Query FD01849383_03612 type IV secretion protein Rhs
Match_columns 104
No_of_seqs 126 out of 490
Neff 7.57991
Searched_HMMs 86581
Date Mon Feb 26 21:16:32 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6787438.hhr -oa3m ../results/6787438.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14412.10 ; AHH ; A nuclease 99.7 9E-16 1E-20 102.4 7.4 96 1-101 16-130 (139)
2 PF09533.14 ; DUF2380 ; Predict 96.7 0.0061 7E-08 44.3 4.7 79 1-98 99-178 (189)
3 PF21648.1 ; M1E1E6-like ; Inte 90.9 1.2 1.4E-05 29.5 4.6 37 62-99 64-100 (104)
4 3FY6_D Integron cassette prote 88.1 2.4 2.8E-05 29.2 4.5 37 62-99 73-109 (126)
5 PF15635.10 ; Tox-GHH2 ; GHH si 85.3 0.75 8.7E-06 29.8 0.8 13 3-15 2-14 (105)
6 PF05120.16 ; GvpG ; Gas vesicl 84.6 11 0.00013 23.3 5.7 38 64-102 31-68 (72)
7 2LSE_A Four Helix Bundle Prote 75.5 22 0.00025 22.9 4.8 38 64-104 6-43 (101)
8 PF13391.10 ; HNH_2 ; HNH endon 63.4 2.6 3E-05 22.3 -1.0 40 1-42 10-49 (62)
9 PF05766.16 ; NinG ; Bacterioph 61.9 65 0.00075 23.0 5.6 79 1-101 108-191 (197)
10 PF07487.17 ; SopE_GEF ; SopE G 58.5 97 0.0011 21.9 7.0 83 17-101 39-133 (134)
11 6N9H_A amantadine-binding prot 47.0 1.2E+02 0.0014 19.6 5.2 41 56-101 1-41 (80)
12 2JOK_A Putative G-nucleotide e 44.9 2.1E+02 0.0024 21.6 8.6 90 8-101 66-167 (186)
13 6E4J_A Uncharacterized protein 42.5 90 0.001 20.1 3.4 36 57-98 25-60 (80)
14 1GZS_D SOPE; TOXIN/CELL CYCLE, 41.2 2.2E+02 0.0026 21.0 7.8 83 17-101 68-162 (165)
15 7P9K_B DUF262 domain-containin 40.9 30 0.00034 28.5 1.4 37 1-42 470-516 (587)
16 PF19551.3 ; DUF6074 ; Family o 38.2 1.6E+02 0.0018 18.4 5.9 39 63-102 33-71 (81)
17 8FJG_A H12; De novo protein, H 37.4 1.9E+02 0.0022 19.1 6.2 42 61-103 58-100 (109)
18 PF14357.10 ; DUF4404 ; Domain 37.4 1.7E+02 0.0019 18.4 4.3 37 66-103 1-37 (85)
19 PF06037.15 ; DUF922 ; Bacteria 34.0 1.3E+02 0.0015 20.2 3.4 63 37-103 62-134 (150)
20 8HL4_L18P 50S ribosomal protei 33.5 3E+02 0.0034 20.1 7.0 66 22-101 123-192 (193)
21 PF18822.5 ; CdvA ; CdvA-like c 32.3 2.4E+02 0.0027 18.7 5.6 37 64-101 57-93 (123)
22 6NZ1_C Design construct XXA_GV 32.1 2.4E+02 0.0028 18.7 6.2 44 56-101 1-45 (98)
23 PF19903.3 ; DUF6376 ; Family o 31.6 2.8E+02 0.0032 19.2 4.9 40 61-101 68-115 (116)
24 PF11458.12 ; Mistic ; Membrane 31.6 2.3E+02 0.0026 18.2 4.0 37 61-103 34-70 (74)
25 7F6J_C PDZ domain-containing p 31.5 2.7E+02 0.0031 19.7 4.6 46 56-103 12-57 (133)
26 PF11527.12 ; ARL2_Bind_BART ; 31.0 2.1E+02 0.0024 18.4 3.9 30 58-92 47-76 (118)
27 6DKM_D DHD131_B; Computational 30.9 2.2E+02 0.0025 17.8 5.1 35 63-98 22-59 (79)
28 PF07820.16 ; TraC ; TraC-like 29.9 2.6E+02 0.003 18.4 4.3 34 68-102 27-62 (84)
29 PF11867.12 ; T1RH-like_C ; Typ 28.3 3.8E+02 0.0043 20.7 5.4 41 59-101 198-238 (334)
30 3BHP_B UPF0291 protein ynzC; N 27.9 2.3E+02 0.0027 17.2 5.8 39 64-103 4-49 (60)
31 6XOR_A Protein swallow; coiled 27.7 2.7E+02 0.0031 17.8 5.4 37 61-101 28-67 (71)
32 6DMP_B Designed orthogonal pro 27.6 2.6E+02 0.003 17.7 4.4 33 64-101 24-56 (82)
33 5Y2H_D Nonstructural protein 4 27.2 2.3E+02 0.0026 16.9 3.1 20 84-103 2-21 (51)
34 PF10520.13 ; Lipid_desat ; Lip 26.9 65 0.00075 22.9 1.1 22 1-26 33-54 (178)
35 6TH6_BQ 50S ribosomal protein 26.4 3.3E+02 0.0038 20.2 4.6 66 34-102 126-195 (201)
36 5FBM_A DNA-binding protein HU; 26.1 2.7E+02 0.0031 17.3 5.0 33 67-103 5-37 (99)
37 PF08838.14 ; DUF1811 ; Protein 25.8 2.2E+02 0.0025 19.2 3.3 20 83-102 6-25 (99)
38 5L3R_A Signal recognition part 25.3 3.8E+02 0.0044 19.8 4.8 44 58-101 3-46 (301)
39 5J10_A peptide design 2L4HC2_2 25.3 3.2E+02 0.0037 17.9 4.6 41 56-101 1-41 (81)
40 1YGM_A hypothetical protein BS 25.2 3.3E+02 0.0039 19.1 4.0 37 61-103 70-106 (118)
41 PF09677.14 ; TrbI_Ftype ; Type 25.0 3.2E+02 0.0037 17.8 5.4 37 66-103 31-67 (103)
42 PF13108.10 ; DUF3969 ; Protein 24.6 3.1E+02 0.0036 18.1 3.8 69 22-104 19-89 (102)
43 7CIK_B Flagellar M-ring protei 24.6 48 0.00055 23.6 0.1 40 1-40 6-47 (173)
44 5J0J_C designed protein 2L6HC3 24.4 3.3E+02 0.0038 17.7 5.1 40 56-101 1-40 (79)
45 8AU1_L Putative tail sheath pr 24.1 2.6E+02 0.003 25.2 4.2 38 65-103 597-636 (689)
46 PF04316.17 ; FlgM ; Anti-sigma 23.6 2.4E+02 0.0028 15.9 3.6 25 67-92 26-52 (54)
47 2YXY_A Hypothetical conserved 23.2 2.6E+02 0.0029 19.4 3.3 20 83-102 14-33 (115)
48 1SF9_A yfhH hypothetical prote 23.2 4.4E+02 0.005 18.8 4.4 32 65-102 20-51 (128)
49 PF02609.20 ; Exonuc_VII_S ; Ex 23.1 2.5E+02 0.0029 15.9 5.1 35 68-103 6-43 (52)
50 5UDO_D A118 serine integrase; 22.7 5E+02 0.0057 19.2 5.5 37 64-101 224-260 (328)
51 PF00216.25 ; Bac_DNA_binding ; 22.5 2.8E+02 0.0033 16.3 5.0 34 67-104 4-37 (90)
52 7XVM_V Histone H5; linker hist 22.5 2.8E+02 0.0032 20.3 3.6 35 55-94 23-57 (190)
53 4QS8_A Hexokinase-1; Hexokinas 22.2 5.6E+02 0.0064 20.7 5.5 45 54-103 4-48 (474)
54 6S7O_E Dolichyl-diphosphooligo 22.0 5.6E+02 0.0064 22.1 5.7 38 64-102 559-596 (607)
55 PF05332.15 ; Vesi_VP2 ; Vesivi 21.9 1.6E+02 0.0018 20.1 2.1 17 19-36 67-83 (105)
56 3FXD_A Protein IcmQ; 4 helix b 21.7 3.1E+02 0.0036 16.5 5.1 41 62-103 6-46 (57)
57 PF15652.10 ; Tox-SHH ; HNH/End 21.3 1.8E+02 0.0021 17.5 2.2 34 1-41 3-38 (97)
58 4ZI3_C Cilia- and flagella-ass 21.1 3.8E+02 0.0044 17.9 3.8 31 58-93 56-86 (135)
59 7VKV_X zeta-subunit; soluble p 20.4 4.2E+02 0.0048 17.4 5.0 37 67-104 64-102 (104)
60 2K0S_A ADP-ribosylation factor 20.4 4.3E+02 0.005 17.6 4.2 43 58-103 60-102 (130)
61 7OQ4_Z RNAP inhibitory protein 20.4 4.9E+02 0.0056 18.9 4.2 47 58-104 6-65 (149)
62 5CW4_B Protein FAM175B; Metal 20.3 4.8E+02 0.0056 20.5 4.7 41 61-102 227-267 (289)
63 6DM9_C DHD15_extended_A; Compu 20.1 3.9E+02 0.0045 17.0 5.3 44 58-103 17-60 (78)
64 4UA8_A Carbohydrate ABC transp 20.0 3.3E+02 0.0038 20.5 3.7 38 66-104 360-400 (400)
No 1
>PF14412.10 ; AHH ; A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=99.65 E-value=9e-16 Score=102.39 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=70.0 Template_Neff=9.200
Q ss_pred CCCccccccHHHHhcCHHHH---------------HHHHcCCCCCCCcccCccCCCCHHHHHhhCCCCcCCCChHHHHHH
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQ---------------EAVNRGIYNPNGATNGAFLPRTAAESLSTGKPLHSGNHLASYYDA 65 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~---------------~~~~~G~~din~~~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~ 65 (104)
++|+|||||.+......... .+.+.| |++| .|+++||.....+..++++.|.|+|. .|+..
T Consensus 16 ~~~~HHiip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~N~i~LP~~~~~~~~~~~~~H~g~H~-~Y~~~ 91 (139)
T Q2SED4_HAHCH/1 16 GNQVHHIVNISSVRNGIEEIAKDLPDLRVLIVNGLLDEKYN-INYK--DNSLILPTQRSASAKTGLPSHYGSHP-SYSKD 91 (139)
T ss_pred ccCceeeecHHHHHhchhhhhcCCchHhHHHHcchHHHhcC-CCCC--CCeeecCCchHHHhhhCCCcccCCCh-HHHHH
Confidence 47999999999876422111 333389 9999 99999999877777788999999997 99999
Q ss_pred H----HHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 66 A----ENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 66 V----~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
| ...|+.+.... ....++..++...+.++..+++.
T Consensus 92 v~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~ 130 (139)
T Q2SED4_HAHCH/1 92 ILQHVKQALQPYKKIA-NEMKKNKPHSKPDPVELKKKLED 130 (139)
T ss_pred HHHHHHHHHHHHHHHH-HHchhcCcccCCCHHHHHHHHHH
Confidence 9 99999888777 43323344455555555555444
No 2
>PF09533.14 ; DUF2380 ; Predicted lipoprotein of unknown function (DUF2380)
Probab=96.73 E-value=0.0061 Score=44.30 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCCccccccHHHHhcCHHHHHHHHcCCCCCCCcccCccCCCCHHHHHhhCCCCcCCCChHHHHHHHHHHHHHHH-HHhhh
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNRGIYNPNGATNGAFLPRTAAESLSTGKPLHSGNHLASYYDAAENVLDAAT-NKIGN 79 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~G~~din~~~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~V~~~L~~i~-~~~~~ 79 (104)
.++.|||+|++..- ...|+. .| +||+. -.+.+|.. .-..+|.|+-...|+....+-+++-. ..+
T Consensus 99 ~~e~HHifPQ~~~~-~~~F~~---~G-InIhd--ytv~i~~~------~H~~IH~G~~gg~WN~~W~~fi~~n~~~a~-- 163 (189)
T E3FZI5_STIAD/5 99 RLIKHHLFPQEARL-ATWFRA---NG-INIHE--WTMLVPEQ------VHLRVHRGARGGLWNEAWRQYYEANSARPV-- 163 (189)
T ss_pred ccccccccchHHHH-HHHHHH---CC-Ccccc--eeeecCHH------HhhhhccccccccHHHHHHHHHHHcCCCCC--
Q ss_pred hccCCHHHHHHHHHHHHHH
Q FD01849383_036 80 LARATDEQILSKIHAAERL 98 (104)
Q Consensus 80 ~~~~~~~~~~~~i~~l~~~ 98 (104)
|.+++.+...++..+
T Consensus 164 ----T~~eI~~~a~~L~~r 178 (189)
T E3FZI5_STIAD/5 164 ----SREELLSKAFELALR 178 (189)
T ss_pred ----CHHHHHHHHHHHHHH
No 3
>PF21648.1 ; M1E1E6-like ; Integron cassette protein
Probab=90.92 E-value=1.2 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Q FD01849383_036 62 YYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLM 99 (104)
Q Consensus 62 Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~i 99 (104)
|-..+...|+.|+.++ +.+.++.+++.+++++|.+.|
T Consensus 64 yP~~l~~~le~lW~~~-~~~~l~~ee~Q~~l~ela~WI 100 (104)
T A0A091AID3_9PR 64 PPAILNDLLEHVWEAW-RNGYLKDESVDQELHAVEEWL 100 (104)
T ss_pred CchHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHH
No 4
>3FY6_D Integron cassette protein; Novel, Integron cassette protein, Vibrio cholerae, Oyster pond, Woodshole, USA, UNKNOWN FUNCTION, Structural Genomics, PSI-2, Protein; HET: MSE; 2.1A {Vibrio cholerae}
Probab=88.13 E-value=2.4 Score=29.21 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Q FD01849383_036 62 YYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLM 99 (104)
Q Consensus 62 Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~i 99 (104)
|-..+...|+.|+.++ +.+.++.+++.+++++|.+.|
T Consensus 73 yP~~l~~~le~lW~~~-~~~~l~~ee~Q~~L~ela~WI 109 (126)
T 3FY6_D 73 PPEITQNLFQHAWLEW-RKGALDNDEVTRELELVAQWV 109 (126)
T ss_dssp CBTTHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHH
No 5
>PF15635.10 ; Tox-GHH2 ; GHH signature containing HNH/Endo VII superfamily nuclease toxin 2
Probab=85.26 E-value=0.75 Score=29.76 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CccccccHHHHhc
Q FD01849383_036 3 AAHHLLPTHIAAN 15 (104)
Q Consensus 3 qaHHiIP~~~~~~ 15 (104)
++|||||...++.
T Consensus 2 t~hHivpd~~fr~ 14 (105)
T G4T2Y2_META2/2 2 TPDHLIDVKSFVE 14 (105)
T ss_pred CCCceeeHHHhcc
No 6
>PF05120.16 ; GvpG ; Gas vesicle protein G
Probab=84.64 E-value=11 Score=23.28 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
..|...|.++...+ +.|.+|.++..+.-..+...++..
T Consensus 31 ~~i~~~L~eL~~~~-e~GeIseeEy~~~e~~Ll~rl~~~ 68 (72)
T Q2JJS5_SYNJB/2 31 ENLQKELTALQIQL-DLGEIDEETYARREEEILLALEAL 68 (72)
T ss_pred HHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
No 7
>2LSE_A Four Helix Bundle Protein; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, DE NOVO PROTEIN; NMR {artificial gene}
Probab=75.50 E-value=22 Score=22.93 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhC
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHALN 104 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L~ 104 (104)
..+-++|++|.+.. ..| .+++.+++|.++...++..|.
T Consensus 6 kklleklekildev-tdg--apdearerieklakdvkdele 43 (101)
T 2LSE_A 6 KKLLEKLEKILDEV-TDG--APDEARERIEKLAKDVKDELE 43 (101)
T ss_dssp HHHHHHHHHHHHHH-HHT--SCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHH
No 8
>PF13391.10 ; HNH_2 ; HNH endonuclease
Probab=63.40 E-value=2.6 Score=22.31 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCCccccccHHHHhcCHHHHHHHHcCCCCCCCcccCccCCCC
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNRGIYNPNGATNGAFLPRT 42 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~G~~din~~~Ngi~LP~~ 42 (104)
..++.||+|.......... ...... .++++..|++.|...
T Consensus 10 ~~~~ahi~~~~~~~~~~~~-~~~~~~-~~~~~~~N~i~l~~~ 49 (62)
T Q5KQA0_CRYNJ/1 10 SCTASHIVPASRPDIYDCF-YGDGGG-LPMFRPSAGLLLRDD 49 (62)
T ss_pred ceeEEEEecccchhhhhhh-cCCCCC-CCCCChHHhEEECch
No 9
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=61.86 E-value=65 Score=22.96 Aligned_cols=79 Identities=13% Similarity=-0.019 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCCccccccHHHHhcCHHHHHHHHcCCCCCCCcccCccCCCCHHHHHhhCCCCcCCCChHHHHHHHHHHH-HHHHHHhhh
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNRGIYNPNGATNGAFLPRTAAESLSTGKPLHSGNHLASYYDAAENVL-DAATNKIGN 79 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~G~~din~~~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~V~~~L-~~i~~~~~~ 79 (104)
.+++||++|... .+ -.-.+..|++.|=..-.. ...|... .|...+...+ .+..+.+ .
T Consensus 108 ~~~~~Hi~~~~~------------~~-~~~~~~~N~~~lC~~Ch~-------~~~~~~~-~~~~~l~~~~g~~~~~~l-~ 165 (197)
T A0A2U2GVX8_YER 108 QYHAGHYLTVGA------------NP-ELRFNEDNCHRQCAPCNN-------HLSGNIE-KYTPNLIAKIGQVRFDIL-M 165 (197)
T ss_pred cceeccccCcCC------------Ch-hhcCChhhcHHhCHHHHh-------hccCCHH-hhHHHHHHHHCHHHHHHH-h
Q ss_pred hc----cCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 80 LA----RATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 80 ~~----~~~~~~~~~~i~~l~~~ir~ 101 (104)
.. +++.+++.+.+..+...++.
T Consensus 166 ~~~~~~k~~~~~~~~~~~~~~~~~~~ 191 (197)
T A0A2U2GVX8_YER 166 GPHEMTNYRRDDYIRIRDEYRAKTKA 191 (197)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHHHH
No 10
>PF07487.17 ; SopE_GEF ; SopE GEF domain
Probab=58.47 E-value=97 Score=21.85 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHcCCCCCCCcccCccCCCCHHH---------HHhhCCCCcCCCChH--HHHHHHHHHHHHHHHHh-hhhccCC
Q FD01849383_036 17 SLIQEAVNRGIYNPNGATNGAFLPRTAAE---------SLSTGKPLHSGNHLA--SYYDAAENVLDAATNKI-GNLARAT 84 (104)
Q Consensus 17 ~~l~~~~~~G~~din~~~Ngi~LP~~~~~---------a~~~gl~~H~G~H~~--~Y~~~V~~~L~~i~~~~-~~~~~~~ 84 (104)
.+=..+.+.| ..-.. .|||+.|+..+. ......+.+...+.. .+..++++.+...-+.+ .+.+..+
T Consensus 39 eiG~aA~~~G-L~g~~-K~gvf~P~GaGAnpf~t~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~~e~~~~~ 116 (134)
T Q7P1B7_CHRVO/1 39 ELGEAARAAG-LPGEN-KHGVFIPSGDGASPFVNYLLIPVQKEFGHRLRNESQQRLFRDFARQLSMELVAPHAAERGWEP 116 (134)
T ss_pred HHHHHHHHcC-CCCcc-cCCeeCCCCCCCCchhHHHHHHHHHHhhHhhcCHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred HHHHHHHHHHHHHHHHH
Q FD01849383_036 85 DEQILSKIHAAERLMKH 101 (104)
Q Consensus 85 ~~~~~~~i~~l~~~ir~ 101 (104)
+.+...++..+.+..+.
T Consensus 117 p~~F~~~L~~i~~~~~~ 133 (134)
T Q7P1B7_CHRVO/1 117 PAAFAARLEAVGRPWLA 133 (134)
T ss_pred HHHHHHHHHHHHhHHHh
No 11
>6N9H_A amantadine-binding protein; helical bundle, trimer, amantadine-binding protein, DE NOVO PROTEIN; HET: 308; 1.039A {synthetic construct}
Probab=47.04 E-value=1.2e+02 Score=19.64 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=0.0 Template_Neff=2.800
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 56 GNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 56 G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
|+|-+.-...+...|+++++.+ + -.....+++.....++.+
T Consensus 1 GSHMG~t~~eir~aleeler~l-~----Elrk~~eel~~~Leelek 41 (80)
T 6N9H_A 1 GSHMGDAQDKLKYLVKQLERAL-R----ELKKSLDELERSLEELEK 41 (80)
T ss_dssp -----CHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHh
No 12
>2JOK_A Putative G-nucleotide exchange factor; Guanine nucleotide exchange factor, Burkholderia pseudomallei, Type III secretion, SopE, SopE2, CELL INVASION, SIGNALING PROTEIN; NMR {Burkholderia pseudomallei} SCOP: a.168.1.1
Probab=44.90 E-value=2.1e+02 Score=21.62 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred ccHHHHhcCHHHHHHHHcCCCCCCCcccCccCCCCHHH---------HHhhCCCCcCCCChH--HHHHHHHHHHHHHHHH
Q FD01849383_036 8 LPTHIAANSSLIQEAVNRGIYNPNGATNGAFLPRTAAE---------SLSTGKPLHSGNHLA--SYYDAAENVLDAATNK 76 (104)
Q Consensus 8 IP~~~~~~~~~l~~~~~~G~~din~~~Ngi~LP~~~~~---------a~~~gl~~H~G~H~~--~Y~~~V~~~L~~i~~~ 76 (104)
|+.+.++ .+=..+.+.| .. -...|||+.|...+. ......|.+...+.. .+..++++.+-.+-+.
T Consensus 66 i~~~yl~--eIG~aA~~aG-L~-g~~Kngvf~P~GaGAnpf~t~v~~~~~~k~p~~~~n~~q~~~~~~yA~q~i~~~V~~ 141 (186)
T 2JOK_A 66 VRPAFIE--ALGDAARATG-LP-GADKQGVFTPSGAGTNPLYTEIRLRADTLMGAELAARPEYRELQPYARQQAIDLVAN 141 (186)
T ss_dssp SHHHHHH--HHHHHHHHHT-CS-CEEETTEEECCSCCCCSSHHHHHHHHHHHCCSHHHHSGGGTTCSHHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHcC-CC-CcccCCccCCCCCCCCCchHHHhHHHHHHchhhhhcchhHHhhHHHHHHHHHHHHHH
Q ss_pred h-hhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 77 I-GNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 77 ~-~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
+ .+.+..++.+....+..|.+..+.
T Consensus 142 l~~e~~~~~p~~Fr~~L~~Ia~ky~~ 167 (186)
T 2JOK_A 142 ALPAERSNTLVEFRQTVQTLEATYRR 167 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChhcCCCCHHHHHHHHHHHHHHHHH
No 13
>6E4J_A Uncharacterized protein PF2048.1; UNKNOWN FUNCTION; NMR {Pyrococcus furiosus COM1}
Probab=42.49 E-value=90 Score=20.11 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHH
Q FD01849383_036 57 NHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERL 98 (104)
Q Consensus 57 ~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ 98 (104)
+|- .|-+.+++.++++..+. . +.+++.+.+++....
T Consensus 25 PYi-~n~~~ikelve~~~~es-~----s~ee~i~~Lee~i~~ 60 (80)
T 6E4J_A 25 PYV-EYYNELKALVSKISSSV-N----DLEEAIVVLREEEKK 60 (80)
T ss_dssp TTC-SSHHHHHHHHHHHHHHC-S----SHHHHHHHHHHHHHH
T ss_pred HHh-hCHHHHHHHHHHHHhhC-C----CHHHHHHHHHHHHHh
No 14
>1GZS_D SOPE; TOXIN/CELL CYCLE, COMPLEX (TOXIN-CELL CYCLE PROTEIN), SOPE, CDC42, SALMONELLA TYPHIMURIUM, GEF, TOXIN, GTP- BINDING, LIPOPROTEIN, PRENYLATION; HET: SO4; 2.3A {HOMO SAPIENS} SCOP: a.168.1.1
Probab=41.22 E-value=2.2e+02 Score=20.98 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHHHcCCCCCCCcccCccCCCCHHH---------HHhhCCCCcCCCChH--HHHHHHHHHHHHHHHHh-hhhccCC
Q FD01849383_036 17 SLIQEAVNRGIYNPNGATNGAFLPRTAAE---------SLSTGKPLHSGNHLA--SYYDAAENVLDAATNKI-GNLARAT 84 (104)
Q Consensus 17 ~~l~~~~~~G~~din~~~Ngi~LP~~~~~---------a~~~gl~~H~G~H~~--~Y~~~V~~~L~~i~~~~-~~~~~~~ 84 (104)
++=..+.+.| .. -...|||+.|...+. ......|.+.-.+.. .+..++++.+-..-+.+ .+.+..+
T Consensus 68 eiG~~A~~~G-L~-g~~Kngvf~P~GaGanpf~t~v~ss~~~k~p~~~~n~~q~~~~~~~Ae~~i~~~V~~l~~e~g~~~ 145 (165)
T 1GZS_D 68 EIGEAAKNAG-LP-GTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPT 145 (165)
T ss_dssp HHHHHHHHTT-CC-EEEETTEEEETTCSCCTTHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSSCC
T ss_pred HHHHHHHHcC-CC-CCCCCCeeCCCCCCCCCccHHHccHHHhhCHHHhcCHHhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q ss_pred HHHHHHHHHHHHHHHHH
Q FD01849383_036 85 DEQILSKIHAAERLMKH 101 (104)
Q Consensus 85 ~~~~~~~i~~l~~~ir~ 101 (104)
+.+...++..+.+....
T Consensus 146 P~~F~~~L~~Ia~ky~~ 162 (165)
T 1GZS_D 146 PQQFQLILENIANKYIQ 162 (165)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
No 15
>7P9K_B DUF262 domain-containing protein; Restriction endonuclease, Phage defence protein, DNA BINDING PROTEIN; HET: SO4, GOL; 2.12A {Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)}
Probab=40.95 E-value=30 Score=28.45 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCccccccHHHHhcCHHHHHHHHcCCCCC----------CCcccCccCCCC
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNRGIYNP----------NGATNGAFLPRT 42 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~G~~di----------n~~~Ngi~LP~~ 42 (104)
.+..|||+|++... ...+.. .| +.- |.-.|.+.|+..
T Consensus 470 ~~~ieHI~P~~~~~-~~~~~~---~~-~~~~~~~~~~~~~n~iGNl~lL~~~ 516 (587)
T 7P9K_B 470 HFHVDHIYPKGLFT-RNKLAK---VG-VPAEQLDELIEASNKLPNLQLLEGT 516 (587)
T ss_dssp CEEEEESSCGGGCC-HHHHHH---HT-CCTTSHHHHHHHHTBGGGEEEEESS
T ss_pred cCccccccchhhcc-chhHHh---cC-CCHHHHHHHHHHhhcchhHHccCCc
No 16
>PF19551.3 ; DUF6074 ; Family of unknown function (DUF6074)
Probab=38.24 E-value=1.6e+02 Score=18.36 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 63 YDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 63 ~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
..+....+..+...+ ....++++++..++..+.+.++..
T Consensus 33 ~~~w~~~~~~l~~~l-~~~G~~~~~i~~ev~~f~~aV~~e 71 (81)
T A0A0K2DBD8_9HY 33 EAKWRGLLKRHRRLR-RELGMAEEAIDADLLAFAAAVRNL 71 (81)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
No 17
>8FJG_A H12; De novo protein, Hallucination, repeat proteins, central pockets, pseudocyclic proteins; 2.13A {synthetic construct}
Probab=37.40 E-value=1.9e+02 Score=19.06 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc-CCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 61 SYYDAAENVLDAATNKIGNLAR-ATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~~~~~~-~~~~~~~~~i~~l~~~ir~~L 103 (104)
.|...+++.+..-..++ .... ++.++..+++.++.+++-.++
T Consensus 58 kyfekmeekikeefekl-kkdpsvtledfkkklkeildemleai 100 (109)
T 8FJG_A 58 KYFEKMEEKIKEEFEKL-KKDPSVTLEDFKKKLKEILDEMLEAI 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHHHHHHHH
No 18
>PF14357.10 ; DUF4404 ; Domain of unknown function (DUF4404)
Probab=37.39 E-value=1.7e+02 Score=18.40 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 66 AENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 66 V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
+.+.|.++.+.+ +...--+++.++.+..+.+.|...|
T Consensus 1 l~~~L~~L~~eL-~~~~~~d~~~r~~L~~l~~~i~~~l 37 (85)
T D2R1W8_PIRSD/5 1 LKATVAELEAEL-SQVDSLDDETRALLQSAADDISRAL 37 (85)
T ss_pred CHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHH
No 19
>PF06037.15 ; DUF922 ; Bacterial protein of unknown function (DUF922)
Probab=33.99 E-value=1.3e+02 Score=20.20 Aligned_cols=63 Identities=19% Similarity=0.067 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ccCCCC----------HHHHHhhCCCCcCCCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 37 AFLPRT----------AAESLSTGKPLHSGNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 37 i~LP~~----------~~~a~~~gl~~H~G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
+.||.. .=......+-.|-.+|. .+.......+.+....+ ... +.+.+.+.+.++.+.+...+
T Consensus 62 ~~lP~~~~~~~~~~~~~W~~~~~~l~~HE~~H~-~i~~~~a~~~~~~l~~l-~~~--~c~~l~~~~~~~~~~~~~~~ 134 (150)
T E6VQY1_PSEA9/4 62 YKYPRLAETPDNETLRWWQGHLDKLAEHEQVHG-KYALEAAHELDKALNSL-SDL--DCATVKEVVKALGDATLESL 134 (150)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHHHHHHH
No 20
>8HL4_L18P 50S ribosomal protein L18; Sulfolobus acidocaldarius ribosome small subunit, RIBOSOME; HET: GNP, UNK;{Sulfolobus acidocaldarius DSM 639}
Probab=33.48 E-value=3e+02 Score=20.15 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHcCCCCCCCcccCccCCCCHHHHHhhCCCCcCCCChHHHHHHHHH---H-HHHHHHHhhhhccCCHHHHHHHHHHHHH
Q FD01849383_036 22 AVNRGIYNPNGATNGAFLPRTAAESLSTGKPLHSGNHLASYYDAAEN---V-LDAATNKIGNLARATDEQILSKIHAAER 97 (104)
Q Consensus 22 ~~~~G~~din~~~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~V~~---~-L~~i~~~~~~~~~~~~~~~~~~i~~l~~ 97 (104)
+.+.| +++.... .+|...-. .|.|-..|...+.+ . ...-...+ -.+.++++.+.+...++-.
T Consensus 123 ~~d~G-l~i~~~~---~~p~~~ri---------~g~hi~~y~~~l~~~~~~~~~~~fs~~-~~~~~~~~~~~~~~~~~~~ 188 (193)
T 8HL4_L18P 123 AIDAG-LKVPVGD---LGKLKDRV---------NGSHISAYAQKLKNENQELYNKLFSSY-IQRGLDPVLLPQHFEEVLN 188 (193)
T ss_pred hhhcC-ccccccc---cCCchHhc---------cCccHHHHHHHHhhhCHHHHHHHHHHH-HHcCCChhhHHHHHHHHHH
Q ss_pred HHHH
Q FD01849383_036 98 LMKH 101 (104)
Q Consensus 98 ~ir~ 101 (104)
.|++
T Consensus 189 ~i~~ 192 (193)
T 8HL4_L18P 189 KIKE 192 (193)
T ss_pred HHhc
No 21
>PF18822.5 ; CdvA ; CdvA-like coiled-coil domain
Probab=32.32 E-value=2.4e+02 Score=18.69 Aligned_cols=37 Identities=5% Similarity=-0.042 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
..+...|..+..++ ..|.+++++.......+...+..
T Consensus 57 ~~l~~~L~~Le~r~-~~Gei~ee~Y~~~~~~l~~~l~~ 93 (123)
T G0EE18_PYRF1/9 57 DMVIRSKTALRLSF-LSGEIRPDAYRTAFEKLKDIEES 93 (123)
T ss_pred HHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHH
No 22
>6NZ1_C Design construct XXA_GVDQ; homotrimer, helix, DE NOVO PROTEIN; 1.9A {synthetic construct}
Probab=32.09 E-value=2.4e+02 Score=18.70 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=0.0 Template_Neff=1.600
Q ss_pred CCChH-HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 56 GNHLA-SYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 56 G~H~~-~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
|+|-+ .|-...-..|.++..++ ..+ -|.+.+.+.+.-+...++.
T Consensus 1 GSHMGTkyLk~~L~~Lke~LErL-eKN-PseD~iVe~~r~IVe~n~~ 45 (98)
T 6NZ1_C 1 GSHMGTEDLKYSLERLREILERL-EEN-PSEKQIVEAIRAIVENNAQ 45 (98)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHH-HHS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHHHHH
No 23
>PF19903.3 ; DUF6376 ; Family of unknown function (DUF6376)
Probab=31.63 E-value=2.8e+02 Score=19.20 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCHHHHHHH--------HHHHHHHHHH
Q FD01849383_036 61 SYYDAAENVLDAATNKIGNLARATDEQILSK--------IHAAERLMKH 101 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~--------i~~l~~~ir~ 101 (104)
.|++.+...++.....+ +.|.++++.+... |.++.+.|+.
T Consensus 68 ~~Ne~l~~~Id~~l~~i-~~G~~~~~~le~sei~qti~~i~~l~~qi~~ 115 (116)
T A0A2W1LIS0_9BA 68 SYNATLLAEVNTYLEQL-EKNTINLGDLQNSPMAQTLNEITGTLDQLKQ 115 (116)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCHHHHhcChHHHHHHHHHHHHHHHhc
No 24
>PF11458.12 ; Mistic ; Membrane-integrating protein Mistic
Probab=31.61 E-value=2.3e+02 Score=18.21 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 61 SYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
.|++.|.+.+++....+ + .+.+-++|..+..++-..|
T Consensus 34 ~F~~evi~~IekAk~~y-G-----~e~v~~KINtivkE~LS~l 70 (74)
T A0A176J338_9BA 34 RFTAETEKIILKAIEIY-G-----EKTIEHKINTLIKEFLSFT 70 (74)
T ss_pred CCCHHHHHHHHHHHHHH-C-----HHHHHHHHHHHHHHHHhhc
No 25
>7F6J_C PDZ domain-containing protein 8; complex, PDZD8, Rab7, GTP, coiled-coil, LIPID TRANSPORT; HET: GTP; 2.1A {Homo sapiens}
Probab=31.53 E-value=2.7e+02 Score=19.65 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 56 GNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 56 G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
+.|...|++.|.....+.-+.+ =.. +++++-+.+|+...+.++..|
T Consensus 12 ~~~~~~~~e~~~~~AKe~Gk~L-f~~-L~~~eRk~Kin~~i~kLQ~eI 57 (133)
T 7F6J_C 12 VRKEGGLDDSVFIAVKEIGRDL-YRG-LPTEERIQKLEFMLDKLQNEI 57 (133)
T ss_dssp CCCTTCBCHHHHHHHHHHHTTT-TTT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH-HcC-CCHHHHHHHHHHHHHHHHHHH
No 26
>PF11527.12 ; ARL2_Bind_BART ; The ARF-like 2 binding protein BART
Probab=30.97 E-value=2.1e+02 Score=18.45 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHH
Q FD01849383_036 58 HLASYYDAAENVLDAATNKIGNLARATDEQILSKI 92 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i 92 (104)
|. .|...|++.|+...... + ++.+++.+.+
T Consensus 47 ~~-~y~~l~e~~l~~fl~~~-g---~~~~~~~~~~ 76 (118)
T A7SHQ3_NEMVE/4 47 HK-NYKEMVDSLLSSFVKDV-G---ITEEQFAVAC 76 (118)
T ss_pred HH-HHHHHHHHHHHHHHHHh-C---CCHHHHHHHH
No 27
>6DKM_D DHD131_B; Computational Design, Heterodimer, Coiled-coil, DE NOVO PROTEIN; 2.38A {synthetic construct}
Probab=30.91 E-value=2.2e+02 Score=17.78 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHhhhhccCCHHH---HHHHHHHHHHH
Q FD01849383_036 63 YDAAENVLDAATNKIGNLARATDEQ---ILSKIHAAERL 98 (104)
Q Consensus 63 ~~~V~~~L~~i~~~~~~~~~~~~~~---~~~~i~~l~~~ 98 (104)
...+-+.|..+...+ +.|.++.++ +..+|.++.+.
T Consensus 22 yeklleelrrlyeey-krgevseeesdrilreikeildk 59 (79)
T 6DKM_D 22 YEKLLEELRRLYEEY-KRGEVSEEESDRILREIKEILDK 59 (79)
T ss_dssp HHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
No 28
>PF07820.16 ; TraC ; TraC-like protein
Probab=29.90 E-value=2.6e+02 Score=18.38 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHHHHHHhhhhc--cCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 68 NVLDAATNKIGNLA--RATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 68 ~~L~~i~~~~~~~~--~~~~~~~~~~i~~l~~~ir~~ 102 (104)
+++.++..+. ... +++++++.+.+.++...+|..
T Consensus 27 eRigrlA~KA-GL~eldIsD~eL~~aF~eia~RFr~~ 62 (84)
T Q1QEW9_NITHX/2 27 ERIGRVALKA-GLGEIEIEETMLLSAFEEVASRFRKS 62 (84)
T ss_pred HHHHHHHHHc-CCCccCCCHHHHHHHHHHHHHHHHhc
No 29
>PF11867.12 ; T1RH-like_C ; Type I restriction enzyme HindI endonuclease subunit-like, C-terminal
Probab=28.28 E-value=3.8e+02 Score=20.66 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 59 LASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 59 ~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
| .+.....++|+++.+++ ..+.++..++.+++.++.+.+..
T Consensus 198 p-~~y~~~serl~~li~~~-~~~~~~~~e~l~el~~l~~~~~~ 238 (334)
T W8RWQ4_9RHOB/6 198 V-VQNQKFSERLTNAIARY-HNRSVDALQVIQELIGMAKDLSA 238 (334)
T ss_pred h-hhhhhHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHh
No 30
>3BHP_B UPF0291 protein ynzC; NESG, SR384, O31818, UPF0291 protein ynzC, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; HET: MSE; 2.01A {Bacillus subtilis} SCOP: a.2.21.1
Probab=27.88 E-value=2.3e+02 Score=17.20 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHH-------HHHHHHHHHHHh
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSK-------IHAAERLMKHAL 103 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~-------i~~l~~~ir~~L 103 (104)
..+.++++.+...- ....+|+++..++ |..+...++..|
T Consensus 4 ~~~i~RINeLakk~-K~~~LT~eE~~Eq~~LRkeYl~~~R~~~~~~L 49 (60)
T 3BHP_B 4 NAKIARINELAAKA-KAGVITEEEKAEQQKLRQEYLKGFRSSMKNTL 49 (60)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHTTHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 31
>6XOR_A Protein swallow; coiled coil, self-association domain, RNA BINDING PROTEIN; NMR {Drosophila melanogaster}
Probab=27.72 E-value=2.7e+02 Score=17.77 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred HHHHHHHHHHHHHHHHh---hhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 61 SYYDAAENVLDAATNKI---GNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~---~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
.|++++..+|++-.... .. +-+.++.++..-.+.++.
T Consensus 28 ~yndYLQ~kLdeK~~e~~~lr~----Nfe~lR~eLs~ck~KLkr 67 (71)
T 6XOR_A 28 GFNEYVQERLDRITDDFVKMKD----NFETLRTELSEAQQKLRR 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 32
>6DMP_B Designed orthogonal protein DHD13_XAAA_B; De Novo protein, Computational design, coiled coil; NMR {synthetic construct}
Probab=27.57 E-value=2.6e+02 Score=17.70 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=0.0 Template_Neff=1.200
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
..+-.+|++|-++- . |-+++.+++.++..+||+
T Consensus 24 qelhrrle~ivr~~-g----sseea~k~~~kileeire 56 (82)
T 6DMP_B 24 QELHRRLEEIVRQS-G----SSEEAKKEAKKILEEIRE 56 (82)
T ss_dssp HHHHHHHHHHHHHH-T----TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-C----CcHHHHHHHHHHHHHHHH
No 33
>5Y2H_D Nonstructural protein 4; Antiparallel tetramer NSP4 Rotavirus Coiled-coil MF66, VIRAL PROTEIN; 2.6A {Bovine rotavirus G10} SCOP: h.1.13.1
Probab=27.16 E-value=2.3e+02 Score=16.86 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 84 TDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 84 ~~~~~~~~i~~l~~~ir~~L 103 (104)
+.+++.+.+..+..++|..|
T Consensus 2 tkdeie~qmdrivkEmrrQl 21 (51)
T 5Y2H_D 2 TKDEIEKQMDRVVKEMRRQL 21 (51)
T ss_dssp -CTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
No 34
>PF10520.13 ; Lipid_desat ; Lipid desaturase domain
Probab=26.88 E-value=65 Score=22.95 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCCccccccHHHHhcCHHHHHHHHcC
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNRG 26 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~G 26 (104)
++|.||..|..... ++++.. .|
T Consensus 33 ~f~~HH~~P~~~~~-~~~~~~---~~ 54 (178)
T E9HN67_DAPPU/1 33 PFREHHIDPTAITR-HDFIET---NG 54 (178)
T ss_pred cccccCCCchhhcc-ccHHHh---ch
No 35
>6TH6_BQ 50S ribosomal protein L18; T. kodakarensis, ac4C, Ribosome, cryo-EM; HET: ZN, 5MU, 6MZ, 5MC, 4AC, OMU, 4SU, MA6, OMC, OMG, LHH, A2M, LV2; 2.55A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
Probab=26.38 E-value=3.3e+02 Score=20.16 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred ccCccCCCCHHHHHhhCCCCcCCCChHHHHHHHHH-H---HHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 34 TNGAFLPRTAAESLSTGKPLHSGNHLASYYDAAEN-V---LDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 34 ~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~V~~-~---L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
++||.+|.+... ..+.-.=.|.|-..|...+.+ . ...-...+ -...++++.+.+...++-..|+..
T Consensus 126 d~Gl~i~~~~~~--~p~~~ri~G~hi~~y~~~l~~~~~~~~~~~fs~~-~~~~~~~~~~~~~~~~~~~~I~~~ 195 (201)
T 6TH6_BQ 126 DAGLNVPHSEEI--YPEDYRINGEHIANYAKALKEEDEALYRKQFSGY-LVKGLEPEKLPEHFEEVKAKIIEK 195 (201)
T ss_pred hcCccCCCCCCc--ChhhhhcchhhHHHHHHHchhhCHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH
No 36
>5FBM_A DNA-binding protein HU; Histone-like protein, DNA binding, Dimerization, DNA BINDING PROTEIN; 1.9A {Streptococcus mutans serotype c (strain ATCC 700610 / UA159)} SCOP: l.1.1.1, a.55.1.0
Probab=26.07 E-value=2.7e+02 Score=17.28 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 67 ENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 67 ~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
.+..+.+.++. + ++..++...+..+.+.|++.|
T Consensus 5 ~~l~~~ia~~~-~---l~~~~~~~vl~~l~~~i~~~l 37 (99)
T 5FBM_A 5 QDLIAKVAEAT-E---LTKKDSAAAVDAVFSAVSSYL 37 (99)
T ss_dssp HHHHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHHHHHHHH
No 37
>PF08838.14 ; DUF1811 ; Protein of unknown function (DUF1811)
Probab=25.77 E-value=2.2e+02 Score=19.16 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 83 ATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 83 ~~~~~~~~~i~~l~~~ir~~ 102 (104)
+|.+++..+|..|.+..+++
T Consensus 6 Mt~~EL~~Ei~~L~e~~~kA 25 (99)
T Q81I96_BACCR/5 6 MTPHELREEIGALKEQAVKA 25 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHH
No 38
>5L3R_A Signal recognition particle 54 kDa protein, chloroplastic; Co-translational protein targeting, Signal Recognition Particle, GTPase, protein transport; HET: GCP, GOL; 2.5A {Arabidopsis thaliana}
Probab=25.26 E-value=3.8e+02 Score=19.76 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 58 HLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
|...|.+.....+.+....+...+.++.+.+...+.++...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 46 (301)
T 5L3R_A 3 HHHHMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLE 46 (301)
T ss_dssp ---------------------------CTTSHHHHHHHHHHHHH
T ss_pred cchhhhhhchHHHHHHHHHhcCCCCCCHHhhhHHHHHHHHHHHH
No 39
>5J10_A peptide design 2L4HC2_24; rostta, de novo design, DE NOVO PROTEIN; 2.02A {synthetic construct}
Probab=25.26 E-value=3.2e+02 Score=17.89 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=0.0 Template_Neff=3.100
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 56 GNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 56 G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
|+|-+.-...+...+++..... . -......++..++.++++
T Consensus 1 GSHMgt~~yel~r~l~e~~~~l-~----Elk~~Leel~r~~eel~k 41 (81)
T 5J10_A 1 GSHMGTDTDELLRLAKEQAELL-K----EIKKLVEEIARLVKEIQE 41 (81)
T ss_dssp -------CCHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHhh
No 40
>1YGM_A hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein, MEMBRANE PROTEIN; NMR {Bacillus subtilis subsp. subtilis str. 168}
Probab=25.15 E-value=3.3e+02 Score=19.08 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 61 SYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
.|++.|.+.+++....+ + .+.+-++|..+..++-.-|
T Consensus 70 ~F~edVi~~IekAK~kY-G-----~e~V~~KINtIVkEmLS~L 106 (118)
T 1YGM_A 70 QLDDDTAELMKQARDMY-G-----QEKLNEKLNTIIKQILSIS 106 (118)
T ss_dssp CSCCCCCHHHHHHHHHT-S-----SSSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH-C-----HHHHHHHHHHHHHHHHhhh
No 41
>PF09677.14 ; TrbI_Ftype ; Type-F conjugative transfer system protein (TrbI_Ftype)
Probab=24.97 E-value=3.2e+02 Score=17.78 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 66 AENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 66 V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
+...++.....+ ..+.+|+++..+....+...+.+.|
T Consensus 31 ~~~lv~~~~~~l-~~~~ls~~e~~~~~~~f~~~l~~~i 67 (103)
T Q2G6C0_NOVAD/2 31 LSRILGDFIEAE-ARAGRPPEETRLRVQAYLKAVEASV 67 (103)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
No 42
>PF13108.10 ; DUF3969 ; Protein of unknown function (DUF3969)
Probab=24.58 E-value=3.1e+02 Score=18.11 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHcCCCCCCCcccCccCCCCHHHHHhhCCCCcCCCChHHHHHHHHH--HHHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Q FD01849383_036 22 AVNRGIYNPNGATNGAFLPRTAAESLSTGKPLHSGNHLASYYDAAEN--VLDAATNKIGNLARATDEQILSKIHAAERLM 99 (104)
Q Consensus 22 ~~~~G~~din~~~Ngi~LP~~~~~a~~~gl~~H~G~H~~~Y~~~V~~--~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~i 99 (104)
+.+.|.+.++.+...++-|.....-... |-.+ ...+.|.. .|+++.+-. ++++.+.|.++.+..
T Consensus 19 al~~g~i~ideae~~Lf~P~~~~~L~~~------~~~~-el~~ii~~g~ELEDi~~L~-------p~~l~~~i~~l~~~~ 84 (102)
T M1M8I9_9CLOT/1 19 SLSVDAISIEECEMYLFSPYSVEKLNTL------NLDE-QIVELVENGYELEDVESLI-------PEELYKSIDKIRLKA 84 (102)
T ss_pred HHHcCCCCHHHHHHHHhCHHHHHHHHHC------CCCH-HHHHHHHhccchHhHHHHC-------cHHHHHHHHHHHHHH
Q ss_pred HHHhC
Q FD01849383_036 100 KHALN 104 (104)
Q Consensus 100 r~~L~ 104 (104)
...|.
T Consensus 85 ~~~L~ 89 (102)
T M1M8I9_9CLOT/1 85 IELLK 89 (102)
T ss_pred HHHHH
No 43
>7CIK_B Flagellar M-ring protein; Flagellar motor protein, MOTOR PROTEIN; 2.29A {Aquifex aeolicus (strain VF5)}
Probab=24.56 E-value=48 Score=23.65 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCccccccHHHHhc-CHHHHHHHHcC-CCCCCCcccCccCC
Q FD01849383_036 1 GYAAHHLLPTHIAAN-SSLIQEAVNRG-IYNPNGATNGAFLP 40 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~-~~~l~~~~~~G-~~din~~~Ngi~LP 40 (104)
.+..||+.+.-...+ ..+...|.+.| .|.+......|..|
T Consensus 6 ~~~~~~~~~~l~~~~~~~i~~~L~~~gI~~~~~~~g~~I~V~ 47 (173)
T 7CIK_B 6 HHHHHHIEGRHMPDDLNAVVTELDKEGVKYKISPDGRTIYVP 47 (173)
T ss_dssp ------------CTTGGGTHHHHHHHTCCCEECSSSSCEEEE
T ss_pred ccchhcccCCCCHHHHHHHHHHHHHcCCCEEEcCCCCEEEEe
No 44
>5J0J_C designed protein 2L6HC3_6; rosetta, de novo design, DE NOVO PROTEIN; 2.256A {synthetic construct}
Probab=24.41 E-value=3.3e+02 Score=17.73 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=0.0 Template_Neff=2.800
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 56 GNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 56 G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
|+|- .-.+++...|+++++.+ . -......++.....++.+
T Consensus 1 GSHM-GT~dei~~~l~eler~L-~----Elrk~~eel~e~Leelek 40 (79)
T 5J0J_C 1 GSHM-GTKYKIKETLKRLEDSL-R----ELRRILEELKEMLERLEK 40 (79)
T ss_dssp ------CHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHH
T ss_pred CCcc-chHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHhh
No 45
>8AU1_L Putative tail sheath protein; Jumbo Phage, Klebsiella pneumoniae, tail, sheath, structural protein;{Klebsiella phage vB_KpM_FBKp24}
Probab=24.09 E-value=2.6e+02 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHHHHHHh-hhhccCCHHHHHHHHHH-HHHHHHHHh
Q FD01849383_036 65 AAENVLDAATNKI-GNLARATDEQILSKIHA-AERLMKHAL 103 (104)
Q Consensus 65 ~V~~~L~~i~~~~-~~~~~~~~~~~~~~i~~-l~~~ir~~L 103 (104)
.|++.++++|+.+ |+.. ++.+++.+.+++ +.+.+|.++
T Consensus 597 ~l~Ki~~~~w~~~sG~~~-~T~~q~~~~~~~~i~~~~~~rf 636 (689)
T 8AU1_L 597 NLNRFAFEAWRDLTGTQK-LTDDQLIERSDDAVSTRGTGAF 636 (689)
T ss_dssp HHHHHHHHHHHHHSSCSS-CCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHhccCC
No 46
>PF04316.17 ; FlgM ; Anti-sigma-28 factor, FlgM
Probab=23.63 E-value=2.4e+02 Score=15.88 Aligned_cols=25 Identities=4% Similarity=0.073 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHhhhhc--cCCHHHHHHHH
Q FD01849383_036 67 ENVLDAATNKIGNLA--RATDEQILSKI 92 (104)
Q Consensus 67 ~~~L~~i~~~~~~~~--~~~~~~~~~~i 92 (104)
.+++..+..++ ..| .++.+++.++|
T Consensus 26 ~~kV~~ik~~I-~~G~Y~vd~~~iA~~m 52 (54)
T S0EZD9_CHTCT/4 26 MDRVMQLKALV-ESGQYHVSGEDVADLM 52 (54)
T ss_pred HHHHHHHHHHH-HcCCCCCCHHHHHHHH
No 47
>2YXY_A Hypothetical conserved protein, GK0453; GK0453, alpha and beta proteins (a+b) class, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NPPSFA, National Project on Protein; 2.2A {Geobacillus kaustophilus}
Probab=23.20 E-value=2.6e+02 Score=19.44 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 83 ATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 83 ~~~~~~~~~i~~l~~~ir~~ 102 (104)
+|.+++..+|..|.+..+++
T Consensus 14 Mt~~EL~~Ei~~L~e~~~kA 33 (115)
T 2YXY_A 14 MTKEELQQEIAMLTEKARKA 33 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
No 48
>1SF9_A yfhH hypothetical protein; Structural Genomics, unknown function, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; 1.71A {Bacillus subtilis} SCOP: b.34.15.1, l.1.1.1
Probab=23.19 E-value=4.4e+02 Score=18.78 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 65 AAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 65 ~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
++.....+..+++ |.+++..+|..|.++.+++
T Consensus 20 ~~~~~m~krySqM------t~~EL~~EI~~Lke~~~kA 51 (128)
T 1SF9_A 20 FQSNAMEKRYSQM------TPHELNTEIALLSEKARKA 51 (128)
T ss_dssp HHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhcC------CHHHHHHHHHHHHHHHHHH
No 49
>PF02609.20 ; Exonuc_VII_S ; Exonuclease VII small subunit
Probab=23.10 E-value=2.5e+02 Score=15.87 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHhhhhccCCHHHHHHHHH---HHHHHHHHHh
Q FD01849383_036 68 NVLDAATNKIGNLARATDEQILSKIH---AAERLMKHAL 103 (104)
Q Consensus 68 ~~L~~i~~~~~~~~~~~~~~~~~~i~---~l~~~ir~~L 103 (104)
..|+.+.+++ ..++++.+++..... .+....+..|
T Consensus 6 ~~Le~iv~~L-e~~~~~lde~~~~~e~a~~l~~~c~~~L 43 (52)
T D3E6M4_GEOS4/1 6 AQLETIVEQL-EDGDVPLEKAIDLFQQGMKLSQMCSKKL 43 (52)
T ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHH
No 50
>5UDO_D A118 serine integrase; site-specific recombination, coiled-coil, RECOMBINATION; 2.541A {Listeria innocua}
Probab=22.70 E-value=5e+02 Score=19.18 Aligned_cols=37 Identities=3% Similarity=-0.115 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHH
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKH 101 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~ 101 (104)
..++.+++.+.+.+ ..+.++.+++.+.+..+...+..
T Consensus 224 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 260 (328)
T 5UDO_D 224 KIEHAKKKRLFDLY-INGSYEVSELDSMMNDIDAQINY 260 (328)
T ss_dssp HHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHH
No 51
>PF00216.25 ; Bac_DNA_binding ; Bacterial DNA-binding protein
Probab=22.53 E-value=2.8e+02 Score=16.28 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhC
Q FD01849383_036 67 ENVLDAATNKIGNLARATDEQILSKIHAAERLMKHALN 104 (104)
Q Consensus 67 ~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L~ 104 (104)
.+.++.+.++. + ++..++...+..+.+.+.+.|.
T Consensus 4 ~~l~~~ia~~~-~---~~~~~~~~~l~~~~~~i~~~l~ 37 (90)
T A0L640_MAGMM/1 4 GELKKIVADKT-G---MSQADAGRAVAATLEAISESLG 37 (90)
T ss_pred HHHHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHHh
No 52
>7XVM_V Histone H5; linker histone, nucleosome binding, chromatin structure, chromatin compaction, histone variants, STRUCTURAL PROTEIN-DNA complex, DNA BINDING PROTEIN; HET: CA; 2.84A {Homo sapiens}
Probab=22.50 E-value=2.8e+02 Score=20.34 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHH
Q FD01849383_036 55 SGNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHA 94 (104)
Q Consensus 55 ~G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~ 94 (104)
...|+ .|.++|.+.+..+.+.- + .+...|...|..
T Consensus 23 ~~shP-~~~~mI~~AI~~l~er~-G---sS~~aIkk~i~~ 57 (190)
T 7XVM_V 23 SASHP-TYSEMIAAAIRAEKSRG-G---SSRQSIQKYIKS 57 (190)
T ss_dssp CCCCC-CHHHHHHHHHHHSCCSS-C---EEHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHHHHHhhcCC-C---CCHHHHHHHHHH
No 53
>4QS8_A Hexokinase-1; Hexokinase, ATP-dependent, sugar sensor, TRANSFERASE; 1.798A {Arabidopsis thaliana}
Probab=22.16 E-value=5.6e+02 Score=20.74 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 54 HSGNHLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 54 H~G~H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
|.--|. .|...+.+.+.++.+.+ . +|+..+..-+..+..++...+
T Consensus 4 ~~~~~~-~~~~~~~~~~~~l~~~~-~---ls~~t~~~i~~~l~~~~~~~~ 48 (474)
T 4QS8_A 4 HHHHSS-GKWGRVLAILKAFEEDC-A---TPISKLRQVADAMTVEMHAGL 48 (474)
T ss_dssp -------CCHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccc-cchhHHHHHHHHHHHhc-C---CCHHHHHHHHHHHHHHHHHHH
No 54
>6S7O_E Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; N-glycosylation, Oligosaccharyltransferase, OSTA, TRANSFERASE; HET: NAG, KZE, MAN, EGY, BMA, KZB; 3.5A {Homo sapiens}
Probab=22.02 E-value=5.6e+02 Score=22.14 Aligned_cols=38 Identities=0% Similarity=-0.046 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 64 DAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 64 ~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
..+...|.++..++ ..|+++.++..+.+.+.++++++.
T Consensus 559 ~~~~~~l~~~~~~y-~~gkisr~~y~kl~~~~~k~i~k~ 596 (607)
T 6S7O_E 559 KELVLKSAVEAERL-VAGKLKKDTYIENEKLISGKRQEL 596 (607)
T ss_dssp HHHHHHTTSSSCCS-HHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
No 55
>PF05332.15 ; Vesi_VP2 ; Vesivirus VP2 protein
Probab=21.94 E-value=1.6e+02 Score=20.15 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred HHHHHHcCCCCCCCcccC
Q FD01849383_036 19 IQEAVNRGIYNPNGATNG 36 (104)
Q Consensus 19 l~~~~~~G~~din~~~Ng 36 (104)
.+.|+..| |++|--+||
T Consensus 67 ~qsa~~AG-F~~~~ySng 83 (105)
T VP2_FCVUR/2-10 67 VRLARAAG-FRVDPYSYT 83 (105)
T ss_pred HHHHHHCC-CCCCCCccc
No 56
>3FXD_A Protein IcmQ; 4 helix bundle, helix-turn-helix, UNKNOWN FUNCTION; 2.1A {Legionella pneumophila}
Probab=21.71 E-value=3.1e+02 Score=16.51 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 62 YYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 62 Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
|.......|..+...+ ..|.|...-..+-+.+=...||..+
T Consensus 6 ~~e~~~~il~aLD~~i-~~GpWe~S~FLr~i~K~L~~ird~~ 46 (57)
T 3FXD_A 6 SDEQKETILKALNDAI-EKGPWDKSNFLRVIGKKLIAIRDRF 46 (57)
T ss_dssp CHHHHHHHHHHHHHHH-HHSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HHCCccccHHHHHHHHHHHHHHHHH
No 57
>PF15652.10 ; Tox-SHH ; HNH/Endo VII superfamily toxin with a SHH signature
Probab=21.29 E-value=1.8e+02 Score=17.53 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CCCccccccHHHHhcCHHHHHHHHc--CCCCCCCcccCccCCC
Q FD01849383_036 1 GYAAHHLLPTHIAANSSLIQEAVNR--GIYNPNGATNGAFLPR 41 (104)
Q Consensus 1 ~~qaHHiIP~~~~~~~~~l~~~~~~--G~~din~~~Ngi~LP~ 41 (104)
.++.||+|.....+ ..+.. . | |+.+.+- .|.|+.
T Consensus 3 ~~~~hh~~q~~~~~--~~~~~---~~~~-y~~~~~p-~i~l~~ 38 (97)
T B8I5J4_RUMCH/1 3 LVQAHHPIQDEWAK--QWAAA---NGIP-YNSGQAP-TILLES 38 (97)
T ss_pred cccccHHHHHHHHH--HHHHh---cCCC-CCCCCCC-eEEccc
No 58
>4ZI3_C Cilia- and flagella-associated protein 36; Arf-like GTPase, GTP-binding, BART-like domain, cilia, hydrolase; HET: GNP; 2.0A {Mus musculus}
Probab=21.10 E-value=3.8e+02 Score=17.89 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHH
Q FD01849383_036 58 HLASYYDAAENVLDAATNKIGNLARATDEQILSKIH 93 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~ 93 (104)
|. .|...|+..|+...... + ++.+++.+.+.
T Consensus 56 ~~-~y~~lve~~le~~l~~~-g---~s~e~f~~~~~ 86 (135)
T 4ZI3_C 56 HQ-EYKELVEKLLESYLKEI-G---INEDQFQEACT 86 (135)
T ss_dssp HH-HHHHHHHHHHHHHHHHH-T---CCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHc-C---CCHHHHHHHHh
No 59
>7VKV_X zeta-subunit; soluble protein, 4 alpha-helix, F1FO-ATPase binding subunit, PROTEIN BINDING; NMR {Sinorhizobium meliloti 1021}
Probab=20.45 E-value=4.2e+02 Score=17.43 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHHhhhhc--cCCHHHHHHHHHHHHHHHHHHhC
Q FD01849383_036 67 ENVLDAATNKIGNLA--RATDEQILSKIHAAERLMKHALN 104 (104)
Q Consensus 67 ~~~L~~i~~~~~~~~--~~~~~~~~~~i~~l~~~ir~~L~ 104 (104)
...+.++..++ ... .++.+++..++..+....+..+.
T Consensus 64 ~~v~~kl~~Dl-~~~g~~~s~~~i~~~l~~~~~~A~~~~~ 102 (104)
T 7VKV_X 64 EDVVRKIKTDF-DAAGVAISEDDIRVRMIELLSEAVAQLQ 102 (104)
T ss_dssp SHHHHHHHHHH-HHTTCSCCHHHHHHHHHHHHHHHTTTTC
T ss_pred hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHHHHh
No 60
>2K0S_A ADP-ribosylation factor-like protein 2-binding protein; protein, Cytoplasm, Mitochondrion, Structural Genomics, PSI-2, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG, STRUCTURAL; NMR {Danio rerio}
Probab=20.44 E-value=4.3e+02 Score=17.59 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 58 HLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
|. .|...|++.|+...... -.| ++.+++.+.+....+.....+
T Consensus 60 ~~-~y~~lve~~Le~~l~~~-~~g-~s~~~f~~~l~~~~~~~~~~~ 102 (130)
T 2K0S_A 60 FN-EYIEILEKHLEQQLVER-IPG-FNMDAFTHSLKQHKDEVSGDI 102 (130)
T ss_dssp HH-HHHHHHHHHHHHHHHTT-CCS-SSCCTHHHHHSSCGGGSSHHH
T ss_pred HH-HHHHHHHHHHHHHHHHh-CCC-CCHHHHHHHHHHcCChhhHHH
No 61
>7OQ4_Z RNAP inhibitory protein; viral inhibitor, transcription inhibition, ATV, archaeal virus, Archaea, VIRAL PROTEIN;{Sulfolobus acidocaldarius DSM 639}
Probab=20.39 E-value=4.9e+02 Score=18.87 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=0.0 Template_Neff=2.100
Q ss_pred ChHHHHHHHHHHHHHHHHHh-----------hhhccCC--HHHHHHHHHHHHHHHHHHhC
Q FD01849383_036 58 HLASYYDAAENVLDAATNKI-----------GNLARAT--DEQILSKIHAAERLMKHALN 104 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~-----------~~~~~~~--~~~~~~~i~~l~~~ir~~L~ 104 (104)
|+..|...|.+.|..+.+-. |.....+ ..++++.|.++...||+..+
T Consensus 6 HpekYaggal~iL~~F~~GkIgYPEVtLKLAGeEAn~dg~~p~lKeiIH~iVktIR~A~k 65 (149)
T 7OQ4_Z 6 HPQKYETHVLDDLMEFYEGVIGYPEIDLRLAGEEAWLKGVNPELAEAVKKIIKTIRRYLE 65 (149)
T ss_dssp ----CHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSS
T ss_pred ChhHHHHHHHHHHHHHHcCCCCCCeeeeEecHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
No 62
>5CW4_B Protein FAM175B; Metal dependent enzyme, METAL BINDING PROTEIN; HET: MSE, GOL; 2.543A {Camponotus floridanus}
Probab=20.30 E-value=4.8e+02 Score=20.53 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Q FD01849383_036 61 SYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHA 102 (104)
Q Consensus 61 ~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~ 102 (104)
.+...+.+.|+.+.+++ ...+-...++.++|..|...++..
T Consensus 227 ~~~~~l~~~L~~l~~~v-~~sE~~l~~L~~ev~~L~~~l~~~ 267 (289)
T 5CW4_B 227 LIQKAAEHHLMSLIPKV-CESDLEVAELEKQVHELKIKIATQ 267 (289)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 63
>6DM9_C DHD15_extended_A; Computational design, heterodimer, coiled-coil, DE NOVO PROTEIN; HET: FME; 2.25A {synthetic construct}
Probab=20.08 E-value=3.9e+02 Score=16.96 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Q FD01849383_036 58 HLASYYDAAENVLDAATNKIGNLARATDEQILSKIHAAERLMKHAL 103 (104)
Q Consensus 58 H~~~Y~~~V~~~L~~i~~~~~~~~~~~~~~~~~~i~~l~~~ir~~L 103 (104)
|. ..-+.+.+.+.++..-+ ....=.++.+.+.|.++...+|+-|
T Consensus 17 hi-~im~E~~Eim~r~~~LL-~KARGADE~V~~~ir~ii~RirEii 60 (78)
T 6DM9_C 17 HI-EIMREILELLQKMEELL-EKARGADEDVAKTIKELLRRLKEII 60 (78)
T ss_dssp HH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
No 64
>4UA8_A Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-); solute-binding protein maltotriose ABC, TRANSPORT PROTEIN; HET: PEG, EDO, GLC; 1.54A {Eubacterium rectale DSM 17629}
Probab=20.03 E-value=3.3e+02 Score=20.53 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHHHHHHhhhh---ccCCHHHHHHHHHHHHHHHHHHhC
Q FD01849383_036 66 AENVLDAATNKIGNL---ARATDEQILSKIHAAERLMKHALN 104 (104)
Q Consensus 66 V~~~L~~i~~~~~~~---~~~~~~~~~~~i~~l~~~ir~~L~ 104 (104)
+...+..+...+ -. ++++.+++.+.+++..+++.+.|+
T Consensus 360 ~~~~~~~~~~~~-~~~~~g~~t~e~~~~~l~~~~~~~~~~l~ 400 (400)
T 4UA8_A 360 YWDAATPFGDAF-QNGAEGQITKDNAAQKTEDFNTQLNDSLK 400 (400)
T ss_dssp HHHHHHHHHHTT-STTCTTCCCTTTHHHHHHHHHHHHHHTTC
T ss_pred hhhcchhHhHHH-hhccCCccChhhHHHHHHHHHHHHHHhcC