Query FD01846342_04434 DUF2778 domain-containing protein
Match_columns 168
No_of_seqs 117 out of 329
Neff 5.85147
Searched_HMMs 86581
Date Mon Feb 26 21:18:47 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2094072.hhr -oa3m ../results/2094072.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7UO8_A Tlde1a; Type VI secreti 100.0 9.5E-32 1.1E-36 213.5 16.0 162 1-168 4-171 (174)
2 PF10908.12 ; Tlde1_dom ; Tlde1 99.7 3.4E-16 4E-21 117.6 7.4 108 16-143 2-116 (127)
3 8IKR_A YkuD domain-containing 97.2 0.0037 4.3E-08 53.2 8.7 108 3-155 39-155 (236)
4 PF13645.10 ; YkuD_2 ; L,D-tran 96.9 0.034 3.9E-07 43.6 10.7 111 2-155 35-170 (171)
5 6RLG_B L,D-transpeptidase 2; b 96.2 0.14 1.6E-06 43.9 10.5 114 2-162 204-331 (355)
6 7KGM_A Putative exported prote 96.1 0.09 1E-06 50.8 10.1 108 2-157 341-538 (575)
7 5BMQ_A ErfK/YbiS/YcfS/YnhG fam 96.1 0.15 1.7E-06 41.3 9.8 93 2-155 130-236 (243)
8 7KEM_A L,D-transpeptidase 2; T 96.0 0.27 3.1E-06 43.0 11.5 118 2-165 257-390 (408)
9 7AJO_A L,D-transpeptidase YcbB 95.8 0.055 6.4E-07 51.0 7.2 113 2-157 279-471 (523)
10 8DA2_A L,D-transpeptidase fami 95.7 0.17 1.9E-06 46.6 9.6 111 2-156 264-392 (393)
11 1ZAT_A L,D-transpeptidase; L, 95.6 0.21 2.4E-06 40.9 9.0 98 2-155 131-249 (250)
12 4XZZ_A Conserved hypothetical 95.5 0.31 3.6E-06 42.4 10.1 110 3-155 91-209 (339)
13 4LPQ_A ErfK/YbiS/YcfS/YnhG fam 95.3 0.21 2.5E-06 37.8 7.5 105 2-155 90-206 (207)
14 6XJ6_A Pgp2; peptidase, LD-car 95.2 0.2 2.4E-06 41.9 7.8 97 16-156 55-160 (287)
15 7O21_A Uncharacterized conserv 95.0 0.28 3.3E-06 42.2 8.1 110 3-155 55-175 (324)
16 4XVO_C L,D-transpeptidase; L, 94.8 0.83 9.5E-06 36.6 9.9 109 2-157 101-223 (223)
17 8QZG_1 YkuD domain-containing 94.0 1.2 1.4E-05 40.7 10.1 101 5-142 125-256 (328)
18 6V45_A Probable carnitine oper 93.9 2.6 3E-05 34.2 11.1 114 3-155 85-208 (209)
19 PF03734.18 ; YkuD ; L,D-transp 92.8 2.1 2.4E-05 31.8 8.3 100 2-155 6-143 (143)
20 PF18925.4 ; DUF5675 ; Family o 91.4 0.81 9.4E-06 35.3 4.8 55 34-133 35-99 (125)
21 6D4K_A Probable L,D-transpepti 91.3 5.2 6E-05 34.7 10.1 109 2-157 121-261 (261)
22 4A1K_A PUTATIVE L, D-TRANSPEPT 89.2 1.4 1.7E-05 32.2 4.4 43 110-157 117-165 (165)
23 3ZG4_A ERFK/YBIS/YCFS/YNHG; TR 88.7 10 0.00012 26.7 9.4 103 2-155 10-128 (129)
24 4Z7A_A Mycobacterium tuberculo 85.1 2.6 2.9E-05 38.5 4.4 40 112-156 337-384 (451)
25 4LZH_A L,D-transpeptidase; str 84.6 3.4 4E-05 35.6 4.8 42 112-158 168-215 (285)
26 6D5A_A L,D-transpeptidase 5; L 84.0 3.3 3.8E-05 36.6 4.5 41 111-156 308-356 (388)
27 5E5L_D L,D-transpeptidase 1; P 74.1 12 0.00014 30.2 4.5 41 111-156 174-222 (223)
28 3VYP_A Probable conserved lipo 73.6 14 0.00017 30.9 5.0 46 112-162 192-245 (269)
29 4XXT_A Fusion of predicted Zn- 57.9 16 0.00018 29.4 2.3 27 112-138 209-252 (261)
30 PF09885.13 ; DUF2112 ; Unchara 32.7 1.1E+02 0.0013 25.5 3.4 36 119-160 88-125 (143)
31 PF05037.17 ; DUF669 ; Protein 29.8 85 0.00098 23.8 2.2 19 30-48 4-23 (130)
32 PF20374.2 ; DUF6669 ; Family o 21.3 1.3E+02 0.0015 24.2 1.9 12 37-48 122-133 (156)
33 PF17878.5 ; ssDBP ; Single-str 20.4 1.6E+02 0.0019 20.8 2.0 13 35-47 44-57 (72)
34 1GVP_A GENE V PROTEIN; DNA-BIN 20.1 1.6E+02 0.0019 21.4 2.0 14 35-48 51-65 (87)
No 1
>7UO8_A Tlde1a; Type VI secretion system, Salmonella Typhimurium, L, D-carboxypeptidase, D-transpeptidase, peptidoglycan, TOXIN; HET: MED, CME; 1.6A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=100.00 E-value=9.5e-32 Score=213.55 Aligned_cols=162 Identities=94% Similarity=1.586 Sum_probs=123.9 Template_Neff=8.300
Q ss_pred CcEeCCCeEEEecCceEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCC---Ccc-ccccccCCccccceecCC
Q FD01846342_044 1 RLTFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEA---PIR-NAADCDLGPSWGWSTIPR 75 (168)
Q Consensus 1 ~l~FdG~~L~~~~~G~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~---~~~-~~~~~~~~~~~gi~~~~~ 75 (168)
.|.|||++|.|+..++|+|+||++++|+++.|.+++ | ||||.|+|.+ .. ... ....+.+.+.+||+.+..
T Consensus 4 ~l~f~G~~L~~~~~g~~~A~SG~~~~~~~~~q~~~~~G-IP~G~Y~i~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~ 78 (174)
T 7UO8_A 4 RLTFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPDAA-IPEGNYKLFI----QFQGEAPIRNAADCDLGPSWGWSTIPR 78 (174)
T ss_dssp EEEECSSEEEETTTEEEEEEESCTTCCSGGGTTSTTSS-CCSEEEEEEC----CEEEECCEEETTTTEECCCSSEEECCC
T ss_pred EEEECCcEEEEeCCceEEeecCCcccCChhhcccCCCC-CCCceeEEEe----ccCCCcccccccccccCccccceecCC
Confidence 478999999998733999999999999999999999 9 9999999988 33 111 011224456677887654
Q ss_pred CCCCCCcccccccCccceEEeEecCC-CCCccCCCCcCCEEEeCCCCCCCcceeecchhHHHHHHHhhcccCCCceEEEE
Q FD01846342_044 76 GQAAGTCEICWANWGYNRIRLESADE-KTRKACGGKRGGFYIHDSTKGYSHGCIEVEPVFFRILKQETEKENGEKTFTVN 154 (168)
Q Consensus 76 ~~~~g~~~~~~~~WG~~Rv~L~P~~~-t~t~~~~~gR~gFyiHGg~~~gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~ 154 (168)
....|.+.....+||.+|++|+|.+. +++ .+..+|++||||||..++|+|||++...||+.|+++..+..+++.|.|+
T Consensus 79 ~~~~g~~~~~~~~WG~~r~~L~p~~~~~~t-~~~~~R~gF~iHgg~~~gS~GCI~i~~~~~~~l~~~~~~~~~~~~i~l~ 157 (174)
T 7UO8_A 79 GQAAGTCEIYWANWGYNRIRLESADEKTRK-ACGGKRGGFYIHDSTKGYSHGCIEVEPVFFRILKQETEKENGEKTFTVN 157 (174)
T ss_dssp GGGGGGGHHHHTTTCSEEEEEEECSHHHHH-GGGGCCCCCEEECCCSSCCSSSEEECTHHHHHHHHHHTTCCSCCEEEEE
T ss_pred CCCCCCceeeccccceeeEEeeeCCCCCcc-ccCCcccceEECCCCCCCCcccceeChHHHHHHHHHhchhcCCccEEEE
Confidence 21110012234699999999999853 222 2222799999999999999999999999999998887622246689999
Q ss_pred EEcCCCCCccCCCC
Q FD01846342_044 155 VKYVSGQQTNGGTK 168 (168)
Q Consensus 155 V~Y~~~~~t~g~t~ 168 (168)
|+|+...+|+|+|.
T Consensus 158 V~Y~~~~~t~~~~~ 171 (174)
T 7UO8_A 158 VKYVSGQQTNGGTK 171 (174)
T ss_dssp ECCCSCSCSCCSCS
T ss_pred EEcCCCCccCCcee
Confidence 99999889999884
No 2
>PF10908.12 ; Tlde1_dom ; Tlde1 domain
Probab=99.66 E-value=3.4e-16 Score=117.62 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=68.5 Template_Neff=9.100
Q ss_pred eEEeecCCCccC-CchhcCCCC-CCCCCEEEEEecccCCCC-CccccccccCCccccceecCCCCCCCCcccccccCccc
Q FD01846342_044 16 IFKATTGLPDLQ-WPDKQCVPD-AAIPEGNYKLFIQFQGEA-PIRNAADCDLGPSWGWSTIPRGQAAGTCEICWANWGYN 92 (168)
Q Consensus 16 ~~~A~SG~p~~q-~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~~~~~g~~~~~~~~WG~~ 92 (168)
+|+|+||.+.++ ++++|.+++ ||||+|.|.|.. .. ..............++.. ..+..|
T Consensus 2 ~~~a~SG~~~~~n~~~~~~~~~~GPiP~G~Y~i~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~w--- 63 (127)
T Q63JQ6_BURPS/2 2 TLPAFSGRGSGRDNPEATAIEKIGPIPKGIYYIVD----RQSGGNLGWLYDLWGQLGYGT-----------SDHTKW--- 63 (127)
T ss_pred ceecccCCCCCCCCHHHcccCCCCCCCCceEEEEe----CCCCCCchhhHHHhhhcccCC-----------CCCcce---
Confidence 789999999976 789999999 999999999977 43 100000000000000000 012366
Q ss_pred eEEeEecCC-CCCcc-CCCCcCCEEEeC-CCCCCCcceeecchh-HHHHHHHhhc
Q FD01846342_044 93 RIRLESADE-KTRKA-CGGKRGGFYIHD-STKGYSHGCIEVEPV-FFRILKQETE 143 (168)
Q Consensus 93 Rv~L~P~~~-t~t~~-~~~gR~gFyiHG-g~~~gS~GCIdl~~~-Ff~~l~~~~~ 143 (168)
+.|.+.+. ..+ . ....|++|+||+ +...+|+|||++.+. +++.|++++.
T Consensus 64 -f~l~~~~i~~~~-~~~~~~R~~f~iH~~~~~~~S~GCI~~~~~~~~~~l~~~l~ 116 (127)
T Q63JQ6_BURPS/2 64 -FMLWNRDTGDST-YVGKVKRGAFRLHPIGPMGLSEGCITVTNTARFERFAAFLR 116 (127)
T ss_pred -eeeeeccCCCCc-ccCCccccceeecCCCCCCCCceeeeeCCHHHHHHHHHHHH
Confidence 44433211 000 1 112799999998 777899999999986 8888888877
No 3
>8IKR_A YkuD domain-containing protein; peptidoglycan, hydrolase, amidase, YukD; 2.9A {Escherichia coli 908519}
Probab=97.25 E-value=0.0037 Score=53.23 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred EeCCC----eEEEecCceEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCCCC
Q FD01846342_044 3 TFDGQ----KLTWPGIGIFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQ 77 (168)
Q Consensus 3 ~FdG~----~L~~~~~G~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 77 (168)
.|.+. .|.. +|++.+|..+.- ....+. .++|+|.|.|.. ..... .+
T Consensus 39 v~~~~~~~~~lv~----~~pvs~G~~~~g---~k~~~~d~~TP~G~y~I~~----k~~~p-~s----------------- 89 (236)
T 8IKR_A 39 LYVKMGEQYQLLD----SYKICKYSGGLG---PKQRQGDFKSPEGFYSVQR----NQLKP-DS----------------- 89 (236)
T ss_dssp EEEEETTEEEEEE----EEEEEECCSCSS---CCCSSSCCCCCCEEEEESS----CCSCC-TT-----------------
T ss_pred EEEecCCeeEEEE----EEEEEeccCCCC---CccccCCCcCCcEEEEEEc----cccCC-Cc-----------------
Q ss_pred CCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCCCCcceeecchh----HHHHHHHhhcccCCCceEEE
Q FD01846342_044 78 AAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKGYSHGCIEVEPV----FFRILKQETEKENGEKTFTV 153 (168)
Q Consensus 78 ~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~gS~GCIdl~~~----Ff~~l~~~~~~~~~~~~i~v 153 (168)
....|-....+-..+..... ..++++|||+.. |+|||-|... ++.++......+ +..+.|
T Consensus 90 -------~~~~~~~~~yp~~~d~~~~~-----~g~~i~IHG~~~--S~GCI~l~~~di~~ly~~v~~~~~~g--~~gt~V 153 (236)
T 8IKR_A 90 -------RYYKAINIGFPNAYDRAHGY-----EGKYLMIHGDCV--SIGCYAMTNQGIDEIFQFVTGALVFG--QPSVQV 153 (236)
T ss_dssp -------TSSSCEECCSSCHHHHHTTC-----CCCCCEEESSCC--CSSCEEECHHHHHHHHHHHHHHHHSS--CSCEEE
T ss_pred -------cceeceecCCCChHHHhcCC-----CCCcEEEecCCC--cCCcccCCHHhHHHHHHHHHHHHHcC--CCCceE
Q ss_pred EE
Q FD01846342_044 154 NV 155 (168)
Q Consensus 154 ~V 155 (168)
.|
T Consensus 154 ~I 155 (236)
T 8IKR_A 154 SI 155 (236)
T ss_dssp EE
T ss_pred EE
No 4
>PF13645.10 ; YkuD_2 ; L,D-transpeptidase catalytic domain
Probab=96.92 E-value=0.034 Score=43.59 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred cEeC----CCeEEEec--Cc----eEEeecCCCcc--CCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccc
Q FD01846342_044 2 LTFD----GQKLTWPG--IG----IFKATTGLPDL--QWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSW 68 (168)
Q Consensus 2 l~Fd----G~~L~~~~--~G----~~~A~SG~p~~--q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~ 68 (168)
+..+ .+.|.+++ ++ +|+...|.... .....+..+. .|.|.|.|.|..
T Consensus 35 Vd~~~~~~~~~l~~~~~~~~~~v~~~~v~~G~~~~~~~~~~~~~~~g~~~Tp~G~~~i~~-------------------- 94 (171)
T Q8KBC6_CHLTE/1 35 IDFDKPSDCKRLFIIDINSGTVIQTALVAHGRGSGDIMATSFSNQPGSNKSSLGFYLTEN-------------------- 94 (171)
T ss_pred EECCCCCCCceEEEEECCCCeEEEEEEcccccCCCCcccccccCCCCCCCCCCeEEEEeC--------------------
Q ss_pred cceecCCCCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCC------------CCcceeecchhHHH
Q FD01846342_044 69 GWSTIPRGQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKG------------YSHGCIEVEPVFFR 136 (168)
Q Consensus 69 gi~~~~~~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~------------gS~GCIdl~~~Ff~ 136 (168)
... ....|...---+.+....+. .+.++.||+.... -|+|||-+...-..
T Consensus 95 -~~~------------~~~~~~~~~~g~~~~~~~~~-----~~~~i~iH~~~~~~~~~~~~~~~~~~s~GCi~~~~~~~~ 156 (171)
T Q8KBC6_CHLTE/1 95 -TYI------------GNNGYSLVLKGLDQGINDKA-----EQRGIVIHGADYVSEEYIRQKGRLGRSLGCPALSMDQCR 156 (171)
T ss_pred -cEe------------cCCceEEEeEecCCCCcccc-----ccceEEEccCccCCHHHHHhhCCCCCCCCccccCHHHHH
Q ss_pred HHHHhhcccCCCceEEEEE
Q FD01846342_044 137 ILKQETEKENGEKTFTVNV 155 (168)
Q Consensus 137 ~l~~~~~~~~~~~~i~v~V 155 (168)
+|......+ ..|.|
T Consensus 157 ~l~~~~~~g-----t~V~i 170 (171)
T Q8KBC6_CHLTE/1 157 EVIDLIKDG-----TCLFI 170 (171)
T ss_pred HHHHHccCC-----cEEEE
No 5
>6RLG_B L,D-transpeptidase 2; beta lactmase, antibiotic resistance, tuberculosis, ANTIMICROBIAL PROTEIN; HET: EDO, TRS; 1.51000183032A {Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)}
Probab=96.16 E-value=0.14 Score=43.91 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cEeCCCeEEEecCc-----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC-CccccccccCCccccceecCC
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA-PIRNAADCDLGPSWGWSTIPR 75 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~ 75 (168)
+....+.+.++. + .|+...|+++ -|.|.|.|.|.- .. ... ..+...|...-..
T Consensus 204 v~~~~~~~~v~~-~~~~~~~~~~s~G~~~-----------~~Tp~G~~~v~~----k~~~~~-----~~~~~~~~~~~~~ 262 (355)
T 6RLG_B 204 ADDNTKILTVRV-NGEVVKSMPTSMGKDS-----------TPTANGIYIVGS----RYKHII-----MDSSTYGVPVNSP 262 (355)
T ss_dssp EETTTTEEEEEE-TTEEEEEEECBCBCTT-----------SCCCBEEEECCC----EEEEEE-----EEGGGGTCCTTST
T ss_pred EeCCCCEEEEEE-CCEEEEEEECccCCCC-----------CCCCcEEEEece----ecceEE-----EeccccCCCCCCC
Q ss_pred CCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCC--------CCcceeecchhHHHHHHHhhcccCC
Q FD01846342_044 76 GQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKG--------YSHGCIEVEPVFFRILKQETEKENG 147 (168)
Q Consensus 76 ~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~--------gS~GCIdl~~~Ff~~l~~~~~~~~~ 147 (168)
. .+..+..+-++|. . +|++|||-... .|||||-|...-.++|-+....+
T Consensus 263 ~--------~~~~~~~~~~~~~------~-------~~~~iHg~~~~~~~~g~~~~S~GCi~l~~~~~~~l~~~~~~g-- 319 (355)
T 6RLG_B 263 N--------GYRTDVDWATQIS------Y-------SGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRG-- 319 (355)
T ss_dssp T--------CCEEEEEEEEECC------T-------TSCEEEECGGGTTTTTTCCCBSSSEEECHHHHHHHHHHCCTT--
T ss_pred C--------CccccccceeEec------C-------CceEeeccccccCCCCCCCCCcccccCCHHHHHHHHHhCCCC--
Q ss_pred CceEEEEEEcCCCCC
Q FD01846342_044 148 EKTFTVNVKYVSGQQ 162 (168)
Q Consensus 148 ~~~i~v~V~Y~~~~~ 162 (168)
-+|.|.-.....
T Consensus 320 ---~~v~i~~~~~~~ 331 (355)
T 6RLG_B 320 ---DIVEVVNTVGGT 331 (355)
T ss_dssp ---CEEEEESCSSCB
T ss_pred ---CEEEEECCCCCc
No 6
>7KGM_A Putative exported protein; L, D-transpeptidase, antibiotic, TRANSFERASE; 2.6A {Citrobacter rodentium (strain ICC168)}
Probab=96.13 E-value=0.09 Score=50.85 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred cEeCCCeEEEecCc----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCCCccccccccCCccccceecCCCC
Q FD01846342_044 2 LTFDGQKLTWPGIG----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQ 77 (168)
Q Consensus 2 l~FdG~~L~~~~~G----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 77 (168)
+......|.++.+| +++..+|+++ -|.|.|.|.|.. +.--+..
T Consensus 341 Vni~~~~L~~~~~g~~v~~~~V~vG~~~-----------~~TP~g~~~i~~---------------------~~~nP~W- 387 (575)
T 7KGM_A 341 VNIPAYSLVYYQNGSQVLASRVIVGRPD-----------RKTPMMSSALNN---------------------VVVNPPW- 387 (575)
T ss_dssp EEGGGTEEEEEETTEEEEEEEEECBCGG-----------GCCCCEEEECCE---------------------EEESCCE-
T ss_pred EEcCCcEEEEEECCEEEEEEEEEcCCCC-----------CCCccccceeeE---------------------EEeCCCC-
Q ss_pred CCCCccccc-------------------------ccCc--------------------cceEEeEecCCCCCccCCCC--
Q FD01846342_044 78 AAGTCEICW-------------------------ANWG--------------------YNRIRLESADEKTRKACGGK-- 110 (168)
Q Consensus 78 ~~g~~~~~~-------------------------~~WG--------------------~~Rv~L~P~~~t~t~~~~~g-- 110 (168)
+.+.. ..|| .+|++-.|-..... |
T Consensus 388 ----~vP~si~~~~i~p~~~~dp~yl~~~~~~v~~~~~~~~~v~~~~i~w~~~~~~~~~~~~~q~pG~~N~L-----G~~ 458 (575)
T 7KGM_A 388 ----NVPPTLARKDILPKLWNDPGYLERHGYTVMRGWNSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHNSL-----GRY 458 (575)
T ss_dssp ----ECCHHHCCCCCGGGTTTCTTHHHHTTEEEEC---CCSEECTTTSCGGGCCTTTCCCEEEECSSTTSTT-----TTE
T ss_pred ----CCChhHHHhchHHHHHcChhHHHHcCcEEeeCCCCCCccCHHHCCHHHcCCccCCeeEeeCCCCCCCC-----eeE
Q ss_pred ------cCCEEEeCCC---------CCCCcceeecchh--HHHHHHHh----------------------hcccCCCceE
Q FD01846342_044 111 ------RGGFYIHDST---------KGYSHGCIEVEPV--FFRILKQE----------------------TEKENGEKTF 151 (168)
Q Consensus 111 ------R~gFyiHGg~---------~~gS~GCIdl~~~--Ff~~l~~~----------------------~~~~~~~~~i 151 (168)
+.++||||.. ...|||||-|... +..+|.+. .. .|
T Consensus 459 kf~~~n~~~iylHdtp~~~~f~~~~r~~ShGCVRv~~~~~lA~~ll~~~~~~~~~i~~~l~~g~~~~v~l~~------~i 532 (575)
T 7KGM_A 459 KFNMPSSDAIYLHDTPNHTLFSKDARALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGNTRYVTIRQ------TI 532 (575)
T ss_dssp EEECCS-SCCCEECCSCGGGGGCSCCCCBSSSEEETTHHHHHHHHHHHTTCCHHHHHHHHHHCCCEEEECSS------CC
T ss_pred EEeCCCCCceEEecCCChhHcCCccccccCCceecCCHHHHHHHHcccCCCChHHHHHHHHcCCcEEEeCCC------Cc
Q ss_pred EEEEEc
Q FD01846342_044 152 TVNVKY 157 (168)
Q Consensus 152 ~v~V~Y 157 (168)
+|.|.|
T Consensus 533 pV~i~Y 538 (575)
T 7KGM_A 533 PVNLYY 538 (575)
T ss_dssp EEEEEC
T ss_pred cEEEEE
No 7
>5BMQ_A ErfK/YbiS/YcfS/YnhG family protein; L, D-transpeptidases, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE; HET: SO4, MSE; 2.05A {Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)}
Probab=96.07 E-value=0.15 Score=41.31 Aligned_cols=93 Identities=23% Similarity=0.232 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cEeCCCeEEEecCc----e-EEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC---CccccccccCCccccceec
Q FD01846342_044 2 LTFDGQKLTWPGIG----I-FKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA---PIRNAADCDLGPSWGWSTI 73 (168)
Q Consensus 2 l~FdG~~L~~~~~G----~-~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~---~~~~~~~~~~~~~~gi~~~ 73 (168)
+.-..+.|.++++| . +....|... .|.|.|.|.|.. .. +.+
T Consensus 130 v~~~~~~~~~~~~~~~~~~~~~v~~G~~~-----------~~tp~G~~~i~~----~~~~~~~~---------------- 178 (243)
T 5BMQ_A 130 VDLTHQTLWVVEDGKRIFEPTVVRTGMAG-----------YATQPGAWKIFV----KEGTHWSK---------------- 178 (243)
T ss_dssp EETTTTEEEEEETTEEEEEEEEEECCCTT-----------SCCCCEEEECCE----EEEEEEET----------------
T ss_pred EECCCCEEEEEECCEEEEeeeEeeCCCCC-----------CCCCCEEEEEEE----EecCCcCc----------------
Q ss_pred CCCCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeC------CCCCCCcceeecchhHHHHHHHhhcccCC
Q FD01846342_044 74 PRGQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHD------STKGYSHGCIEVEPVFFRILKQETEKENG 147 (168)
Q Consensus 74 ~~~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHG------g~~~gS~GCIdl~~~Ff~~l~~~~~~~~~ 147 (168)
....|..+.+.+ . ++.+||+ .....|||||-|...-.++|..+...+
T Consensus 179 -----------~~~~~~~~~~~~-------~-------~~~~iH~~~~~~~~~~~~s~GCi~~~~~~~~~l~~~~~~g-- 231 (243)
T 5BMQ_A 179 -----------KYKVWLPYWQNF-------N-------NGEGLHTTTTYIHEPWIGSHGCVNLLPSDSKKLYEMLDFG-- 231 (243)
T ss_dssp -----------TTTEEEEEEEEE-------E-------TTEEEEECSSCTTCGGGCCSSSEEECHHHHHHHHHHCCTT--
T ss_pred -----------cccccceeeEec-------c-------CCceeecCCCcCCCCCcCCCCccccCHHHHHHHHHhCCCC--
Q ss_pred CceEEEEE
Q FD01846342_044 148 EKTFTVNV 155 (168)
Q Consensus 148 ~~~i~v~V 155 (168)
..|.|
T Consensus 232 ---~~V~v 236 (243)
T 5BMQ_A 232 ---DTVQV 236 (243)
T ss_dssp ---CEEEE
T ss_pred ---CEEEE
No 8
>7KEM_A L,D-transpeptidase 2; Transpeptidase, Peptidoglycan synthesis, TRANSFERASE; HET: 0JC, DGL, 6CL; 1.77A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)} SCOP: b.160.1.1, b.1.18.0
Probab=95.97 E-value=0.27 Score=43.00 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred cEeCCCeEEEecCc----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC-CccccccccCCccccceecCCC
Q FD01846342_044 2 LTFDGQKLTWPGIG----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA-PIRNAADCDLGPSWGWSTIPRG 76 (168)
Q Consensus 2 l~FdG~~L~~~~~G----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~~ 76 (168)
+....+.+.++.++ .|+...|+++ -|.|+|.|.|.. .. ... ..++..|+..-...
T Consensus 257 v~~~~~~~~v~~~~~~v~~~~~s~G~~~-----------~~Tp~G~~~i~~----k~~~~~-----~~~~~~~~~~~~~~ 316 (408)
T 7KEM_A 257 ADDNTKILTVRVNGEVVKSMPTSMGKDS-----------TPTANGIYIVGS----RYKHII-----MDSSTYGVPVNSPN 316 (408)
T ss_dssp EETTTTEEEEEETTEEEEEEECBCBCTT-----------SCCCBEEEECCC----EEEEEE-----EEGGGGTCCTTSTT
T ss_pred EeCCCCEEEEEECCEEEEEEECcCCCCC-----------CCCCCcEEEece----ecccee-----ccccccCCCCCCCC
Q ss_pred CCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCC--------CCCcceeecchhHHHHHHHhhcccCCC
Q FD01846342_044 77 QAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTK--------GYSHGCIEVEPVFFRILKQETEKENGE 148 (168)
Q Consensus 77 ~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~--------~gS~GCIdl~~~Ff~~l~~~~~~~~~~ 148 (168)
.+..+..+-++|. . +|++|||-.. ..|||||-|...=.++|-+....+
T Consensus 317 --------~~~~~~~~~~~~~------~-------~g~~iH~~~~~~~~~g~~~~S~GCi~l~~~da~~l~~~~~~g--- 372 (408)
T 7KEM_A 317 --------GYRTDVDWATQIS------Y-------SGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRG--- 372 (408)
T ss_dssp --------CCEEEEEEEEECC------T-------TSCEEEECGGGTTTTTTCCCBSSCEEECHHHHHHHHHHCCTT---
T ss_pred --------CccccccceEEec------C-------CCeEeecCCccCCCCCCCCCCcccccCCHHHHHHHHHhCCCC---
Q ss_pred ceEEEEEEcCCCCC---ccC
Q FD01846342_044 149 KTFTVNVKYVSGQQ---TNG 165 (168)
Q Consensus 149 ~~i~v~V~Y~~~~~---t~g 165 (168)
..|.|....... .+|
T Consensus 373 --t~V~i~~~~~~~~~~~~~ 390 (408)
T 7KEM_A 373 --DIVEVVNTVGGTLPGIDG 390 (408)
T ss_dssp --CEEEEESCSSCBCCTTSS
T ss_pred --CEEEEECCCCCccCCCCC
No 9
>7AJO_A L,D-transpeptidase YcbB; L, D-transpeptidase, TRANSFERASE; HET: S2K, MSE; 1.85A {Vibrio cholerae}
Probab=95.85 E-value=0.055 Score=50.98 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cEeCCCeEEEecCc----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC----CccccccccCCccccc---
Q FD01846342_044 2 LTFDGQKLTWPGIG----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA----PIRNAADCDLGPSWGW--- 70 (168)
Q Consensus 2 l~FdG~~L~~~~~G----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~----~~~~~~~~~~~~~~gi--- 70 (168)
+......|.++++| +++++.|++. -|.|.|.+.|.. -. +.-..+ |
T Consensus 279 Vni~~~~l~~~~~g~~~~~~~v~vG~~~-----------~~TP~~~~~i~~----~~~nP~W~vp~~---------i~~~ 334 (523)
T 7AJO_A 279 VNVPGFDMKYWDAGREVFESKVVVGKTT-----------RPTPVMNTKLDS----LIINPTWNVPHK---------IMVE 334 (523)
T ss_dssp EEGGGTEEEEEETTEEEEEEEEEEECTT-----------SCCCCEEEEEEE----EEESCCEECCHH---------HCCC
T ss_pred EEeCCeEEEEEECCEEEEEEEEEcCCCC-----------CCCccccccccE----EEECCCCCCChh---------HHHh
Q ss_pred --------------------------eecCCCCCCCCcccccccCccc-------eEEeEecCCCCCccCCCC-------
Q FD01846342_044 71 --------------------------STIPRGQAAGTCEICWANWGYN-------RIRLESADEKTRKACGGK------- 110 (168)
Q Consensus 71 --------------------------~~~~~~~~~g~~~~~~~~WG~~-------Rv~L~P~~~t~t~~~~~g------- 110 (168)
.+.... ...+|... |++..|.....- |
T Consensus 335 ~~lp~~~~~~~~l~~~~~~~~~~~~~g~~v~~--------~~i~w~~~~~~~~~~~~~q~pg~~N~L-----G~~kf~~~ 401 (523)
T 7AJO_A 335 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDP--------ALIDWEAVEPETFPYRLRQQAGVQNAL-----GTYKFNTP 401 (523)
T ss_dssp CCHHHHHHCTTHHHHTTEEEEEETTEEEEECG--------GGSCGGGCCGGGCCSEEEECSSTTSTT-----TTEEEECC
T ss_pred chHHHHhhCHHHHHHCCCeEecCCCCCcccCH--------HHCCHHHhCCccCCeEEEeCCCCCCCC-----ceeEEeCC
Q ss_pred -cCCEEEeCCCCCC---------Ccceeecchh--HHHHHHHh-----------------hcccCCCceEEEEEEc
Q FD01846342_044 111 -RGGFYIHDSTKGY---------SHGCIEVEPV--FFRILKQE-----------------TEKENGEKTFTVNVKY 157 (168)
Q Consensus 111 -R~gFyiHGg~~~g---------S~GCIdl~~~--Ff~~l~~~-----------------~~~~~~~~~i~v~V~Y 157 (168)
..+.||||..... |||||-|+.. +..+|.+. .. .|+|.|.|
T Consensus 402 n~~~iylHdT~~~~~f~~~~r~~S~GCiRl~~~~~la~~ll~~~~~~~~~~~~~~~~~~l~~------~~pv~i~y 471 (523)
T 7AJO_A 402 NSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKK------RIPVHIIY 471 (523)
T ss_dssp CTTCCCEECCSCGGGGGSSCCEEESSCEEETTHHHHHHHHHHHTTCCCSSCCSSCEEEEEEE------EEEEEEEC
T ss_pred CCCCeeecCCCChHHcCCcccccCCCCceecCHHHHHHHHHhCCCCCHHHcCcceEEEeCCC------CCcEEEEE
No 10
>8DA2_A L,D-transpeptidase family protein; cell wall, transpeptidase, peptidoglycan, TRANSFERASE; 2.6A {Acinetobacter baumannii}
Probab=95.73 E-value=0.17 Score=46.56 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred cEeCCCeEEEecC-c----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCCCccccccccCCccccceecCCC
Q FD01846342_044 2 LTFDGQKLTWPGI-G----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRG 76 (168)
Q Consensus 2 l~FdG~~L~~~~~-G----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 76 (168)
+...-+.|.+++. | .|+++.|..+ -|.|.|.|.|.- ....+..
T Consensus 264 Vd~~~~~l~~~~~~g~lv~~~pvs~G~~~-----------~pTP~G~~~V~~---------------------~~~~p~~ 311 (393)
T 8DA2_A 264 AHKGAKQLYLFNSRNQMIASFPATIGSTD-----------TPSPTGTYKVVG---------------------VARNPWY 311 (393)
T ss_dssp EETTTTEEEEECTTSCEEEEEECEESCTT-----------SCCCCSCEECCC---------------------CCCSCCC
T ss_pred EEcCCCEEEEEecCCcEEEEcCCccccCC-----------CCCCCeeeEEEe---------------------eeeCCCC
Q ss_pred CCCCCcccccccCccceEEeEecCCCCCccCCCC-------cCCEEEeCCCCCC------CcceeecchhHHHHHHHhhc
Q FD01846342_044 77 QAAGTCEICWANWGYNRIRLESADEKTRKACGGK-------RGGFYIHDSTKGY------SHGCIEVEPVFFRILKQETE 143 (168)
Q Consensus 77 ~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~g-------R~gFyiHGg~~~g------S~GCIdl~~~Ff~~l~~~~~ 143 (168)
... ...........+..+.|-..... | +.+++|||...+. |||||-|...-..+|.....
T Consensus 312 ~~~--~~~~~~~~~~~~~~~~pGp~np~-----G~~wi~l~~~g~~IHGtp~p~~ig~~~ShGCIRL~n~Da~~L~~~v~ 384 (393)
T 8DA2_A 312 SYS--PSNFVQGKNLKPLSLPPGPNAPV-----GNIWIGLSKKSFGIHGTPNPSLISKTASHGCIRLTNWDANDLGNKVR 384 (393)
T ss_dssp CCC--C-----------CCCCCSTTSSS-----TTCCCCCCCCCCCEECCCCTTCCC----CSCEECCHHHHHHHHHHCC
T ss_pred CCC--HHHhccccCCCCccCCCCCCCCc-----cceEeecCCCcEEEecCCCcccccCCCCCCeeecCHHHHHHHHHhCC
Q ss_pred ccCCCceEEEEEE
Q FD01846342_044 144 KENGEKTFTVNVK 156 (168)
Q Consensus 144 ~~~~~~~i~v~V~ 156 (168)
.+ ..|.|.
T Consensus 385 ~G-----t~V~i~ 392 (393)
T 8DA2_A 385 SG-----VTVKFL 392 (393)
T ss_dssp TT-----CEEEEE
T ss_pred CC-----CEEEEe
No 11
>1ZAT_A L,D-transpeptidase; L, D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, TRANSFERASE; 2.4A {Enterococcus faecium} SCOP: b.160.1.1, d.335.1.1
Probab=95.64 E-value=0.21 Score=40.90 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cEeCCCeEEEecCc-----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCCCccccccccCCccccceecCCC
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRG 76 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 76 (168)
+....+.|.++. + +|++.+|.++ .|+|.|.|.|.. ..
T Consensus 131 v~~~~~~l~l~~-~~~~~~~~~~~~G~~~-----------~~tp~G~~~v~~----------~~---------------- 172 (250)
T 1ZAT_A 131 VDLENQHMWYYK-DGKVALETDIVSGKPT-----------TPTPAGVFYVWN----------KE---------------- 172 (250)
T ss_dssp EETTTTEEEEEE-TTEEEEEEECBCBCTT-----------SCCCCEEEECCC----------CE----------------
T ss_pred EECCCCEEEEEE-CCEEEEEEEeecCCCC-----------CCCCCEEEEEEE----------ee----------------
Q ss_pred CCCCCcccccccCccce-----EEeEecCCCCCccCCCCcCCEEEeCCC-----------CCCCcceeecchhHHHHHHH
Q FD01846342_044 77 QAAGTCEICWANWGYNR-----IRLESADEKTRKACGGKRGGFYIHDST-----------KGYSHGCIEVEPVFFRILKQ 140 (168)
Q Consensus 77 ~~~g~~~~~~~~WG~~R-----v~L~P~~~t~t~~~~~gR~gFyiHGg~-----------~~gS~GCIdl~~~Ff~~l~~ 140 (168)
....|...+ ..........- ...+++|||.. ...|+|||-|...-..+|..
T Consensus 173 --------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ihg~~~~~~~~~~~~~~~~s~Gci~l~~~~~~~l~~ 239 (250)
T 1ZAT_A 173 --------EDATLKGTNDDGTPYESPVNYWMPI-----DWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFG 239 (250)
T ss_dssp --------EEEECCBCC--CCCBCCEEEEEEEC-----SSSSCEEEECTTCSCCSTTHHHHHCBSSSEEECHHHHHHHHH
T ss_pred --------cCceeecCCCCCCCCcCcccceeec-----CCCceEEecCCCchhhCCcccccCCCCCcccCCHHHHHHHHh
Q ss_pred hhcccCCCceEEEEE
Q FD01846342_044 141 ETEKENGEKTFTVNV 155 (168)
Q Consensus 141 ~~~~~~~~~~i~v~V 155 (168)
....+ ..|.|
T Consensus 240 ~~~~g-----t~v~i 249 (250)
T 1ZAT_A 240 MVEKG-----TPVLV 249 (250)
T ss_dssp HCCTT-----CEEEE
T ss_pred hCCCC-----CeEEE
No 12
>4XZZ_A Conserved hypothetical secreted protein; Csd6, cell shape, L, D-carboxypeptidase, Helicobacter pylori, HP0518, flagellin, peptidoglycan, HYDROLASE; HET: GOL; 2.03A {Helicobacter pylori 26695}
Probab=95.50 E-value=0.31 Score=42.44 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred EeC--CCeEEEecCceEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCCCCCC
Q FD01846342_044 3 TFD--GQKLTWPGIGIFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAA 79 (168)
Q Consensus 3 ~Fd--G~~L~~~~~G~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (168)
.|. +..+.... +|++..|.++ .....+. .+.|+|.|.|.. . ...
T Consensus 91 ~~~~~~g~~~~~~--~~~~~~G~~~----~~~~~~gd~~TP~G~~~i~~--------------k------~~~------- 137 (339)
T 4XZZ_A 91 FYEIENNMLKKIN--SSKALVGSKK----GDKTLEGDLATPIGVYRITQ--------------K------LER------- 137 (339)
T ss_dssp EEEEETTEEEEEE--EEECBCBSBC----SCCCSTTSCBCCCEEEEEEE--------------E------ECS-------
T ss_pred EEEEECCEEEEEE--EEEEEecccC----CCCcccCCCCCCcEEEEEEe--------------e------ccc-------
Q ss_pred CCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCCC------CcceeecchhHHHHHHHhhcccCCCceEEE
Q FD01846342_044 80 GTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKGY------SHGCIEVEPVFFRILKQETEKENGEKTFTV 153 (168)
Q Consensus 80 g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~g------S~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v 153 (168)
...-||.....+.-....+..... ..++++|||..... |+|||-+...-+..|......+ ...+
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iHg~~~~~~~g~~~S~GCi~~~~~~~~~l~~~~~~g----~~v~ 207 (339)
T 4XZZ_A 138 -----LDQYYGVLAFVTNYPNLYDTLKKR-TGHGIWVHGMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGE----KAFL 207 (339)
T ss_dssp -----CCGGGTTCEEEECCSCHHHHHTTC-CCCCCEEECCCTTCCCCCSCBSSCEECCHHHHHHHHHHHTTC----CEEE
T ss_pred -----chhhceeeeEEcCCCchhhhhhcc-CCCeEEEeccCCCCCCCcCCCCCceeeChHHHHHHHHHcCCC----CcEE
Q ss_pred EE
Q FD01846342_044 154 NV 155 (168)
Q Consensus 154 ~V 155 (168)
.+
T Consensus 208 i~ 209 (339)
T 4XZZ_A 208 IT 209 (339)
T ss_dssp EE
T ss_pred EE
No 13
>4LPQ_A ErfK/YbiS/YcfS/YnhG family protein; MCSG, LD-transpeptidase, Structural Genomics, Midwest Center for Structural Genomics, L, D-transpeptidase, PSI-Biology, TRANSFERASE; HET: MSE; 1.37A {Xylanimonas cellulosilytica}
Probab=95.31 E-value=0.21 Score=37.84 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred cEeCCCeEEEecCc-----eEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCC
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPR 75 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 75 (168)
+....+.|.++. + .|.+++|.+..... ...+. .+.|.|.|.|..
T Consensus 90 v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~--~~~~~~~~tp~G~~~i~~--------------------------- 139 (207)
T 4LPQ_A 90 IDLDKQILLAVE-DGRVVRIINASSGNGETYEA--KGRTYRATTPRGDFAVYM--------------------------- 139 (207)
T ss_dssp EETTTTEEEEEE-TTEEEEEEECBCBCCCEEEE--TTEEEECCCCCEEEECCE---------------------------
T ss_pred ecccccEEEEEE-CCeEEEEEEccCCCCcceee--CCeEEEEecCCEEEEEEE---------------------------
Q ss_pred CCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCC----CCCcceeecchhHHHHHHHh--hcccCCCc
Q FD01846342_044 76 GQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTK----GYSHGCIEVEPVFFRILKQE--TEKENGEK 149 (168)
Q Consensus 76 ~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~----~gS~GCIdl~~~Ff~~l~~~--~~~~~~~~ 149 (168)
....|-......-....... -.++++|||-.. ..|||||-|...-..+|... ...+
T Consensus 140 ---------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~s~Gci~l~~~~~~~~~~~~~~~~g---- 201 (207)
T 4LPQ_A 140 ---------QRDGMHSSTLELGDMWRPKY-----FRGGYAVHGSSSIPTYPASHGCVRVSNAAMNWLWDSWGMPIG---- 201 (207)
T ss_dssp ---------ECSSEECCSSCSSCEEEEEE-----EETTEEEEECSCCCSSCCBSSSEEECHHHHHCCCCCCCCCTT----
T ss_pred ---------eecceeccccccCCCcccee-----eeCcEEeccCCCCCCCCCcCCeeecCHHHHHHHHhhcCCCCC----
Q ss_pred eEEEEE
Q FD01846342_044 150 TFTVNV 155 (168)
Q Consensus 150 ~i~v~V 155 (168)
..|.|
T Consensus 202 -~~v~i 206 (207)
T 4LPQ_A 202 -TRVLL 206 (207)
T ss_dssp -CEEEE
T ss_pred -CeEEe
No 14
>6XJ6_A Pgp2; peptidase, LD-carboxypeptidase, peptidoglycan hydrolase, NTF2 fold, HYDROLASE; 1.497A {Campylobacter jejuni subsp. jejuni}
Probab=95.24 E-value=0.2 Score=41.92 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCCCCCCCCcccccccCccceE
Q FD01846342_044 16 IFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCEICWANWGYNRI 94 (168)
Q Consensus 16 ~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~g~~~~~~~~WG~~Rv 94 (168)
+|++..|..+ ....+. .|.|.|.|.|.. . +.. ....+|..-+
T Consensus 55 ~~~~~~G~~~-----~~~~~~~~~TP~G~~~v~~--------------~------~~~------------~~~~~~~~~~ 97 (287)
T 6XJ6_A 55 QKEIITGLMG-----DKKIEGDLKTPVGFYELGR--------------K------FNP------------GDPYYGPFAF 97 (287)
T ss_dssp EESCBCCBSS-----CCCSTTSCBCCCEEEEBCC--------------C------BCC------------SCGGGCSCBE
T ss_pred EEEEeeccCC-----CceecCCCCCCcEEEeeee--------------e------eCC------------CCccccceee
Q ss_pred EeEecCCCCCccCCCCcCCEEEeCC-------CCCCCcceeecchh-HHHHHHHhhcccCCCceEEEEEE
Q FD01846342_044 95 RLESADEKTRKACGGKRGGFYIHDS-------TKGYSHGCIEVEPV-FFRILKQETEKENGEKTFTVNVK 156 (168)
Q Consensus 95 ~L~P~~~t~t~~~~~gR~gFyiHGg-------~~~gS~GCIdl~~~-Ff~~l~~~~~~~~~~~~i~v~V~ 156 (168)
.+.....-...... ..++++|||. ....|+|||.+... +-........ ...+.|.
T Consensus 98 ~~~~~~~~~~~~~~-~~~~~~iH~~~~~~~~~~~~~S~Gci~l~~~~~~~l~~~~~~------~~~~~i~ 160 (287)
T 6XJ6_A 98 ATTYPNLLDKVQGK-TGGGIWIHGYPLDGSRLDEFKTRGCIALFNNNLEKFAQVVQD------KKVFVMT 160 (287)
T ss_dssp EBCCSCHHHHHTTC-CCCCCEEECCCTTCCCCCTTTSTTCEECCHHHHHHHHHHHTT------SCEEEEE
T ss_pred eCCCCccchHhcCC-CCCeEEEccccCCCCCCCccCCCCeEEecchHHHHHHHHhcc------CCceEEe
No 15
>7O21_A Uncharacterized conserved; Peptidoglycan LD-Carboxypeptidase NTF2, HYDROLASE; HET: EDO, BR; 1.34A {Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)}
Probab=94.97 E-value=0.28 Score=42.23 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred EeCCC----eEEEecCceEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCCCC
Q FD01846342_044 3 TFDGQ----KLTWPGIGIFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQ 77 (168)
Q Consensus 3 ~FdG~----~L~~~~~G~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 77 (168)
.|.+. .+.. +|++..|..+ ....... .|.|+|.|.|.. ...-...
T Consensus 55 ~~~~~~~~~~~v~----~~~~~~G~~~----~~~~~~~~~~TP~G~~~v~~---------------------~~~~~~~- 104 (324)
T 7O21_A 55 VFERNGEQIQKIT----EYPADIGKMG----GNKTKRDDHKTPEGIYFLQE---------------------RLSQPKI- 104 (324)
T ss_dssp EEEEETTEEEEEE----EEECEECCBT----C-----CCCCCCCEEEEEEE---------------------EECTTTS-
T ss_pred EEEEcCCeeEEEE----EEEccccCCC----CCccccCCCCCCcEEEEeEE---------------------ecCCCCC-
Q ss_pred CCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCCC-----CcceeecchhHHHHHHHhhcc-cCCCceE
Q FD01846342_044 78 AAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKGY-----SHGCIEVEPVFFRILKQETEK-ENGEKTF 151 (168)
Q Consensus 78 ~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~g-----S~GCIdl~~~Ff~~l~~~~~~-~~~~~~i 151 (168)
....-|..-..+.-.......... ..++.+|||..... |+|||-+...-+.+|..+... + .
T Consensus 105 -------~~~~~g~~~~~~~~~~~~~~~~~~-~g~~i~iHg~~~~~~~~~~s~GCi~l~~~~~~~l~~~~~~~g-----t 171 (324)
T 7O21_A 105 -------PFSLYGALAFTTNYPNLFDKRENK-TGSGIWLHAIPDSVPLTRGSRGCVVVRNDVIKKLADYIKLGE-----T 171 (324)
T ss_dssp -------CHHHHTTCEEEECCSCHHHHHHTC-CCSCCEEECCCTTSCGGGSBTTCEECCHHHHHHHHTTCCTTT-----C
T ss_pred -------ChHHhCCcceecCCCCHHHHhccc-cCCcceeEEEeCCCCCcCCCCcEEEeeHHHHHHHHHhcccCC-----c
Q ss_pred EEEE
Q FD01846342_044 152 TVNV 155 (168)
Q Consensus 152 ~v~V 155 (168)
.|.|
T Consensus 172 ~V~i 175 (324)
T 7O21_A 172 PILI 175 (324)
T ss_dssp EEEE
T ss_pred eEEE
No 16
>4XVO_C L,D-transpeptidase; L, D-transpeptidase, Mycobacterium, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSFERASE; HET: PO4, MSE; 2.6A {Mycobacterium smegmatis}
Probab=94.79 E-value=0.83 Score=36.56 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cEeCCCeEEEecCc-----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC-CccccccccCCccccceecCC
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA-PIRNAADCDLGPSWGWSTIPR 75 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~ 75 (168)
+....+.|.++. + +|++..|+++ .|.|.|.|.|.. .. ... ......|+..-..
T Consensus 101 v~~~~~~l~~~~-~~~~v~~~~v~~G~~~-----------~~Tp~G~~~v~~----k~~~~~-----~~~~~~~~~~~~~ 159 (223)
T 4XVO_C 101 ADIDAHTFTVSV-DGEVLRKMPASMGKPK-----------FPTPRGTFTALA----KEPVVV-----MDSRTIGIPLSDP 159 (223)
T ss_dssp EETTTTEEEEEE-TTEEEEEEECBCBCTT-----------SCCCCEEEECCE----EEEEEE-----EEGGGGTCCTTST
T ss_pred EeCCCCEEEEEE-CCEEEEEEEccccCCC-----------CCCCCeeEEeee----ecCeeE-----EecccCCCCCCCc
Q ss_pred CCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCC--------CCcceeecchhHHHHHHHhhcccCC
Q FD01846342_044 76 GQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKG--------YSHGCIEVEPVFFRILKQETEKENG 147 (168)
Q Consensus 76 ~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~--------gS~GCIdl~~~Ff~~l~~~~~~~~~ 147 (168)
. ....+..+.+.|.. .+++||+.... .|||||.|...=.++|......+
T Consensus 160 ~--------~~~~~~~~~~~~~~-------------~g~~ih~~~~~~~~~g~~~~S~Gci~l~~~~~~~l~~~~~~g-- 216 (223)
T 4XVO_C 160 E--------GYKLTVNHAVRVTW-------------GGVYVHSAPWSVGSQGYANVSHGCINLSPDNAAWYYDMVSVG-- 216 (223)
T ss_dssp T--------CCEEEEEEEEECCT-------------TSCEEEECGGGTTTTTTCCCBSSSEEECHHHHHHHHHHCCTT--
T ss_pred c--------ccceeccceEEccc-------------CCEEEeecCCcccccCcCCCCCCcccCCHHHHHHHHHhCCCC--
Q ss_pred CceEEEEEEc
Q FD01846342_044 148 EKTFTVNVKY 157 (168)
Q Consensus 148 ~~~i~v~V~Y 157 (168)
-.|.|..
T Consensus 217 ---t~V~i~~ 223 (223)
T 4XVO_C 217 ---DPIIVQA 223 (223)
T ss_dssp ---CEEEEEC
T ss_pred ---CeEEEeC
No 17
>8QZG_1 YkuD domain-containing protein; transpeptidase, peptidoglycan, Gluconobacter oxydans, cell wall, antibiotics resistance, lipoprotein, TRANSFERASE; 1.73A {Gluconobacter oxydans}
Probab=94.01 E-value=1.2 Score=40.67 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CCCeEEEecC-----c----eEEeecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCC--CccccccccCCcccccee
Q FD01846342_044 5 DGQKLTWPGI-----G----IFKATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEA--PIRNAADCDLGPSWGWST 72 (168)
Q Consensus 5 dG~~L~~~~~-----G----~~~A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~--~~~~~~~~~~~~~~gi~~ 72 (168)
+-+.|.++.. + +++..+|+++ .++ -++|.|.|.|.. .. +.. .+
T Consensus 125 ~~Q~l~v~~~~~~~~~~lV~~~~VSTG~~g--------~~~~~~TP~G~F~i~~----k~~~~r~-~g------------ 179 (328)
T 8QZG_1 125 KIQHLDYVLALPDAPWESLGGTPVSTGTTG--------RKYYYITPTGVFQNTA----DRLGYRA-EG------------ 179 (328)
T ss_dssp TTCEEEEEEECTTSCCEEEEBCBCBCBCSS--------STTCBCCCCEEEECCT----TBCCEEC---------------
T ss_pred CeeEEEEEECCCCCCCeEEEEEEEECCCCC--------CcccccCCCEEEEeec----cCCCccc-CC------------
Q ss_pred cCCCCCCCCcccccccCccceEEeEecCCCCCccCCCCcCC----------EEEeCC---------CCCCCcceeecchh
Q FD01846342_044 73 IPRGQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGG----------FYIHDS---------TKGYSHGCIEVEPV 133 (168)
Q Consensus 73 ~~~~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~g----------FyiHGg---------~~~gS~GCIdl~~~ 133 (168)
..+......+|..-.++....-... -+.- +.||+. ..+-|||||=|...
T Consensus 180 -------t~n~~g~~g~g~~~~~v~d~~~~~~-----~~~w~~~~~~~~~~l~iHgt~~~~~e~~LG~paShGCIRL~~~ 247 (328)
T 8QZG_1 180 -------TKNKYGIRGIGAKGSRVWDMGWQTA-----MKGWLPRHETGQIRLEIHATDPQFLEWRLGHPASEGCIRIPAT 247 (328)
T ss_dssp --------------------CCEEEEEEEEEE-----EBTTCTTCCEEEEEEEEEECBTTBCGGGTTSCCBSSSEEECHH
T ss_pred -------cccCCCccccccccccccccccccc-----cccccCCcccCceeEEEecCChHHHHhhcCCCCCCCceecCHH
Q ss_pred HHHHHHHhh
Q FD01846342_044 134 FFRILKQET 142 (168)
Q Consensus 134 Ff~~l~~~~ 142 (168)
+.++|.++.
T Consensus 248 da~~L~~~~ 256 (328)
T 8QZG_1 248 MNKFMDHYG 256 (328)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
No 18
>6V45_A Probable carnitine operon oxidoreductase caia; SSGCID, Probable carnitine operon oxidoreductase caia, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE; HET: SO4; 2.6A {Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)}
Probab=93.94 E-value=2.6 Score=34.16 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred EeCCCeEEEecCceEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC----CccccccccCCccccceecCCCCC
Q FD01846342_044 3 TFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA----PIRNAADCDLGPSWGWSTIPRGQA 78 (168)
Q Consensus 3 ~FdG~~L~~~~~G~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~----~~~~~~~~~~~~~~gi~~~~~~~~ 78 (168)
.|.+..|.. +|++.+|+. +..|+|.|.|.. .. +..........+.....-......
T Consensus 85 v~~~g~~v~----~~~v~~G~~------------~~tp~G~~~i~~----k~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (209)
T 6V45_A 85 LVETSTTAR----RYGIAVGKQ------------GLEFQGKATISA----KREWPRWIPTKEMIERDPAHYGRFKNGMDG 144 (209)
T ss_dssp EECSSSEEE----EEECCCCTT------------SSSCCSCCEEEE----EEESCCBCCCHHHHHHCHHHHGGGTTCBCS
T ss_pred EEeCCEEEE----EEEEEecCC------------CCccCEEEEEEe----cccCCCCCCCHHHhccCchhhcccccCCCC
Q ss_pred CCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCC------CCCCcceeecchhHHHHHHHhhcccCCCceEE
Q FD01846342_044 79 AGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDST------KGYSHGCIEVEPVFFRILKQETEKENGEKTFT 152 (168)
Q Consensus 79 ~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~------~~gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~ 152 (168)
. ....+|.+.+.|.... .+.+.+|||.. ...|+|||-|...=..+|......+ ..
T Consensus 145 ~-----~~~~~g~~~i~l~~~~---------~~~~i~iHg~~~~~~~g~~~S~GCirl~~~d~~~l~~~~~~g-----t~ 205 (209)
T 6V45_A 145 G-----PGNPLGSRAMYLFQGN---------KDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLG-----TE 205 (209)
T ss_dssp S-----TTCTTTTEEEEEEETT---------EEEEEEEECCCSSCCCTTCGGGCSSCCCHHHHHHHHTTCCTT-----CC
T ss_pred C-----CCCccceeEEEeeeCC---------cccEEEEecCCChhhccCcccCCccCcChHHHHHHHhhCCCC-----CE
Q ss_pred EEE
Q FD01846342_044 153 VNV 155 (168)
Q Consensus 153 v~V 155 (168)
|.|
T Consensus 206 V~I 208 (209)
T 6V45_A 206 VVV 208 (209)
T ss_dssp CCC
T ss_pred EEE
No 19
>PF03734.18 ; YkuD ; L,D-transpeptidase catalytic domain
Probab=92.79 E-value=2.1 Score=31.81 Aligned_cols=100 Identities=20% Similarity=0.057 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred cEeCCCeEEEecCc-----eEE----eecCCCccCCchhcCCCC-CCCCCEEEEEecccCCCCCccccccccCCccccce
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFK----ATTGLPDLQWPDKQCVPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWS 71 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~----A~SG~p~~q~~~~Q~~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~ 71 (168)
+....+.|.+++ + +|+ +.+| +.... .+.|.|.|.|.. ..
T Consensus 6 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~G---------~~~~~~~~tp~G~~~i~~----------~~----------- 54 (143)
T A6TSD3_ALKMQ/3 6 VDRDQQNQASFE-LNENELNLVSYTLATTG---------IAGDFSFVTTLGSYKSIQ----------KR----------- 54 (143)
T ss_pred EeCCCCEEEEEE-cCCCeEEEEEEEeeeec---------cCCCCCccCCcEEEEEee----------cc-----------
Q ss_pred ecCCCCCCCCcccccccCccceE--EeEecCCCCCccCCCCcCCEEEeC------------------------CCCCCCc
Q FD01846342_044 72 TIPRGQAAGTCEICWANWGYNRI--RLESADEKTRKACGGKRGGFYIHD------------------------STKGYSH 125 (168)
Q Consensus 72 ~~~~~~~~g~~~~~~~~WG~~Rv--~L~P~~~t~t~~~~~gR~gFyiHG------------------------g~~~gS~ 125 (168)
....|..... .......... .+.+++||+ ....-|+
T Consensus 55 -------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 116 (143)
T A6TSD3_ALKMQ/3 55 -------------ERFEYLESGTQDIAGYAPFAIR-----FTGGAYIHGVPVAYEEQDGEQVDPGLIESLHTIGTFPRSN 116 (143)
T ss_pred -------------cceEEeccCcccccceeceEee-----ecCCeEeeccccccccCCCcccChhhhhHhhhcCCCCCCC
Q ss_pred ceeecchhHHHHHHHhhcccCCCceE--EEEE
Q FD01846342_044 126 GCIEVEPVFFRILKQETEKENGEKTF--TVNV 155 (168)
Q Consensus 126 GCIdl~~~Ff~~l~~~~~~~~~~~~i--~v~V 155 (168)
|||-+...-..+|......+ . .|.|
T Consensus 117 Gci~l~~~d~~~l~~~~~~g-----t~~~v~i 143 (143)
T A6TSD3_ALKMQ/3 117 MCVRNFTSHAEFLYNWMDSV-----NGAVIVI 143 (143)
T ss_pred CeEEccHHHHHHHHHhcccc-----CCCeeeC
No 20
>PF18925.4 ; DUF5675 ; Family of unknown function (DUF5675)
Probab=91.37 E-value=0.81 Score=35.32 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CCC-CCCCCEEEEEecccCCCCCccccccccCCccccceecCCCCCCCCcccccccCccceEEeEecCCCCCccCCCCcC
Q FD01846342_044 34 VPD-AAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRG 112 (168)
Q Consensus 34 ~~~-GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~ 112 (168)
.+. ..||+|.|.+.. .....-.+.+.|...+ +|.
T Consensus 35 ~~~~s~Ip~G~Y~l~~------------------------------------~~~~~~~~~~~l~~v~---------~r~ 69 (125)
T G8CTF9_9CAUD/8 35 KPRVSRILAGRYRCTK------------------------------------WSSKKFGNVWILHDTK---------GRS 69 (125)
T ss_pred CCCcccccCcEEEEEE------------------------------------EecCCccceEEEEcCC---------CCC
Q ss_pred CEEEeCCCCCCC---------cceeecchh
Q FD01846342_044 113 GFYIHDSTKGYS---------HGCIEVEPV 133 (168)
Q Consensus 113 gFyiHGg~~~gS---------~GCIdl~~~ 133 (168)
+..||-|..+.. .|||-+...
T Consensus 70 ~i~iH~gn~~~~~~~~~~~~~~GCIl~g~~ 99 (125)
T G8CTF9_9CAUD/8 70 YILIHKGNVAGDTALGFKTHSAGCILVGLK 99 (125)
T ss_pred eEEEECCCChhHccccccccCeEEEEecce
No 21
>6D4K_A Probable L,D-transpeptidase 3; Apo-form, TRANSFERASE; 1.32A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
Probab=91.33 E-value=5.2 Score=34.71 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred cEeCCCeEEEecCc-----e------------------EEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCC-Ccc
Q FD01846342_044 2 LTFDGQKLTWPGIG-----I------------------FKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEA-PIR 57 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~------------------~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~-~~~ 57 (168)
+....+.|.++. + . |++.+|+++ -|.|.|.|.|.- .. ...
T Consensus 121 V~~~~~~l~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~G~~~-----------~~Tp~G~~~v~~----k~~~~~ 184 (261)
T 6D4K_A 121 ASISQHTFTVSI-DGVEEGPPPPLPAPHHRVHFGEDGVMPASMGRPE-----------YPTPVGSYTVLS----KERSVI 184 (261)
T ss_dssp EETTTTEEEEEE-TTEECCCCCCSCSSSCCCCCCSTTEEECBCBCTT-----------SCCCCEEEECCE----EEEEEE
T ss_pred eeCCCCEEEEEE-CCEEcCCCCCCCCCCcccccCCCCceecccCCCC-----------CCCCCcEEEEEE----eeceee
Q ss_pred ccccccCCccccceecCCCCCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCCCC--------CCcceee
Q FD01846342_044 58 NAADCDLGPSWGWSTIPRGQAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDSTKG--------YSHGCIE 129 (168)
Q Consensus 58 ~~~~~~~~~~~gi~~~~~~~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~~~--------gS~GCId 129 (168)
..+...|+..-... .....-.+.++|. . ++++||+.... .|+|||-
T Consensus 185 -----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------~-------~g~~iH~~~~~~~~~g~~~~S~GCir 238 (261)
T 6D4K_A 185 -----MDSSSVGIPVDDPD--------GYRLSVDYAVRIT------S-------RGLYVHSAPWALPALGLENVSHGCIS 238 (261)
T ss_dssp -----EEGGGGTCCTTSTT--------CCEEEEEEEEECS------T-------TSCEEEECGGGGGGTTTCCCBSSSEE
T ss_pred -----ccccccCCCCCCCC--------ccceeccceEEee------c-------CCEEEEeCCccccccCCCCCCCCcee
Q ss_pred cchhHHHHHHHhhcccCCCceEEEEEEc
Q FD01846342_044 130 VEPVFFRILKQETEKENGEKTFTVNVKY 157 (168)
Q Consensus 130 l~~~Ff~~l~~~~~~~~~~~~i~v~V~Y 157 (168)
|...=.++|.+....+ -.|.|..
T Consensus 239 l~~~da~~ly~~~~~g-----t~V~I~~ 261 (261)
T 6D4K_A 239 LSREDAEWYYNAVDIG-----DPVIVQE 261 (261)
T ss_dssp ECHHHHHHHHHHCCTT-----CEEEEEC
T ss_pred CCHHHHHHHHHhCCCC-----CcEEEeC
No 22
>4A1K_A PUTATIVE L, D-TRANSPEPTIDASE YKUD; TRANSFERASE, PEPTIDOGLYCAN SYNTHESIS; HET: CME; 1.75A {BACILLUS SUBTILIS} SCOP: b.160.1.1, l.1.1.1, d.7.1.0
Probab=89.24 E-value=1.4 Score=32.24 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CcCCEEEeCC------CCCCCcceeecchhHHHHHHHhhcccCCCceEEEEEEc
Q FD01846342_044 110 KRGGFYIHDS------TKGYSHGCIEVEPVFFRILKQETEKENGEKTFTVNVKY 157 (168)
Q Consensus 110 gR~gFyiHGg------~~~gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~Y 157 (168)
...+++|||. ....|+|||-|...-.++|......+ ..|.|..
T Consensus 117 ~~~~~~~h~~~~~~~~~~~~s~gci~~~~~~~~~l~~~~~~g-----~~v~i~~ 165 (165)
T 4A1K_A 117 SAAHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNG-----TRVTINR 165 (165)
T ss_dssp SSTTCEEECCSCGGGTTSEEESSSEECCHHHHHHHHHHCCTT-----CEEEEEC
T ss_pred cccceEEecCCCchhcCCccCCCccccCHHHHHHHHhhCCCC-----CeEEEeC
No 23
>3ZG4_A ERFK/YBIS/YCFS/YNHG; TRANSFERASE, TRANSPEPTIDATION, PEPTIDOGLYCAN BIOSYNTHESIS, ANTIBIOTIC RESISTANCE; NMR {ENTEROCOCCUS FAECIUM}
Probab=88.70 E-value=10 Score=26.67 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cEeCCCeEEEecCc-----eEEeecCCCccCCchhcCCCCCCCCCEEEEEecccCCCCCccccccccCCccccceecCCC
Q FD01846342_044 2 LTFDGQKLTWPGIG-----IFKATTGLPDLQWPDKQCVPDAAIPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRG 76 (168)
Q Consensus 2 l~FdG~~L~~~~~G-----~~~A~SG~p~~q~~~~Q~~~~GPIPEG~Y~i~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 76 (168)
+....+.|.+++ + +|++..|... .|.|.|.|.|.. .......
T Consensus 10 v~~~~~~~~~~~-~~~~~~~~~~~~g~~~-----------~~tp~g~~~v~~---------------------~~~~~~~ 56 (129)
T 3ZG4_A 10 VDLENQHMWYYK-DGKVALETDIVSGKPT-----------TPTPAGVFYVWN---------------------KEEDATL 56 (129)
T ss_dssp EETTTTEEEEEE-TTEEEEEEECCBCCTT-----------SCCCCSCEECCC---------------------CEESCEE
T ss_pred EECCccEEEEEE-CCEEEEEEEcccCCCC-----------CCCCCEEEEEEE---------------------eeCCcee
Q ss_pred CCCCCcccccccCccceEEeEecCCCCCccCCCCcCCEEEeCCC-----------CCCCcceeecchhHHHHHHHhhccc
Q FD01846342_044 77 QAAGTCEICWANWGYNRIRLESADEKTRKACGGKRGGFYIHDST-----------KGYSHGCIEVEPVFFRILKQETEKE 145 (168)
Q Consensus 77 ~~~g~~~~~~~~WG~~Rv~L~P~~~t~t~~~~~gR~gFyiHGg~-----------~~gS~GCIdl~~~Ff~~l~~~~~~~ 145 (168)
.............-...... ...+.+||+.. ...|+|||-|...=.++|-.....+
T Consensus 57 --------~~~~~~~~~~~~~~~~~~~~-----~~~~~~ih~~~~~~~~~~~~~~~~~s~gci~l~~~d~~~l~~~~~~g 123 (129)
T 3ZG4_A 57 --------KGTNDDGTPYESPVNYWMPI-----DWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKG 123 (129)
T ss_dssp --------EEECSSSCEEEEECSEEEEC-----SSSSCEEEECSSSCCCSTTCHHHHCCSSCEEECTTTHHHHHHHCCTT
T ss_pred --------ccCCCCCCCccCCccceeec-----CCCcEEEEecCCccccCCCcccccCCCcceeCCHHHHHHHHhhCCCC
Q ss_pred CCCceEEEEE
Q FD01846342_044 146 NGEKTFTVNV 155 (168)
Q Consensus 146 ~~~~~i~v~V 155 (168)
..|.|
T Consensus 124 -----t~v~i 128 (129)
T 3ZG4_A 124 -----TPVLV 128 (129)
T ss_dssp -----CEECC
T ss_pred -----CeEEE
No 24
>4Z7A_A Mycobacterium tuberculosis (3,3)L,D-Transpeptidase type 5; peptidoglycan, cell wall biosynthesis, carbapenems, nitrocefin, enzyme kinetics, enzyme structure, antibiotics, cell wall, TRANSFERASE; HET: PEG, PGE; 1.98A {Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)}
Probab=85.05 E-value=2.6 Score=38.50 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCEEEeCCC-------C-CCCcceeecchhHHHHHHHhhcccCCCceEEEEEE
Q FD01846342_044 112 GGFYIHDST-------K-GYSHGCIEVEPVFFRILKQETEKENGEKTFTVNVK 156 (168)
Q Consensus 112 ~gFyiHGg~-------~-~gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~ 156 (168)
+|.+|||-. . ..|||||-|...=.++|-+....+ -.|.|.
T Consensus 337 ~g~~iH~~~~~~~~~g~~~~ShGCi~l~~~da~~~~~~~~~g-----t~V~v~ 384 (451)
T 4Z7A_A 337 NGEFIHANPMSAGAQGNSNVTNGCINLSTENAEQYYRSAVYG-----DPVEVT 384 (451)
T ss_dssp TSCEEEECCC------CTTSSSSCEEECHHHHHHHHHHCCTT-----CEEEEE
T ss_pred CCeEeccCCCccccCCCCCCCCCeecCCHHHHHHHHHhCCCC-----CeEEEE
No 25
>4LZH_A L,D-transpeptidase; structural genomics, APC110661, L, D-transpeptidase, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSFERASE; HET: MSE; 1.9A {Klebsiella pneumoniae subsp. pneumoniae}
Probab=84.62 E-value=3.4 Score=35.61 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCEEEeCCCCC------CCcceeecchhHHHHHHHhhcccCCCceEEEEEEcC
Q FD01846342_044 112 GGFYIHDSTKG------YSHGCIEVEPVFFRILKQETEKENGEKTFTVNVKYV 158 (168)
Q Consensus 112 ~gFyiHGg~~~------gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~Y~ 158 (168)
.+++|||...+ .|||||-|...-...|-.....+ .+|.|.|.
T Consensus 168 ~~~~iHgt~~~~~~g~~~S~GCIrl~~~d~~~l~~~v~~G-----t~V~I~~~ 215 (285)
T 4LZH_A 168 RLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVG-----TRVQFIDE 215 (285)
T ss_dssp TTEEEECCSSSSCTTSBCSSCSEECCHHHHHHHHHHCCTT-----CEEEEECC
T ss_pred CcEEEecCCCCCCCCCcCCCCeecCCHHHHHHHHhhCCCC-----CEEEEeCC
No 26
>6D5A_A L,D-transpeptidase 5; L, D transpeptidation, apo form, TRANSFERASE; HET: PG4; 2.622A {Mycobacterium tuberculosis}
Probab=84.00 E-value=3.3 Score=36.64 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred cCCEEEeCCC-C-------CCCcceeecchhHHHHHHHhhcccCCCceEEEEEE
Q FD01846342_044 111 RGGFYIHDST-K-------GYSHGCIEVEPVFFRILKQETEKENGEKTFTVNVK 156 (168)
Q Consensus 111 R~gFyiHGg~-~-------~gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~ 156 (168)
.+|++|||.. . ..|||||-|...=.++|-+....+ .+|.|.
T Consensus 308 ~~g~~iH~~~~~~~~~g~~~~S~GCv~l~~~~a~~~~~~~~~g-----~~V~i~ 356 (388)
T 6D5A_A 308 NNGEFIHANPMSAGAQGNSNVTNGCINLSTENAEQYYRSAVYG-----DPVEVT 356 (388)
T ss_dssp TTTEEEEECC------------CCSEEECHHHHHHHHHHCCTT-----CEEEEE
T ss_pred CCceEEecCCCcccCCCCCCCCCCCcCCCHHHHHHHHHhCCCC-----CeEEEe
No 27
>5E5L_D L,D-transpeptidase 1; Peptidoglycan synthesis enzyme, cell wall enzyme, TRANSFERASE; 1.89A {Mycobacterium tuberculosis}
Probab=74.11 E-value=12 Score=30.16 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cCCEEEeCCCCC--------CCcceeecchhHHHHHHHhhcccCCCceEEEEEE
Q FD01846342_044 111 RGGFYIHDSTKG--------YSHGCIEVEPVFFRILKQETEKENGEKTFTVNVK 156 (168)
Q Consensus 111 R~gFyiHGg~~~--------gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~ 156 (168)
.+|.+||+.... .|+|||-|...-.++|......+ ..|.|.
T Consensus 174 ~~g~~ih~~~~~~~~~g~~~~s~Gcirl~~~da~~l~~~~~~g-----~~V~i~ 222 (223)
T 5E5L_D 174 WSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVG-----DPIEVV 222 (223)
T ss_dssp TTSCEEEECCCC------CCCCTTCEEECHHHHHHHHHHCCTT-----CEEEEE
T ss_pred CCCeEeeecCCccccCCCCCCCCCceeCCHHHHHHHHHHCCCC-----CeEEEE
No 28
>3VYP_A Probable conserved lipoprotein LPPS; BETA BARREL, YkuD domain, L, D-transpeptidase, beta-lactam binding, TRANSFERASE; HET: MXR, GOL; 1.4A {Mycobacterium tuberculosis} SCOP: b.160.1.1, b.1.18.0
Probab=73.55 E-value=14 Score=30.89 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCEEEeCCCCC--------CCcceeecchhHHHHHHHhhcccCCCceEEEEEEcCCCCC
Q FD01846342_044 112 GGFYIHDSTKG--------YSHGCIEVEPVFFRILKQETEKENGEKTFTVNVKYVSGQQ 162 (168)
Q Consensus 112 ~gFyiHGg~~~--------gS~GCIdl~~~Ff~~l~~~~~~~~~~~~i~v~V~Y~~~~~ 162 (168)
.+++||+.... .|+|||-|...-.++|-.....+ ..|.|.......
T Consensus 192 ~g~~ih~~~~~~~~~g~~~~s~GCi~l~~~d~~~l~~~~~~g-----t~V~i~~~~~~~ 245 (269)
T 3VYP_A 192 SGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRG-----DIVEVVNTVGGT 245 (269)
T ss_dssp TSCEEEECGGGTTTTTTCCCBSSSEEECHHHHHHHHHHCCTT-----CEEEEESCSSCB
T ss_pred CceEEeecCCccCCCCCCCCCCCCccCCHHHHHHHHHhCCCC-----CEEEEEcCCCCc
No 29
>4XXT_A Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain; L, D-transpeptidases, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE; HET: MSE, IMD, EDO; 1.77A {Clostridium acetobutylicum}
Probab=57.86 E-value=16 Score=29.40 Aligned_cols=27 Identities=30% Similarity=0.671 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCEEEe-------------CCCCCCCcceeecchh----HHHHH
Q FD01846342_044 112 GGFYIH-------------DSTKGYSHGCIEVEPV----FFRIL 138 (168)
Q Consensus 112 ~gFyiH-------------Gg~~~gS~GCIdl~~~----Ff~~l 138 (168)
.+++|| .-..+.|+|||-|... +|+.+
T Consensus 209 ~~~~~h~~~~~~~~~~~~~~~~~~~S~Gci~~~~~~~~~l~~~~ 252 (261)
T 4XXT_A 209 GNYLFHSILFDKNGNVVDGTLGASLSHGCIRLAVQNAKYIYDTL 252 (261)
T ss_dssp TTEEEEECBC----CCBCHHHHHHHHTTCEEECHHHHHHHHHHC
T ss_pred CcEEeeeeeeCCCCCeecCcccCccCCCcEEeCHHHHHHHHHhC
No 30
>PF09885.13 ; DUF2112 ; Uncharacterized protein conserved in archaea (DUF2112)
Probab=32.72 E-value=1.1e+02 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred CCCCCCcceeecchh--HHHHHHHhhcccCCCceEEEEEEcCCC
Q FD01846342_044 119 STKGYSHGCIEVEPV--FFRILKQETEKENGEKTFTVNVKYVSG 160 (168)
Q Consensus 119 g~~~gS~GCIdl~~~--Ff~~l~~~~~~~~~~~~i~v~V~Y~~~ 160 (168)
+..+.+-||+.+... +..+|.+.+. -=.|+|.||.+
T Consensus 88 ~~~~~~FGc~GC~rtnel~~~lir~k~------IP~Lel~YP~~ 125 (143)
T Q8TIZ4_METAC/5 88 ENPPTNFGCVGCNRTNELMKYLVRSKE------VPILEVRYPES 125 (143)
T ss_pred CCCCCcccCccchhHHHHHHHHHHhCC------CCEEEeeCCCC
No 31
>PF05037.17 ; DUF669 ; Protein of unknown function (DUF669)
Probab=29.84 E-value=85 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred hhcCCCC-CCCCCEEEEEec
Q FD01846342_044 30 DKQCVPD-AAIPEGNYKLFI 48 (168)
Q Consensus 30 ~~Q~~~~-GPIPEG~Y~i~~ 48 (168)
..+.+.+ -|+|+|.|.+.+
T Consensus 4 d~~~~~~~~~~p~G~Y~~~I 23 (130)
T Q5WIA0_ALKCK/2 4 DYNQVSEFEEFKKGEYEVTV 23 (130)
T ss_pred CccccCccccCCCEEEEEEE
No 32
>PF20374.2 ; DUF6669 ; Family of unknown function (DUF6669)
Probab=21.33 E-value=1.3e+02 Score=24.21 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCCCEEEEEec
Q FD01846342_044 37 AAIPEGNYKLFI 48 (168)
Q Consensus 37 GPIPEG~Y~i~~ 48 (168)
||||+|.|.|.+
T Consensus 122 g~i~~G~W~i~i 133 (156)
T V2Y8S3_9FIRM/1 122 PDSLEGVLKVTI 133 (156)
T ss_pred CCCCCeEEEEEE
No 33
>PF17878.5 ; ssDBP ; Single-stranded DNA-binding protein
Probab=20.39 E-value=1.6e+02 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred CC-CCCCCEEEEEe
Q FD01846342_044 35 PD-AAIPEGNYKLF 47 (168)
Q Consensus 35 ~~-GPIPEG~Y~i~ 47 (168)
++ .|.|+|.|.++
T Consensus 44 ~~~~~y~pG~Y~l~ 57 (72)
T S6ARR9_PSERE/8 44 SEQEVLPTGDYEVP 57 (72)
T ss_pred CCCCcCCCEEEEee
No 34
>1GVP_A GENE V PROTEIN; DNA-BINDING PROTEIN, DNA REPLICATION; 1.6A {Escherichia coli} SCOP: b.40.4.7
Probab=20.05 E-value=1.6e+02 Score=21.44 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CC-CCCCCEEEEEec
Q FD01846342_044 35 PD-AAIPEGNYKLFI 48 (168)
Q Consensus 35 ~~-GPIPEG~Y~i~~ 48 (168)
++ .|.|+|.|.+++
T Consensus 51 ~~~~~y~~G~Y~l~~ 65 (87)
T 1GVP_A 51 EGQPAYAPGLYTVHL 65 (87)
T ss_dssp TTCCCCCSEEEEECG
T ss_pred CCCCCCCCEEEEEch