Query FD01542924_04489 hypothetical protein
Match_columns 66
No_of_seqs 114 out of 333
Neff 5.25175
Searched_HMMs 86581
Date Mon Feb 26 21:22:22 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4140617.hhr -oa3m ../results/4140617.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6WIN_A Type 6 secretion amidas 99.9 7.9E-24 9.1E-29 140.5 7.7 63 2-65 18-80 (140)
2 3NPF_B putative dipeptidyl-pep 67.9 25 0.00029 24.8 4.3 60 6-66 182-251 (306)
3 PF04489.17 ; DUF570 ; Protein 64.0 5.9 6.8E-05 32.2 0.8 21 23-43 393-420 (424)
4 7PZT_B Urea amidohydrolase; As 61.9 29 0.00033 24.8 3.7 34 24-64 76-111 (160)
5 PF05708.16 ; Peptidase_C92 ; P 57.6 49 0.00056 21.5 4.0 26 34-66 1-43 (190)
6 6LNW_C Accessory secretory pro 50.5 17 0.00019 25.2 1.1 32 18-49 21-54 (154)
7 PF04970.17 ; LRAT ; Lecithin r 47.7 70 0.00081 19.1 3.4 24 33-64 1-24 (132)
8 PF15432.10 ; Sec-ASP3 ; Access 46.3 35 0.0004 22.8 2.1 20 32-51 20-40 (126)
9 4EYZ_B Cellulosome-related pro 39.8 1.5E+02 0.0017 22.3 4.7 38 27-66 157-201 (246)
10 2IO8_A Bifunctional glutathion 38.2 1.7E+02 0.0019 23.4 4.9 54 6-66 58-139 (619)
11 4CGK_A SECRETED 45 KDA PROTEIN 38.0 84 0.00097 22.8 3.1 55 5-66 290-351 (392)
12 2VOB_A TRYPANOTHIONE SYNTHETAS 36.5 1.8E+02 0.0021 23.7 4.9 56 6-66 58-138 (652)
13 2KYT_A Group XVI phospholipase 35.8 1.4E+02 0.0016 17.2 3.4 24 33-64 6-29 (125)
14 7ZOT_B Phospholipase A and acy 34.5 1.5E+02 0.0018 17.1 3.8 30 27-64 3-32 (126)
15 5VAE_F Accessory Sec system pr 32.8 84 0.00096 22.1 2.3 20 32-51 46-66 (159)
16 4DPZ_X HRAS-like suppressor 2; 29.3 2E+02 0.0023 17.1 3.3 24 33-64 6-29 (137)
17 PF12671.11 ; Amidase_6 ; Putat 29.1 2.3E+02 0.0026 19.4 3.9 26 34-66 124-151 (196)
18 8AUC_A Cell wall-associated hy 26.9 1.3E+02 0.0015 24.3 2.7 52 6-66 512-570 (600)
19 2IF6_A Hypothetical protein yi 25.8 3E+02 0.0035 17.8 4.3 27 33-66 3-41 (186)
20 8H02_A DNA-directed RNA polyme 25.5 99 0.0011 16.7 1.4 20 29-48 64-84 (84)
21 8I2E_D Probable peptidoglycan 25.0 3.4E+02 0.0039 18.1 5.4 55 6-66 223-281 (311)
22 4X5P_A Protein FimH; Sugar Bin 24.7 90 0.001 21.0 1.4 10 35-44 120-129 (160)
23 PF09160.14 ; FimH_man-bind ; F 24.7 85 0.00098 20.7 1.2 10 35-44 118-127 (144)
24 3KW0_A Cysteine peptidase; Cys 23.3 3.2E+02 0.0037 18.5 3.8 25 35-66 40-76 (214)
25 PF20590.2 ; DUF6791 ; Domain o 22.1 2.5E+02 0.0029 19.9 3.1 34 29-64 28-62 (152)
No 1
>6WIN_A Type 6 secretion amidase effector 2; amidase, toxin, peptidoglycan hydrolase, ANTIMICROBIAL PROTEIN; HET: MSE; 2.05A {Salmonella typhi}
Probab=99.91 E-value=7.9e-24 Score=140.47 Aligned_cols=63 Identities=49% Similarity=0.916 Sum_probs=59.3 Template_Neff=5.700
Q ss_pred CCCcccHHHHHHhcCCCCCCCcccCccccCCCCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEee
Q FD01542924_044 2 VGDGECVTLVKQYAHLGVTGTWKQGRKVFGDKSIPRGTAIATFVNGKYPAGDAVHKHAAFYLEQ 65 (66)
Q Consensus 2 vg~geCV~lvk~~~~~~~T~~W~~G~~V~~~~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~~ 65 (66)
+|++|||+|||.+++++.|+.|++|.+|+++..|++||+||||.+|+|++ ..+++|||||+++
T Consensus 18 ~g~~eCvalVk~~~~~~~t~~Wr~G~~V~~~~~I~~GTaIATF~~G~Y~~-~~~g~HaaIfl~~ 80 (140)
T 6WIN_A 18 GNHHQCVELIQHYIRVGQASTWQQGAAVFGNKNIEVGTVIATFVNGRYPN-HNSGNHAAFFLGQ 80 (140)
T ss_dssp SSSCCHHHHHHHHSCCCCGGGCEEEEESTTCTTCCTTBEEEECBTTBCCT-TSTTCCEEEEEEE
T ss_pred CCCchHHHHHHHHcCCCCCCcCcccceecCCCCCCCCeEEEEEeCCCCCC-CCCCCeeEEEeee
Confidence 46899999999999999999999999999988999999999999999998 7778999999997
No 2
>3NPF_B putative dipeptidyl-peptidase VI; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: CSA, MSE, GOL; 1.72A {Bacteroides ovatus}
Probab=67.91 E-value=25 Score=24.82 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred ccHHHHHHh-----cCCCCCCC--cccCccccCC---CCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 6 ECVTLVKQY-----AHLGVTGT--WKQGRKVFGD---KSIPRGTAIATFVNGKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 6 eCV~lvk~~-----~~~~~T~~--W~~G~~V~~~---~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~~~ 66 (66)
.|-.||+.+ -.++.... ++.|..|... ..+++|..|.--....... .....|++||++.+
T Consensus 182 dcsg~~~~~~~~~G~~lpr~~~~q~~~g~~v~~~~~~~~~~~GDl~ff~~~~~~~~-~~~~~Hvgi~~g~~ 251 (306)
T 3NPF_B 182 DXSGLVRTVLFMHDIIIPRDASQQAYVGEHIDIAPDFSNVKRGDLVFFGRKATAER-KEGISHVGIYLGNK 251 (306)
T ss_dssp CHHHHHHHHHHTTTEECCSSHHHHTTSSEEECCCTTCTTCCTTCEEEEEECCCSSS-CCEEEEEEEEEETT
T ss_pred ChhHHHHHHHHHCCCcCCCCHHHHHHhcCccCCCCChHHCCCCCEEEeCCcccccc-ccCccEEEEEEcCC
No 3
>PF04489.17 ; DUF570 ; Protein of unknown function (DUF570)
Probab=63.99 E-value=5.9 Score=32.19 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred cccCccccC-------CCCCCCCcEEEE
Q FD01542924_044 23 WKQGRKVFG-------DKSIPRGTAIAT 43 (66)
Q Consensus 23 W~~G~~V~~-------~~~i~~GTaIAT 43 (66)
||+++.++- +--|+.||+||+
T Consensus 393 Wkp~~pLkiTL~S~s~~LiipQGTPIA~ 420 (424)
T UL31_HCMVM/127 393 WRGGEPLKVTLWTRTRSIVIPQGTPIAT 420 (424)
T ss_pred ecCCCCeEEEEEeCCCCeEecCCCceeE
No 4
>7PZT_B Urea amidohydrolase; Asparagine Deamidase, Bacterial Toxin, Effector Protein, Type VI Secretion System, Cys-His Pair, RhoA deamidation, TOXIN; HET: MES; 1.84A {Alcaligenes faecalis}
Probab=61.92 E-value=29 Score=24.80 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred ccCccccCCCCCCCCcEEEEEe--CCcCCCCCCCCCeEEEEEe
Q FD01542924_044 24 KQGRKVFGDKSIPRGTAIATFV--NGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 24 ~~G~~V~~~~~i~~GTaIATF~--~G~Y~~~~~~g~HaaIfl~ 64 (66)
..|..-.....||+|++|.=|+ ++++ -|+||-++
T Consensus 76 ~~g~~W~G~s~iP~G~aIGF~r~~~~~~-------fHaAIsvG 111 (160)
T 7PZT_B 76 AEGRMWDGRNSLPGGKAIGFCRVKGMEF-------FHAAVAVG 111 (160)
T ss_dssp GGSEECCSSSCCCTTCEEEEEETGGGEE-------EEEEEEEE
T ss_pred ccccccCCCCCCCCCcEEEEEEeeCCeE-------EEEEEEeC
No 5
>PF05708.16 ; Peptidase_C92 ; Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
Probab=57.63 E-value=49 Score=21.49 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCCCcEEEEEeC-----------------CcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 34 SIPRGTAIATFVN-----------------GKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 34 ~i~~GTaIATF~~-----------------G~Y~~~~~~g~HaaIfl~~~ 66 (66)
.+++|.+|+.-.. ..| .|++|++..+
T Consensus 1 ~l~~GDii~~~~~~~~~~~~i~~~~~~~~~~~~-------~H~~i~~~~~ 43 (190)
T A2TZ73_9FLAO/1 1 QLNEGDLLFQNTGTDEIDNAIKDVTATAIAKNY-------SHVGIAMQEN 43 (190)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHhcccccCCC-------cEEEEEEEeC
No 6
>6LNW_C Accessory secretory protein Asp3; Complex, TRANSPORT PROTEIN; 2.9A {Streptococcus pneumoniae TIGR4}
Probab=50.51 E-value=17 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred CCCCCcccCccccC-CCCCCCCcEEEEE-eCCcC
Q FD01542924_044 18 GVTGTWKQGRKVFG-DKSIPRGTAIATF-VNGKY 49 (66)
Q Consensus 18 ~~T~~W~~G~~V~~-~~~i~~GTaIATF-~~G~Y 49 (66)
+.+-.+.+...|.- |..+|+|++|.++ ....|
T Consensus 21 GS~I~~~~~~~V~f~N~lmppG~~I~~W~S~~~y 54 (154)
T 6LNW_C 21 GTTVSYYPDKSVRLYNPLLPSGEILKTWFSSVNY 54 (154)
T ss_dssp TCEEEECTTSCEEEECTTCCSSCEEEEEESCCCH
T ss_pred CEEEEEeCCCcEEEEcCCCCCCceeEEEECCCch
No 7
>PF04970.17 ; LRAT ; Lecithin retinol acyltransferase
Probab=47.68 E-value=70 Score=19.10 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEe
Q FD01542924_044 33 KSIPRGTAIATFVNGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 33 ~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~ 64 (66)
..+++|..|.... +.| .|.+||++
T Consensus 1 ~~l~~GD~i~~~~-~~~-------~H~~i~vg 24 (132)
T Q5EAQ3_DANRE/4 1 TYFQRGDLLEVPR-TLF-------THFGIYLG 24 (132)
T ss_pred CCCCCCCEEEEec-ccc-------ceEEEEEC
No 8
>PF15432.10 ; Sec-ASP3 ; Accessory Sec secretory system ASP3
Probab=46.32 E-value=35 Score=22.83 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CCCCCCCcEEEEE-eCCcCCC
Q FD01542924_044 32 DKSIPRGTAIATF-VNGKYPA 51 (66)
Q Consensus 32 ~~~i~~GTaIATF-~~G~Y~~ 51 (66)
|..+|+|++|.++ ....|..
T Consensus 20 N~lmp~G~~I~~W~s~~~y~~ 40 (126)
T Q74L38_LACJO/1 20 NKLMPSGKTLISWSSIANYQA 40 (126)
T ss_pred eCCCCCCcEEEEEECCcchhc
No 9
>4EYZ_B Cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases; Putative protease, hydrolase; HET: MSE, CCS, EDO; 1.383A {Ruminococcus flavefaciens}
Probab=39.85 E-value=1.5e+02 Score=22.26 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred ccccCCCCCCCCcEEEEEeC-------CcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 27 RKVFGDKSIPRGTAIATFVN-------GKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 27 ~~V~~~~~i~~GTaIATF~~-------G~Y~~~~~~g~HaaIfl~~~ 66 (66)
........++||.+|.-+.. +.+.. ... .|++||.+.+
T Consensus 157 ~~~l~sg~l~kGDII~f~~~~~~~~~~~~~~~-~~d-~HvGiywG~~ 201 (246)
T 4EYZ_B 157 EEMLSSGVLQKGDIIWCVDGSVGLGMAGLRTI-ADN-HHIGIYTGNG 201 (246)
T ss_dssp HHHHHTCCCCTTCEEEEEETTTCSHHHHHTSC-CSC-CEEEEECSSS
T ss_pred ccccCccCCCCCCEEEEeCCCccccccccccC-CCC-cEEEEEEeCC
No 10
>2IO8_A Bifunctional glutathionylspermidine synthetase/amidase; Bifunctional glutathionylspermidine synthetase/amidase, LIGASE, HYDROLASE; HET: CYS, ADP; 2.1A {Escherichia coli} SCOP: c.30.1.7, d.142.1.8, d.3.1.15
Probab=38.18 E-value=1.7e+02 Score=23.39 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred ccHHHHHHh---------cCCCCCCCcccCc-------------cccCCCCC--CCCcEEEEEeCC----cCCCCCCCCC
Q FD01542924_044 6 ECVTLVKQY---------AHLGVTGTWKQGR-------------KVFGDKSI--PRGTAIATFVNG----KYPAGDAVHK 57 (66)
Q Consensus 6 eCV~lvk~~---------~~~~~T~~W~~G~-------------~V~~~~~i--~~GTaIATF~~G----~Y~~~~~~g~ 57 (66)
|||.|++.+ ...+....|-... ....+..- |+---|..|..+ .| +
T Consensus 58 QCve~~~r~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~P~~Gdi~v~~~~~~~~~~-------G 130 (619)
T 2IO8_A 58 QCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDT-------G 130 (619)
T ss_dssp CHHHHHHHHHHHHHSEECCCCSSGGGGGGCCEEEEGGGTEEEECEEEETTCSSCCCTTCEEEECSBTTBTTT-------C
T ss_pred HHHHHHHHHHHHHhCCccCCCcchHHHhhcceeEeccCCceeccEEecCCCCCCCccCcEEEEeCCCCCCCC-------c
Q ss_pred eEEEEEeeC
Q FD01542924_044 58 HAAFYLEQD 66 (66)
Q Consensus 58 HaaIfl~~~ 66 (66)
|+||..+.+
T Consensus 131 HvaiV~~v~ 139 (619)
T 2IO8_A 131 HVAIITQLH 139 (619)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEee
No 11
>4CGK_A SECRETED 45 KDA PROTEIN; CELL CYCLE, PEPTIDOGLYCAN, CHAP, CELL DIVISION; HET: PG4; 2.55A {STREPTOCOCCUS PNEUMONIAE}
Probab=38.04 E-value=84 Score=22.76 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred cccHHHHHHh-----cCCCCCCCcccCccccCC--CCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 5 GECVTLVKQY-----AHLGVTGTWKQGRKVFGD--KSIPRGTAIATFVNGKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 5 geCV~lvk~~-----~~~~~T~~W~~G~~V~~~--~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~~~ 66 (66)
++|..++... ...+....|.......+. ...|+.=.|+.|..+.| +|.+|+.+.+
T Consensus 290 ~~c~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~p~~G~i~~~~~~~~-------gHv~~v~~~~ 351 (392)
T 4CGK_A 290 GECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGY-------GHVAVVTAVE 351 (392)
T ss_dssp TSHHHHHHHHCTTSCSSCCSGGGHHHHHHHHTCCEESSCCTTCEEEEECSSS-------CEEEEEEEEE
T ss_pred cchHHHHHHHhccccccCccHHHHHHHHHHcCCCccCCCCCCCEEEecCCCC-------cEEEEEEEEC
No 12
>2VOB_A TRYPANOTHIONE SYNTHETASE; LIGASE; 2.3A {LEISHMANIA MAJOR}
Probab=36.52 E-value=1.8e+02 Score=23.71 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred ccHHHHHHh---cCCCCCCCcccCccccCC----------------------CCCCCCcEEEEEeCCcCCCCCCCCCeEE
Q FD01542924_044 6 ECVTLVKQY---AHLGVTGTWKQGRKVFGD----------------------KSIPRGTAIATFVNGKYPAGDAVHKHAA 60 (66)
Q Consensus 6 eCV~lvk~~---~~~~~T~~W~~G~~V~~~----------------------~~i~~GTaIATF~~G~Y~~~~~~g~Haa 60 (66)
|||.|++.+ .....-..+.....+... ...++|.+|. |..+.+.. .+|+|
T Consensus 58 QCve~~~r~~~~~~g~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~P~~GDiiv-~~~~~~~~----~GHVa 132 (652)
T 2VOB_A 58 QCVEFARRWLLVRKGLLLPDVNWACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLV-YPSTDANP----VGHVG 132 (652)
T ss_dssp CHHHHHHHHHHHHHSEECCCCSSGGGGGGCCEEEETTTCCEEECEEEESSBSSCCCSSEEEE-ECCCSSCT----TCEEE
T ss_pred hHHHHHHHHHHHHcCCCCCCCccHHHHhhcceeeecCCCCeeecEEEeCCCCCCCCCCeEEE-ecCCCCCC----Cccee
Q ss_pred EEEeeC
Q FD01542924_044 61 FYLEQD 66 (66)
Q Consensus 61 Ifl~~~ 66 (66)
|..+.+
T Consensus 133 iV~~v~ 138 (652)
T 2VOB_A 133 TITEVG 138 (652)
T ss_dssp EEEEEC
T ss_pred EEEEec
No 13
>2KYT_A Group XVI phospholipase A2; H-REV107, tumor suppressor, phospholipase, N-terminal domain, HYDROLASE; NMR {Homo sapiens}
Probab=35.78 E-value=1.4e+02 Score=17.17 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEe
Q FD01542924_044 33 KSIPRGTAIATFVNGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 33 ~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~ 64 (66)
..+++|..|...... | .|.+||++
T Consensus 6 ~~l~~Gd~i~~~~~~-~-------~H~gi~~g 29 (125)
T 2KYT_A 6 PEPKPGDLIEIFRPF-Y-------RHWAIYVG 29 (125)
T ss_dssp CSCCTTCEEEEECSS-S-------EEEEEECS
T ss_pred CCCCCCCEEEEecCC-C-------CcEEEEec
No 14
>7ZOT_B Phospholipase A and acyltransferase 4; phospholipase A1/A2, acyltransferase, catalytic domain, soluble domain, cytosolic protein, HYDROLASE; 1.735A {Homo sapiens}
Probab=34.48 E-value=1.5e+02 Score=17.08 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred ccccCCCCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEe
Q FD01542924_044 27 RKVFGDKSIPRGTAIATFVNGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 27 ~~V~~~~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~ 64 (66)
........+++|..|...... | .|.+||++
T Consensus 3 ~~~~~~~~l~~Gd~i~~~~~~-~-------~h~gi~~g 32 (126)
T 7ZOT_B 3 GMASPHQEPKPGDLIEIFRLG-Y-------EHWALYIG 32 (126)
T ss_dssp ------CCCCTTCEEEEECSS-S-------EEEEEEEE
T ss_pred CcCCCCCCCCCCCEEEEeccC-c-------CceEEEEc
No 15
>5VAE_F Accessory Sec system protein Asp3; O-glycosylation bacterial adhesin accessory secretion., CELL ADHESION; HET: MSE; 3.106A {Streptococcus gordonii}
Probab=32.75 E-value=84 Score=22.14 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CCCCCCCcEEEEE-eCCcCCC
Q FD01542924_044 32 DKSIPRGTAIATF-VNGKYPA 51 (66)
Q Consensus 32 ~~~i~~GTaIATF-~~G~Y~~ 51 (66)
|..+|+|++|.++ ....|..
T Consensus 46 N~lmp~G~~I~~W~S~~~yq~ 66 (159)
T 5VAE_F 46 NKLIASGQTIHEWSSSWNYQG 66 (159)
T ss_dssp C-CCCTTCEEEEEESSCSSTT
T ss_pred eCCCCCCceeEEEECCCcccc
No 16
>4DPZ_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, HYDROLASE, TRANSFERASE; 1.25A {Homo sapiens}
Probab=29.28 E-value=2e+02 Score=17.11 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEe
Q FD01542924_044 33 KSIPRGTAIATFVNGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 33 ~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~ 64 (66)
..+++|..|.-.... | .|.+||++
T Consensus 6 ~~l~~Gd~i~~~~~~-~-------~H~~i~~g 29 (137)
T 4DPZ_X 6 PRPRLGDLIEISRFG-Y-------AHWAIYVG 29 (137)
T ss_dssp CCCCTTCEEEEECSS-S-------EEEEEEEE
T ss_pred CCCCCCCEEEEcCCC-C-------CcEEEEEe
No 17
>PF12671.11 ; Amidase_6 ; Putative amidase domain
Probab=29.06 E-value=2.3e+02 Score=19.38 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CCCCCcEEEEE--eCCcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 34 SIPRGTAIATF--VNGKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 34 ~i~~GTaIATF--~~G~Y~~~~~~g~HaaIfl~~~ 66 (66)
.+++|.+|.-- .++.+ .|++|..+.+
T Consensus 124 ~~~~GDvI~~~~~~~~~~-------~H~~iVt~~~ 151 (196)
T A9KQF0_LACP7/4 124 DLALGDVLQFYHSNLGRY-------GHTVMVTATT 151 (196)
T ss_pred CCCCCCEEEEEeCCCCcc-------CeEEEEEeeC
No 18
>8AUC_A Cell wall-associated hydrolases (Invasion-associated proteins); bacterial cell division peptidoglycan hydrolysis, regulatory protein, CELL CYCLE; 3.5A {Corynebacterium glutamicum ATCC 13032}
Probab=26.88 E-value=1.3e+02 Score=24.28 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred ccHHHHHHh---cCC----CCCCCcccCccccCCCCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 6 ECVTLVKQY---AHL----GVTGTWKQGRKVFGDKSIPRGTAIATFVNGKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 6 eCV~lvk~~---~~~----~~T~~W~~G~~V~~~~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~~~ 66 (66)
.|-.|+... .+. .....|..|..|.. ..+.+|..|. |..+.. .|++||++.+
T Consensus 512 dcsGl~~~~~~~~G~~~~~~~~~~~~~g~~v~~-~~~~pGDlvf-~~~~~~-------~Hvgiy~G~g 570 (600)
T 8AUC_A 512 DCSGLTLYAFAGVGISLPHYTGYQYQHGTKVSP-SEMQRGDLIF-YGPGAS-------QHVAIYLGDG 570 (600)
T ss_dssp CHHHHHHHHHGGGTCCCCSCHHHHTTSSEEECG-GGCCTTEEEE-ESGGGC-------SEEEEEEETT
T ss_pred cHHHHHHHHHHhCCCCCCCChHHHHhhCeeeCH-HHCCCCeEEE-ECCCCC-------cEEEEEEcCC
No 19
>2IF6_A Hypothetical protein yiiX; structural genomics, metalloprotein, hypothetical, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; 1.8A {Escherichia coli} SCOP: d.3.1.21
Probab=25.78 E-value=3e+02 Score=17.78 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCCCCcEEEEEeC------------CcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 33 KSIPRGTAIATFVN------------GKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 33 ~~i~~GTaIATF~~------------G~Y~~~~~~g~HaaIfl~~~ 66 (66)
..+++|.+|.+=.+ +.| .|+||++..+
T Consensus 3 ~~l~~GDii~~~~~~~~s~~i~~~~~~~~-------~H~~i~~~~~ 41 (186)
T 2IF6_A 3 WQPQTGDIIFQISRSSQSKAIQLATHSDY-------SHTGMLVMRN 41 (186)
T ss_dssp CCCCTTCEEEECCCSTTHHHHHHHHTSSC-------CEEEEEEEET
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHhCCCC-------cEEEEEEEEC
No 20
>8H02_A DNA-directed RNA polymerase subunit beta'; RNA polymerase, SI3, TRANSCRIPTION; 1.552A {Synechococcus elongatus (strain PCC 7942 / FACHB-805)}
Probab=25.45 E-value=99 Score=16.74 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred ccCCCCCCCCcEEEEE-eCCc
Q FD01542924_044 29 VFGDKSIPRGTAIATF-VNGK 48 (66)
Q Consensus 29 V~~~~~i~~GTaIATF-~~G~ 48 (66)
|.+...|.+|++|+.| ..|+
T Consensus 64 v~~g~~v~~g~~i~~~~~~~~ 84 (84)
T 8H02_A 64 VQDGDKVAAEAILAEVPVSGR 84 (84)
T ss_pred EcCCCEEeCCcEEEEccCCCC
No 21
>8I2E_D Probable peptidoglycan endopeptidase LytE; DL-endopeptidase, ANTIMICROBIAL PROTEIN-INHIBITOR COMPLEX; 3.2A {Bacillus subtilis subsp. subtilis str. 168}
Probab=24.97 E-value=3.4e+02 Score=18.09 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred ccHHHHHHh----cCCCCCCCcccCccccCCCCCCCCcEEEEEeCCcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 6 ECVTLVKQY----AHLGVTGTWKQGRKVFGDKSIPRGTAIATFVNGKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 6 eCV~lvk~~----~~~~~T~~W~~G~~V~~~~~i~~GTaIATF~~G~Y~~~~~~g~HaaIfl~~~ 66 (66)
.|..|+..+ ........-..-.........++|.+|.- +.+ ....+|++||++.+
T Consensus 223 dC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~~~---~~~---~~~~~hv~i~~g~~ 281 (311)
T 8I2E_D 223 DCSGFIWYVLNKQTSVGRTSTAGYWSSMKSIASPSVGDFVFF---TTY---KSGPSHMGIYIGNN 281 (311)
T ss_dssp CHHHHHHHHHHTTSCCCCCCHHHHHHSSEEESSCCTTCEEEE---CCS---SSSCCEEEEEEETT
T ss_pred ChHHHHHHHHHhccCCCCccchHHHhcCcccCCCCCCcEEEe---cCC---CCCCceEEEEEcCC
No 22
>4X5P_A Protein FimH; Sugar Binding Protein, Bacterial Adhesin, Pilus, UPEC, Antagonist Complex, cell adhesion; HET: 3XJ; 0.997A {Escherichia coli K-12} SCOP: b.2.3.2
Probab=24.74 E-value=90 Score=21.01 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCCcEEEEE
Q FD01542924_044 35 IPRGTAIATF 44 (66)
Q Consensus 35 i~~GTaIATF 44 (66)
|++|+.||+|
T Consensus 120 I~aG~~ia~l 129 (160)
T 4X5P_A 120 IKAGSLIAVL 129 (160)
T ss_dssp ECTTCEEEEE
T ss_pred EcCCCEEEEE
No 23
>PF09160.14 ; FimH_man-bind ; FimH, mannose binding
Probab=24.69 E-value=85 Score=20.70 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCCCcEEEEE
Q FD01542924_044 35 IPRGTAIATF 44 (66)
Q Consensus 35 i~~GTaIATF 44 (66)
|++|+.||+|
T Consensus 118 I~~Gd~ia~l 127 (144)
T A8AMS7_CITK8/2 118 INSGELIAQL 127 (144)
T ss_pred EeCCCEEEEE
No 24
>3KW0_A Cysteine peptidase; Cysteine peptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: MSE, LYS; 2.5A {Bacillus cereus}
Probab=23.29 E-value=3.2e+02 Score=18.51 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCCcEEEEEeC------------CcCCCCCCCCCeEEEEEeeC
Q FD01542924_044 35 IPRGTAIATFVN------------GKYPAGDAVHKHAAFYLEQD 66 (66)
Q Consensus 35 i~~GTaIATF~~------------G~Y~~~~~~g~HaaIfl~~~ 66 (66)
+++|.+|+...+ +.| .|+||++..+
T Consensus 40 l~~GDIll~~~~~~~~~~i~~~t~s~~-------sHvaiv~~~~ 76 (214)
T 3KW0_A 40 LKTGDIFLCSGNYLVSKLIKKVSESMF-------SHTGIIVKWG 76 (214)
T ss_dssp CCTTCEEEEEECSHHHHHHHHHTTSSC-------CEEEEEEEET
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHCCCC-------CEEEEEEEeC
No 25
>PF20590.2 ; DUF6791 ; Domain of unknown function (DUF6791)
Probab=22.06 E-value=2.5e+02 Score=19.85 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred ccCCCCCCCCcEEEEE-eCCcCCCCCCCCCeEEEEEe
Q FD01542924_044 29 VFGDKSIPRGTAIATF-VNGKYPAGDAVHKHAAFYLE 64 (66)
Q Consensus 29 V~~~~~i~~GTaIATF-~~G~Y~~~~~~g~HaaIfl~ 64 (66)
|..+..|..|+.|... ..|.--. ... .|.+.|.+
T Consensus 28 vn~~~~V~~G~Lv~~L~l~gd~~~-~P~-~H~~~F~G 62 (152)
T A0A1W2FV04_9PS 28 VTPEREVAYGALACAIGATGDDVL-PPT-DHTMRFVG 62 (152)
T ss_pred eCCCCceeEEEEEEEeeeCCCCcc-CCC-CcEEEEeC