Query FD01846659_03919 DUF2778 domain-containing protein
Match_columns 119
No_of_seqs 34 out of 36
Neff 3.94616
Searched_HMMs 86581
Date Mon Feb 26 21:17:39 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/9366787.hhr -oa3m ../results/9366787.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10908.12 ; Tlde1_dom ; Tlde1 99.6 7.8E-15 9E-20 103.2 6.6 87 21-110 5-113 (127)
2 7UO8_A Tlde1a; Type VI secreti 99.5 2.7E-13 3.1E-18 101.8 9.3 96 8-110 10-143 (174)
3 PF13645.10 ; YkuD_2 ; L,D-tran 98.3 9.9E-06 1.1E-10 58.8 8.9 94 7-103 43-153 (171)
4 4LPQ_A ErfK/YbiS/YcfS/YnhG fam 97.2 0.0034 3.9E-08 43.5 6.3 115 2-119 89-206 (207)
5 7O21_A Uncharacterized conserv 97.1 0.0038 4.4E-08 49.6 6.7 106 2-110 45-164 (324)
6 6XJ6_A Pgp2; peptidase, LD-car 97.1 0.0072 8.3E-08 46.7 7.7 107 1-110 30-149 (287)
7 PF18925.4 ; DUF5675 ; Family o 96.9 0.0061 7E-08 44.4 6.1 72 8-100 14-96 (125)
8 5BMQ_A ErfK/YbiS/YcfS/YnhG fam 96.8 0.016 1.9E-07 43.2 7.3 104 2-118 129-237 (243)
9 4XZZ_A Conserved hypothetical 96.6 0.031 3.6E-07 45.1 8.3 106 2-110 81-198 (339)
10 4A1K_A PUTATIVE L, D-TRANSPEPT 96.5 0.028 3.2E-07 37.9 6.3 69 42-119 90-164 (165)
11 6V45_A Probable carnitine oper 96.5 0.035 4E-07 41.7 7.4 102 1-119 74-207 (209)
12 PF03734.18 ; YkuD ; L,D-transp 96.3 0.03 3.5E-07 38.6 5.8 111 1-119 4-142 (143)
13 3ZG4_A ERFK/YBIS/YCFS/YNHG; TR 96.2 0.066 7.7E-07 34.8 6.7 100 2-111 9-119 (129)
14 8IKR_A YkuD domain-containing 96.0 0.057 6.6E-07 43.6 7.1 101 2-110 29-138 (236)
15 7KEM_A L,D-transpeptidase 2; T 96.0 0.032 3.7E-07 44.8 5.3 69 42-119 286-376 (408)
16 8DA2_A L,D-transpeptidase fami 95.9 0.1 1.2E-06 45.2 8.6 99 9-118 272-392 (393)
17 4XVO_C L,D-transpeptidase; L, 95.8 0.15 1.7E-06 37.8 7.7 97 2-118 100-222 (223)
18 1ZAT_A L,D-transpeptidase; L, 95.7 0.076 8.8E-07 40.2 6.2 98 1-110 129-239 (250)
19 6RLG_B L,D-transpeptidase 2; b 95.0 0.061 7E-07 42.6 3.9 72 38-119 229-323 (355)
20 4Z7A_A Mycobacterium tuberculo 94.8 0.56 6.5E-06 39.7 9.2 100 2-118 266-384 (451)
21 8QZG_1 YkuD domain-containing 94.2 0.2 2.3E-06 43.3 5.4 69 42-112 160-256 (328)
22 4LZH_A L,D-transpeptidase; str 94.2 0.62 7.2E-06 37.5 7.8 106 2-118 81-213 (285)
23 6D5A_A L,D-transpeptidase 5; L 93.8 0.14 1.6E-06 41.8 3.5 75 42-119 271-354 (388)
24 6D4K_A Probable L,D-transpepti 93.2 0.41 4.7E-06 39.0 5.2 67 42-118 168-260 (261)
25 5E5L_D L,D-transpeptidase 1; P 93.1 0.87 1E-05 34.0 6.5 106 2-118 100-222 (223)
26 3VYP_A Probable conserved lipo 89.4 1.9 2.2E-05 33.5 5.2 106 4-119 119-237 (269)
27 4XXT_A Fusion of predicted Zn- 85.8 3.4 3.9E-05 30.6 4.5 78 42-119 178-259 (261)
28 7KGM_A Putative exported prote 77.8 24 0.00028 33.1 7.8 96 2-109 340-502 (575)
29 7AJO_A L,D-transpeptidase YcbB 67.2 18 0.00021 32.6 4.4 49 61-109 380-440 (523)
30 7BK5_AAA Putative copper resis 55.4 41 0.00047 23.2 3.6 39 9-50 37-75 (97)
31 PF18790.5 ; KfrB ; KfrB protei 54.5 38 0.00044 23.3 3.3 39 6-50 1-39 (61)
32 2C9Q_A COPPER RESISTANCE PROTE 54.3 67 0.00077 22.0 4.5 62 9-82 39-101 (102)
33 1LYQ_A PcoC copper resistance 50.4 47 0.00054 22.9 3.3 42 9-50 40-83 (104)
34 5ICU_A CopC; CopC, metal homeo 47.1 59 0.00068 22.5 3.4 38 9-50 38-75 (102)
35 PF19923.3 ; DUF6386 ; Family o 46.8 75 0.00087 23.7 4.1 65 6-73 72-138 (147)
36 PF04234.16 ; CopC ; CopC domai 44.2 68 0.00079 21.6 3.3 37 9-50 38-75 (95)
37 6NFR_A CopC; CopC, metallochap 43.5 87 0.001 20.7 3.6 39 9-50 61-99 (122)
38 PF17878.5 ; ssDBP ; Single-str 39.9 34 0.00039 23.3 1.3 28 38-66 44-71 (72)
39 PF03562.21 ; MltA ; MltA speci 36.5 54 0.00062 26.6 2.2 42 5-46 91-136 (168)
40 1GVP_A GENE V PROTEIN; DNA-BIN 36.5 82 0.00095 22.0 2.8 33 38-70 51-87 (87)
41 8ACZ_A DNA-Binding protein G5P 33.7 77 0.00089 23.2 2.4 35 38-72 51-89 (99)
42 3CZB_B Putative transglycosyla 31.0 78 0.0009 28.3 2.4 42 5-46 168-209 (351)
43 1PFS_B PF3 SINGLE-STRANDED DNA 26.7 77 0.00089 22.3 1.4 27 42-69 47-73 (78)
44 6YYX_A Aspartyl/asparaginyl be 22.5 40 0.00046 27.3 -0.7 22 97-118 387-408 (429)
45 7ESJ_A membrane-bound lytic mu 21.8 1.2E+02 0.0014 27.3 1.9 42 5-46 191-232 (366)
46 PF11033.12 ; ComJ ; Competence 21.8 4.8E+02 0.0055 18.6 4.7 54 1-67 67-121 (123)
47 1DML_A DNA POLYMERASE PROCESSI 20.5 81 0.00094 28.9 0.7 11 74-84 60-70 (319)
48 6QK4_B Membrane-bound lytic mu 20.1 1.9E+02 0.0022 25.9 2.7 42 5-46 170-211 (348)
No 1
>PF10908.12 ; Tlde1_dom ; Tlde1 domain
Probab=99.58 E-value=7.8e-15 Score=103.22 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=63.3 Template_Neff=9.100
Q ss_pred cccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCcc----------------ceeEe-----eeecCCCCCCCCce
Q FD01846659_039 21 RYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTR----------------AWTMR-----LTPYPENQMCGRGA 79 (119)
Q Consensus 21 ~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG----------------~~alr-----L~P~~~~~~~gRdg 79 (119)
++||.+.++|||+++.+++.||||+|.|.|.........+ ..... +.|....++.+|++
T Consensus 5 a~SG~~~~~n~~~~~~~~~~GPiP~G~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~l~~~~i~~~~~~~~~~R~~ 84 (127)
T Q63JQ6_BURPS/2 5 AFSGRGSGRDNPEATAIEKIGPIPKGIYYIVDRQSGGNLGWLYDLWGQLGYGTSDHTKWFMLWNRDTGDSTYVGKVKRGA 84 (127)
T ss_pred cccCCCCCCCCHHHcccCCCCCCCCceEEEEeCCCCCCchhhHHHhhhcccCCCCCcceeeeeeccCCCCcccCCccccc
Confidence 8999999999999999999999999999993322211111 11122 34444556789999
Q ss_pred eEEccccCCCCCCcccceEEecc-hHHHHHHh
Q FD01846659_039 80 FMIHGESSSHPGEASDGCIILDL-PYRKIIAA 110 (119)
Q Consensus 80 fliHg~~~~~p~~aS~GCIi~~~-~~r~~i~~ 110 (119)
|.||++ +++..|.|||.+.. ..|.++.+
T Consensus 85 f~iH~~---~~~~~S~GCI~~~~~~~~~~l~~ 113 (127)
T Q63JQ6_BURPS/2 85 FRLHPI---GPMGLSEGCITVTNTARFERFAA 113 (127)
T ss_pred eeecCC---CCCCCCceeeeeCCHHHHHHHHH
Confidence 999994 56789999999998 34554443
No 2
>7UO8_A Tlde1a; Type VI secretion system, Salmonella Typhimurium, L, D-carboxypeptidase, D-transpeptidase, peptidoglycan, TOXIN; HET: MED, CME; 1.6A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=99.50 E-value=2.7e-13 Score=101.85 Aligned_cols=96 Identities=26% Similarity=0.423 Sum_probs=66.7 Template_Neff=8.300
Q ss_pred cEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCc-------------c--------------
Q FD01846659_039 8 HTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRT-------------R-------------- 60 (119)
Q Consensus 8 g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~h-------------G-------------- 60 (119)
..|++.+...+. |+||.+.++ ++++|.+++.| ||+|.|.|......... +
T Consensus 10 ~~L~~~~~g~~~-A~SG~~~~~-~~~~q~~~~~G-IP~G~Y~i~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~g~~~ 86 (174)
T 7UO8_A 10 QKLTWPGIGIFK-ATTGLPDLQ-WPDKQCVPDAA-IPEGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCE 86 (174)
T ss_dssp SEEEETTTEEEE-EEESCTTCC-SGGGTTSTTSS-CCSEEEEEECCEEEECCEEETTTTEECCCSSEEECCCGGGGGGGH
T ss_pred cEEEEeCCceEE-eecCCcccC-ChhhcccCCCC-CCCceeEEEeccCCCcccccccccccCccccceecCCCCCCCCce
Confidence 346776555555 999999986 79999999999 99999999765321000 0
Q ss_pred ---cee----EeeeecCC-CCC---CCCceeEEccccCCCCCCcccceEEecchHHHHHHh
Q FD01846659_039 61 ---AWT----MRLTPYPE-NQM---CGRGAFMIHGESSSHPGEASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 61 ---~~a----lrL~P~~~-~~~---~gRdgfliHg~~~~~p~~aS~GCIi~~~~~r~~i~~ 110 (119)
..| ++|.+... +.. ..|++|+||+ +...+|+|||.+.+..++.|++
T Consensus 87 ~~~~~WG~~r~~L~p~~~~~~t~~~~~R~gF~iHg----g~~~gS~GCI~i~~~~~~~l~~ 143 (174)
T 7UO8_A 87 IYWANWGYNRIRLESADEKTRKACGGKRGGFYIHD----STKGYSHGCIEVEPVFFRILKQ 143 (174)
T ss_dssp HHHTTTCSEEEEEEECSHHHHHGGGGCCCCCEEEC----CCSSCCSSSEEECTHHHHHHHH
T ss_pred eeccccceeeEEeeeCCCCCccccCCcccceEECC----CCCCCCcccceeChHHHHHHHH
Confidence 145 44665421 111 2799999998 7778999999999844444433
No 3
>PF13645.10 ; YkuD_2 ; L,D-transpeptidase catalytic domain
Probab=98.33 E-value=9.9e-06 Score=58.80 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=48.2 Template_Neff=9.900
Q ss_pred ccEEEeCC--ce----EeeecccCCcccC-CChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecCC--CCCCCC
Q FD01846659_039 7 AHTFYLNG--AY----QFDARYAGRPGFK-NDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYPE--NQMCGR 77 (119)
Q Consensus 7 ~g~~y~p~--g~----~~e~~ySG~g~~~-nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~~--~~~~gR 77 (119)
.++|.++. ++ ++. ...|..... ..+......+..+.|+|.|.|........ ..++.+..... .....+
T Consensus 43 ~~~l~~~~~~~~~~v~~~~-v~~G~~~~~~~~~~~~~~~g~~~Tp~G~~~i~~~~~~~~--~~~~~~~g~~~~~~~~~~~ 119 (171)
T Q8KBC6_CHLTE/1 43 CKRLFIIDINSGTVIQTAL-VAHGRGSGDIMATSFSNQPGSNKSSLGFYLTENTYIGNN--GYSLVLKGLDQGINDKAEQ 119 (171)
T ss_pred CceEEEEECCCCeEEEEEE-cccccCCCCcccccccCCCCCCCCCCeEEEEeCcEecCC--ceEEEeEecCCCCcccccc
Confidence 45566665 43 555 555655421 01223334444689999999975533211 11222222111 111246
Q ss_pred ceeEEccccCC--------CCCCcccceEEecch
Q FD01846659_039 78 GAFMIHGESSS--------HPGEASDGCIILDLP 103 (119)
Q Consensus 78 dgfliHg~~~~--------~p~~aS~GCIi~~~~ 103 (119)
+++.||+.... +....|+|||.+...
T Consensus 120 ~~i~iH~~~~~~~~~~~~~~~~~~s~GCi~~~~~ 153 (171)
T Q8KBC6_CHLTE/1 120 RGIVIHGADYVSEEYIRQKGRLGRSLGCPALSMD 153 (171)
T ss_pred ceEEEccCccCCHHHHHhhCCCCCCCCccccCHH
Confidence 78999973211 112359999999984
No 4
>4LPQ_A ErfK/YbiS/YcfS/YnhG family protein; MCSG, LD-transpeptidase, Structural Genomics, Midwest Center for Structural Genomics, L, D-transpeptidase, PSI-Biology, TRANSFERASE; HET: MSE; 1.37A {Xylanimonas cellulosilytica}
Probab=97.17 E-value=0.0034 Score=43.49 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred eEEeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecCCCCCCCCceeE
Q FD01846659_039 2 VYKIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYPENQMCGRGAFM 81 (119)
Q Consensus 2 vYdis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~~~~~~gRdgfl 81 (119)
+.|.++..++.=.+..+.....-.......+.-...+...++|.|.|+|....+.........--.+.. .+..+++.
T Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~tp~G~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 165 (207)
T 4LPQ_A 89 EIDLDKQILLAVEDGRVVRIINASSGNGETYEAKGRTYRATTPRGDFAVYMQRDGMHSSTLELGDMWRP---KYFRGGYA 165 (207)
T ss_dssp EEETTTTEEEEEETTEEEEEEECBCBCCCEEEETTEEEECCCCCEEEECCEECSSEECCSSCSSCEEEE---EEEETTEE
T ss_pred EecccccEEEEEECCeEEEEEEccCCCCcceeeCCeEEEEecCCEEEEEEEeecceeccccccCCCccc---eeeeCcEE
Q ss_pred EccccCCCCCCcccceEEecchHHHHHHhc---CCeEEEeC
Q FD01846659_039 82 IHGESSSHPGEASDGCIILDLPYRKIIAAS---SDKILVVE 119 (119)
Q Consensus 82 iHg~~~~~p~~aS~GCIi~~~~~r~~i~~s---Gd~~l~Vv 119 (119)
+|+.....-...|+|||.+..+--+.+|+. ...+.++|
T Consensus 166 ~h~~~~~~~~~~s~Gci~l~~~~~~~~~~~~~~~~g~~v~i 206 (207)
T 4LPQ_A 166 VHGSSSIPTYPASHGCVRVSNAAMNWLWDSWGMPIGTRVLL 206 (207)
T ss_dssp EEECSCCCSSCCBSSSEEECHHHHHCCCCCCCCCTTCEEEE
T ss_pred eccCCCCCCCCCcCCeeecCHHHHHHHHhhcCCCCCCeEEe
No 5
>7O21_A Uncharacterized conserved; Peptidoglycan LD-Carboxypeptidase NTF2, HYDROLASE; HET: EDO, BR; 1.34A {Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)}
Probab=97.08 E-value=0.0038 Score=49.56 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred eEEeeccEEEe-CCc----eEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCC-----CCccceeEeee---e
Q FD01846659_039 2 VYKIKAHTFYL-NGA----YQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFH-----PRTRAWTMRLT---P 68 (119)
Q Consensus 2 vYdis~g~~y~-p~g----~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~-----~~hG~~alrL~---P 68 (119)
+-|.++.+|++ .++ +.+..-....|... .........++|.|+|+|...... ...|...+.+. .
T Consensus 45 ~v~~~~~~l~~~~~~~~~~~~v~~~~~~~G~~~---~~~~~~~~~~TP~G~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~ 121 (324)
T 7O21_A 45 LVDKEQRKLSVFERNGEQIQKITEYPADIGKMG---GNKTKRDDHKTPEGIYFLQERLSQPKIPFSLYGALAFTTNYPNL 121 (324)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECEECCBT---C-----CCCCCCCEEEEEEEEECTTTSCHHHHTTCEEEECCSCH
T ss_pred EEECCCCEEEEEEEcCCeeEEEEEEEccccCCC---CCccccCCCCCCcEEEEeEEecCCCCCChHHhCCcceecCCCCH
Q ss_pred cCCCCCCCCceeEEccccCCC-CCCcccceEEecchHHHHHHh
Q FD01846659_039 69 YPENQMCGRGAFMIHGESSSH-PGEASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 69 ~~~~~~~gRdgfliHg~~~~~-p~~aS~GCIi~~~~~r~~i~~ 110 (119)
.+.......+++.|||..... .+..|+|||.+...-.+.+|+
T Consensus 122 ~~~~~~~~g~~i~iHg~~~~~~~~~~s~GCi~l~~~~~~~l~~ 164 (324)
T 7O21_A 122 FDKRENKTGSGIWLHAIPDSVPLTRGSRGCVVVRNDVIKKLAD 164 (324)
T ss_dssp HHHHHTCCCSCCEEECCCTTSCGGGSBTTCEECCHHHHHHHHT
T ss_pred HHHhccccCCcceeEEEeCCCCCcCCCCcEEEeeHHHHHHHHH
No 6
>6XJ6_A Pgp2; peptidase, LD-carboxypeptidase, peptidoglycan hydrolase, NTF2 fold, HYDROLASE; 1.497A {Campylobacter jejuni subsp. jejuni}
Probab=97.05 E-value=0.0072 Score=46.66 Aligned_cols=107 Identities=14% Similarity=0.047 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CeEEeeccEEEeCCceE-----eeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCC-CCCccceeEeeeecCCCC
Q FD01846659_039 1 WVYKIKAHTFYLNGAYQ-----FDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFF-HPRTRAWTMRLTPYPENQ 73 (119)
Q Consensus 1 wvYdis~g~~y~p~g~~-----~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~-~~~hG~~alrL~P~~~~~ 73 (119)
++-|.+..+|++=.+.. +...+....... .....+...++|.|+|+| ..... ...+|...+.+.+.....
T Consensus 30 i~Vd~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~~~~~~TP~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (287)
T 6XJ6_A 30 VLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLM---GDKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLD 106 (287)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEEESCBCCBS---SCCCSTTSCBCCCEEEEBCCCBCCSCGGGCSCBEEBCCSCHHH
T ss_pred EEEECCCCEEEEEEEeCCeeeEEEEEEEEeeccC---CCceecCCCCCCcEEEeeeeeeCCCCccccceeeeCCCCccch
Q ss_pred C---CCCceeEEccccCCCCC---CcccceEEecchHHHHHHh
Q FD01846659_039 74 M---CGRGAFMIHGESSSHPG---EASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 74 ~---~gRdgfliHg~~~~~p~---~aS~GCIi~~~~~r~~i~~ 110 (119)
. ....|+.||+....... ..|+|||.+.......++.
T Consensus 107 ~~~~~~~~~~~iH~~~~~~~~~~~~~S~Gci~l~~~~~~~l~~ 149 (287)
T 6XJ6_A 107 KVQGKTGGGIWIHGYPLDGSRLDEFKTRGCIALFNNNLEKFAQ 149 (287)
T ss_dssp HHTTCCCCCCEEECCCTTCCCCCTTTSTTCEECCHHHHHHHHH
T ss_pred HhcCCCCCeEEEccccCCCCCCCccCCCCeEEecchHHHHHHH
No 7
>PF18925.4 ; DUF5675 ; Family of unknown function (DUF5675)
Probab=96.94 E-value=0.0061 Score=44.43 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred cEEEeCC---ceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecCCCCCCCCceeEEcc
Q FD01846659_039 8 HTFYLNG---AYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYPENQMCGRGAFMIHG 84 (119)
Q Consensus 8 g~~y~p~---g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~~~~~~gRdgfliHg 84 (119)
|+|++++ ...+| +|.-........||.|+|.+ ..+.++..+ ..+.|. +..+|.+.+||.
T Consensus 14 G~l~~~~~~~~~tlE-----------~~~~~~~~~~s~Ip~G~Y~l-~~~~~~~~~-~~~~l~-----~v~~r~~i~iH~ 75 (125)
T G8CTF9_9CAUD/8 14 GRLTLPNGVELATIE-----------LPDRDNKPRVSRILAGRYRC-TKWSSKKFG-NVWILH-----DTKGRSYILIHK 75 (125)
T ss_pred EEEEECCeEEEEEEe-----------CCCCCCCCCcccccCcEEEE-EEEecCCcc-ceEEEE-----cCCCCCeEEEEC
Q ss_pred ccCCCCCCcc--------cceEEe
Q FD01846659_039 85 ESSSHPGEAS--------DGCIIL 100 (119)
Q Consensus 85 ~~~~~p~~aS--------~GCIi~ 100 (119)
... | .++ +|||..
T Consensus 76 gn~--~-~~~~~~~~~~~~GCIl~ 96 (125)
T G8CTF9_9CAUD/8 76 GNV--A-GDTALGFKTHSAGCILV 96 (125)
T ss_pred CCC--h-hHccccccccCeEEEEe
No 8
>5BMQ_A ErfK/YbiS/YcfS/YnhG family protein; L, D-transpeptidases, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE; HET: SO4, MSE; 2.05A {Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)}
Probab=96.76 E-value=0.016 Score=43.25 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred eEEeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecCCCCCCCCceeE
Q FD01846659_039 2 VYKIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYPENQMCGRGAFM 81 (119)
Q Consensus 2 vYdis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~~~~~~gRdgfl 81 (119)
..|.+...+++=.+..+.....-...++.. .++|.|.|+|...........+-..+. ..++-..|..
T Consensus 129 ~v~~~~~~~~~~~~~~~~~~~~~v~~G~~~---------~~tp~G~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 195 (243)
T 5BMQ_A 129 CVDLTHQTLWVVEDGKRIFEPTVVRTGMAG---------YATQPGAWKIFVKEGTHWSKKYKVWLP----YWQNFNNGEG 195 (243)
T ss_dssp EEETTTTEEEEEETTEEEEEEEEEECCCTT---------SCCCCEEEECCEEEEEEEETTTTEEEE----EEEEEETTEE
T ss_pred EEECCCCEEEEEECCEEEEeeeEeeCCCCC---------CCCCCEEEEEEEEecCCcCccccccce----eeEeccCCce
Q ss_pred Ecc--ccCCCCCCcccceEEecchHHHHHH---hcCCeEEEe
Q FD01846659_039 82 IHG--ESSSHPGEASDGCIILDLPYRKIIA---ASSDKILVV 118 (119)
Q Consensus 82 iHg--~~~~~p~~aS~GCIi~~~~~r~~i~---~sGd~~l~V 118 (119)
||+ +........|+|||-+...-...|| .-|+...++
T Consensus 196 iH~~~~~~~~~~~~s~GCi~~~~~~~~~l~~~~~~g~~V~v~ 237 (243)
T 5BMQ_A 196 LHTTTTYIHEPWIGSHGCVNLLPSDSKKLYEMLDFGDTVQVF 237 (243)
T ss_dssp EEECSSCTTCGGGCCSSSEEECHHHHHHHHHHCCTTCEEEEE
T ss_pred eecCCCcCCCCCcCCCCccccCHHHHHHHHHhCCCCCEEEEE
No 9
>4XZZ_A Conserved hypothetical secreted protein; Csd6, cell shape, L, D-carboxypeptidase, Helicobacter pylori, HP0518, flagellin, peptidoglycan, HYDROLASE; HET: GOL; 2.03A {Helicobacter pylori 26695}
Probab=96.58 E-value=0.031 Score=45.07 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred eEEeeccEEEe-C--Cce--EeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCC--CCccceeEee---eecCC
Q FD01846659_039 2 VYKIKAHTFYL-N--GAY--QFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFH--PRTRAWTMRL---TPYPE 71 (119)
Q Consensus 2 vYdis~g~~y~-p--~g~--~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~--~~hG~~alrL---~P~~~ 71 (119)
+-|.+..+|++ . ||+ .+..-....|... .-.......++|.|.|+|...... ..+|+.++.+ .+.+.
T Consensus 81 ~Vd~~~~~l~~~~~~~g~~~~~~~~~~~~G~~~---~~~~~~gd~~TP~G~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~ 157 (339)
T 4XZZ_A 81 VANKSKPSLEFYEIENNMLKKINSSKALVGSKK---GDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDT 157 (339)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECBCBSBC---SCCCSTTSCBCCCEEEEEEEEECSCCGGGTTCEEEECCSCHHHH
T ss_pred EEECCCCEEEEEEEECCEEEEEEEEEEEecccC---CCCcccCCCCCCcEEEEEEeecccchhhceeeeEEcCCCchhhh
Q ss_pred CCCCCCceeEEccccCCCCC--CcccceEEecchHHHHHHh
Q FD01846659_039 72 NQMCGRGAFMIHGESSSHPG--EASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 72 ~~~~gRdgfliHg~~~~~p~--~aS~GCIi~~~~~r~~i~~ 110 (119)
.......++.|||....... .+|+|||.+.......+|.
T Consensus 158 ~~~~~~~~~~iHg~~~~~~~g~~~S~GCi~~~~~~~~~l~~ 198 (339)
T 4XZZ_A 158 LKKRTGHGIWVHGMPLNGDRNELNTKGCIAIENPLLSSYDK 198 (339)
T ss_dssp HTTCCCCCCEEECCCTTCCCCCSCBSSCEECCHHHHHHHHH
T ss_pred hhccCCCeEEEeccCCCCCCCcCCCCCceeeChHHHHHHHH
No 10
>4A1K_A PUTATIVE L, D-TRANSPEPTIDASE YKUD; TRANSFERASE, PEPTIDOGLYCAN SYNTHESIS; HET: CME; 1.75A {BACILLUS SUBTILIS} SCOP: b.160.1.1, l.1.1.1, d.7.1.0
Probab=96.48 E-value=0.028 Score=37.88 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CCCCCeeEe--cCCCCCCCccceeEeeeecCCCCCCCCceeEEccccCCCC--CCcccceEEecc--hHHHHHHhcCCeE
Q FD01846659_039 42 PLPRGTYTI--GPAFFHPRTRAWTMRLTPYPENQMCGRGAFMIHGESSSHP--GEASDGCIILDL--PYRKIIAASSDKI 115 (119)
Q Consensus 42 p~P~g~Y~i--g~~~~~~~hG~~alrL~P~~~~~~~gRdgfliHg~~~~~p--~~aS~GCIi~~~--~~r~~i~~sGd~~ 115 (119)
++|.|+|+| ......-..+..++.| ...++.+||...... ...|+|||-+.. ..++-.+-.-...
T Consensus 90 ~tp~g~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~~~~~~~~~~s~gci~~~~~~~~~l~~~~~~g~~ 160 (165)
T 4A1K_A 90 QTPTGEFYIINRQRNPGGPFGAYWLSL---------SAAHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNGTR 160 (165)
T ss_dssp CCCCEEEEEEEEEECCCGGGTTEEEEE---------SSTTCEEECCSCGGGTTSEEESSSEECCHHHHHHHHHHCCTTCE
T ss_pred cCCCEEEEEEccccCCCCCccceeeEE---------cccceEEecCCCchhcCCccCCCccccCHHHHHHHHhhCCCCCe
Q ss_pred EEeC
Q FD01846659_039 116 LVVE 119 (119)
Q Consensus 116 l~Vv 119 (119)
.+|+
T Consensus 161 v~i~ 164 (165)
T 4A1K_A 161 VTIN 164 (165)
T ss_dssp EEEE
T ss_pred EEEe
No 11
>6V45_A Probable carnitine operon oxidoreductase caia; SSGCID, Probable carnitine operon oxidoreductase caia, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE; HET: SO4; 2.6A {Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)}
Probab=96.45 E-value=0.035 Score=41.74 Aligned_cols=102 Identities=19% Similarity=0.022 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CeEEeeccEEEe-CCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCC----------------------
Q FD01846659_039 1 WVYKIKAHTFYL-NGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHP---------------------- 57 (119)
Q Consensus 1 wvYdis~g~~y~-p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~---------------------- 57 (119)
++.|.+..+|++ .+|+.+..-....|.... +|.|+|+|......+
T Consensus 74 i~v~~~~~~l~v~~~g~~v~~~~v~~G~~~~------------tp~G~~~i~~k~~~p~~~~~~~~~~~~~~~~~~~~~~ 141 (209)
T 6V45_A 74 IVIDPKKRFLYLVETSTTARRYGIAVGKQGL------------EFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNG 141 (209)
T ss_dssp EEEEGGGTEEEEECSSSEEEEEECCCCTTSS------------SCCSCCEEEEEEESCCBCCCHHHHHHCHHHHGGGTTC
T ss_pred EEEECccCEEEEEeCCEEEEEEEEEecCCCC------------ccCEEEEEEecccCCCCCCCHHHhccCchhhcccccC
Q ss_pred -------CccceeEeeeecCCCCCCCCceeEEccccCCCC--CCcccceEEecchHHHHHHhcCCeEEEeC
Q FD01846659_039 58 -------RTRAWTMRLTPYPENQMCGRGAFMIHGESSSHP--GEASDGCIILDLPYRKIIAASSDKILVVE 119 (119)
Q Consensus 58 -------~hG~~alrL~P~~~~~~~gRdgfliHg~~~~~p--~~aS~GCIi~~~~~r~~i~~sGd~~l~Vv 119 (119)
..|.++++| ..-....++.|||...... ...|+|||.+...--..+|+.=..--.|+
T Consensus 142 ~~~~~~~~~g~~~i~l-----~~~~~~~~i~iHg~~~~~~~g~~~S~GCirl~~~d~~~l~~~~~~gt~V~ 207 (209)
T 6V45_A 142 MDGGPGNPLGSRAMYL-----FQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVV 207 (209)
T ss_dssp BCSSTTCTTTTEEEEE-----EETTEEEEEEEECCCSSCCCTTCGGGCSSCCCHHHHHHHHTTCCTTCCCC
T ss_pred CCCCCCCccceeEEEe-----eeCCcccEEEEecCCChhhccCcccCCccCcChHHHHHHHhhCCCCCEEE
No 12
>PF03734.18 ; YkuD ; L,D-transpeptidase catalytic domain
Probab=96.29 E-value=0.03 Score=38.62 Aligned_cols=111 Identities=13% Similarity=-0.065 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CeEEeeccEEEe-CCceEeeecc----cCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccceeEeeeecCCCCC
Q FD01846659_039 1 WVYKIKAHTFYL-NGAYQFDARY----AGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRAWTMRLTPYPENQM 74 (119)
Q Consensus 1 wvYdis~g~~y~-p~g~~~e~~y----SG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~~alrL~P~~~~~~ 74 (119)
.+-|.++..++. .+|..+..-- ...| .......++|.|.|.| ...............-........
T Consensus 4 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G--------~~~~~~~~tp~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T A6TSD3_ALKMQ/3 4 IVVDRDQQNQASFELNENELNLVSYTLATTG--------IAGDFSFVTTLGSYKSIQKRERFEYLESGTQDIAGYAPFAI 75 (143)
T ss_pred EEEeCCCCEEEEEEcCCCeEEEEEEEeeeec--------cCCCCCccCCcEEEEEeecccceEEeccCcccccceeceEe
Q ss_pred CCCceeEEccccCC--------------------CCCCcccceEEecchHHHHHHhcCCeEE--EeC
Q FD01846659_039 75 CGRGAFMIHGESSS--------------------HPGEASDGCIILDLPYRKIIAASSDKIL--VVE 119 (119)
Q Consensus 75 ~gRdgfliHg~~~~--------------------~p~~aS~GCIi~~~~~r~~i~~sGd~~l--~Vv 119 (119)
..+.++.+|+-... .....|+|||-+..+--..+|+.-..-- .|+
T Consensus 76 ~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Gci~l~~~d~~~l~~~~~~gt~~~v~ 142 (143)
T A6TSD3_ALKMQ/3 76 RFTGGAYIHGVPVAYEEQDGEQVDPGLIESLHTIGTFPRSNMCVRNFTSHAEFLYNWMDSVNGAVIV 142 (143)
T ss_pred eecCCeEeeccccccccCCCcccChhhhhHhhhcCCCCCCCCeEEccHHHHHHHHHhccccCCCeee
No 13
>3ZG4_A ERFK/YBIS/YCFS/YNHG; TRANSFERASE, TRANSPEPTIDATION, PEPTIDOGLYCAN BIOSYNTHESIS, ANTIBIOTIC RESISTANCE; NMR {ENTEROCOCCUS FAECIUM}
Probab=96.19 E-value=0.066 Score=34.83 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred eEEeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccce--eEeeeecCCCCCCCC-
Q FD01846659_039 2 VYKIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRAW--TMRLTPYPENQMCGR- 77 (119)
Q Consensus 2 vYdis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~~--alrL~P~~~~~~~gR- 77 (119)
+.|.++..++.=.+..+...+.......+.+ +|.|+|.+ .........+.. .....+.....+.-.
T Consensus 9 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------tp~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T 3ZG4_A 9 EVDLENQHMWYYKDGKVALETDIVSGKPTTP----------TPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDW 78 (129)
T ss_dssp EEETTTTEEEEEETTEEEEEEECCBCCTTSC----------CCCSCEECCCCEESCEEEEECSSSCEEEEECSEEEECSS
T ss_pred EEECCccEEEEEECCEEEEEEEcccCCCCCC----------CCCEEEEEEEeeCCceeccCCCCCCCccCCccceeecCC
Q ss_pred ceeEEccccCCCC-------CCcccceEEecchHHHHHHhc
Q FD01846659_039 78 GAFMIHGESSSHP-------GEASDGCIILDLPYRKIIAAS 111 (119)
Q Consensus 78 dgfliHg~~~~~p-------~~aS~GCIi~~~~~r~~i~~s 111 (119)
+|..+|+...... ...|.|||.+...-...+|+.
T Consensus 79 ~~~~ih~~~~~~~~~~~~~~~~~s~gci~l~~~d~~~l~~~ 119 (129)
T 3ZG4_A 79 TGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGM 119 (129)
T ss_dssp SSCEEEECSSSCCCSTTCHHHHCCSSCEEECTTTHHHHHHH
T ss_pred CcEEEEecCCccccCCCcccccCCCcceeCCHHHHHHHHhh
No 14
>8IKR_A YkuD domain-containing protein; peptidoglycan, hydrolase, amidase, YukD; 2.9A {Escherichia coli 908519}
Probab=96.05 E-value=0.057 Score=43.62 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred eEEeeccEEEe-CCc----eEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccceeEeee---ecCCC
Q FD01846659_039 2 VYKIKAHTFYL-NGA----YQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRAWTMRLT---PYPEN 72 (119)
Q Consensus 2 vYdis~g~~y~-p~g----~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~~alrL~---P~~~~ 72 (119)
+-|.++++|++ .++ +.+.+---..|...-.| .......++|.|.|+| ...++....--..+++. +.+..
T Consensus 29 ~V~k~~~~L~v~~~~~~~~~lv~~~pvs~G~~~~g~--k~~~~d~~TP~G~y~I~~k~~~p~s~~~~~~~~~yp~~~d~~ 106 (236)
T 8IKR_A 29 QIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGP--KQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRA 106 (236)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEEEEECCSCSSC--CCSSSCCCCCCEEEEESSCCSCCTTTSSSCEECCSSCHHHHH
T ss_pred EEEeCCcEEEEEEecCCeeEEEEEEEEEeccCCCCC--ccccCCCcCCcEEEEEEccccCCCccceeceecCCCChHHHh
Q ss_pred CCCCCceeEEccccCCCCCCcccceEEecchHHHHHHh
Q FD01846659_039 73 QMCGRGAFMIHGESSSHPGEASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 73 ~~~gRdgfliHg~~~~~p~~aS~GCIi~~~~~r~~i~~ 110 (119)
.-....++.|||.. .|.|||-|.+.--+.+|.
T Consensus 107 ~~~~g~~i~IHG~~------~S~GCI~l~~~di~~ly~ 138 (236)
T 8IKR_A 107 HGYEGKYLMIHGDC------VSIGCYAMTNQGIDEIFQ 138 (236)
T ss_dssp TTCCCCCCEEESSC------CCSSCEEECHHHHHHHHH
T ss_pred cCCCCCcEEEecCC------CcCCcccCCHHhHHHHHH
No 15
>7KEM_A L,D-transpeptidase 2; Transpeptidase, Peptidoglycan synthesis, TRANSFERASE; HET: 0JC, DGL, 6CL; 1.77A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)} SCOP: b.160.1.1, b.1.18.0
Probab=95.96 E-value=0.032 Score=44.83 Aligned_cols=69 Identities=17% Similarity=0.407 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCCCeeEecCCCC-----CCCcc-------------ceeEeeeecCCCCCCCCceeEEccccC--CCCC--CcccceEE
Q FD01846659_039 42 PLPRGTYTIGPAFF-----HPRTR-------------AWTMRLTPYPENQMCGRGAFMIHGESS--SHPG--EASDGCII 99 (119)
Q Consensus 42 p~P~g~Y~ig~~~~-----~~~hG-------------~~alrL~P~~~~~~~gRdgfliHg~~~--~~p~--~aS~GCIi 99 (119)
++|.|+|.|..... ....| .++++|. .+|+.|||-.. ...+ ..|+|||-
T Consensus 286 ~Tp~G~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~iH~~~~~~~~~g~~~~S~GCi~ 356 (408)
T 7KEM_A 286 PTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRTDVDWATQIS---------YSGVFVHSAPWSVGAQGHTNTSHGCLN 356 (408)
T ss_dssp CCCBEEEECCCEEEEEEEEGGGGTCCTTSTTCCEEEEEEEEECC---------TTSCEEEECGGGTTTTTTCCCBSSCEE
T ss_pred CCCCcEEEeceeccceeccccccCCCCCCCCCccccccceEEec---------CCCeEeecCCccCCCCCCCCCCccccc
Q ss_pred ecchHHHHHHhcCCeEEEeC
Q FD01846659_039 100 LDLPYRKIIAASSDKILVVE 119 (119)
Q Consensus 100 ~~~~~r~~i~~sGd~~l~Vv 119 (119)
|...--+.+|+.=+.--.|+
T Consensus 357 l~~~da~~l~~~~~~gt~V~ 376 (408)
T 7KEM_A 357 VSPSNAQWFYDHVKRGDIVE 376 (408)
T ss_dssp ECHHHHHHHHHHCCTTCEEE
T ss_pred CCHHHHHHHHHhCCCCCEEE
No 16
>8DA2_A L,D-transpeptidase family protein; cell wall, transpeptidase, peptidoglycan, TRANSFERASE; 2.6A {Acinetobacter baumannii}
Probab=95.95 E-value=0.1 Score=45.22 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred EEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCc----------cceeEeeeecCCCCC---
Q FD01846659_039 9 TFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRT----------RAWTMRLTPYPENQM--- 74 (119)
Q Consensus 9 ~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~h----------G~~alrL~P~~~~~~--- 74 (119)
.+|..||+.+..--...| +..-|+|.|+|+| ....+..++ ....+.+.|-..+..
T Consensus 272 ~~~~~~g~lv~~~pvs~G-----------~~~~pTP~G~~~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~pGp~np~G~~ 340 (393)
T 8DA2_A 272 YLFNSRNQMIASFPATIG-----------STDTPSPTGTYKVVGVARNPWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNI 340 (393)
T ss_dssp EEECTTSCEEEEEECEES-----------CTTSCCCCSCEECCCCCCSCCCCCCC-----------CCCCCSTTSSSTTC
T ss_pred EEEecCCcEEEEcCCccc-----------cCCCCCCCeeeEEEeeeeCCCCCCCHHHhccccCCCCccCCCCCCCCccce
Q ss_pred ---CCCceeEEccccCCC--CCCcccceEEecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 75 ---CGRGAFMIHGESSSH--PGEASDGCIILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 75 ---~gRdgfliHg~~~~~--p~~aS~GCIi~~~---~~r~~i~~sGd~~l~V 118 (119)
+++.|+.|||..... ....|+|||-+.. ...-.....|....++
T Consensus 341 wi~l~~~g~~IHGtp~p~~ig~~~ShGCIRL~n~Da~~L~~~v~~Gt~V~i~ 392 (393)
T 8DA2_A 341 WIGLSKKSFGIHGTPNPSLISKTASHGCIRLTNWDANDLGNKVRSGVTVKFL 392 (393)
T ss_dssp CCCCCCCCCCEECCCCTTCCC----CSCEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred EeecCCCcEEEecCCCcccccCCCCCCeeecCHHHHHHHHHhCCCCCEEEEe
No 17
>4XVO_C L,D-transpeptidase; L, D-transpeptidase, Mycobacterium, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSFERASE; HET: PO4, MSE; 2.6A {Mycobacterium smegmatis}
Probab=95.76 E-value=0.15 Score=37.76 Aligned_cols=97 Identities=28% Similarity=0.327 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred eEEeeccEEEe-CCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCcc-----------------ce
Q FD01846659_039 2 VYKIKAHTFYL-NGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTR-----------------AW 62 (119)
Q Consensus 2 vYdis~g~~y~-p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG-----------------~~ 62 (119)
+.+.++..++. .+|+.+..-.-..| +...++|.|+|+| .......+.+ .+
T Consensus 100 ~v~~~~~~l~~~~~~~~v~~~~v~~G-----------~~~~~Tp~G~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T 4XVO_C 100 VADIDAHTFTVSVDGEVLRKMPASMG-----------KPKFPTPRGTFTALAKEPVVVMDSRTIGIPLSDPEGYKLTVNH 168 (223)
T ss_dssp EEETTTTEEEEEETTEEEEEEECBCB-----------CTTSCCCCEEEECCEEEEEEEEEGGGGTCCTTSTTCCEEEEEE
T ss_pred EEeCCCCEEEEEECCEEEEEEEcccc-----------CCCCCCCCeeEEeeeecCeeEEecccCCCCCCCccccceeccc
Q ss_pred eEeeeecCCCCCCCCceeEEccccCCCCC----CcccceEEecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 63 TMRLTPYPENQMCGRGAFMIHGESSSHPG----EASDGCIILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 63 alrL~P~~~~~~~gRdgfliHg~~~~~p~----~aS~GCIi~~~---~~r~~i~~sGd~~l~V 118 (119)
++.+.. .|+.||+....... ..|+|||.+.. ....+....|+...+.
T Consensus 169 ~~~~~~---------~g~~ih~~~~~~~~~g~~~~S~Gci~l~~~~~~~l~~~~~~gt~V~i~ 222 (223)
T 4XVO_C 169 AVRVTW---------GGVYVHSAPWSVGSQGYANVSHGCINLSPDNAAWYYDMVSVGDPIIVQ 222 (223)
T ss_dssp EEECCT---------TSCEEEECGGGTTTTTTCCCBSSSEEECHHHHHHHHHHCCTTCEEEEE
T ss_pred eEEccc---------CCEEEeecCCcccccCcCCCCCCcccCCHHHHHHHHHhCCCCCeEEEe
No 18
>1ZAT_A L,D-transpeptidase; L, D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, TRANSFERASE; 2.4A {Enterococcus faecium} SCOP: b.160.1.1, d.335.1.1
Probab=95.73 E-value=0.076 Score=40.19 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CeEEeeccEEEe-CCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccce---eEeeeecCCCCCC
Q FD01846659_039 1 WVYKIKAHTFYL-NGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRAW---TMRLTPYPENQMC 75 (119)
Q Consensus 1 wvYdis~g~~y~-p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~~---alrL~P~~~~~~~ 75 (119)
.+.|.++.++++ .++..+..-.-..|.. ..++|.|+|+| .......++++. ...-.+..-...+
T Consensus 129 i~v~~~~~~l~l~~~~~~~~~~~~~~G~~-----------~~~tp~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (250)
T 1ZAT_A 129 IEVDLENQHMWYYKDGKVALETDIVSGKP-----------TTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPI 197 (250)
T ss_dssp EEEETTTTEEEEEETTEEEEEEECBCBCT-----------TSCCCCEEEECCCCEEEEECCBCC--CCCBCCEEEEEEEC
T ss_pred EEEECCCCEEEEEECCEEEEEEEeecCCC-----------CCCCCCEEEEEEEeecCceeecCCCCCCCCcCcccceeec
Q ss_pred CCceeEEccccCCCC--------CCcccceEEecchHHHHHHh
Q FD01846659_039 76 GRGAFMIHGESSSHP--------GEASDGCIILDLPYRKIIAA 110 (119)
Q Consensus 76 gRdgfliHg~~~~~p--------~~aS~GCIi~~~~~r~~i~~ 110 (119)
...++.+||... .. ...|+|||-+...-...+|+
T Consensus 198 ~~~~~~ihg~~~-~~~~~~~~~~~~~s~Gci~l~~~~~~~l~~ 239 (250)
T 1ZAT_A 198 DWTGVGIHDSDW-QPEYGGDLWKTRGSHGCINTPPSVMKELFG 239 (250)
T ss_dssp SSSSCEEEECTT-CSCCSTTHHHHHCBSSSEEECHHHHHHHHH
T ss_pred CCCceEEecCCC-chhhCCcccccCCCCCcccCCHHHHHHHHh
No 19
>6RLG_B L,D-transpeptidase 2; beta lactmase, antibiotic resistance, tuberculosis, ANTIMICROBIAL PROTEIN; HET: EDO, TRS; 1.51000183032A {Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)}
Probab=95.03 E-value=0.061 Score=42.57 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cccCCCCCCeeEe-cCCCCCCCc-----------------cceeEeeeecCCCCCCCCceeEEcc-----ccCCCCCCcc
Q FD01846659_039 38 RDKGPLPRGTYTI-GPAFFHPRT-----------------RAWTMRLTPYPENQMCGRGAFMIHG-----ESSSHPGEAS 94 (119)
Q Consensus 38 kn~Gp~P~g~Y~i-g~~~~~~~h-----------------G~~alrL~P~~~~~~~gRdgfliHg-----~~~~~p~~aS 94 (119)
+..-++|.|+|.| .......+. ..+++++... |+.||| ... +....|
T Consensus 229 ~~~~~Tp~G~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~iHg~~~~~~~~-g~~~~S 298 (355)
T 6RLG_B 229 KDSTPTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRTDVDWATQISYS---------GVFVHSAPWSVGAQ-GHTNTS 298 (355)
T ss_dssp CTTSCCCBEEEECCCEEEEEEEEGGGGTCCTTSTTCCEEEEEEEEECCTT---------SCEEEECGGGTTTT-TTCCCB
T ss_pred CCCCCCCcEEEEeceecceEEEeccccCCCCCCCCCccccccceeEecCC---------ceEeeccccccCCC-CCCCCC
Q ss_pred cceEEecchHHHHHHhcCCeEEEeC
Q FD01846659_039 95 DGCIILDLPYRKIIAASSDKILVVE 119 (119)
Q Consensus 95 ~GCIi~~~~~r~~i~~sGd~~l~Vv 119 (119)
+|||-|...--+.+|+.=..--.|+
T Consensus 299 ~GCi~l~~~~~~~l~~~~~~g~~v~ 323 (355)
T 6RLG_B 299 HGCLNVSPSNAQWFYDHVKRGDIVE 323 (355)
T ss_dssp SSSEEECHHHHHHHHHHCCTTCEEE
T ss_pred cccccCCHHHHHHHHHhCCCCCEEE
No 20
>4Z7A_A Mycobacterium tuberculosis (3,3)L,D-Transpeptidase type 5; peptidoglycan, cell wall biosynthesis, carbapenems, nitrocefin, enzyme kinetics, enzyme structure, antibiotics, cell wall, TRANSFERASE; HET: PEG, PGE; 1.98A {Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)}
Probab=94.81 E-value=0.56 Score=39.68 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred eEEeeccEEEe-CCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCC----------CCccceeEeeeec
Q FD01846659_039 2 VYKIKAHTFYL-NGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFH----------PRTRAWTMRLTPY 69 (119)
Q Consensus 2 vYdis~g~~y~-p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~----------~~hG~~alrL~P~ 69 (119)
.-|.+++.++. .+|+.+..--.-.|..... .-++|.|+|.| ...... .....+++++.
T Consensus 266 ~v~~~~~~l~v~~~g~~v~t~~vs~G~~~~~--------~~~Tp~G~~~i~~k~~~~~~~~~~~gy~~~~~~~~~~~~-- 335 (451)
T 4Z7A_A 266 KAEVSSHRIQVVTDAGVIMDFPCSYGEADLA--------RNVTRNGIHVVTEKYSDFYMSNPAAGYSHIHERWAVRIS-- 335 (451)
T ss_dssp EEEGGGTEEEEEETTEEEEEEECBCCCCSSG--------GGSCCBEEEECCCEEEECCBCCTTTSCSSBCCEEEEECC--
T ss_pred EeeeccceEEEEeCCcEEEEeecccCCCccc--------cccCCCceeeeeeeccceeeeCCCCCCCcccccceEEec--
Q ss_pred CCCCCCCCceeEEcccc----CCCCCCcccceEEecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 70 PENQMCGRGAFMIHGES----SSHPGEASDGCIILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 70 ~~~~~~gRdgfliHg~~----~~~p~~aS~GCIi~~~---~~r~~i~~sGd~~l~V 118 (119)
.+|+.|||.. ..+-...|+|||-|.. .++-+...-|+...++
T Consensus 336 -------~~g~~iH~~~~~~~~~g~~~~ShGCi~l~~~da~~~~~~~~~gt~V~v~ 384 (451)
T 4Z7A_A 336 -------NNGEFIHANPMSAGAQGNSNVTNGCINLSTENAEQYYRSAVYGDPVEVT 384 (451)
T ss_dssp -------TTSCEEEECCC------CTTSSSSCEEECHHHHHHHHHHCCTTCEEEEE
T ss_pred -------CCCeEeccCCCccccCCCCCCCCCeecCCHHHHHHHHHhCCCCCeEEEE
No 21
>8QZG_1 YkuD domain-containing protein; transpeptidase, peptidoglycan, Gluconobacter oxydans, cell wall, antibiotics resistance, lipoprotein, TRANSFERASE; 1.73A {Gluconobacter oxydans}
Probab=94.23 E-value=0.2 Score=43.33 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CCCCCeeEecCCCCCCC-------------ccceeEeeeecCCC---------CCCCCceeEEccc------cCCCCCCc
Q FD01846659_039 42 PLPRGTYTIGPAFFHPR-------------TRAWTMRLTPYPEN---------QMCGRGAFMIHGE------SSSHPGEA 93 (119)
Q Consensus 42 p~P~g~Y~ig~~~~~~~-------------hG~~alrL~P~~~~---------~~~gRdgfliHg~------~~~~p~~a 93 (119)
+||.|+|+| ......+ .|....++.-..-. .-++..++.||+. .. -...+
T Consensus 160 ~TP~G~F~i-~~k~~~~r~~gt~n~~g~~g~g~~~~~v~d~~~~~~~~~w~~~~~~~~~~l~iHgt~~~~~e~~-LG~pa 237 (328)
T 8QZG_1 160 ITPTGVFQN-TADRLGYRAEGTKNKYGIRGIGAKGSRVWDMGWQTAMKGWLPRHETGQIRLEIHATDPQFLEWR-LGHPA 237 (328)
T ss_dssp CCCCEEEEC-CTTBCCEEC---------------CCEEEEEEEEEEEBTTCTTCCEEEEEEEEEECBTTBCGGG-TTSCC
T ss_pred cCCCEEEEe-eccCCCcccCCcccCCCccccccccccccccccccccccccCCcccCceeEEEecCChHHHHhh-cCCCC
Q ss_pred ccceEEecchHHHHHHhcC
Q FD01846659_039 94 SDGCIILDLPYRKIIAASS 112 (119)
Q Consensus 94 S~GCIi~~~~~r~~i~~sG 112 (119)
|+|||-|....-+.+|+.|
T Consensus 238 ShGCIRL~~~da~~L~~~~ 256 (328)
T 8QZG_1 238 SEGCIRIPATMNKFMDHYG 256 (328)
T ss_dssp BSSSEEECHHHHHHHHHHT
T ss_pred CCCceecCHHHHHHHHHhC
No 22
>4LZH_A L,D-transpeptidase; structural genomics, APC110661, L, D-transpeptidase, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSFERASE; HET: MSE; 1.9A {Klebsiella pneumoniae subsp. pneumoniae}
Probab=94.19 E-value=0.62 Score=37.49 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred eEEeeccEEEe-CCce-EeeecccCCcccCCChhcccccccCCCCCC-eeEecCCCCCCCc-------------cceeEe
Q FD01846659_039 2 VYKIKAHTFYL-NGAY-QFDARYAGRPGFKNDSANECVRDKGPLPRG-TYTIGPAFFHPRT-------------RAWTMR 65 (119)
Q Consensus 2 vYdis~g~~y~-p~g~-~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g-~Y~ig~~~~~~~h-------------G~~alr 65 (119)
+-|+++.+||+ .+|+ .+.+-.-+.|.. .-++|.| .|.|......+.. |.....
T Consensus 81 ~Vn~~~~~l~~~~~~~~~v~~~~v~~G~~-----------~~~TP~G~~~~i~~k~~~p~w~~p~~~~~~~~~~g~~~~~ 149 (285)
T 4LZH_A 81 IINSAEMRLYYYPKGTNTVIVLPIGIGQL-----------GKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPA 149 (285)
T ss_dssp EEEGGGTEEEEECTTSSEEEEEECEEC-----------------CCSEEEECCEEEESCCBCCCHHHHHHHHHHTCCCCS
T ss_pred EEeCccceEEEEcCCCcEEEEEeeEeccC-----------CCCCCCCeeEEEEEeccCCCCCCCHHHHHHHHHcCCCCCc
Q ss_pred eeecCCCCCCCC------ceeEEcc--ccCCCCCCcccceEEecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 66 LTPYPENQMCGR------GAFMIHG--ESSSHPGEASDGCIILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 66 L~P~~~~~~~gR------dgfliHg--~~~~~p~~aS~GCIi~~~---~~r~~i~~sGd~~l~V 118 (119)
..|.+..+-.|. .++.||| ....--...|+|||-|.. ...-.....|....++
T Consensus 150 ~~~~g~~nplg~~~~~~~~~~~iHgt~~~~~~g~~~S~GCIrl~~~d~~~l~~~v~~Gt~V~I~ 213 (285)
T 4LZH_A 150 VVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFI 213 (285)
T ss_dssp SBCSSTTCTTTTEEEEEETTEEEECCSSSSCTTSBCSSCSEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ccCCCCCChhHhHhHHccCcEEEecCCCCCCCCCcCCCCeecCCHHHHHHHHhhCCCCCEEEEe
No 23
>6D5A_A L,D-transpeptidase 5; L, D transpeptidation, apo form, TRANSFERASE; HET: PG4; 2.622A {Mycobacterium tuberculosis}
Probab=93.82 E-value=0.14 Score=41.81 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCCCCeeEe-cCCCCCCCccc---e-eEeeeecCCCCCCCCceeEEcccc----CCCCCCcccceEEecchHHHHHHhcC
Q FD01846659_039 42 PLPRGTYTI-GPAFFHPRTRA---W-TMRLTPYPENQMCGRGAFMIHGES----SSHPGEASDGCIILDLPYRKIIAASS 112 (119)
Q Consensus 42 p~P~g~Y~i-g~~~~~~~hG~---~-alrL~P~~~~~~~gRdgfliHg~~----~~~p~~aS~GCIi~~~~~r~~i~~sG 112 (119)
++|.|+|.| .......+.+. + -. ...-..-|..+|+.|||.. ..+....|+|||-|...--..+|+.=
T Consensus 271 ~Tp~G~f~i~~k~~~~~~~~~~~gy~~~---~~~~~~~~~~~g~~iH~~~~~~~~~g~~~~S~GCv~l~~~~a~~~~~~~ 347 (388)
T 6D5A_A 271 VTRNGIHVVTEKYSDFYMSNPAAGYSHI---HERWAVRISNNGEFIHANPMSAGAQGNSNVTNGCINLSTENAEQYYRSA 347 (388)
T ss_dssp CCCBEEEECCCEEEECCBCSTTSCBC------CEEEEEEETTTEEEEECC------------CCSEEECHHHHHHHHHHC
T ss_pred ccCCeEEEeeeeecceeecCCccCCCcc---cceeeeeecCCceEEecCCCcccCCCCCCCCCCCcCCCHHHHHHHHHhC
Q ss_pred CeEEEeC
Q FD01846659_039 113 DKILVVE 119 (119)
Q Consensus 113 d~~l~Vv 119 (119)
+.--.|+
T Consensus 348 ~~g~~V~ 354 (388)
T 6D5A_A 348 VYGDPVE 354 (388)
T ss_dssp CTTCEEE
T ss_pred CCCCeEE
No 24
>6D4K_A Probable L,D-transpeptidase 3; Apo-form, TRANSFERASE; 1.32A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
Probab=93.17 E-value=0.41 Score=39.00 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCCCCeeEe-cCCCCCCCcc-----------------ceeEeeeecCCCCCCCCceeEEcc-----ccCCCCCCcccceE
Q FD01846659_039 42 PLPRGTYTI-GPAFFHPRTR-----------------AWTMRLTPYPENQMCGRGAFMIHG-----ESSSHPGEASDGCI 98 (119)
Q Consensus 42 p~P~g~Y~i-g~~~~~~~hG-----------------~~alrL~P~~~~~~~gRdgfliHg-----~~~~~p~~aS~GCI 98 (119)
++|.|.|+| .......+.+ .++++|. .+|+.+|+ ..+ +-...|+|||
T Consensus 168 ~Tp~G~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~iH~~~~~~~~~-g~~~~S~GCi 237 (261)
T 6D4K_A 168 PTPVGSYTVLSKERSVIMDSSSVGIPVDDPDGYRLSVDYAVRIT---------SRGLYVHSAPWALPAL-GLENVSHGCI 237 (261)
T ss_dssp CCCCEEEECCEEEEEEEEEGGGGTCCTTSTTCCEEEEEEEEECS---------TTSCEEEECGGGGGGT-TTCCCBSSSE
T ss_pred CCCCcEEEEEEeeceeeccccccCCCCCCCCccceeccceEEee---------cCCEEEEeCCcccccc-CCCCCCCCce
Q ss_pred Eecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 99 ILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 99 i~~~---~~r~~i~~sGd~~l~V 118 (119)
-+.. .++-+....|+...+.
T Consensus 238 rl~~~da~~ly~~~~~gt~V~I~ 260 (261)
T 6D4K_A 238 SLSREDAEWYYNAVDIGDPVIVQ 260 (261)
T ss_dssp EECHHHHHHHHHHCCTTCEEEEE
T ss_pred eCCHHHHHHHHHhCCCCCcEEEe
No 25
>5E5L_D L,D-transpeptidase 1; Peptidoglycan synthesis enzyme, cell wall enzyme, TRANSFERASE; 1.89A {Mycobacterium tuberculosis}
Probab=93.15 E-value=0.87 Score=33.98 Aligned_cols=106 Identities=21% Similarity=0.162 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred eEEeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccc---------eeEeeeecCC
Q FD01846659_039 2 VYKIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRA---------WTMRLTPYPE 71 (119)
Q Consensus 2 vYdis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~---------~alrL~P~~~ 71 (119)
..|.+...+++-.+..+...+.-.....+.+ +|.|+|.+ .........+. ...... ..-
T Consensus 100 ~v~~~~~~l~~~~~~~~~~~~~~~~G~~~~~----------tp~G~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (223)
T 5E5L_D 100 VASISAHTFTVSRNGEVLRTMPASLGKPSRP----------TPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYLLT-AHY 168 (223)
T ss_dssp EEETTTTEEEEEESSCEEEEEECEEC---CC----------CCCEEEECCEEEEEEEEEGGGGTCCTTSTTCCEEE-EEE
T ss_pred EEeCCCCEEEEEECCEEEEEEECccCCCCCC----------CCCeeEEeeeceeeEEEecCcceecCCCCCccccc-cee
Q ss_pred CCCCCCceeEEccccCC-CC---CCcccceEEecc---hHHHHHHhcCCeEEEe
Q FD01846659_039 72 NQMCGRGAFMIHGESSS-HP---GEASDGCIILDL---PYRKIIAASSDKILVV 118 (119)
Q Consensus 72 ~~~~gRdgfliHg~~~~-~p---~~aS~GCIi~~~---~~r~~i~~sGd~~l~V 118 (119)
...+..+|..||+.... .. ...|+|||-+.. .+..+....|+...++
T Consensus 169 ~~~~~~~g~~ih~~~~~~~~~g~~~~s~Gcirl~~~da~~l~~~~~~g~~V~i~ 222 (223)
T 5E5L_D 169 AVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVV 222 (223)
T ss_dssp EEECCTTSCEEEECCCC------CCCCTTCEEECHHHHHHHHHHCCTTCEEEEE
T ss_pred eEeccCCCeEeeecCCccccCCCCCCCCCceeCCHHHHHHHHHHCCCCCeEEEE
No 26
>3VYP_A Probable conserved lipoprotein LPPS; BETA BARREL, YkuD domain, L, D-transpeptidase, beta-lactam binding, TRANSFERASE; HET: MXR, GOL; 1.4A {Mycobacterium tuberculosis} SCOP: b.160.1.1, b.1.18.0
Probab=89.38 E-value=1.9 Score=33.48 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred EeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeee---------ecCCCCC
Q FD01846659_039 4 KIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLT---------PYPENQM 74 (119)
Q Consensus 4 dis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~---------P~~~~~~ 74 (119)
+.+++.++.-.+..+...+.-..... ..++|.|.|.|................. ...-...
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~v~~g~~----------~~~tp~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (269)
T 3VYP_A 119 DDNTKILTVRVNGEVVKSMPTSMGKD----------STPTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRTDVDWATQ 188 (269)
T ss_dssp ETTTTEEEEEETTEEEEEEECBCBCT----------TSCCCBEEEECCCEEEEEEEEGGGGTCCSSSSSCCEEEEEEEEE
T ss_pred eCCCCEEEEEECCEEEEEEEcccCCC----------CCCCCCEEEEEeeeecceEeeccccCCCCCCCCCccccccceEE
Q ss_pred CCCceeEEccccCC-CCCC---cccceEEecchHHHHHHhcCCeEEEeC
Q FD01846659_039 75 CGRGAFMIHGESSS-HPGE---ASDGCIILDLPYRKIIAASSDKILVVE 119 (119)
Q Consensus 75 ~gRdgfliHg~~~~-~p~~---aS~GCIi~~~~~r~~i~~sGd~~l~Vv 119 (119)
+...|+.||+.... ..-+ .|.|||-+..+--..+|+.=..--.|+
T Consensus 189 ~~~~g~~ih~~~~~~~~~g~~~~s~GCi~l~~~d~~~l~~~~~~gt~V~ 237 (269)
T 3VYP_A 189 ISYSGVFVHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVE 237 (269)
T ss_dssp CCTTSCEEEECGGGTTTTTTCCCBSSSEEECHHHHHHHHHHCCTTCEEE
T ss_pred ecCCceEEeecCCccCCCCCCCCCCCCccCCHHHHHHHHHhCCCCCEEE
No 27
>4XXT_A Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain; L, D-transpeptidases, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE; HET: MSE, IMD, EDO; 1.77A {Clostridium acetobutylicum}
Probab=85.78 E-value=3.4 Score=30.62 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCCCeeEe--cCCCCCCCccceeEeeeecCCCCCCCCceeEEccccC--CCCCCcccceEEecchHHHHHHhcCCeEEE
Q FD01846659_039 42 PLPRGTYTI--GPAFFHPRTRAWTMRLTPYPENQMCGRGAFMIHGESS--SHPGEASDGCIILDLPYRKIIAASSDKILV 117 (119)
Q Consensus 42 p~P~g~Y~i--g~~~~~~~hG~~alrL~P~~~~~~~gRdgfliHg~~~--~~p~~aS~GCIi~~~~~r~~i~~sGd~~l~ 117 (119)
++|.|+|.+ .........+.......+..+...+-..-+..|+... .-....|+|||-+...--+.+|+.=+..-.
T Consensus 178 ~tp~G~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~S~Gci~~~~~~~~~l~~~~~~gt~ 257 (261)
T 4XXT_A 178 PTITGRFYVQGKGLAFKTSNDVICKYYTQIQGNYLFHSILFDKNGNVVDGTLGASLSHGCIRLAVQNAKYIYDTLPMGTG 257 (261)
T ss_dssp CCCCEEEECCEEEEEC----CCCCEEEEEEETTEEEEECBC----CCBCHHHHHHHHTTCEEECHHHHHHHHHHCCTTCE
T ss_pred CCCcEEEEEeecceeeeecCceeeeeeEeeeCcEEeeeeeeCCCCCeecCcccCccCCCcEEeCHHHHHHHHHhCCCCCE
Q ss_pred eC
Q FD01846659_039 118 VE 119 (119)
Q Consensus 118 Vv 119 (119)
|+
T Consensus 258 v~ 259 (261)
T 4XXT_A 258 IW 259 (261)
T ss_dssp EE
T ss_pred EE
No 28
>7KGM_A Putative exported protein; L, D-transpeptidase, antibiotic, TRANSFERASE; 2.6A {Citrobacter rodentium (strain ICC168)}
Probab=77.80 E-value=24 Score=33.06 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred eEEeeccEEEe-CCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCcc--------------------
Q FD01846659_039 2 VYKIKAHTFYL-NGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTR-------------------- 60 (119)
Q Consensus 2 vYdis~g~~y~-p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG-------------------- 60 (119)
.-|+.+..|+. .||+.+..-....|.. .-+||.|.|+|......|...
T Consensus 340 ~Vni~~~~L~~~~~g~~v~~~~V~vG~~-----------~~~TP~g~~~i~~~~~nP~W~vP~si~~~~i~p~~~~dp~y 408 (575)
T 7KGM_A 340 MVNIPAYSLVYYQNGSQVLASRVIVGRP-----------DRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWNDPGY 408 (575)
T ss_dssp EEEGGGTEEEEEETTEEEEEEEEECBCG-----------GGCCCCEEEECCEEEESCCEECCHHHCCCCCGGGTTTCTTH
T ss_pred EEEcCCcEEEEEECCEEEEEEEEEcCCC-----------CCCCccccceeeEEEeCCCCCCChhHHHhchHHHHHcChhH
Q ss_pred ---------------------------------ceeEeeeecCCCCC-------CCCceeEEccccCCCCCCc------c
Q FD01846659_039 61 ---------------------------------AWTMRLTPYPENQM-------CGRGAFMIHGESSSHPGEA------S 94 (119)
Q Consensus 61 ---------------------------------~~alrL~P~~~~~~-------~gRdgfliHg~~~~~p~~a------S 94 (119)
++.++-.|-..+.+ ..++++.+|+... +.... |
T Consensus 409 l~~~~~~v~~~~~~~~~v~~~~i~w~~~~~~~~~~~~~q~pG~~N~LG~~kf~~~n~~~iylHdtp~-~~~f~~~~r~~S 487 (575)
T 7KGM_A 409 LERHGYTVMRGWNSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPN-HTLFSKDARALS 487 (575)
T ss_dssp HHHTTEEEEC---CCSEECTTTSCGGGCCTTTCCCEEEECSSTTSTTTTEEEECCS-SCCCEECCSC-GGGGGCSCCCCB
T ss_pred HHHcCcEEeeCCCCCCccCHHHCCHHHcCCccCCeeEeeCCCCCCCCeeEEEeCCCCCceEEecCCC-hhHcCCcccccc
Q ss_pred cceEEecchHHHHHH
Q FD01846659_039 95 DGCIILDLPYRKIIA 109 (119)
Q Consensus 95 ~GCIi~~~~~r~~i~ 109 (119)
+|||-+....-+..|
T Consensus 488 hGCVRv~~~~~lA~~ 502 (575)
T 7KGM_A 488 SGCVRVNKASELANM 502 (575)
T ss_dssp SSSEEETTHHHHHHH
T ss_pred CCceecCCHHHHHHH
No 29
>7AJO_A L,D-transpeptidase YcbB; L, D-transpeptidase, TRANSFERASE; HET: S2K, MSE; 1.85A {Vibrio cholerae}
Probab=67.20 E-value=18 Score=32.60 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred ceeEeeeecCCCCC-------CCCceeEEccccCCC-----CCCcccceEEecchHHHHHH
Q FD01846659_039 61 AWTMRLTPYPENQM-------CGRGAFMIHGESSSH-----PGEASDGCIILDLPYRKIIA 109 (119)
Q Consensus 61 ~~alrL~P~~~~~~-------~gRdgfliHg~~~~~-----p~~aS~GCIi~~~~~r~~i~ 109 (119)
++.++..|-+.+.. .+..++.+|+-...+ -+..|+|||=+.+...+..|
T Consensus 380 ~~~~~q~pg~~N~LG~~kf~~~n~~~iylHdT~~~~~f~~~~r~~S~GCiRl~~~~~la~~ 440 (523)
T 7AJO_A 380 PYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQT 440 (523)
T ss_dssp CSEEEECSSTTSTTTTEEEECCCTTCCCEECCSCGGGGGSSCCEEESSCEEETTHHHHHHH
T ss_pred CeEEEeCCCCCCCCceeEEeCCCCCCeeecCCCChHHcCCcccccCCCCceecCHHHHHHH
No 30
>7BK5_AAA Putative copper resistance protein; Copper binding, copper transport, METAL BINDING PROTEIN; 1.54A {Pseudomonas fluorescens (strain SBW25)}
Probab=55.45 E-value=41 Score=23.24 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 9 TFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 9 ~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
+|+ ++|+.+..+..-... +|.....+.-..++++|.|++
T Consensus 37 ~v~-~~g~~v~~~~~~~~~--~~~~~~~~~~~~~l~~G~Y~v 75 (97)
T 7BK5_AAA 37 SLS-KDGTEVAIKGLETPD--ADKKTLVVTPAAPLAAGNYKV 75 (97)
T ss_pred EEE-eCCcEEeccCcccCC--CCCCEEEEeCCCCCCCcEEEE
No 31
>PF18790.5 ; KfrB ; KfrB protein
Probab=54.50 E-value=38 Score=23.30 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred eccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 6 KAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 6 s~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
+...+.|++-..++ ....+....+.|...|.+|||+|.|
T Consensus 1 kqrl~VmNGqr~~q------~~~~g~W~~~kv~~a~~l~~GiY~L 39 (61)
T G4T4Q4_META2/2 1 KQRLLVMNGQRILQ------GESDGAWTSQKVDKAGTLKPGIYNI 39 (61)
T ss_pred CeeEEEeCCceeee------ccCCCceEEeeeccCCCCCCceeee
No 32
>2C9Q_A COPPER RESISTANCE PROTEIN C; ELECTRON TRANSPORT(COPPER BINDING), COPPER TRANSPORT, COPPER PROTEINS, COPPER DISSOCIATION CONSTANTS, METAL-BINDING, ELECTRON TRANSPORT; 1.6A {PSEUDOMONAS SYRINGAE PV. TOMATO} SCOP: b.1.18.17
Probab=54.32 E-value=67 Score=22.03 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEeCCceEee-ecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecCCCCCCCCceeEE
Q FD01846659_039 9 TFYLNGAYQFD-ARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYPENQMCGRGAFMI 82 (119)
Q Consensus 9 ~~y~p~g~~~e-~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~~~~~~gRdgfli 82 (119)
.+..++|+.++ ..-.+.....++.....+...-++++|.|++ ..+..-.++..+.|.=.|.+
T Consensus 39 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Y~v------------~w~~~~~Dg~~~~g~~~F~v 101 (102)
T 2C9Q_A 39 VMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKV------------DWRAVSSDTHPITGSVTFKV 101 (102)
T ss_dssp EEEEETTEEEEEEEECEEEEECSSTTEEEEEESSCCCSEEEEE------------EEEECCTTCCCEEEEEEEEE
T ss_pred EEecCCCcccccceecccccCCCCCCeEEEecCCCCCCeEEEE------------EEEEEcCCCCeeeEEEEEEE
No 33
>1LYQ_A PcoC copper resistance protein; BETA BARREL, IG DOMAIN, METAL BINDING PROTEIN; HET: GOL; 1.5A {Escherichia coli} SCOP: b.1.18.17
Probab=50.36 E-value=47 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEeCCceEe--eecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 9 TFYLNGAYQF--DARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 9 ~~y~p~g~~~--e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
.++.++|..+ .....+.....++.....+.-..++|+|.|++
T Consensus 40 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Y~v 83 (104)
T 1LYQ_A 40 TMTGMKGMSSHSPMPVAAKVAPGADPKSMVIIPREPLPAGTYRV 83 (104)
T ss_dssp EEEEEC---CCCCEECCEEEEECSSTTEEEEEESSCCCSEEEEE
T ss_pred EEecCCCccccCCCCcccccCCCCCCCeEEEeeCCCCCCcEEEE
No 34
>5ICU_A CopC; CopC, metal homeostasis, PcoC, chaperone, cupredoxin; HET: GOL; 1.46A {Methylosinus trichosporium OB3b} SCOP: b.1.18.0
Probab=47.06 E-value=59 Score=22.52 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred EEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 9 TFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 9 ~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
.|+.++|+.+. ... .....+.....+.-. ++++|.|++
T Consensus 38 ~l~~~~g~~v~-~~~--~~~~~~~~~~~~~~~-~l~~G~Y~v 75 (102)
T 5ICU_A 38 SILDSTGKLVV-EGA--KGQADKPRELTLDAP-ELAVGSYVV 75 (102)
T ss_dssp EEECTTCCEEE-EEC--BCCTTCTTEEEEECC-CCCSEEEEE
T ss_pred EEECCCCCEEe-cCC--cccCCCCcEEEEECC-CCCCEEEEE
No 35
>PF19923.3 ; DUF6386 ; Family of unknown function (DUF6386)
Probab=46.80 E-value=75 Score=23.72 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred eccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEecCCCCCCCccceeEeeeecC--CCC
Q FD01846659_039 6 KAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTIGPAFFHPRTRAWTMRLTPYP--ENQ 73 (119)
Q Consensus 6 s~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~ig~~~~~~~hG~~alrL~P~~--~~~ 73 (119)
....|..++|+..-.++.-.....--|+...-...=.+|+|.|++ ..+. ......|.|.|.+ +..
T Consensus 72 ~~~~L~v~sG~L~v~~~~~l~~~~~~~~~~~~~~~i~v~~G~Y~v-~v~~--~~~~~~l~l~~~~~~~~~ 138 (147)
T A0A1E3L672_9BA 72 VQLWINVPSGQLYAGAAENVTGGELEPEDGDSGQYITVEPGVYHL-KIAR--NEQQIEFALLRTEHQQAT 138 (147)
T ss_pred EeEEEEeCCCcEEEecccccCccccCCCCCCCCcEEEeCCEEEEE-EEEE--CCCEEEEEEEeCCccccc
No 36
>PF04234.16 ; CopC ; CopC domain
Probab=44.19 E-value=68 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred EEEeCC-ceEeeecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 9 TFYLNG-AYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 9 ~~y~p~-g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
.|+.++ |+.+. +......+.....+.-. ++|+|.|++
T Consensus 38 ~v~~~~~g~~~~----~~~~~~~~~~~~~~~~~-~l~~G~Y~v 75 (95)
T W0RMI1_9BACT/2 38 TLVAPDGGVRHL----VAAGDPHDVHALIAPVD-ALAPGAYRL 75 (95)
T ss_pred EEECCCCCceee----eccCCCCCCcEEEEECc-cCCCeEEEE
No 37
>6NFR_A CopC; CopC, metallochaperone, copper binding, METAL BINDING PROTEIN; HET: SO4; 1.0A {Pseudomonas fluorescens} SCOP: b.1.18.0
Probab=43.47 E-value=87 Score=20.73 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred EEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe
Q FD01846659_039 9 TFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI 50 (119)
Q Consensus 9 ~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i 50 (119)
.++ .+|+.++....-... ++.+...+.-..++|+|+|+|
T Consensus 61 ~v~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~G~y~v 99 (122)
T 6NFR_A 61 SLS-KDGTEVAIKGLETPD--ADKKTLVVTPAAPLAAGNYKV 99 (122)
T ss_dssp EEE-ETTEEECBCCCBCCS--TTCCEEEECBSSCCCSEEEEE
T ss_pred EEE-eCCcEEeecCcccCC--CCCCEEEEecCCCCCCcEEEE
No 38
>PF17878.5 ; ssDBP ; Single-stranded DNA-binding protein
Probab=39.94 E-value=34 Score=23.25 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred cccCCCCCCeeEecCCCCCCCccceeEee
Q FD01846659_039 38 RDKGPLPRGTYTIGPAFFHPRTRAWTMRL 66 (119)
Q Consensus 38 kn~Gp~P~g~Y~ig~~~~~~~hG~~alrL 66 (119)
++..|.|+|.|++...+.- ..|-..|++
T Consensus 44 ~~~~~y~pG~Y~l~~s~~v-~~g~l~~~~ 71 (72)
T S6ARR9_PSERE/8 44 SEQEVLPTGDYEVPLKGEV-KDGRVVFDL 71 (72)
T ss_pred CCCCcCCCEEEEeeEEEEE-ECCcEEEEe
No 39
>PF03562.21 ; MltA ; MltA specific insert domain
Probab=36.51 E-value=54 Score=26.64 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred eeccEEEeCC----ceEeeecccCCcccCCChhcccccccCCCCCC
Q FD01846659_039 5 IKAHTFYLNG----AYQFDARYAGRPGFKNDSANECVRDKGPLPRG 46 (119)
Q Consensus 5 is~g~~y~p~----g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g 46 (119)
|.+|.|.+|| |+.+..+|+|.-...-..=-..+.++|-++++
T Consensus 91 QGSg~l~l~d~~~~G~~~~v~yag~NG~py~sig~~L~~~G~i~~~ 136 (168)
T Q7VU60_BORPE/1 91 QGSGRVQLTDGPDRGTTIRVAYADHNGQPYASIGRWLIDKGELRAD 136 (168)
T ss_pred CCeEEEEeCCCCCCCcEEEEEEeCcCCCcCccHHHHHHHcCCCChh
No 40
>1GVP_A GENE V PROTEIN; DNA-BINDING PROTEIN, DNA REPLICATION; 1.6A {Escherichia coli} SCOP: b.40.4.7
Probab=36.47 E-value=82 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred cccCCCCCCeeEe-cCCCCCCCccceeE---eeeecC
Q FD01846659_039 38 RDKGPLPRGTYTI-GPAFFHPRTRAWTM---RLTPYP 70 (119)
Q Consensus 38 kn~Gp~P~g~Y~i-g~~~~~~~hG~~al---rL~P~~ 70 (119)
+...|.|+|.|++ ...+.--..|-..+ .|.|..
T Consensus 51 ~~~~~y~~G~Y~l~~~s~~v~~~G~l~~~~~~L~P~~ 87 (87)
T 1GVP_A 51 EGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK 87 (87)
T ss_dssp TTCCCCCSEEEEECGGGEEECTTSSEEESSCCEEECC
T ss_pred CCCCCCCCEEEEEchhhEEECCCCcEEEEeeEEEECC
No 41
>8ACZ_A DNA-Binding protein G5P; nucleoprotein complex, ssDNA binding, DNA BINDING PROTEIN; NMR {Inoviridae}
Probab=33.72 E-value=77 Score=23.22 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred cccCCCCCCeeEe-cCCCCCCCccceeE---eeeecCCC
Q FD01846659_039 38 RDKGPLPRGTYTI-GPAFFHPRTRAWTM---RLTPYPEN 72 (119)
Q Consensus 38 kn~Gp~P~g~Y~i-g~~~~~~~hG~~al---rL~P~~~~ 72 (119)
+...|.|+|.|+| ...+.--..|-..| +|.|....
T Consensus 51 ~~~~~y~~G~Y~l~~~s~~v~~~G~L~l~~~~L~P~~~~ 89 (99)
T 8ACZ_A 51 EGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAKLA 89 (99)
T ss_dssp TSSCCCCSSCBCCCTTSSCSSSSSSSCSSSCCCCCCC--
T ss_pred CCCCCCCCEEEEEehhhEEEcCCCcEEEEEEEEEECchH
No 42
>3CZB_B Putative transglycosylase; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; HET: SO4; 2.5A {Caulobacter crescentus} SCOP: b.52.1.0
Probab=31.00 E-value=78 Score=28.34 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred eeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCC
Q FD01846659_039 5 IKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRG 46 (119)
Q Consensus 5 is~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g 46 (119)
|.+|.|.++||+.+..+|+|.....-..--....++|-++++
T Consensus 168 QGSg~l~~~DG~~~~~~yag~NG~py~sig~~l~~~g~~~~~ 209 (351)
T 3CZB_B 168 QGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGLLPDN 209 (351)
T ss_dssp HCEEEEECTTSCEEEEEEEEECSCCCCCCHHHHHTTTC----
T ss_pred cccEEEEcCCCCEEEEEEEccCCCcceehhHHHHHcCCCCCC
No 43
>1PFS_B PF3 SINGLE-STRANDED DNA BINDING PROTEIN; DNA-BINDING PROTEIN, VIRAL, BACTERIOPHAGE PF3, SINGLE-STRANDED DNA, DNA BINDING PROTEIN; NMR {Pseudomonas phage Pf3} SCOP: b.40.4.7
Probab=26.68 E-value=77 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.125 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred CCCCCeeEecCCCCCCCccceeEeeeec
Q FD01846659_039 42 PLPRGTYTIGPAFFHPRTRAWTMRLTPY 69 (119)
Q Consensus 42 p~P~g~Y~ig~~~~~~~hG~~alrL~P~ 69 (119)
|.|+|.|++...+.- ..|-..|++.+.
T Consensus 47 ~y~~G~Y~l~~s~~v-~~g~L~l~~~~~ 73 (78)
T 1PFS_B 47 VIPAGSYQVPYRINV-NNGRPELAFDFK 73 (78)
T ss_dssp CCCSEEEEEEEEEEE-ETTEEEEEECTT
T ss_pred CCCCEEEEeceEEEE-eCCCeEEEEccc
No 44
>6YYX_A Aspartyl/asparaginyl beta-hydroxylase; Aspartyl/asparaginyl beta-hydroxylase, Dioxygenase, OXIDOREDUCTASE; HET: Q1Z; 1.53A {Homo sapiens}
Probab=22.50 E-value=40 Score=27.32 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred eEEecchHHHHHHhcCCeEEEe
Q FD01846659_039 97 CIILDLPYRKIIAASSDKILVV 118 (119)
Q Consensus 97 CIi~~~~~r~~i~~sGd~~l~V 118 (119)
|++|++.....+|+.+|..++|
T Consensus 387 ~~~fd~~~~h~~~n~~~~~r~~ 408 (429)
T 6YYX_A 387 VLIFDDSFEHEVWQDASSFRLI 408 (429)
T ss_dssp EEEECTTBCEEEEECSSSCEEE
T ss_pred EEEEeCCceeEEEcCCCCcEEE
No 45
>7ESJ_A membrane-bound lytic murein transglycosylase A; membrane-bound lytic murein transglycosylase A, HYDROLASE; 2.06A {Acinetobacter baumannii}
Probab=21.83 E-value=1.2e+02 Score=27.31 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred eeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCC
Q FD01846659_039 5 IKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRG 46 (119)
Q Consensus 5 is~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g 46 (119)
|-+|.|.+|||+.+-.+|+|.....-.+--....++|-+++.
T Consensus 191 QGSg~~~~~dG~~~~~~yag~Ng~~y~sig~~l~~~g~~~~~ 232 (366)
T 7ESJ_A 191 QGSGRVRLADGKQVRLAYAEQNGHPYRAIGRWLVDQGQLKKE 232 (366)
T ss_dssp HSEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTSSCTT
T ss_pred cccEEEEeCCCCEEEEEEEeeCCCcccchhhhhHhcCCCCHh
No 46
>PF11033.12 ; ComJ ; Competence protein J (ComJ)
Probab=21.81 E-value=4.8e+02 Score=18.63 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CeEEeeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCCeeEe-cCCCCCCCccceeEeee
Q FD01846659_039 1 WVYKIKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRGTYTI-GPAFFHPRTRAWTMRLT 67 (119)
Q Consensus 1 wvYdis~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g~Y~i-g~~~~~~~hG~~alrL~ 67 (119)
|. +.....+..+.|+..-..-.+ +.+.. ++|+|.|++ -..+...-.+...-+|+
T Consensus 67 w~-~v~e~~~~~~sg~l~l~~~~~-----~~~~~-------~l~~G~y~vrv~~~g~~~~~~~~y~~~ 121 (123)
T F0P2G4_WEEVC/7 67 AL-RIIKFPFTVVGDLVLSSVPAE-----HTLLV-------SPEEGTYTGYFEICESEEVSEVYYQFT 121 (123)
T ss_pred Ce-EEEEEeeEEeCCeEEEEcCCC-----CcEEE-------cCCCceEEEEEEEEcCCcceeEEEEEE
No 47
>1DML_A DNA POLYMERASE PROCESSIVITY FACTOR; herpes simplex virus, dna synthesis, sliding clamps, PCNA, processivity, DNA BINDING PROTEIN-TRANSFERASE COMPLEX; 2.7A {Human herpesvirus 1} SCOP: d.131.1.2
Probab=20.45 E-value=81 Score=28.86 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred CCCCceeEEcc
Q FD01846659_039 74 MCGRGAFMIHG 84 (119)
Q Consensus 74 ~~gRdgfliHg 84 (119)
+||++|+|||+
T Consensus 60 vFse~GllIH~ 70 (319)
T 1DML_A 60 VMGDRGILIHN 70 (319)
T ss_dssp EEETTEEEEEE
T ss_pred EEcCCcEEEEe
No 48
>6QK4_B Membrane-bound lytic murein transglycosylase A; lytic transglycosylase, peptidoglycan, cell division, bacterial pathogenesis, Burkholderia pseudomallei, LYASE; 1.73A {Burkholderia pseudomallei}
Probab=20.09 E-value=1.9e+02 Score=25.94 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred eeccEEEeCCceEeeecccCCcccCCChhcccccccCCCCCC
Q FD01846659_039 5 IKAHTFYLNGAYQFDARYAGRPGFKNDSANECVRDKGPLPRG 46 (119)
Q Consensus 5 is~g~~y~p~g~~~e~~ySG~g~~~nnP~~~~vkn~Gp~P~g 46 (119)
|.+|.|.++||+.+..+|+|.....-..--.....+|-+++.
T Consensus 170 QGSg~l~~~dG~~~~v~yag~Ng~~y~sig~~l~~~G~i~~~ 211 (348)
T 6QK4_B 170 QGSGRVVLDDGTVMRVGYGGTNNQPYRSIGKWLLDHGELGAG 211 (348)
T ss_dssp HSCEEEEETTSCEEEEEEEEECCCCCCCHHHHHHHTTSSCTT
T ss_pred cCcEEEEcCCCCEEEEEEcccCCCcccchhhhhHhcCCCCcc