Query FD01845401_00019 hypothetical protein
Match_columns 155
No_of_seqs 38 out of 41
Neff 3.1101
Searched_HMMs 86581
Date Tue Feb 27 19:21:12 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2431267.hhr -oa3m ../results/2431267.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10723.13 ; RepB-RCR_reg ; Re 71.8 14 0.00016 26.7 3.8 29 4-32 48-76 (81)
2 PF11116.12 ; DUF2624 ; Protein 68.0 23 0.00027 25.9 4.3 29 1-29 51-79 (83)
3 PF20394.2 ; DUF6688 ; Family o 47.0 24 0.00028 32.9 1.9 18 8-25 305-322 (365)
4 PF20121.3 ; DUF6511 ; Family o 39.6 1.1E+02 0.0013 24.0 4.2 36 1-42 35-70 (94)
5 PF19620.3 ; DUF6125 ; Family o 37.6 90 0.001 22.5 3.2 27 1-27 22-48 (152)
6 6QLE_Q Inner kinetochore subun 37.4 87 0.001 29.2 3.8 29 3-31 22-57 (261)
7 5YFP_A Exocyst complex compone 35.9 71 0.00082 35.1 3.5 33 7-39 1245-1278(1336)
8 5N5A_A Microtubule-associated 35.3 36 0.00042 21.3 0.8 27 80-106 10-36 (37)
9 4WWR_F Ubiquitin-like protein 31.8 1.3E+02 0.0015 19.8 3.0 28 1-28 15-46 (47)
10 PF18546.5 ; MetOD1 ; Methanoge 30.9 1.8E+02 0.0021 19.9 3.7 29 1-29 13-41 (135)
11 5WUJ_A Flagellar M-ring protei 29.2 1.8E+02 0.002 20.0 3.3 32 1-32 1-37 (37)
12 6QLD_Q Inner kinetochore subun 28.8 1.6E+02 0.0018 27.2 3.9 29 3-31 7-42 (231)
13 PF13708.10 ; DUF4942 ; Domain 28.8 2.5E+02 0.0029 23.9 4.9 40 1-40 42-86 (212)
14 PF18780.5 ; HNH_repeat ; Homin 28.1 99 0.0011 18.2 1.9 39 1-44 1-40 (54)
15 5MP3_C Microtubule-associated 27.5 64 0.00073 17.7 0.9 28 79-106 2-29 (30)
16 3NR1_A HD domain-containing pr 26.9 1E+02 0.0012 23.4 2.2 24 10-33 70-93 (178)
17 PF05298.15 ; Bombinin ; Bombin 26.4 1.9E+02 0.0021 25.1 3.7 29 4-32 55-85 (141)
18 7QOD_A Guanosine polyphosphate 26.0 82 0.00095 25.1 1.6 26 3-28 61-88 (196)
19 8T0P_A Inner kinetochore subun 25.7 2E+02 0.0023 25.1 3.8 29 3-31 44-79 (152)
20 PF14003.10 ; YlbE ; YlbE-like 25.7 2.2E+02 0.0025 20.7 3.4 27 2-28 20-46 (61)
21 PF14005.10 ; YpjP ; YpjP-like 25.6 1.8E+02 0.0021 24.6 3.5 26 7-32 12-37 (134)
22 3MGK_B Intracellular protease/ 25.4 2.1E+02 0.0025 22.0 3.6 40 9-48 165-205 (211)
23 4YF1_A Lmo0812 protein; putati 25.0 76 0.00088 25.5 1.2 26 3-28 62-87 (187)
24 PF14328.10 ; DUF4385 ; Domain 23.4 2.3E+02 0.0027 24.3 3.7 27 2-28 45-81 (144)
25 5J9T_J Chromatin modification- 23.0 5.2E+02 0.006 21.1 5.4 60 3-62 8-75 (113)
26 6Z3N_DDD Hydrolase; Guanosine 23.0 91 0.0011 25.2 1.3 26 3-28 94-119 (205)
27 3CE2_A Putative peptidase; str 23.0 2.9E+02 0.0033 25.5 4.4 57 1-57 328-385 (618)
28 2QR4_B Peptidase M3B, oligoend 22.5 3.1E+02 0.0036 24.9 4.5 57 1-57 296-352 (587)
29 PF07764.15 ; Omega_Repress ; O 22.4 3.5E+02 0.004 19.2 4.0 38 4-41 32-69 (69)
30 PF20680.1 ; DUF6817 ; Domain o 20.7 2.5E+02 0.0029 19.7 3.0 25 8-32 60-84 (85)
31 6XQI_B Protein Vpr; HIV, viral 20.7 3.8E+02 0.0044 20.1 4.0 30 1-31 20-49 (64)
32 PF13467.10 ; RHH_4 ; Ribbon-he 20.6 2.1E+02 0.0024 19.9 2.5 36 3-38 18-53 (63)
33 PF06505.15 ; XylR_N ; Activato 20.6 2.2E+02 0.0025 19.6 2.6 51 1-51 41-95 (101)
34 1W4X_A PHENYLACETONE MONOOXYGE 20.4 7.3E+02 0.0084 22.8 6.3 76 74-149 387-492 (542)
35 8DT0_A Scaffolding protein fun 20.3 1.2E+02 0.0014 25.6 1.6 19 19-37 6-24 (140)
No 1
>PF10723.13 ; RepB-RCR_reg ; Replication regulatory protein RepB
Probab=71.77 E-value=14 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHh
Q FD01845401_000 4 QDGKDALRKIYDKYGKDMSVIVERIFRIE 32 (155)
Q Consensus 4 ~da~~aL~~Iy~kYGkd~A~iVEkmYR~E 32 (155)
.|+++.|+.+...+|..++..||++.+.+
T Consensus 48 ~~~~~~L~~~c~~~g~s~sevie~LI~~~ 76 (81)
T Q93GS8_SALTY/8 48 NIHKESLQQLCEETGTTQAQMIELLIERE 76 (81)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
No 2
>PF11116.12 ; DUF2624 ; Protein of unknown function (DUF2624)
Probab=68.03 E-value=23 Score=25.88 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIF 29 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmY 29 (155)
|+..+-..-|+.|.+..|++.|+.+++||
T Consensus 51 ~~~~~~~~~l~~l~~~~~~~~a~kl~~l~ 79 (83)
T A0A6H3AMF7_BAC 51 YDNDERLELLKQIAKVTSPATAQQVNTLF 79 (83)
T ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
No 3
>PF20394.2 ; DUF6688 ; Family of unknown function (DUF6688)
Probab=47.01 E-value=24 Score=32.94 Aligned_cols=18 Identities=39% Similarity=0.805 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHCHHHHHHH
Q FD01845401_000 8 DALRKIYDKYGKDMSVIV 25 (155)
Q Consensus 8 ~aL~~Iy~kYGkd~A~iV 25 (155)
..+|.+||+||..+|+.|
T Consensus 305 r~iR~~YDr~G~plak~i 322 (365)
T A0A1M6N611_9CL 305 RIIRNFYDKYGFPLSKLI 322 (365)
T ss_pred HHHHHHHHccChhHHHHc
No 4
>PF20121.3 ; DUF6511 ; Family of unknown function (DUF6511)
Probab=39.63 E-value=1.1e+02 Score=24.04 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhhcccccccc
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIFRIETTHFTSGQYQ 42 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmYR~ET~HF~S~QYk 42 (155)
||.+++..-++.|..-|+..|.+++++. ||.+.++.
T Consensus 35 ls~eE~~~fie~vV~gy~~~mr~~~~~~------~~~~~~~~ 70 (94)
T A0A3P1XJQ4_9BU 35 YSESEALCVIDAIVTCWSEAMVAHHEAT------KFQPVRGL 70 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh------CCCCCCCC
No 5
>PF19620.3 ; DUF6125 ; Family of unknown function (DUF6125)
Probab=37.64 E-value=90 Score=22.51 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHH
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVER 27 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEk 27 (155)
|..+.|.+.|+.+..++|+++|+.+.+
T Consensus 22 ~G~~~a~~i~~~~~~~~g~~~~~~~~~ 48 (152)
T A0A0L6JJQ4_9FI 22 YGMDMAIDMDREAWRRFTVIEARRLID 48 (152)
T ss_pred HCHHHHHHhhHHHHHhhhHHHHHHHHH
No 6
>6QLE_Q Inner kinetochore subunit OKP1,Inner kinetochore subunit OKP1,Inner kinetochore subunit OKP1,Inner kinetochore subunit OKP1; inner kinetochore, CCAN, complex, DNA BINDING PROTEIN; 3.55A {Saccharomyces cerevisiae}
Probab=37.39 E-value=87 Score=29.19 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred HHHHHHHHHHHHHHHCHHHHHH-------HHHHHHH
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVI-------VERIFRI 31 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~i-------VEkmYR~ 31 (155)
+.+++.||..|+++|..|+-++ +.++||.
T Consensus 22 E~N~~~Ale~Vf~kY~~El~~v~~~~~~e~~~i~~~ 57 (261)
T 6QLE_Q 22 ETNTVSALDSVFEKYEKEMNQMTHGDNNEVKRIYSK 57 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
No 7
>5YFP_A Exocyst complex component SEC3; exocyst, coiled-coil, EXOCYTOSIS; 4.4A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=35.91 E-value=71 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHH-CHHHHHHHHHHHHHhhhccccc
Q FD01845401_000 7 KDALRKIYDKY-GKDMSVIVERIFRIETTHFTSG 39 (155)
Q Consensus 7 ~~aL~~Iy~kY-Gkd~A~iVEkmYR~ET~HF~S~ 39 (155)
|..|+.|..+| |+||-+.||.||+.=-.||...
T Consensus 1245 Kq~LkkIL~~Y~sKEVkk~le~LykkVeKHfs~e 1278 (1336)
T 5YFP_A 1245 RQNLENILLAYTSHEIETLVKRLHTHMVNDFGYH 1278 (1336)
T ss_dssp CCSSCCCSSCCSSSCTTTTTTSSSSSCSSCSSSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccc
No 8
>5N5A_A Microtubule-associated protein tau; tau, F-actin, protein binding, Alzheimer's disease, structural protein; NMR {N/A}
Probab=35.31 E-value=36 Score=21.32 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cCCCCCCCCCCccccCCCCceEEEeCC
Q FD01845401_000 80 KEGKGLSGQGGNAQVTDKPKQFVVFYS 106 (155)
Q Consensus 80 fE~~GlSg~GGN~Qvt~~~K~fvv~pS 106 (155)
++|..-...|||.||.+++-.|-.++|
T Consensus 10 ~~n~~h~pggg~vqI~~kk~~~s~v~s 36 (37)
T 5N5A_A 10 TENLKHQPGGGKVQIINKKLDLSNVQS 36 (37)
T ss_dssp HHHHHTCSSSSCGGGGGTTCCCCCCCC
T ss_pred ccccCCCCCCCcceeeeecCChhhcCC
No 9
>4WWR_F Ubiquitin-like protein 4A; Endoplasmic Reticulum, Recombinant Proteins, Human, TRANSPORT PROTEIN; 2.0A {Homo sapiens}
Probab=31.78 E-value=1.3e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHH----HHHH
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVI----VERI 28 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~i----VEkm 28 (155)
|+.+||...++...+.|-.-+... ||+|
T Consensus 15 f~~~da~~v~~~f~k~~~~~~~~lsldDiErl 46 (47)
T 4WWR_F 15 FSAADASRVLEQLQRDYERSLSRLTLDDIERL 46 (47)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHh
No 10
>PF18546.5 ; MetOD1 ; Methanogen output domain 1
Probab=30.90 E-value=1.8e+02 Score=19.93 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIF 29 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmY 29 (155)
+..++++..|+.+-.+.|++++..+.+++
T Consensus 13 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~ 41 (135)
T A0A1D3L343_9EU 13 MRIEDTAGFLKEFARFFQSNVHPRFRKEL 41 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 11
>5WUJ_A Flagellar M-ring protein; flagellar motor, MS-ring, C-ring, MOTOR PROTEIN; 2.3A {Helicobacter pylori 26695}
Probab=29.22 E-value=1.8e+02 Score=20.03 Aligned_cols=32 Identities=9% Similarity=0.349 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred CCHHHHH-----HHHHHHHHHHCHHHHHHHHHHHHHh
Q FD01845401_000 1 FTVQDGK-----DALRKIYDKYGKDMSVIVERIFRIE 32 (155)
Q Consensus 1 f~~~da~-----~aL~~Iy~kYGkd~A~iVEkmYR~E 32 (155)
|+++++| +-|+.+-+.-..|||..++.|.+.|
T Consensus 1 fnEde~KYeVLlEki~~~i~e~peEiA~l~q~Li~~e 37 (37)
T 5WUJ_A 1 FSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDE 37 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhcC
No 12
>6QLD_Q Inner kinetochore subunit OKP1; inner kinetochore, DNA, nucleosome, DNA BINDING PROTEIN; 4.15A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=28.83 E-value=1.6e+02 Score=27.18 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHHHHHHHHHHCHHHHHH-------HHHHHHH
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVI-------VERIFRI 31 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~i-------VEkmYR~ 31 (155)
+.++..||..+++||..|+-++ |.++||.
T Consensus 7 E~N~~~Ale~Vf~kY~~El~~v~~~~~~ei~~i~~~ 42 (231)
T 6QLD_Q 7 ETNTVSALDSVFEKYEKEMNQMTHGDNNEVKRIYSK 42 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCC--CCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHH
No 13
>PF13708.10 ; DUF4942 ; Domain of unknown function (DUF4942)
Probab=28.77 E-value=2.5e+02 Score=23.94 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh-----hcccccc
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIFRIET-----THFTSGQ 40 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmYR~ET-----~HF~S~Q 40 (155)
||++.+...|..+.+.-++-+.+.|+.+++.=| ..++|-+
T Consensus 42 Ft~~NI~~~l~~l~~~~~~~~~e~v~~vF~~Ls~~~~~~~yKSN~ 86 (212)
T W0DRZ9_9GAMM/3 42 FNHGNIYAVLSWVFKNANKYFDSQLVDTYERMIEKANIVPYKSNQ 86 (212)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCCCCCCc
No 14
>PF18780.5 ; HNH_repeat ; Homing endonuclease associated repeat
Probab=28.12 E-value=99 Score=18.17 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHhhhcccccccccc
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGK-DMSVIVERIFRIETTHFTSGQYQHC 44 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGk-d~A~iVEkmYR~ET~HF~S~QYk~c 44 (155)
+|.++..++|+.+.++.|. .....+. +...+.+..|..+
T Consensus 1 ~t~e~l~~~l~~~~~~~g~~p~~~~~~-----~~~~~~~~~~~~~ 40 (54)
T A0A1I6L2K7_9EU 1 LSRDDIIQEIQRVAAELGQVPTVADMS-----SEGQYSVDVAQSK 40 (54)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHH-----HhCCCCHHHHHHH
No 15
>5MP3_C Microtubule-associated protein; Antibody Fab, complex, tau protein, immune system; HET: PCA; 2.75A {Mus musculus}
Probab=27.45 E-value=64 Score=17.71 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred ccCCCCCCCCCCccccCCCCceEEEeCC
Q FD01845401_000 79 KKEGKGLSGQGGNAQVTDKPKQFVVFYS 106 (155)
Q Consensus 79 afE~~GlSg~GGN~Qvt~~~K~fvv~pS 106 (155)
.++|......|||.|+.+++-.+-...|
T Consensus 2 s~~n~~~~pggg~v~i~~~k~~~~~v~s 29 (30)
T 5MP3_C 2 SKDNIKHVPGGGSVQIVYKPVDLSKVTS 29 (30)
T ss_pred CcccccCCCCCCCeEEeCcCcChhhcCC
No 16
>3NR1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (Histidine and Aspartic acid) family, ppGpp hydrolase, hydrolase; 1.9A {Homo sapiens}
Probab=26.91 E-value=1e+02 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHhh
Q FD01845401_000 10 LRKIYDKYGKDMSVIVERIFRIET 33 (155)
Q Consensus 10 L~~Iy~kYGkd~A~iVEkmYR~ET 33 (155)
+..|.+.+|+++|.+|+.+-+.++
T Consensus 70 ~~~i~~~fg~~v~~~v~~l~~~~~ 93 (178)
T 3NR1_A 70 LDEVELHFGAQVRRLVEEVTDDKT 93 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHCHHHHHHHHHHcCCCC
No 17
>PF05298.15 ; Bombinin ; Bombinin
Probab=26.37 E-value=1.9e+02 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=0.0 Template_Neff=1.800
Q ss_pred HHHHHHHHHHHHHH--CHHHHHHHHHHHHHh
Q FD01845401_000 4 QDGKDALRKIYDKY--GKDMSVIVERIFRIE 32 (155)
Q Consensus 4 ~da~~aL~~Iy~kY--Gkd~A~iVEkmYR~E 32 (155)
.+-+-+++.+...| ||..|+-=|.|=|+|
T Consensus 55 ~alkglaK~lA~~~angKRTAEehEvmKRLE 85 (141)
T M6HV_BOMMX/1-1 55 SALKGLAKGLAEHFANGKRTAKGHEVMKRLE 85 (141)
T ss_pred HHHHHHHHHHHHHHHcCcccHHHHHHHHHHH
No 18
>7QOD_A Guanosine polyphosphate pyrophosphohydrolases/synthetases; HYDROLASE, Alarmone, Stress response, HD domain; HET: PG4; 1.85A {Corynebacterium glutamicum ATCC 13032}
Probab=25.98 E-value=82 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHH--HHHHHHHHHHCHHHHHHHHHH
Q FD01845401_000 3 VQDGK--DALRKIYDKYGKDMSVIVERI 28 (155)
Q Consensus 3 ~~da~--~aL~~Iy~kYGkd~A~iVEkm 28 (155)
.+|.. ..+..|.+.+|+++|.+|+.+
T Consensus 61 ~ed~~~~~~~~~i~~~fg~~v~~iv~~l 88 (196)
T 7QOD_A 61 LEDVPEEYNSAQLEADFGPRVRELVEEL 88 (196)
T ss_dssp HHHCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcCCHHHHHHHHCHHHHHHHHHh
No 19
>8T0P_A Inner kinetochore subunit OKP1; Okp1, Cse4, Ame1, Kinetochore, CELL CYCLE; HET: SO4; 1.73A {Saccharomyces cerevisiae}
Probab=25.71 E-value=2e+02 Score=25.07 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHHHHHHHHHHHHCHHHHHH-------HHHHHHH
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVI-------VERIFRI 31 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~i-------VEkmYR~ 31 (155)
+.++..||..+++||..|+-++ |.++++.
T Consensus 44 E~N~~~Ale~vF~kY~~El~~v~~~~~~ei~~i~~~ 79 (152)
T 8T0P_A 44 ETNTVSALDSVFEKYEKEMNQMTHGDNNEVKRIYSK 79 (152)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHH
No 20
>PF14003.10 ; YlbE ; YlbE-like protein
Probab=25.66 E-value=2.2e+02 Score=20.71 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHH
Q FD01845401_000 2 TVQDGKDALRKIYDKYGKDMSVIVERI 28 (155)
Q Consensus 2 ~~~da~~aL~~Iy~kYGkd~A~iVEkm 28 (155)
++++-++-.+.....||+.+...||++
T Consensus 20 ~P~~~~~f~~e~k~~~~~t~~dki~k~ 46 (61)
T N0AWX2_9BACI/1 20 NPHELQLLEISSMHHYKKTFPHQVEKF 46 (61)
T ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHHH
No 21
>PF14005.10 ; YpjP ; YpjP-like protein
Probab=25.64 E-value=1.8e+02 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHh
Q FD01845401_000 7 KDALRKIYDKYGKDMSVIVERIFRIE 32 (155)
Q Consensus 7 ~~aL~~Iy~kYGkd~A~iVEkmYR~E 32 (155)
+.|.+.-+.|+|+.|+..||.-|+.+
T Consensus 12 ~~A~~q~~~KfG~kI~~~I~~ef~~~ 37 (134)
T G2TMG2_WEICA/5 12 EDAEKRAYLKFGERIRPVIEDEFRTA 37 (134)
T ss_pred HHHHHHHHHhhchhhHHHhhHHHHHh
No 22
>3MGK_B Intracellular protease/amidase related enzyme (ThiJ family); AMIDOTRANFERASE-LIKE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NYSGRC, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, New; 2.0A {Clostridium acetobutylicum} SCOP: c.23.16.0, l.1.1.1
Probab=25.37 E-value=2.1e+02 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHhh-hccccccccccCCCc
Q FD01845401_000 9 ALRKIYDKYGKDMSVIVERIFRIET-THFTSGQYQHCGAPG 48 (155)
Q Consensus 9 aL~~Iy~kYGkd~A~iVEkmYR~ET-~HF~S~QYk~cGt~G 48 (155)
+|..|...+|.++|..+.+...... .-+.+.||...+..+
T Consensus 165 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (211)
T 3MGK_B 165 TLGFIEDLIGKEKALEISRSIEYFWNEDSNYDPFSKIYGEG 205 (211)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTCCCCCCCSCCGGGTTC---
T ss_pred HHHHHHHHHCHHHHHHHHHHhcccCCCCCCCCCchhhcCCC
No 23
>4YF1_A Lmo0812 protein; putative pyrophosphohydrolase, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE; HET: FLC, MSE; 1.85A {Listeria monocytogenes serovar 1/2a}
Probab=24.96 E-value=76 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHH
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVIVERI 28 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~iVEkm 28 (155)
.+|....+..|.+.+|+++|.+|+.+
T Consensus 62 ~ed~~~~~~~i~~~fG~~v~~lV~~l 87 (187)
T 4YF1_A 62 VEDTEMTDADIRATFGDEVADLVASH 87 (187)
T ss_dssp HHHSSCCHHHHHHHHCHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHCHHHHHHHHHH
No 24
>PF14328.10 ; DUF4385 ; Domain of unknown function (DUF4385)
Probab=23.42 E-value=2.3e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred CHHHHHHHHHHHHHHH----------CHHHHHHHHHH
Q FD01845401_000 2 TVQDGKDALRKIYDKY----------GKDMSVIVERI 28 (155)
Q Consensus 2 ~~~da~~aL~~Iy~kY----------Gkd~A~iVEkm 28 (155)
|++-|+++-..|+++| |-|||+..=+|
T Consensus 45 t~~~A~~Ss~~i~~~F~~Y~~~~DFVGmDMARKfLQM 81 (144)
T K9UGF5_CHAP6/5 45 TPDIACKSASEIYTLFLNYKERGDFVGMDMARKFLQM 81 (144)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHc
No 25
>5J9T_J Chromatin modification-related protein EAF6; NuA4, nucleosome, histone, acetylation, TRANSFERASE; HET: ALY; 2.7A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=23.01 E-value=5.2e+02 Score=21.14 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHHHHHHHCH---HHHHHHHHHHHHhhhcccccc----ccccCCCcceecC-CCCCCCCCh
Q FD01845401_000 3 VQDGKDALRKIYDKYGK---DMSVIVERIFRIETTHFTSGQ----YQHCGAPGMEVHG-SPPAYGWSS 62 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGk---d~A~iVEkmYR~ET~HF~S~Q----Yk~cGt~GMEa~g-~~PyYGW~~ 62 (155)
.++++..|+.+.++--+ +++.+=-+||..||..|...+ +.+.|.+|--+.. ..---||+.
T Consensus 8 ~~~~~~eL~~ll~~r~~l~~eL~~lE~~Iy~~Et~YL~~t~~~~~~~~~~~~~~~~~~~GNiikG~e~ 75 (113)
T 5J9T_J 8 YEALKAELKKSLQDRREQEDTFDNLQQEIYDKETEYFSHNSNNNHSGHGGAHGSKSHYSGNIIKGFDT 75 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------------------CCCBTTTBSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccCCccccCCCeecchhh
No 26
>6Z3N_DDD Hydrolase; Guanosine pentaphosphate phosphohydrolase, HYDROLASE, small alarmone, ppGpp; HET: MSE; 1.58A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}
Probab=23.01 E-value=91 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHH
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVIVERI 28 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~iVEkm 28 (155)
.+|....+..|.+.+|+++|.+|+.|
T Consensus 94 ~e~~~~~~~~i~~~fg~~v~~lv~~l 119 (205)
T 6Z3N_DDD 94 LEDTATSPEELRQQFGEFVCAGVQAL 119 (205)
T ss_pred HccCCCCHHHHHHHHCHHHHHHHHHH
No 27
>3CE2_A Putative peptidase; structural genomics, UNKNOWN FUNCTION, putative peptidase, PSI-2, Protein Structure Initiative, New York SGX Research Center for; 2.6A {Chlamydophila abortus}
Probab=23.00 E-value=2.9e+02 Score=25.46 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHhhhccccccccccCCCcceecCCCCC
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIF-RIETTHFTSGQYQHCGAPGMEVHGSPPA 57 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmY-R~ET~HF~S~QYk~cGt~GMEa~g~~Py 57 (155)
|+.+++...+..++...|.+++..+.+|+ ...--.+....-+.+|.--.-..+..|.
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iD~~~r~~k~~~~~~~~~~~~~~~ 385 (618)
T 3CE2_A 328 YTFQEAVDLIYTSLSPLGTEYIDTLKQGLTTQGWVDKYENLNKRSGAYSSGCYDSHPY 385 (618)
T ss_dssp CCHHHHHHHHHHHTGGGHHHHHHHHHHHHHTSCCEECSCCTTCCCSCEEECCTTSCCE
T ss_pred cCHHHHHHHHHHHcchhCHHHHHHHHHHhhhcCceeeccCCCCCCCccccCCCCCCcE
No 28
>2QR4_B Peptidase M3B, oligoendopeptidase F; structural genomics, oligoendopeptidase F, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; HET: MSE; 2.5A {Enterococcus faecium}
Probab=22.48 E-value=3.1e+02 Score=24.87 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhhccccccccccCCCcceecCCCCC
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIFRIETTHFTSGQYQHCGAPGMEVHGSPPA 57 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmYR~ET~HF~S~QYk~cGt~GMEa~g~~Py 57 (155)
|+.+++.+.+..+++..|.+++.++.+|+..-.-++....-+.+|.-..-..+..|+
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~id~~~~~~k~~~~~~~~~~~~~~~ 352 (587)
T 2QR4_B 296 FTYEEAKEKALEALKPMGEEYMAIVEKAFSERWIDVVENKGKRSGAYSSGSYDTNPY 352 (587)
T ss_dssp ------CTHHHHHTGGGCHHHHC----------------------------------
T ss_pred eCHHHHHHHHHHHhhccCHHHHHHHHHHHhcCCeeeccCCCCCCCccccCCCCCCcE
No 29
>PF07764.15 ; Omega_Repress ; Omega Transcriptional Repressor
Probab=22.38 E-value=3.5e+02 Score=19.20 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhhccccccc
Q FD01845401_000 4 QDGKDALRKIYDKYGKDMSVIVERIFRIETTHFTSGQY 41 (155)
Q Consensus 4 ~da~~aL~~Iy~kYGkd~A~iVEkmYR~ET~HF~S~QY 41 (155)
+|...+|+.+..+-|..|..+|++.-+..-.+-.+.+|
T Consensus 32 ~~l~~~lk~~A~~~g~s~~eii~eAl~~~l~~~~~~~~ 69 (69)
T T0VBY9_9ENTE/1 32 ADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL 69 (69)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCC
No 30
>PF20680.1 ; DUF6817 ; Domain of unknown function (DUF6817)
Probab=20.75 E-value=2.5e+02 Score=19.66 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHh
Q FD01845401_000 8 DALRKIYDKYGKDMSVIVERIFRIE 32 (155)
Q Consensus 8 ~aL~~Iy~kYGkd~A~iVEkmYR~E 32 (155)
..+..|.+.+|++++.+|..+-|+.
T Consensus 60 ~~~~~i~~~~G~~v~~lv~~~~~l~ 84 (85)
T A0A291QLQ1_9AC 60 DRRERARAVIGPEAESLVYLYASCD 84 (85)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHcCC
No 31
>6XQI_B Protein Vpr; HIV, viral accessory protein, hHR23A, human, VIRAL PROTEIN; 2.34A {Human immunodeficiency virus type 1 group M subtype B (isolate NY5)}
Probab=20.70 E-value=3.8e+02 Score=20.14 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIFRI 31 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmYR~ 31 (155)
|+..=--.--+.||+.||...+ .||++.|.
T Consensus 20 Fpr~~L~~lgq~iye~~gdtw~-g~~~~iri 49 (64)
T 6XQI_B 20 FPRIWLHNLGQHIYETYGDTWA-GVEAIIRI 49 (64)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCcHH-HHHHHHHH
No 32
>PF13467.10 ; RHH_4 ; Ribbon-helix-helix domain
Probab=20.58 E-value=2.1e+02 Score=19.86 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhhcccc
Q FD01845401_000 3 VQDGKDALRKIYDKYGKDMSVIVERIFRIETTHFTS 38 (155)
Q Consensus 3 ~~da~~aL~~Iy~kYGkd~A~iVEkmYR~ET~HF~S 38 (155)
+++--+||+.|..+-|..++..|.++.+.-..+|+|
T Consensus 18 E~~~W~~L~~iA~~~~~s~~~lv~~i~~~~~~~l~s 53 (63)
T Q2RS87_RHORT/1 18 EEPFWDALKDLAKARGQSVNDMVTEIDAGRSGNLSS 53 (63)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHH
No 33
>PF06505.15 ; XylR_N ; Activator of aromatic catabolism
Probab=20.55 E-value=2.2e+02 Score=19.63 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHhhhccccccccccCCCccee
Q FD01845401_000 1 FTVQDGKDALRKIYDKYGKDMSVIVERIF----RIETTHFTSGQYQHCGAPGMEV 51 (155)
Q Consensus 1 f~~~da~~aL~~Iy~kYGkd~A~iVEkmY----R~ET~HF~S~QYk~cGt~GMEa 51 (155)
+..+-|+..|...-.++|+.+|+.+.+.+ +.|--...+..+...|-|-++.
T Consensus 41 ~G~~~~~~~ly~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GwG~~~i 95 (101)
T B9M8I2_GEODF/1 41 LGMERVQGLLTRMGYAAGMHDAELARTRFEGASDMELFMTGPKLHMLEGEVKVTP 95 (101)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHhHHHHHHHhcceEEEEE
No 34
>1W4X_A PHENYLACETONE MONOOXYGENASE; BAEYER-VILLIGER, MONOOXYGENASE, FAD, OXYGENASE; HET: FAD; 1.7A {THERMOBIFIDA FUSCA} SCOP: c.3.1.5
Probab=20.37 E-value=7.3e+02 Score=22.84 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred ceeecccC---CCCCCCCCCc---------------cccCCCCceEEEeC------------CcHHHHHHHHHHHHHcCC
Q FD01845401_000 74 TGIWSKKE---GKGLSGQGGN---------------AQVTDKPKQFVVFY------------SVESSMEYIVHYINKHSG 123 (155)
Q Consensus 74 ~G~w~afE---~~GlSg~GGN---------------~Qvt~~~K~fvv~p------------SV~agM~y~a~yI~~ynG 123 (155)
+|.|..+. ..++.|.+|. .++++-|--|++-- +++.-.+|+|+.|..-..
T Consensus 387 tG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~p~~f~~~~p~~~~~~~~~~~~~e~~~~~i~~~~~~~~~ 466 (542)
T 1W4X_A 387 TGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFK 466 (542)
T ss_dssp CCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCcchhcCcccCCCCccHHHhhccCCccchhhccCCCCceEEeeCCCCcchhhHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred CccccccCCHHHHHHHHHHHHhchhh
Q FD01845401_000 124 NYSWWYSTQESAQKLYRKECGAIIPK 149 (155)
Q Consensus 124 N~aRW~s~d~~~Q~~Yr~~l~~i~~r 149 (155)
+-.+--....++|+.+.+.++.+..+
T Consensus 467 ~~~~~~~~~~~a~~~w~~~~~~~~~~ 492 (542)
T 1W4X_A 467 NGLTRSEAVLEKEDEWVEHVNEIADE 492 (542)
T ss_dssp TTCCCEEECHHHHHHHHHHHHHHHTT
T ss_pred CCccEEecCHHHHHHHHHHHHHHHhc
No 35
>8DT0_A Scaffolding protein functional sites; DE NOVO DESIGN, Scaffolding protein functional sites, deep learning, DE NOVO PROTEIN; 2.46A {synthetic construct}
Probab=20.31 E-value=1.2e+02 Score=25.57 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHhhhccc
Q FD01845401_000 19 KDMSVIVERIFRIETTHFT 37 (155)
Q Consensus 19 kd~A~iVEkmYR~ET~HF~ 37 (155)
.++|+.+|++.|.|.+|.+
T Consensus 6 eelakelekilrdeeghlr 24 (140)
T 8DT0_A 6 EELAKELEKILRDEEGHLR 24 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHH