Query FD01872972_02767 type IV secretion protein Rhs
Match_columns 65
No_of_seqs 25 out of 27
Neff 3.46104
Searched_HMMs 86581
Date Mon Feb 26 21:14:57 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4141837.hhr -oa3m ../results/4141837.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14412.10 ; AHH ; A nuclease 98.1 1.2E-05 1.4E-10 51.3 5.1 61 1-63 19-104 (139)
2 PF15635.10 ; Tox-GHH2 ; GHH si 84.5 0.74 8.5E-06 29.0 0.5 11 2-12 4-14 (105)
3 PF09533.14 ; DUF2380 ; Predict 56.7 16 0.00018 27.1 1.8 15 1-15 102-118 (189)
4 PF02981.19 ; FokI_D1 ; FokI, r 53.2 16 0.00018 26.9 1.4 39 22-64 4-42 (154)
5 PF14022.10 ; DUF4238 ; Protein 51.8 18 0.00021 24.5 1.4 13 1-13 1-13 (282)
6 2RQP_A Heterochromatin protein 50.2 27 0.00031 19.3 1.8 20 46-65 7-26 (88)
7 PF00538.23 ; Linker_histone ; 46.9 37 0.00042 17.4 1.8 18 48-65 1-18 (73)
8 1UHM_A Histone H1; winged heli 46.8 32 0.00037 18.3 1.6 18 48-65 4-21 (78)
9 2LSO_A Histone H1x; Structural 44.0 41 0.00048 18.3 1.8 19 47-65 4-22 (83)
10 8E4V_A Isoform 3 of Histone ac 43.0 39 0.00045 18.7 1.6 21 45-65 3-23 (84)
11 1UST_A HISTONE H1; DNA BINDING 41.4 38 0.00044 19.5 1.5 19 47-65 6-24 (93)
12 1USS_A HISTONE H1; DNA BINDING 38.3 44 0.00051 18.9 1.4 18 48-65 7-24 (88)
13 PF05766.16 ; NinG ; Bacterioph 34.8 18 0.0002 24.7 -0.7 47 2-61 112-158 (197)
14 4ZQA_A Sin3 histone deacetylas 33.3 60 0.00069 19.5 1.5 12 46-57 4-15 (86)
15 7C0J_B Histone H5,Double-stran 32.8 69 0.00079 17.1 1.6 18 48-65 7-24 (76)
16 7XVM_V Histone H5; linker hist 30.0 81 0.00094 22.6 2.0 19 47-65 25-43 (190)
17 1HST_A HISTONE H5; CHROMOSOMAL 26.1 89 0.001 17.5 1.3 18 48-65 7-24 (90)
18 PF21217.1 ; PaaA2 ; Stability 26.0 1.7E+02 0.002 15.0 2.4 16 50-65 5-20 (33)
19 3LYH_B Cobalamin (Vitamin B12) 26.0 2E+02 0.0023 17.0 2.8 20 46-65 104-123 (126)
20 1GHC_A GH1; CHROMOSOMAL PROTEI 25.5 1E+02 0.0012 15.8 1.4 18 48-65 3-20 (75)
21 8A22_Ub mL105; mitoribosome, r 24.5 1.4E+02 0.0017 21.9 2.4 48 11-58 2-54 (131)
22 PF12108.12 ; SF3a60_bindingd ; 23.7 94 0.0011 15.3 1.0 15 9-23 7-21 (27)
23 PF14426.10 ; Imm2 ; Immunity p 22.7 2.4E+02 0.0027 17.2 2.8 20 46-65 12-32 (60)
24 2OV6_A V-type ATP synthase sub 22.2 2.4E+02 0.0027 17.5 2.8 47 4-59 49-95 (101)
25 PF18476.5 ; PIN_8 ; PIN like d 21.7 2.7E+02 0.0031 19.2 3.2 59 4-64 37-112 (221)
26 4U00_A Amino acid ABC transpor 21.7 2.9E+02 0.0034 17.9 3.2 26 40-65 162-187 (244)
27 2XJ4_A MIPZ; REPLICATION, CELL 21.6 3.2E+02 0.0037 19.0 3.5 36 7-48 251-286 (286)
28 7COW_T Histone H1.0; Nucleosom 21.5 1.3E+02 0.0015 21.4 1.7 19 47-65 25-43 (195)
No 1
>PF14412.10 ; AHH ; A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=98.13 E-value=1.2e-05 Score=51.28 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=37.8 Template_Neff=9.200
Q ss_pred CCCcccHHHHHHHHHHHhh----------cccchhcccccccCCcccccCCC----------CCC-CCChHHHHHH----
Q FD01872972_027 1 LHHIIPQEVWKTFKTDLKK----------VTGYVQNVTKKAMDVTNLIDLDK----------PFH-GNHPAYSAYV---- 55 (65)
Q Consensus 1 ~HHiIP~av~k~~~~~lk~----------i~gy~q~~~~~~~~~~NL~~L~~----------pFH-GNHP~Yn~yV---- 55 (65)
.|||||..++..-...... ..+.++......+ .|.+.||. +.| |+|+.|+.+|
T Consensus 19 ~HHiip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~N~i~LP~~~~~~~~~~~~~H~g~H~~Y~~~v~~~~ 96 (139)
T Q2SED4_HAHCH/1 19 VHHIVNISSVRNGIEEIAKDLPDLRVLIVNGLLDEKYNINYK--DNSLILPTQRSASAKTGLPSHYGSHPSYSKDILQHV 96 (139)
T ss_pred ceeeecHHHHHhchhhhhcCCchHhHHHHcchHHHhcCCCCC--CCeeecCCchHHHhhhCCCcccCCChHHHHHHHHHH
Confidence 4999999977655432110 0000111113343 88888873 566 9999999999
Q ss_pred HHHHHHHH
Q FD01872972_027 56 KDKISELI 63 (65)
Q Consensus 56 ~~~i~~L~ 63 (65)
.+++.++.
T Consensus 97 ~~~l~~~~ 104 (139)
T Q2SED4_HAHCH/1 97 KQALQPYK 104 (139)
T ss_pred HHHHHHHH
Confidence 87777653
No 2
>PF15635.10 ; Tox-GHH2 ; GHH signature containing HNH/Endo VII superfamily nuclease toxin 2
Probab=84.47 E-value=0.74 Score=29.01 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCcccHHHHHH
Q FD01872972_027 2 HHIIPQEVWKT 12 (65)
Q Consensus 2 HHiIP~av~k~ 12 (65)
|||||.+.|++
T Consensus 4 hHivpd~~fr~ 14 (105)
T G4T2Y2_META2/2 4 DHLIDVKSFVE 14 (105)
T ss_pred CceeeHHHhcc
No 3
>PF09533.14 ; DUF2380 ; Predicted lipoprotein of unknown function (DUF2380)
Probab=56.67 E-value=16 Score=27.15 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCCcccHH--HHHHHHH
Q FD01872972_027 1 LHHIIPQE--VWKTFKT 15 (65)
Q Consensus 1 ~HHiIP~a--v~k~~~~ 15 (65)
+|||+||+ .-+.|.+
T Consensus 102 ~HHifPQ~~~~~~~F~~ 118 (189)
T E3FZI5_STIAD/5 102 KHHLFPQEARLATWFRA 118 (189)
T ss_pred cccccchHHHHHHHHHH
No 4
>PF02981.19 ; FokI_D1 ; FokI, recognition domain, subdomain 1
Probab=53.17 E-value=16 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred cchhcccccccCCcccccCCCCCCCCChHHHHHHHHHHHHHHh
Q FD01872972_027 22 GYVQNVTKKAMDVTNLIDLDKPFHGNHPAYSAYVKDKISELIK 64 (65)
Q Consensus 22 gy~q~~~~~~~~~~NL~~L~~pFHGNHP~Yn~yV~~~i~~L~~ 64 (65)
|+|||++ +-.+|++...-|=-|-..|.......|..++.
T Consensus 4 GWvQnps----~f~~Lk~vV~iF~~~S~~~~~L~~~~i~~li~ 42 (154)
T R6AWC6_9BACT/4 4 GWIQNPS----STDTLRNILGIFVPGSDFHTFMVSERLPLLAS 42 (154)
T ss_pred cccCCCC----ChHHHHhHHheeCCCCHHHHHHHHcchhHHhh
No 5
>PF14022.10 ; DUF4238 ; Protein of unknown function (DUF4238)
Probab=51.77 E-value=18 Score=24.51 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCCcccHHHHHHH
Q FD01872972_027 1 LHHIIPQEVWKTF 13 (65)
Q Consensus 1 ~HHiIP~av~k~~ 13 (65)
+||.||+...+.|
T Consensus 1 ~qHyvPq~yLk~F 13 (282)
T A3XIU8_LEEBM/8 1 KQHYIPRSYLKNF 13 (282)
T ss_pred CCCccCHHHHHhh
No 6
>2RQP_A Heterochromatin protein 1-binding protein 3; heterochromatin protein 1 binding protein, histone H1, heterochromatin protein 1, Alternative splicing, Chromosomal protein, DNA-binding, Nucleus; NMR {Homo sapiens} SCOP: a.4.5.0, l.1.1.1
Probab=50.25 E-value=27 Score=19.34 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCChHHHHHHHHHHHHHHhC
Q FD01872972_027 46 GNHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 46 GNHP~Yn~yV~~~i~~L~~~ 65 (65)
..||.|..+|.+.+.++.+.
T Consensus 7 ~~~p~~~~~i~~ai~~~~~~ 26 (88)
T 2RQP_A 7 SPRPKMDAILTEAIKACFQK 26 (88)
T ss_dssp CCCCCHHHHHHHCCCCCHHH
T ss_pred CCCCCHHHHHHHHHHHccCC
No 7
>PF00538.23 ; Linker_histone ; linker histone H1 and H5 family
Probab=46.90 E-value=37 Score=17.43 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
||.|...|.+.+..+.+.
T Consensus 1 ~p~~~~~v~~~~~~~~~~ 18 (73)
T B3RQA0_TRIAD/2 1 HPKYIEMISAAIRALNER 18 (73)
T ss_pred CCcHHHHHHHHHHHhccC
No 8
>1UHM_A Histone H1; winged helix-turn-helix, linker histone, S. cerevisiae, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, STRUCTURAL PROTEIN; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=46.82 E-value=32 Score=18.35 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
||.|...|.+.+..+.+.
T Consensus 4 ~p~~~~~i~~ai~~~~~~ 21 (78)
T 1UHM_A 4 SKSYRELIIEGLTALKER 21 (78)
T ss_dssp CCCHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHhccC
No 9
>2LSO_A Histone H1x; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, NUCLEAR PROTEIN; NMR {Homo sapiens} SCOP: a.4.5.0, l.1.1.1
Probab=44.00 E-value=41 Score=18.31 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CChHHHHHHHHHHHHHHhC
Q FD01872972_027 47 NHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 47 NHP~Yn~yV~~~i~~L~~~ 65 (65)
.||.|...|.+.+..+.+.
T Consensus 4 ~~p~~~~~i~~ai~~~~~~ 22 (83)
T 2LSO_A 4 QPGKYSQLVVETIRRLGER 22 (83)
T ss_dssp CSCHHHHHHHHHHHHHCCS
T ss_pred CCCcHHHHHHHHHHHhCcC
No 10
>8E4V_A Isoform 3 of Histone acetyltransferase KAT6B; MORF, winged helix, DNA, histone, chromatin, TRANSCRIPTION; NMR {Homo sapiens}
Probab=43.00 E-value=39 Score=18.71 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCChHHHHHHHHHHHHHHhC
Q FD01872972_027 45 HGNHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 45 HGNHP~Yn~yV~~~i~~L~~~ 65 (65)
.+.||.|..+|.+.+..+.+.
T Consensus 3 ~~~~~~~~~~v~~a~~~~~~~ 23 (84)
T 8E4V_A 3 DLRNVDWNKLLRRAIEGLEEP 23 (84)
T ss_pred CCCCCCHHHHHHHHHHhcCCC
No 11
>1UST_A HISTONE H1; DNA BINDING PROTEIN, LINKER HISTONE, DNA BINDING DOMAIN, WINGED HELIX FOLD; NMR {SACCHAROMYCES CEREVISIAE} SCOP: a.4.5.13
Probab=41.38 E-value=38 Score=19.52 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CChHHHHHHHHHHHHHHhC
Q FD01872972_027 47 NHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 47 NHP~Yn~yV~~~i~~L~~~ 65 (65)
.||.|..+|.+.|..+.+.
T Consensus 6 ~~p~~~~~i~~ai~~~~~~ 24 (93)
T 1UST_A 6 SSKSYRELIIEGLTALKER 24 (93)
T ss_dssp CCCCHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHccCC
No 12
>1USS_A HISTONE H1; DNA BINDING PROTEIN, LINKER HISTONE, DNA BINDING DOMAIN; NMR {SACCHAROMYCES CEREVISIAE} SCOP: a.4.5.13
Probab=38.31 E-value=44 Score=18.90 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
||.|...|.+.+..+.+.
T Consensus 7 ~p~~~~mi~~ai~~~~~~ 24 (88)
T 1USS_A 7 SLTYKEMILKSMPQLNDG 24 (88)
T ss_dssp SCCHHHHHHHHHHHSCCT
T ss_pred CCCHHHHHHHHHHHcCCC
No 13
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=34.77 E-value=18 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCcccHHHHHHHHHHHhhcccchhcccccccCCcccccCCCCCCCCChHHHHHHHHHHHH
Q FD01872972_027 2 HHIIPQEVWKTFKTDLKKVTGYVQNVTKKAMDVTNLIDLDKPFHGNHPAYSAYVKDKISE 61 (65)
Q Consensus 2 HHiIP~av~k~~~~~lk~i~gy~q~~~~~~~~~~NL~~L~~pFHGNHP~Yn~yV~~~i~~ 61 (65)
|||+|...+....-++..+ ..+-..-|. .+||+.+.|..++.+.+.+
T Consensus 112 ~Hi~~~~~~~~~~~~~~N~--------~~lC~~Ch~-----~~~~~~~~~~~~l~~~~g~ 158 (197)
T A0A2U2GVX8_YER 112 GHYLTVGANPELRFNEDNC--------HRQCAPCNN-----HLSGNIEKYTPNLIAKIGQ 158 (197)
T ss_pred ccccCcCCChhhcCChhhc--------HHhCHHHHh-----hccCCHHhhHHHHHHHHCH
No 14
>4ZQA_A Sin3 histone deacetylase corepressor complex component SDS3; transcription repression, histone deacetylase complex, coiled-coil, corepressor complex, TRANSCRIPTION REPRESSOR; 1.65A {Mus musculus}
Probab=33.34 E-value=60 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCChHHHHHHHH
Q FD01872972_027 46 GNHPAYSAYVKD 57 (65)
Q Consensus 46 GNHP~Yn~yV~~ 57 (65)
|.||.|-..+.+
T Consensus 4 gthpe~~~~~~~ 15 (86)
T 4ZQA_A 4 GTLQEYQKRMKK 15 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
No 15
>7C0J_B Histone H5,Double-stranded RNA-specific adenosine deaminase; GH5, Protein-DNA complex, protein engineering, Z-DNA binding protein, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 2.75A {Gallus gallus}
Probab=32.81 E-value=69 Score=17.10 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
||.|...+.+.+..+.+.
T Consensus 7 ~~~~~~~i~~~~~~~~~~ 24 (76)
T 7C0J_B 7 HPTYSEMIAAAIRAEGEG 24 (76)
T ss_dssp -CCHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHhCCC
No 16
>7XVM_V Histone H5; linker histone, nucleosome binding, chromatin structure, chromatin compaction, histone variants, STRUCTURAL PROTEIN-DNA complex, DNA BINDING PROTEIN; HET: CA; 2.84A {Homo sapiens}
Probab=30.03 E-value=81 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CChHHHHHHHHHHHHHHhC
Q FD01872972_027 47 NHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 47 NHP~Yn~yV~~~i~~L~~~ 65 (65)
.||.|.++|.+.|..|.+.
T Consensus 25 shP~~~~mI~~AI~~l~er 43 (190)
T 7XVM_V 25 SHPTYSEMIAAAIRAEKSR 43 (190)
T ss_dssp CCCCHHHHHHHHHHHSCCS
T ss_pred CCCCHHHHHHHHHHHhhcC
No 17
>1HST_A HISTONE H5; CHROMOSOMAL PROTEIN; 2.6A {Gallus gallus} SCOP: a.4.5.13
Probab=26.07 E-value=89 Score=17.50 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
||.|..+|.+.|.++.+.
T Consensus 7 ~~~~~~~i~~ai~~~~~~ 24 (90)
T 1HST_A 7 HPTYSEMIAAAIRAEKSR 24 (90)
T ss_dssp CCCHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHHHcccC
No 18
>PF21217.1 ; PaaA2 ; Stability determinant
Probab=26.05 E-value=1.7e+02 Score=14.98 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHHHHhC
Q FD01872972_027 50 AYSAYVKDKISELIKN 65 (65)
Q Consensus 50 ~Yn~yV~~~i~~L~~~ 65 (65)
+|..|++++|.+-.+.
T Consensus 5 ~~d~w~r~~v~~al~d 20 (33)
T A0A060NHG1_9BU 5 SYTAWLQAKVAASLAD 20 (33)
T ss_pred HHHHHHHHHHHHHHhC
No 19
>3LYH_B Cobalamin (Vitamin B12) biosynthesis CbiX protein; Putative cobalamin (vitamin B12) biosynthesis CbiX protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein; HET: MSE; 1.6A {Marinobacter aquaeolei}
Probab=25.98 E-value=2e+02 Score=16.98 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCChHHHHHHHHHHHHHHhC
Q FD01872972_027 46 GNHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 46 GNHP~Yn~yV~~~i~~L~~~ 65 (65)
|.||.+.+.+.+.+.+....
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~ 123 (126)
T 3LYH_B 104 GKNPRLGLAIRDVVKEELER 123 (126)
T ss_dssp GGSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc
No 20
>1GHC_A GH1; CHROMOSOMAL PROTEIN; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=25.48 E-value=1e+02 Score=15.78 Aligned_cols=18 Identities=11% Similarity=0.253 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred ChHHHHHHHHHHHHHHhC
Q FD01872972_027 48 HPAYSAYVKDKISELIKN 65 (65)
Q Consensus 48 HP~Yn~yV~~~i~~L~~~ 65 (65)
+|.|..+|.+.+..+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (75)
T 1GHC_A 3 GPSVTELITKAVSASKER 20 (75)
T ss_dssp SSSHCCCCCHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHcCCC
No 21
>8A22_Ub mL105; mitoribosome, ribosome, mitochondria, polytomella, fragmentation, rrna, evolution, translation; HET: K, ATP, MG; 2.91A {Polytomella magna}
Probab=24.51 E-value=1.4e+02 Score=21.95 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=0.0 Template_Neff=3.300
Q ss_pred HHHHHHHhhc-----ccchhcccccccCCcccccCCCCCCCCChHHHHHHHHH
Q FD01872972_027 11 KTFKTDLKKV-----TGYVQNVTKKAMDVTNLIDLDKPFHGNHPAYSAYVKDK 58 (65)
Q Consensus 11 k~~~~~lk~i-----~gy~q~~~~~~~~~~NL~~L~~pFHGNHP~Yn~yV~~~ 58 (65)
+|+-+.|... .||+|-......+..--..--.|-=++||.|..+|..+
T Consensus 2 ~E~~kqLe~~r~Mtm~gYveyc~~~~~g~~pPrPr~Ppv~~~h~dyr~~~D~~ 54 (131)
T 8A22_Ub 2 DEIIKLLESRKDMDVNGYVMYCREELGKLTVPRPRAPPVSPKHEDYKTFVDEE 54 (131)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcchhhhccHH
No 22
>PF12108.12 ; SF3a60_bindingd ; Splicing factor SF3a60 binding domain
Probab=23.72 E-value=94 Score=15.26 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHhhcccc
Q FD01872972_027 9 VWKTFKTDLKKVTGY 23 (65)
Q Consensus 9 v~k~~~~~lk~i~gy 23 (65)
+|.+|.+.|+.|+.|
T Consensus 7 ~~~~FY~~lk~ik~~ 21 (27)
T N1QF53_SPHMS/7 7 TYATFYDELNKIKDF 21 (27)
T ss_pred HHHHHHHHHHHHHHH
No 23
>PF14426.10 ; Imm2 ; Immunity protein Imm2
Probab=22.66 E-value=2.4e+02 Score=17.16 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred C-CChHHHHHHHHHHHHHHhC
Q FD01872972_027 46 G-NHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 46 G-NHP~Yn~yV~~~i~~L~~~ 65 (65)
| .+|....|.+++|.+++++
T Consensus 12 Gr~~~~~~~~~r~~I~~il~~ 32 (60)
T A0A0F6RSH6_PSE 12 GRSSDKVKRYHLDIIHGLLKE 32 (60)
T ss_pred CCCCHHHHHHHHHHHHHHHHh
No 24
>2OV6_A V-type ATP synthase subunit F; F subunit, A1Ao ATP synthase, HYDROLASE; NMR {Methanosarcina mazei}
Probab=22.18 E-value=2.4e+02 Score=17.55 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cccHHHHHHHHHHHhhcccchhcccccccCCcccccCCCCCCCCChHHHHHHHHHH
Q FD01872972_027 4 IIPQEVWKTFKTDLKKVTGYVQNVTKKAMDVTNLIDLDKPFHGNHPAYSAYVKDKI 59 (65)
Q Consensus 4 iIP~av~k~~~~~lk~i~gy~q~~~~~~~~~~NL~~L~~pFHGNHP~Yn~yV~~~i 59 (65)
+|.+.+++.....++.. .......-+..+|.+. +..-.+.++|++.+
T Consensus 49 ~i~e~~~~~~~~~~~~~--------~~~~~~P~ii~iP~~~-~~~~~l~~li~~ai 95 (101)
T 2OV6_A 49 VMHNDDIGNLPEVLRKN--------LNESVQPTVVALGGSG-SGSTSLREKIKQAV 95 (101)
T ss_dssp EEEHHHHTTCCCCCCHH--------HHHHCCSCEEEECTTS-SCCCCCCCCCSGGG
T ss_pred EEcHHHHhcCCHHHHHH--------HhhcCCCEEEEeCCCC-CcchhHHHHHHHHh
No 25
>PF18476.5 ; PIN_8 ; PIN like domain
Probab=21.72 E-value=2.7e+02 Score=19.17 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred cccHHHHHHHHHHHh----hcccchhcccccc-c------------CCcccccCCCCCCCCChHHHHHHHHHHHHHHh
Q FD01872972_027 4 IIPQEVWKTFKTDLK----KVTGYVQNVTKKA-M------------DVTNLIDLDKPFHGNHPAYSAYVKDKISELIK 64 (65)
Q Consensus 4 iIP~av~k~~~~~lk----~i~gy~q~~~~~~-~------------~~~NL~~L~~pFHGNHP~Yn~yV~~~i~~L~~ 64 (65)
+||..|+.|+...++ .....++...... . ........+..- +-......+.+.+.++.+
T Consensus 37 ~iP~~v~~E~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 112 (221)
T L0FY88_ECHVK/2 37 VIPNWVIHEYNSLLNNYSEHVFYPFKKRLRSLEKEISYLEEMGLLIADNEFSKRNGFT--NKHNFMSEIKSETESLRQ 112 (221)
T ss_pred EecHHHHHHHHHHHcccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccc--cHHHHHHHHHHHHHHHHH
No 26
>4U00_A Amino acid ABC transporter, ATP-binding protein; ABC amino acid transporter, Nucleotide binding domain, ATP binding protein, TRANSPORT PROTEIN; HET: ADP; 2.1A {Thermus thermophilus HB8} SCOP: c.37.1.0
Probab=21.68 E-value=2.9e+02 Score=17.92 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhC
Q FD01872972_027 40 LDKPFHGNHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 40 L~~pFHGNHP~Yn~yV~~~i~~L~~~ 65 (65)
++.|+.|-||.....+.+.|.++.+.
T Consensus 162 ~d~~~~~l~~~~~~~~~~~l~~~~~~ 187 (244)
T 4U00_A 162 FDEPTSALDPEMVGEVLDVMRDLAQG 187 (244)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHTS
T ss_pred eeCcccCCCHHHHHHHHHHHHHHHhC
No 27
>2XJ4_A MIPZ; REPLICATION, CELL DIVISION, ATPASE, WACA; 1.6A {CAULOBACTER CRESCENTUS}
Probab=21.59 E-value=3.2e+02 Score=18.98 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHHHHHhhcccchhcccccccCCcccccCCCCCCCCC
Q FD01872972_027 7 QEVWKTFKTDLKKVTGYVQNVTKKAMDVTNLIDLDKPFHGNH 48 (65)
Q Consensus 7 ~av~k~~~~~lk~i~gy~q~~~~~~~~~~NL~~L~~pFHGNH 48 (65)
....+++......|.+ .....++++..+++-||-.|
T Consensus 251 ~~~~~~~~~l~~~i~~------~~~~~~~~~~~~~~~~~~~~ 286 (286)
T 2XJ4_A 251 LAARQELRALMHSLGL------SAYSGETMLAAQGSHHHHHH 286 (286)
T ss_dssp HHHHHHHHHHHHHTTC------GGGCCCC-------------
T ss_pred HHHHHHHHHHHHHcCC------CCCCcccchhccCCCCCCCC
No 28
>7COW_T Histone H1.0; Nucleosome, H1.0, DNA BINDING PROTEIN-DNA complex, DNA BINDING PROTEIN; 2.86A {other sequences}
Probab=21.49 E-value=1.3e+02 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CChHHHHHHHHHHHHHHhC
Q FD01872972_027 47 NHPAYSAYVKDKISELIKN 65 (65)
Q Consensus 47 NHP~Yn~yV~~~i~~L~~~ 65 (65)
.||.|.++|.+.|..|.+.
T Consensus 25 s~P~~~~mI~eAi~~l~er 43 (195)
T 7COW_T 25 DHPKYSDMIVAAIQAEKNR 43 (195)
T ss_dssp CCCCTTSSSHHHHHTSCCS
T ss_pred CCCCHHHHHHHHHHHcccC