-bi 31.3 2.1E+02 0.0024 27.2 5.5 53 33-85 377-429 (429)
10 2F5U_A Virion protein UL25; HS 28.8 38 0.00044 33.8 0.3 9 150-158 428-436 (447)
11 PF01706.20 ; FliG_C ; FliG C-t 28.8 61 0.0007 24.3 1.3 39 135-173 3-43 (108)
12 7DV2_D SegB; DNA BINDING PROTE 28.1 91 0.001 24.4 2.1 16 133-148 54-69 (83)
13 PF18689.5 ; PriX ; Primase X 27.8 91 0.0011 24.8 2.1 16 133-148 78-93 (95)
14 PF14129.10 ; DUF4296 ; Domain 27.7 1.9E+02 0.0022 20.9 3.7 29 163-192 54-82 (87)
15 7NXP_A Capsid vertex component 27.4 39 0.00045 34.1 0.1 9 150-158 446-454 (479)
16 7ANE_p mS23; Ribosome, Mitocho 27.2 1.4E+02 0.0016 28.6 3.4 47 38-88 130-176 (321)
17 6SGA_Cb mS23; mitochondrial ri 26.7 1.3E+02 0.0015 28.7 3.2 47 38-88 130-176 (311)
18 6PPB_l Capsid vertex component 25.9 45 0.00052 34.2 0.2 9 150-158 530-538 (549)
19 7ETJ_O Capsid vertex component 25.5 47 0.00055 34.8 0.2 9 150-158 624-632 (642)
20 6W2D_w Capsid vertex component 25.1 45 0.00052 34.4 0.0 9 150-158 551-559 (570)
21 PF17447.6 ; YkpC ; Uncharacter 25.0 1.1E+02 0.0013 20.8 1.8 17 109-125 7-23 (42)
22 5ZZ8_s UL25; Herpes simplex vi 24.9 46 0.00054 34.4 0.1 9 150-158 566-574 (585)
23 PF03874.20 ; RNA_pol_Rpb4 ; RN 24.8 6.3E+02 0.0073 21.5 6.6 70 9-78 57-156 (160)
24 6RWT_A Ubiquinol-cytochrome C 24.3 6.7E+02 0.0077 21.2 7.3 67 125-191 16-83 (184)
25 PF05461.15 ; ApoL ; Apolipopro 24.2 8.5E+02 0.0098 22.4 10.8 113 23-137 39-152 (298)
26 7FJ1_c DNA packaging tegument 24.0 47 0.00054 34.0 -0.1 9 150-158 516-524 (534)
27 PF01785.21 ; Closter_coat ; Cl 23.6 77 0.00089 27.2 1.1 30 10-43 142-171 (194)
28 2YSK_A Hypothetical protein TT 23.0 6.3E+02 0.0072 20.5 6.2 69 10-78 62-134 (145)
29 PF05358.15 ; DicB ; DicB prote 21.8 1.5E+02 0.0017 22.0 2.0 18 166-184 28-45 (62)
30 5IZS_F Designed protein 5L6HC3 21.8 6.2E+02 0.0071 20.2 5.4 56 134-192 16-71 (95)
31 7BQA_B 60 kDa polyprotein; ASF 20.2 1.2E+02 0.0014 29.5 1.8 27 135-161 55-85 (339)
No 1
>PF17363.6 ; DUF5388 ; Family of unknown function (DUF5388)
Probab=53.63 E-value=89 Score=22.31 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred hhhHHHHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHH
Q FD01848789_005 31 QGETFRLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKI 74 (192)
Q Consensus 31 ~~e~~Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i 74 (192)
..++.--+.++++-+...+...++|+..++.+...+++++++..
T Consensus 10 ~~~t~~~l~AL~~~l~~~~~~~e~i~~lid~yi~~Ls~~ek~~f 53 (65)
T A0A0F4KPW2_9LA 10 DNHTRNAVLALARATADKRTASEMVSILVESFLDNMTPSKLKIY 53 (65)
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCHHHHHHH
No 2
>PF17452.6 ; YnfE ; Uncharacterized YnfE-like
Probab=51.62 E-value=1.1e+02 Score=23.70 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=0.0 Template_Neff=2.800
Q ss_pred HhcccCCcchhhhhhhHH-HHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHH
Q FD01848789_005 18 TRAVFDTENNFKRQGETF-RLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIY 75 (192)
Q Consensus 18 ~~~f~dtd~r~~n~~e~~-Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~ 75 (192)
|-||-+.+.--+|+.|.+ +-.+-++.+.+..+..-+++..+++.-+..++-++++.+|
T Consensus 19 ~pDY~GKE~Dl~~QkE~ie~Ye~~Lqq~~~s~e~fD~~vdA~ikcA~gDis~~eLE~vY 77 (78)
T Q62U34_BACLD/2 19 ASDYDGKEEDLRRQQEELERYEQQLKEKSASAESFDQVVNAAVDCAAGDISYSQLEQMF 77 (78)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhcCCCCHHHHHHHh
No 3
>5IR0_B Uncharacterized protein ORF19; Vibrio cholerae, alpha/beta protein, unknown function, structure genomics, Center for Structural Genomics of Infectious Diseases, CSGID; HET: MSE, CIT; 3.297A {Vibrio cholerae O1 biovar El Tor}
Probab=48.90 E-value=38 Score=28.89 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CcHHhHHhhhhcHHHHHHHhHHHhhcHHHHHHHHHHHHHhh
Q FD01848789_005 151 LDLLYFLVEPLMEPFIESMKIRENEGQTAFNELMEIVVDEI 191 (192)
Q Consensus 151 LDllYFLvE~~l~PfidAi~i~~~~g~~~fn~i~~~~~~~i 191 (192)
+|++.|++|..+.+|..+-..-+.. .+.++++++.+.+.+
T Consensus 110 ~dl~~~~le~Nf~~FF~~s~l~~~~-~~~l~~~~~~~~~~~ 149 (161)
T 5IR0_B 110 MDLFVWLVDENLVTLFKGSKQLQSL-KPKFDEFYKKFEDFI 149 (161)
T ss_dssp HHHHHHHHHHHTHHHHTTCC---------------------
T ss_pred HHHHHHHHHHHcHhHHccCHHHHhh-HHHHHHHHHHHHHHC
No 4
>PF14069.10 ; SpoVIF ; Stage VI sporulation protein F
Probab=45.28 E-value=86 Score=23.07 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred hhhhHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q FD01848789_005 30 RQGETFRLLNAIKNGLA-NENNINKAINKILDCFYTYIPEKTRGKIYSRI 78 (192)
Q Consensus 30 n~~e~~Rl~~~Ik~gi~-~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~ 78 (192)
...+-..+++-++..-. +++.++++|..+-......+++++.+++.+.+
T Consensus 11 ~~~~i~~la~~v~~~dL~de~~~r~lI~~ls~~~~~~vs~eqe~~iv~~i 60 (72)
T Q81FR3_BACCR/9 11 NKEDIFKLASSVQNANLRDETVLRQLIHQVALMAGREVPKEQEDQIVKAI 60 (72)
T ss_pred CHHHHHHHHhcCCHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
No 5
>6YNX_P ATPTT10; mitochondria, ATP synthase, Fo-subcomplex, IF1 dimer, MEMBRANE PROTEIN; HET: UQ8, PO4, PEE, NAD, CDL, ATP, PC1; 2.5A {Tetrahymena thermophila}
Probab=45.11 E-value=39 Score=28.82 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=0.0 Template_Neff=2.200
Q ss_pred HhCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHH------H
Q FD01848789_005 64 TYIPEKTRGKIYSRI---GGSVAGRAITNSVISGRIATTIAGRSSLYIKFKGGIIG-NILLLGGMTERAIYSS------W 133 (192)
Q Consensus 64 ~~l~~~~~~~i~~k~---~g~~~Gr~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~-~il~igg~~~Raiy~S------r 133 (192)
+-+|++++++|.+-. ....-|-.+++..++-...++|-.-.++-+-+-+++++ ..++.|-..+-++|.| -
T Consensus 20 SlV~~e~q~~i~~l~ngv~s~qN~a~~~s~~lSleavNRi~~~kkl~Iy~raaiV~~~~~~g~r~~~~s~y~~~~~~ei~ 99 (152)
T 6YNX_P 20 SLIEESKQEQIQAIYDKVPQWTNGGRFLGFWLSMEAVNRVQSVAKLPIYYRAGIVATSTLLGGLVSSLVFWKSGNENQVA 99 (152)
T ss_pred eccchHHHHHHHHHHhcCCcccchhhhhhhhHcHHhHHccchHhcCchhhhhhHHhHHHHHHHHHHHhhHHhcCChhHHH
Q ss_pred HHHHHCHHHHHHHcccCCcHHhHHhhh
Q FD01848789_005 134 GLNADCPEIYNLLYPDNLDLLYFLVEP 160 (192)
Q Consensus 134 ~L~~~nP~iY~~Lr~~dLDllYFLvE~ 160 (192)
.|..-.|---++.--..||=+||+++|
T Consensus 100 klldGaPiwenkfDVPELdK~fFfiDD 126 (152)
T 6YNX_P 100 KLANGAPVYLKKWEVPELSKLYFFLDD 126 (152)
T ss_pred HHhcCCchhhcccCCchhhceeEEEcC
No 6
>3AYH_A DNA-directed RNA polymerase III subunit rpc9; Transcription; HET: SO4; 2.193A {Schizosaccharomyces pombe}
Probab=41.85 E-value=2e+02 Score=22.62 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hHHHHHhcccCCc--chhhhhhhHHHHHHHHHhcccChhHHHHHHH----------HHHHHHHHhCCHHHHHHHHHHH
Q FD01848789_005 13 DLVYLTRAVFDTE--NNFKRQGETFRLLNAIKNGLANENNINKAIN----------KILDCFYTYIPEKTRGKIYSRI 78 (192)
Q Consensus 13 dl~yl~~~f~dtd--~r~~n~~e~~Rl~~~Ik~gi~~~~~i~kiI~----------iIi~~f~~~l~~~~~~~i~~k~ 78 (192)
.+.+..++|+..- .+..+...-..+.+.++.....+..+..+++ .++.+...+++++++++|.+-+
T Consensus 54 ~i~~~~~~Yl~~~~~~~~~~~~~~~~~~~~L~~~~Lt~~E~~~iiNl~P~s~~el~~ii~~~~~r~~~e~~~~il~~v 131 (136)
T 3AYH_A 54 TIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKI 131 (136)
T ss_dssp HHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHhhcHHHhCCHHHHHHHHHHH
No 7
>PF08349.15 ; DUF1722 ; Protein of unknown function (DUF1722)
Probab=33.96 E-value=2.9e+02 Score=20.74 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred hhHHHHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01848789_005 32 GETFRLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGRAITNSVIS 93 (192)
Q Consensus 32 ~e~~Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr~~~~~~i~ 93 (192)
.+-.+.+..+-+.........+++..+...|.+.+++++++.+.+.+.....|++-...++.
T Consensus 32 ~~y~~~l~~~l~~~~~~~~~~n~l~~i~~~~~~~l~~~E~~~~~~~i~~y~~~~~~~~~~~~ 93 (117)
T Q3JE26_NITOC/2 32 PTYEAELMSALRRRATRKGHTNVLMHLLGFLRAQLDKADRAELLESMESYRLGLVPLIVPMT 93 (117)
T ss_pred HHHHHHHHHHHcccCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcCCCCHHHHHH
No 8
>5AWF_A FeS cluster assembly protein SufB; Iron-Sulfur Clusters, Iron-Sulfur Proteins, ABC proteins, ABC ATPase, TRANSPORT PROTEIN-PROTEIN BINDING complex; 2.957A {Escherichia coli (strain K12)}
Probab=31.96 E-value=1.9e+02 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred hHHHHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q FD01848789_005 33 ETFRLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGRAI 87 (192)
Q Consensus 33 e~~Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr~~ 87 (192)
|.+-++.+--+|+..++.-+-+|+-++.++.+++|.+.++.+...+..++.|+..
T Consensus 441 d~e~lfYL~SRGi~~~~A~~llv~gf~~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 495 (495)
T 5AWF_A 441 GEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG 495 (495)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcccC
No 9
>4DN7_B ABC transporter, ATP-binding protein; STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGRC, PSI-Biology, New York Structural; HET: MSE, 1PE; 1.6A {Methanosarcina maze}
Probab=31.32 E-value=2.1e+02 Score=27.20 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred hHHHHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q FD01848789_005 33 ETFRLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGR 85 (192)
Q Consensus 33 e~~Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr 85 (192)
|.+-|+.+--+|+..++..+-+++-++..+.+.+|++.++.+.+.+.-.+.|+
T Consensus 377 d~e~lfYL~SRGi~~~~A~~lli~gf~~~~~~~~~~~~~~~~~~~i~~~~~~~ 429 (429)
T 4DN7_B 377 AKDQVEYLMARGLTEDEAVGMIIRGFLDVGIRGIPEELKEEIENTIAQTALGM 429 (429)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGTTSCGGGHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
No 10
>2F5U_A Virion protein UL25; HSV-1, Capsid Protein, DNA packaging, UL25, Head Completion, VIRAL PROTEIN; 2.1A {Human herpesvirus 1}
Probab=28.78 E-value=38 Score=33.80 Aligned_cols=9 Identities=56% Similarity=1.202 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 428 dYD~LYFlv 436 (447)
T 2F5U_A 428 DYDMLYFLC 436 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 11
>PF01706.20 ; FliG_C ; FliG C-terminal domain
Probab=28.77 E-value=61 Score=24.32 Aligned_cols=39 Identities=5% Similarity=0.084 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHCHHHHHHHccc--CCcHHhHHhhhhcHHHHHHHhHHH
Q FD01848789_005 135 LNADCPEIYNLLYPD--NLDLLYFLVEPLMEPFIESMKIRE 173 (192)
Q Consensus 135 L~~~nP~iY~~Lr~~--dLDllYFLvE~~l~PfidAi~i~~ 173 (192)
|++++|+++..++.. .+|=+..+=++.++.++..+....
T Consensus 3 l~~~~p~~a~~i~~~~~~fedl~~l~~~~l~~~l~~~~~~~ 43 (108)
T W0RED5_9BACT/2 3 VSERDASLCEQIKNLMFVFEDLAGLDDKSLQRLLREIEAKQ 43 (108)
T ss_pred hhhhCHHHHHHHHHHCCCHHHHhCCCHHHHHHHHHhCCHHH
No 12
>7DV2_D SegB; DNA BINDING PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN; 3.1A {Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)}
Probab=28.11 E-value=91 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHHHCHHHHHHHcc
Q FD01848789_005 133 WGLNADCPEIYNLLYP 148 (192)
Q Consensus 133 r~L~~~nP~iY~~Lr~ 148 (192)
+.|+++||++|.+...
T Consensus 54 ~~l~~~YPeLw~~v~~ 69 (83)
T 7DV2_D 54 KGLKEMYPTLFTIAEK 69 (83)
T ss_dssp HHHHHHSHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHH
No 13
>PF18689.5 ; PriX ; Primase X
Probab=27.75 E-value=91 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHCHHHHHHHcc
Q FD01848789_005 133 WGLNADCPEIYNLLYP 148 (192)
Q Consensus 133 r~L~~~nP~iY~~Lr~ 148 (192)
..|+++||++|..+.+
T Consensus 78 ~klk~~~~eLY~~i~~ 93 (95)
T F4B8W4_ACIHW/4 78 KKLQEKDPELYEEIRR 93 (95)
T ss_pred HHHHHHCHHHHHHHHH
No 14
>PF14129.10 ; DUF4296 ; Domain of unknown function (DUF4296)
Probab=27.66 E-value=1.9e+02 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHhHHHhhcHHHHHHHHHHHHHhhC
Q FD01848789_005 163 EPFIESMKIRENEGQTAFNELMEIVVDEIK 192 (192)
Q Consensus 163 ~PfidAi~i~~~~g~~~fn~i~~~~~~~i~ 192 (192)
+-|...+.....+ |..|++|.+.|.+.+.
T Consensus 54 ~~f~~s~~~Y~~~-p~~~~~iy~~v~~~L~ 82 (87)
T H1YD22_9SPHI/2 54 AEFKKSLKFYSTR-PDILSEIYAGVNKRLD 82 (87)
T ss_pred HHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
No 15
>7NXP_A Capsid vertex component 2; herpesvirus, capsid, HCMV, assembly, VIRAL PROTEIN; HET: GOL; 1.896A {Human cytomegalovirus}
Probab=27.43 E-value=39 Score=34.09 Aligned_cols=9 Identities=67% Similarity=1.113 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 446 dYD~LYFlv 454 (479)
T 7NXP_A 446 IYELLYFLV 454 (479)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 16
>7ANE_p mS23; Ribosome, Mitochondria, Kinetoplastid; HET: NAD; 3.9A {Leishmania major}
Probab=27.23 E-value=1.4e+02 Score=28.64 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred HHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q FD01848789_005 38 LNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGRAIT 88 (192)
Q Consensus 38 ~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr~~~ 88 (192)
..+.++|+.. ..+|+.|++.|++.+.-++.-...+.--.+++||+++
T Consensus 130 y~Lkr~Gv~H----~~AikkVlq~fY~~laVkkRVaaIQAEEAKLSGkfIT 176 (321)
T 7ANE_p 130 YELERKGVAH----SVAIKRVLQMFYDELTVKKRVAAIQAEEAKLSGKYIS 176 (321)
T ss_pred HHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
No 17
>6SGA_Cb mS23; mitochondrial ribosome, assembly intermediate, translation, RIBOSOME; HET: UBD, PM8; 3.1A {Trypanosoma brucei brucei}
Probab=26.72 E-value=1.3e+02 Score=28.68 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred HHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q FD01848789_005 38 LNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGRAIT 88 (192)
Q Consensus 38 ~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr~~~ 88 (192)
..+.++|+.. ..+|+.|++.|++.+.-++.-...+.--.+++||+++
T Consensus 130 y~Lkr~Gv~H----~~AikkVlq~fY~~laVkkRVaaIQAEEAKLSGkfIT 176 (311)
T 6SGA_Cb 130 YELKRRGVDH----GEAIRKVLQGFYSGLAVKKRVAAIQAEEAKLTGRFIT 176 (311)
T ss_pred HHHHHcCCCH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCcee
No 18
>6PPB_l Capsid vertex component 2; genome, portal, capsid, genome packaging, VIRUS, VIRAL PROTEIN;{Human herpesvirus 8}
Probab=25.88 E-value=45 Score=34.23 Aligned_cols=9 Identities=44% Similarity=0.907 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 530 dYD~LYFlv 538 (549)
T 6PPB_l 530 DYDRAYFMV 538 (549)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 19
>7ETJ_O Capsid vertex component 2; C5 portal vertex, partially-enveloped capsid, VIRAL PROTEIN; 4.0A {Human cytomegalovirus}
Probab=25.50 E-value=47 Score=34.76 Aligned_cols=9 Identities=67% Similarity=1.113 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 624 DYDlLYFlv 632 (642)
T 7ETJ_O 624 IYELLYFLV 632 (642)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 20
>6W2D_w Capsid vertex component 2; gamma-herpesvirus, EBV, CATC, Structural plasticity, VIRAL PROTEIN; 4.0A {Epstein-Barr virus (strain B95-8)}
Probab=25.13 E-value=45 Score=34.38 Aligned_cols=9 Identities=56% Similarity=1.017 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 551 dYD~LYFlv 559 (570)
T 6W2D_w 551 DYDRLYFLT 559 (570)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 21
>PF17447.6 ; YkpC ; Uncharacterized YkpC-like
Probab=25.00 E-value=1.1e+02 Score=20.76 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred HHHHHHHHHHHHHHHHH
Q FD01848789_005 109 KFKGGIIGNILLLGGMT 125 (192)
Q Consensus 109 ~~~~~~~~~il~igg~~ 125 (192)
|+..+++.+.+++|||.
T Consensus 7 Rv~Is~iLsgIIlGGMS 23 (42)
T YKPC_BACSU/2-4 7 RVAIAAILSGIILGGMS 23 (42)
T ss_pred HHHHHHHHHHHHHccch
No 22
>5ZZ8_s UL25; Herpes simplex virus 2, capsid, capsid-vertex-specific component, STRUCTURAL PROTEIN; 3.75A {Human herpesvirus 2}
Probab=24.90 E-value=46 Score=34.44 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 566 dYD~LYFlv 574 (585)
T 5ZZ8_s 566 DYDLLYFLC 574 (585)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 23
>PF03874.20 ; RNA_pol_Rpb4 ; RNA polymerase Rpb4
Probab=24.76 E-value=6.3e+02 Score=21.49 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cccchHHH---HHhcccC--C-cchhhhhhhHHHHHHHHH------hcc--------cChhHHHHHHH----------HH
Q FD01848789_005 9 SVPVDLVY---LTRAVFD--T-ENNFKRQGETFRLLNAIK------NGL--------ANENNINKAIN----------KI 58 (192)
Q Consensus 9 SvP~dl~y---l~~~f~d--t-d~r~~n~~e~~Rl~~~Ik------~gi--------~~~~~i~kiI~----------iI 58 (192)
..|.++.+ ..++|+. . -.+..+...-..+.+.++ ... ..+....++++ .+
T Consensus 57 ~~~~~l~~i~~~tl~Yl~~~~~f~~~~~~e~i~~l~~~L~~~~~~~~~~~~~~~~~~Lt~~E~lqIiNl~P~s~~El~~i 136 (160)
T A0A0D1CVH2_UST 57 KVPENLRTIQYETISSLSQVTKPCAHQTAENIVAFLDELKARGYSIHDSEAKRGGLGLNRSERLQIVNHAPQSVVELHTL 136 (160)
T ss_pred hCchhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHcCCCCCcchhhcCCCCCCHHHHHHHhhcCCCCHHHHHHH
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q FD01848789_005 59 LDCFYTYIPEKTRGKIYSRI 78 (192)
Q Consensus 59 i~~f~~~l~~~~~~~i~~k~ 78 (192)
+.+...+++++++++|.+-+
T Consensus 137 i~~~e~r~~ee~le~IL~~i 156 (160)
T A0A0D1CVH2_UST 137 VEELEERFHPHQIEELIALV 156 (160)
T ss_pred HHhHHhcCCHHHHHHHHHHH
No 24
>6RWT_A Ubiquinol-cytochrome C chaperone; Respiratory chain, Complex III, Assembly factor, Mitochondrial translation, CHAPERONE; HET: GOL; 1.42A {Brucella abortus NCTC 8038}
Probab=24.31 E-value=6.7e+02 Score=21.23 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHccc-CCcHHhHHhhhhcHHHHHHHhHHHhhcHHHHHHHHHHHHHhh
Q FD01848789_005 125 TERAIYSSWGLNADCPEIYNLLYPD-NLDLLYFLVEPLMEPFIESMKIRENEGQTAFNELMEIVVDEI 191 (192)
Q Consensus 125 ~~Raiy~Sr~L~~~nP~iY~~Lr~~-dLDllYFLvE~~l~PfidAi~i~~~~g~~~fn~i~~~~~~~i 191 (192)
..+.+|.+=--+.++|+.|..+.-. ++|--+-++.=++--.+..+.....+|...-+.+++.+-+.+
T Consensus 16 ~a~~ly~~~~~~a~~~~~~~~~~l~dtf~~rf~~~~LH~wl~~~RL~~~~~~~~~l~q~l~d~~~~d~ 83 (184)
T 6RWT_A 16 IVLRVYEVIVAAARQKRFYAQFQVPDTPLGRYEMLSLHIFLALHRMKGENPALNALAQEIADEFFKDV 83 (184)
T ss_dssp HHHHHHHHHHHHHTCGGGTTTTCCCCSHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
No 25
>PF05461.15 ; ApoL ; Apolipoprotein L
Probab=24.24 E-value=8.5e+02 Score=22.43 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CCcchhhhhhhHHHHHHHHHhcccChhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q FD01848789_005 23 DTENNFKRQGETFRLLNAIKNGLANENNINKAINKILDCFYTYIPEKTRGKIYSRIGGSVAGRAITNSVISGRIATTIAG 102 (192)
Q Consensus 23 dtd~r~~n~~e~~Rl~~~Ik~gi~~~~~i~kiI~iIi~~f~~~l~~~~~~~i~~k~~g~~~Gr~~~~~~i~~~i~~~i~~ 102 (192)
|.+.-..-+.+..++....++-....+...+-++.+.+++.+.-..-...++....+|-+.|=+++..++..-+..-..-
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iad~ld~~~k~~~ia~~~g~~~~ivgg~~~i~G~~lap~t~G~sl 118 (298)
T F6VUH9_HORSE/1 39 DKVMIQKDQENTKKFLDKFPQVKRELEERIGKLHALADKVDKVHRDCTISNVVANSTGAVAGVLTFLGLALAPVTAGVSL 118 (298)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHhhhhhHHHHHHHHHHHHHHHHhccchHH
Q ss_pred chhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q FD01848789_005 103 RSSLYIKFKG-GIIGNILLLGGMTERAIYSSWGLNA 137 (192)
Q Consensus 103 ~~~~~~~~~~-~~~~~il~igg~~~Raiy~Sr~L~~ 137 (192)
- +.....+ ++.+++..+|..+......+...++
T Consensus 119 ~--l~~~G~~~g~~g~~~~~~a~i~~~~~~~~~~~~ 152 (298)
T F6VUH9_HORSE/1 119 A--LSATGIGLGAAAGVTTVSTSIVEYSTNSSAKAE 152 (298)
T ss_pred H--HHHHHHHHHHHHHhhhhHHHHHHHHhcHHHHHH
No 26
>7FJ1_c DNA packaging tegument protein UL25; Pseudorabies virus, C-capsid, Cryo-EM, VIRUS; 4.43A {Suid alphaherpesvirus 1}
Probab=23.96 E-value=47 Score=34.04 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCcHHhHHh
Q FD01848789_005 150 NLDLLYFLV 158 (192)
Q Consensus 150 dLDllYFLv 158 (192)
|||++||||
T Consensus 516 dYD~LYFlv 524 (534)
T 7FJ1_c 516 DYDLLYFLC 524 (534)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 27
>PF01785.21 ; Closter_coat ; Closterovirus coat protein
Probab=23.62 E-value=77 Score=27.24 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred ccchHHHHHhcccCCcchhhhhhhHHHHHHHHHh
Q FD01848789_005 10 VPVDLVYLTRAVFDTENNFKRQGETFRLLNAIKN 43 (192)
Q Consensus 10 vP~dl~yl~~~f~dtd~r~~n~~e~~Rl~~~Ik~ 43 (192)
+|....|++.||++.+ .-+|.+|.+.+..+
T Consensus 142 vp~~~~~~a~DF~~~~----~~t~~e~~a~~~ak 171 (194)
T CAPSD_CTV36/27 142 IPAGYHYLCADFLTGA----GLTDLECAVYIQAK 171 (194)
T ss_pred CCCCcccccCCccCcC----CCCHHHHHHHHHHH
No 28
>2YSK_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI; 1.9A {Thermus thermophilus}
Probab=23.03 E-value=6.3e+02 Score=20.46 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred ccchHHHHHhcccCCcchhhhhhhHHHHHHHHHhcccCh---h-HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q FD01848789_005 10 VPVDLVYLTRAVFDTENNFKRQGETFRLLNAIKNGLANE---N-NINKAINKILDCFYTYIPEKTRGKIYSRI 78 (192)
Q Consensus 10 vP~dl~yl~~~f~dtd~r~~n~~e~~Rl~~~Ik~gi~~~---~-~i~kiI~iIi~~f~~~l~~~~~~~i~~k~ 78 (192)
+|.++..+-++-.+-........+...+...|.....-. + .-...+..|+.-..+.+++...+++...+
T Consensus 62 LP~~l~~~~~~~~~~~~~~~~~~~~~ef~~~V~~~~~~~~~~~~~a~~~~~aV~~~l~~~l~~~~~~~l~~~L 134 (145)
T 2YSK_A 62 LPMLVRGLYYEGWDPTGKPLKERHKEAFLAHVAEELKTPSGPAVDPEAATRAVFKVLSREISQGELEDVLGLL 134 (145)
T ss_dssp SCHHHHHHHHTTCCTTSCCCCCCSHHHHHHHHHHTSEETTEESSCHHHHHHHHHHHHHHHSCHHHHHHHHHTS
T ss_pred ccHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHhhC
No 29
>PF05358.15 ; DicB ; DicB protein
Probab=21.78 E-value=1.5e+02 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=0.0 Template_Neff=2.500
Q ss_pred HHHHhHHHhhcHHHHHHHH
Q FD01848789_005 166 IESMKIRENEGQTAFNELM 184 (192)
Q Consensus 166 idAi~i~~~~g~~~fn~i~ 184 (192)
.|||+.++.+ +...|++|
T Consensus 28 EDAInkrK~e-~~lLN~ic 45 (62)
T DICB_ECOLI/1-6 28 EDAINKRKQE-RELLNKIC 45 (62)
T ss_pred hhhHhhhHhC-HHHHHHHH
No 30
>5IZS_F Designed protein 5L6HC3_1; rosetta, de novo design, DE NOVO PROTEIN; 2.36A {synthetic construct}
Probab=21.75 E-value=6.2e+02 Score=20.24 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=0.0 Template_Neff=1.700
Q ss_pred HHHHHCHHHHHHHcccCCcHHhHHhhhhcHHHHHHHhHHHhhcHHHHHHHHHHHHHhhC
Q FD01848789_005 134 GLNADCPEIYNLLYPDNLDLLYFLVEPLMEPFIESMKIRENEGQTAFNELMEIVVDEIK 192 (192)
Q Consensus 134 ~L~~~nP~iY~~Lr~~dLDllYFLvE~~l~PfidAi~i~~~~g~~~fn~i~~~~~~~i~ 192 (192)
+|.++.-+--.+|...|+|++|..+|=.=..=+.----+-+. .-.+|++.-+.+|+
T Consensus 16 ~lar~lLeA~ArLQELNidlv~l~~eLtDp~tiRe~i~~~K~---~SK~IveeAE~eIr 71 (95)
T 5IZS_F 16 ELARKLLEAVARLQELNIDLVRKTSELTDEKTIREEIRKVKE---ESKRIVEEAEEEIR 71 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHhcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 31
>7BQA_B 60 kDa polyprotein; ASFV, core-shell, p35, STRUCTURAL PROTEIN; 2.102A {African swine fever virus}
Probab=20.20 E-value=1.2e+02 Score=29.52 Aligned_cols=27 Identities=30% Similarity=0.622 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred HHHHCHHHHHHHccc-CCcH---HhHHhhhh
Q FD01848789_005 135 LNADCPEIYNLLYPD-NLDL---LYFLVEPL 161 (192)
Q Consensus 135 L~~~nP~iY~~Lr~~-dLDl---lYFLvE~~ 161 (192)
|+..+|++|.++-+. |+|= +|.|+||+
T Consensus 55 l~~~~~~~f~~vLP~ld~~P~v~fYlLlePy 85 (339)
T 7BQA_B 55 LSLNHPTEFIKVLPLIDFDPLVTFYLLLEPY 85 (339)
T ss_dssp HHHHCHHHHHHHGGGCCSSHHHHHHHHHCTT
T ss_pred HHHcChhHHHHHhhhcCCCcccchhhhcccc