Query FD01851518_01498 type IV secretion protein Rhs
Match_columns 103
No_of_seqs 105 out of 111
Neff 5.43149
Searched_HMMs 86581
Date Mon Feb 26 21:13:42 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2345749.hhr -oa3m ../results/2345749.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14412.10 ; AHH ; A nuclease 99.0 1.2E-09 1.4E-14 76.0 6.1 79 1-87 17-133 (139)
2 PF09533.14 ; DUF2380 ; Predict 85.2 3.7 4.2E-05 32.2 4.7 72 1-85 100-178 (189)
3 PF05766.16 ; NinG ; Bacterioph 84.6 2.7 3.1E-05 31.2 3.6 71 1-88 109-191 (197)
4 PF06570.15 ; DUF1129 ; Protein 77.5 23 0.00026 26.3 6.3 48 51-100 4-52 (201)
5 PF15635.10 ; Tox-GHH2 ; GHH si 77.3 2.1 2.4E-05 29.2 0.8 13 2-14 2-14 (105)
6 PF06304.15 ; DUF1048 ; Protein 70.8 47 0.00054 22.6 6.2 52 51-102 22-73 (104)
7 2O4T_A BH3976 protein; LEFT-HA 70.4 50 0.00058 22.7 6.6 53 50-102 11-63 (100)
8 3HE5_B SYNZIP2; heterodimeric 67.6 45 0.00052 21.1 5.2 35 54-88 5-42 (52)
9 2O3L_B Hypothetical protein; S 66.7 53 0.00061 21.6 6.3 52 51-102 15-66 (85)
10 PF20015.3 ; VMAP-M12 ; vWA-Mox 56.3 69 0.0008 24.1 5.0 35 49-87 63-97 (136)
11 PF03790.17 ; KNOX1 ; KNOX1 dom 56.0 27 0.00031 20.1 2.5 34 49-82 8-42 (43)
12 6XOR_A Protein swallow; coiled 52.8 78 0.0009 21.7 4.5 32 52-84 28-60 (71)
13 PF13391.10 ; HNH_2 ; HNH endon 52.0 6.3 7.2E-05 21.5 -0.6 40 1-47 11-51 (62)
14 3BPJ_C Eukaryotic translation 47.4 1.2E+02 0.0014 19.9 4.8 37 49-88 32-69 (80)
15 2LSE_A Four Helix Bundle Prote 47.2 1.1E+02 0.0012 21.8 4.6 35 55-89 10-45 (101)
16 PF08597.14 ; eIF3_subunit ; Tr 46.7 93 0.0011 25.4 4.9 40 46-88 187-227 (273)
17 PF20849.1 ; TelK_muzzle ; Prot 44.9 78 0.0009 23.5 3.8 46 49-97 15-61 (118)
18 1UST_A HISTONE H1; DNA BINDING 38.6 77 0.00088 19.9 2.7 33 49-81 6-38 (93)
19 4HV0_B AvtR; ribbon-helix-heli 38.4 2.1E+02 0.0024 20.3 5.1 48 54-101 25-93 (106)
20 6R17_B Synaptonemal complex ce 36.8 2E+02 0.0023 20.6 4.9 30 52-85 67-96 (112)
21 1USS_A HISTONE H1; DNA BINDING 36.2 93 0.0011 19.1 2.8 33 49-81 6-38 (88)
22 1UHM_A Histone H1; winged heli 34.4 1.2E+02 0.0014 17.6 3.0 33 49-81 3-35 (78)
23 2RQP_A Heterochromatin protein 34.3 1.2E+02 0.0013 18.4 3.0 34 48-81 7-40 (88)
24 5J0J_C designed protein 2L6HC3 33.6 2.7E+02 0.0031 19.7 5.4 37 48-88 1-37 (79)
25 7XVM_V Histone H5; linker hist 33.1 1.1E+02 0.0013 23.6 3.3 33 49-81 25-57 (190)
26 1ABZ_A ALPHA-T-ALPHA; DE NOVO 32.3 1.9E+02 0.0022 17.5 3.9 34 55-88 6-39 (40)
27 2HH6_A BH3980 protein; 1017660 31.5 2.9E+02 0.0034 19.5 6.6 52 51-102 30-82 (113)
28 PF15819.9 ; Fibin ; Fin bud in 30.8 2.3E+02 0.0027 23.1 4.7 47 53-100 101-148 (196)
29 2KO2_A Reticulon-4; NOGO, memb 30.3 55 0.00063 21.2 1.1 18 4-22 6-23 (79)
30 6N9H_A amantadine-binding prot 30.3 3.1E+02 0.0036 19.4 5.5 37 48-88 1-38 (80)
31 PF00538.23 ; Linker_histone ; 29.8 1.7E+02 0.002 16.3 3.2 32 50-81 1-32 (73)
32 7YH8_C L-19437; heterochiral, 28.7 2.7E+02 0.0032 18.3 5.1 36 51-86 25-61 (62)
33 8E4V_A Isoform 3 of Histone ac 28.4 1.5E+02 0.0017 17.9 2.7 34 48-81 4-37 (84)
34 6PR1_B Siroheme synthase; prec 28.0 2.7E+02 0.0031 23.0 4.8 41 48-88 130-171 (457)
35 6JN2_B Histone-lysine N-methyl 28.0 3E+02 0.0035 18.5 5.4 39 51-89 37-75 (82)
36 PF13767.10 ; DUF4168 ; Domain 26.4 2.9E+02 0.0034 17.8 4.2 27 73-99 33-60 (76)
37 PF03574.19 ; Peptidase_S48 ; P 25.5 1E+02 0.0012 24.0 1.9 22 3-24 14-36 (149)
38 8OYV_B De novo designed solubl 25.4 3.1E+02 0.0036 21.6 4.4 30 51-88 73-102 (195)
39 4ZQA_A Sin3 histone deacetylas 24.0 3.3E+02 0.0038 17.6 5.3 41 48-88 4-70 (86)
40 2LSO_A Histone H1x; Structural 23.6 2.5E+02 0.0029 16.6 3.1 33 49-81 4-36 (83)
41 6YBW_z Eukaryotic translation 23.2 3.5E+02 0.0041 22.2 4.6 39 47-88 170-209 (258)
42 7EHP_A chitin oligosaccahride 22.8 5.4E+02 0.0062 20.0 5.4 39 51-89 359-397 (407)
43 5J73_D protein design 2L4HC2_9 22.5 4.2E+02 0.0049 18.8 4.2 34 55-88 26-61 (81)
44 7COW_T Histone H1.0; Nucleosom 22.5 2E+02 0.0023 22.1 3.0 33 49-81 25-57 (195)
45 PF15754.9 ; SPESP1 ; Sperm equ 21.6 7.2E+02 0.0083 22.0 6.2 52 49-100 227-295 (319)
46 7C0J_B Histone H5,Double-stran 21.6 2.6E+02 0.0031 16.1 2.9 33 49-81 6-38 (76)
47 1HST_A HISTONE H5; CHROMOSOMAL 21.3 2.4E+02 0.0028 17.2 2.8 33 49-81 6-38 (90)
48 4CKN_B SAS-6; STRUCTURAL PROTE 20.8 5.7E+02 0.0066 20.5 5.3 43 46-88 173-216 (226)
49 7RDH_G De novo designed protei 20.6 4.1E+02 0.0048 18.2 3.8 33 50-82 23-56 (77)
No 1
>PF14412.10 ; AHH ; A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=99.03 E-value=1.2e-09 Score=75.96 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=54.9 Template_Neff=9.200
Q ss_pred CCcccccCHHHHhhCHHHHH--------------Hh--hCCccccccccCCcccccccCC----------ccc-CCChHH
Q FD01851518_014 1 LDLHHIIPQEVWKTFKTDLK--------------KV--TGYVQNVTKKAMDVTNLIDLDK----------PFH-GNHPAY 53 (103)
Q Consensus 1 ~~~HHiIP~~v~k~~~~v~~--------------a~--~G~~~~~~f~~~~~~N~i~L~k----------~fH-GnHP~Y 53 (103)
+++|||||..+......... .+ .| |+++ .|++.||. +.| |+|+.|
T Consensus 17 ~~~HHiip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~--~N~i~LP~~~~~~~~~~~~~H~g~H~~Y 88 (139)
T Q2SED4_HAHCH/1 17 NQVHHIVNISSVRNGIEEIAKDLPDLRVLIVNGLLDEKYN------INYK--DNSLILPTQRSASAKTGLPSHYGSHPSY 88 (139)
T ss_pred cCceeeecHHHHHhchhhhhcCCchHhHHHHcchHHHhcC------CCCC--CCeeecCCchHHHhhhCCCcccCCChHH
Confidence 47899999996665543321 33 67 8888 99999985 378 999999
Q ss_pred HHHH----HHHHHHHH-HCch------hHHHHHHHHHHHHHHHHH
Q FD01851518_014 54 SAYV----KDKISELI-KNKK------LSLTELRNLQDELRSKIN 87 (103)
Q Consensus 54 ~~~V----~~~L~~~~-~~~~------~~~~~i~~L~~~lr~~I~ 87 (103)
+.+| ..+|+++. .... .+...+..|..+|+..+.
T Consensus 89 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 133 (139)
T Q2SED4_HAHCH/1 89 SKDILQHVKQALQPYKKIANEMKKNKPHSKPDPVELKKKLEDASK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHchhcCcccCCCHHHHHHHHHHHHH
Confidence 9999 99999876 3211 444455555555554443
No 2
>PF09533.14 ; DUF2380 ; Predicted lipoprotein of unknown function (DUF2380)
Probab=85.21 E-value=3.7 Score=32.21 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCcccccCHHHHhhCHHHHHHh--hCCccccccccCCcccccccCCccc-CCChH-HHHHHHHHHHHHH-HCc-hh-HHH
Q FD01851518_014 1 LDLHHIIPQEVWKTFKTDLKKV--TGYVQNVTKKAMDVTNLIDLDKPFH-GNHPA-YSAYVKDKISELI-KNK-KL-SLT 73 (103)
Q Consensus 1 ~~~HHiIP~~v~k~~~~v~~a~--~G~~~~~~f~~~~~~N~i~L~k~fH-GnHP~-Y~~~V~~~L~~~~-~~~-~~-~~~ 73 (103)
.+.|||+|++ +.+.+-. .| .+++. -.+.++...| ..|-. ....=.+.-.++. .+. +. +.+
T Consensus 100 ~e~HHifPQ~-----~~~~~~F~~~G------InIhd--ytv~i~~~~H~~IH~G~~gg~WN~~W~~fi~~n~~~a~T~~ 166 (189)
T E3FZI5_STIAD/5 100 LIKHHLFPQE-----ARLATWFRANG------INIHE--WTMLVPEQVHLRVHRGARGGLWNEAWRQYYEANSARPVSRE 166 (189)
T ss_pred cccccccchH-----HHHHHHHHHCC------Ccccc--eeeecCHHHhhhhccccccccHHHHHHHHHHHcCCCCCCHH
Q ss_pred HHHHHHHHHHHH
Q FD01851518_014 74 ELRNLQDELRSK 85 (103)
Q Consensus 74 ~i~~L~~~lr~~ 85 (103)
.|.+...+|...
T Consensus 167 eI~~~a~~L~~r 178 (189)
T E3FZI5_STIAD/5 167 ELLSKAFELALR 178 (189)
T ss_pred HHHHHHHHHHHH
No 3
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=84.63 E-value=2.7 Score=31.20 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCcccccCHHHHhhCHHHHHHhhCCccccccccCCcccccccCCc----ccCCChHHHHHHHHHHHHHH-HCch------
Q FD01851518_014 1 LDLHHIIPQEVWKTFKTDLKKVTGYVQNVTKKAMDVTNLIDLDKP----FHGNHPAYSAYVKDKISELI-KNKK------ 69 (103)
Q Consensus 1 ~~~HHiIP~~v~k~~~~v~~a~~G~~~~~~f~~~~~~N~i~L~k~----fHGnHP~Y~~~V~~~L~~~~-~~~~------ 69 (103)
+++||++|.. ..+-...+..|++.|-.. .||+.+.|..++..++.+-. +.-.
T Consensus 109 ~~~~Hi~~~~-----------------~~~~~~~~~~N~~~lC~~Ch~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~ 171 (197)
T A0A2U2GVX8_YER 109 YHAGHYLTVG-----------------ANPELRFNEDNCHRQCAPCNNHLSGNIEKYTPNLIAKIGQVRFDILMGPHEMT 171 (197)
T ss_pred ceeccccCcC-----------------CChhhcCChhhcHHhCHHHHhhccCCHHhhHHHHHHHHCHHHHHHHhCCCccc
Q ss_pred -hHHHHHHHHHHHHHHHHHH
Q FD01851518_014 70 -LSLTELRNLQDELRSKINA 88 (103)
Q Consensus 70 -~~~~~i~~L~~~lr~~I~~ 88 (103)
...+.++.+..+++..|..
T Consensus 172 k~~~~~~~~~~~~~~~~~~~ 191 (197)
T A0A2U2GVX8_YER 172 NYRRDDYIRIRDEYRAKTKA 191 (197)
T ss_pred CCCHHHHHHHHHHHHHHHHH
No 4
>PF06570.15 ; DUF1129 ; Protein of unknown function (DUF1129)
Probab=77.45 E-value=23 Score=26.32 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred hHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Q FD01851518_014 51 PAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINAAKASGKNLNDYF 100 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~F 100 (103)
|+..+|+++-...+. .. .....++++..++.+.+.+|++.|.+..++|
T Consensus 4 ~~n~~~~~~l~~~L~~~~--~~~~~~ee~l~~~~~~l~eaq~~G~s~~e~f 52 (201)
T Q38ZQ5_LATSS/2 4 KKNADYLFKFKRALKEEN--VSDEKQAEMLAEMLPEMLEAQHKGQPATQIY 52 (201)
T ss_pred HHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
No 5
>PF15635.10 ; Tox-GHH2 ; GHH signature containing HNH/Endo VII superfamily nuclease toxin 2
Probab=77.26 E-value=2.1 Score=29.19 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CcccccCHHHHhh
Q FD01851518_014 2 DLHHIIPQEVWKT 14 (103)
Q Consensus 2 ~~HHiIP~~v~k~ 14 (103)
+.|||||...++.
T Consensus 2 t~hHivpd~~fr~ 14 (105)
T G4T2Y2_META2/2 2 TPDHLIDVKSFVE 14 (105)
T ss_pred CCCceeeHHHhcc
No 6
>PF06304.15 ; DUF1048 ; Protein of unknown function (DUF1048)
Probab=70.80 E-value=47 Score=22.57 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred hHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcC
Q FD01851518_014 51 PAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKG 102 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~Fk~ 102 (103)
|.|..++.+-..-+..........++.+..+|-..+..|++.|.++.++|..
T Consensus 22 ~en~~~~~~i~~yl~~~~~~~~~~~e~il~~ll~~l~~Aq~~G~~~~~~~G~ 73 (104)
T A5N331_CLOK5/7 22 ADYQVAWGKIFANLLPHSDFTGRNLMPILDGVLGLLEEAAADGQSVQEALGD 73 (104)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHhcc
No 7
>2O4T_A BH3976 protein; LEFT-HANDED SUPERHELIX FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN; HET: PEG; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=70.44 E-value=50 Score=22.75 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred ChHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcC
Q FD01851518_014 50 HPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKG 102 (103)
Q Consensus 50 HP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~Fk~ 102 (103)
.|.|..+..+-..-+..........++.+..+|-+.+.+|+..|.++.++|..
T Consensus 11 ~~~~~~~~~~i~~Yl~~~~~~~~~~~e~il~dll~~l~eaq~~G~~~~~v~G~ 63 (100)
T 2O4T_A 11 PKDYQIVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGT 63 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHcCCCHHHHHCc
No 8
>3HE5_B SYNZIP2; heterodimeric coiled-coil, DE NOVO PROTEIN; 1.75A {artificial gene}
Probab=67.60 E-value=45 Score=21.08 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHH-HCch--hHHHHHHHHHHHHHHHHHH
Q FD01851518_014 54 SAYVKDKISELI-KNKK--LSLTELRNLQDELRSKINA 88 (103)
Q Consensus 54 ~~~V~~~L~~~~-~~~~--~~~~~i~~L~~~lr~~I~~ 88 (103)
+.|.+.++..+. ++-. .-.+.+++++..||+.|..
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiar 42 (52)
T 3HE5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHhHHHHHHHHHHHHHHHHHH
No 9
>2O3L_B Hypothetical protein; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function; HET: MSE, GOL; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=66.72 E-value=53 Score=21.58 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred hHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcC
Q FD01851518_014 51 PAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKG 102 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~Fk~ 102 (103)
|.|-.+..+-..-+...+......++.+..+|-+.+..|+..|+++.++|..
T Consensus 15 ~~~~~~~~~i~~Yl~~~~~~~~~~~e~il~~ll~~l~~aq~~G~~~~~~~G~ 66 (85)
T 2O3L_B 15 EDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGE 66 (85)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHhcc
No 10
>PF20015.3 ; VMAP-M12 ; vWA-MoxR associated protein middle region (VMAP-M) 12
Probab=56.29 E-value=69 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKIN 87 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~ 87 (103)
+-|.+-.+|++-|+++. .|.+--..|-..||.+|+
T Consensus 63 ~~p~fidfvekyl~kil----na~dikd~lkqklrkwie 97 (136)
T Q112W5_TRIEI/9 63 YDPKFIDFVEQYLVKIL----NAEDIRDYLKQRLRKWIE 97 (136)
T ss_pred cChHHHHHHHHHHHHhh----ChHhHHHHHHHHHHHHHH
No 11
>PF03790.17 ; KNOX1 ; KNOX1 domain
Probab=55.98 E-value=27 Score=20.10 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELI-KNKKLSLTELRNLQDEL 82 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~l 82 (103)
+||.|...+...++=.. ..+.+....+..+..+.
T Consensus 8 ~hp~~~~l~~a~~~c~kVgap~ev~~~l~~~~~e~ 42 (43)
T KNOSC_ORYSJ/90 8 AHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKL 42 (43)
T ss_pred cCcchHHHHHHHcCcccccCCHHHHHHHHHHHHhc
No 12
>6XOR_A Protein swallow; coiled coil, self-association domain, RNA BINDING PROTEIN; NMR {Drosophila melanogaster}
Probab=52.84 E-value=78 Score=21.72 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred HHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHH
Q FD01851518_014 52 AYSAYVKDKISELI-KNKKLSLTELRNLQDELRS 84 (103)
Q Consensus 52 ~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~ 84 (103)
.|+.|++.+|++-. +.- ..+..+..|..+|..
T Consensus 28 ~yndYLQ~kLdeK~~e~~-~lr~Nfe~lR~eLs~ 60 (71)
T 6XOR_A 28 GFNEYVQERLDRITDDFV-KMKDNFETLRTELSE 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
No 13
>PF13391.10 ; HNH_2 ; HNH endonuclease
Probab=52.03 E-value=6.3 Score=21.45 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCcccccCHHHHhhCHHHHHHh-hCCccccccccCCcccccccCCccc
Q FD01851518_014 1 LDLHHIIPQEVWKTFKTDLKKV-TGYVQNVTKKAMDVTNLIDLDKPFH 47 (103)
Q Consensus 1 ~~~HHiIP~~v~k~~~~v~~a~-~G~~~~~~f~~~~~~N~i~L~k~fH 47 (103)
.+..||+|.......... ... .. ..++...|++.|....|
T Consensus 11 ~~~ahi~~~~~~~~~~~~-~~~~~~------~~~~~~~N~i~l~~~~~ 51 (62)
T Q5KQA0_CRYNJ/1 11 CTASHIVPASRPDIYDCF-YGDGGG------LPMFRPSAGLLLRDDLH 51 (62)
T ss_pred eeEEEEecccchhhhhhh-cCCCCC------CCCCChHHhEEECchHH
No 14
>3BPJ_C Eukaryotic translation initiation factor 3 subunit J; translation initiation, eif3s1, structural genomics, limited proteolysis, Initiation factor, Phosphoprotein, Protein biosynthesis, Structural Genomics Consortium, SGC; 1.85A {Homo sapiens}
Probab=47.43 E-value=1.2e+02 Score=19.92 Aligned_cols=37 Identities=11% Similarity=0.348 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
.+|.|..+|..-|..+. . ...+.+++|...|...++.
T Consensus 32 ~s~~y~~F~~~llr~l~~~---l~~~d~k~l~~~l~~l~~e 69 (80)
T 3BPJ_C 32 KSLYYASFLEVLVRDVCIS---LEIDDLKKITNSLTVLCSE 69 (80)
T ss_dssp TSTTHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHH
No 15
>2LSE_A Four Helix Bundle Protein; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, DE NOVO PROTEIN; NMR {artificial gene}
Probab=47.24 E-value=1.1e+02 Score=21.84 Aligned_cols=35 Identities=6% Similarity=0.228 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHHH
Q FD01851518_014 55 AYVKDKISELI-KNKKLSLTELRNLQDELRSKINAA 89 (103)
Q Consensus 55 ~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~~ 89 (103)
.-.+..|++.. ..++.++++|++|..+.++.++.+
T Consensus 10 eklekildevtdgapdearerieklakdvkdeleeg 45 (101)
T 2LSE_A 10 EKLEKILDEVTDGAPDEARERIEKLAKDVKDELEEG 45 (101)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc
No 16
>PF08597.14 ; eIF3_subunit ; Translation initiation factor eIF3 subunit
Probab=46.70 E-value=93 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.440 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred ccCCChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 46 FHGNHPAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 46 fHGnHP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
+|+..|.|..+|..-|..+. . .....|++|+..|...++.
T Consensus 187 ~~~ks~~y~~Fl~~Llr~l~~~---L~~~dlrkl~s~l~~l~ne 227 (273)
T EIF3J_MAGO7/1- 187 SSGRKPHYNNFMEEFVRQLCAD---MPSENIKKISSKLTALSNE 227 (273)
T ss_pred ccCCChhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH
No 17
>PF20849.1 ; TelK_muzzle ; Protelomerase, muzzle domain
Probab=44.88 E-value=78 Score=23.53 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHH-cCCCHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAAKA-SGKNLN 97 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~~~-~G~klN 97 (103)
.||.|+..+..-++--.. +++.....|++.|+..+.=++. +|.++.
T Consensus 15 kyP~ya~~l~~~~~l~~a---eiR~~~~~L~~kLk~~~~L~e~l~~I~~~ 61 (118)
T A0A2Z2EKN0_9CA 15 KYPLYNEELSSWLSMPAA---SIRQNMSALQAKLKEIMPLAEDLSNIKIG 61 (118)
T ss_pred hChhhHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhHHHHHHHcCCCCC
No 18
>1UST_A HISTONE H1; DNA BINDING PROTEIN, LINKER HISTONE, DNA BINDING DOMAIN, WINGED HELIX FOLD; NMR {SACCHAROMYCES CEREVISIAE} SCOP: a.4.5.13
Probab=38.65 E-value=77 Score=19.91 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
+||.|..+|.+.+..+.+........|.+.+..
T Consensus 6 ~~p~~~~~i~~ai~~~~~~~G~s~~~i~k~i~~ 38 (93)
T 1UST_A 6 SSKSYRELIIEGLTALKERKGSSRPALKKFIKE 38 (93)
T ss_dssp CCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH
No 19
>4HV0_B AvtR; ribbon-helix-helix, DNA, TRANSCRIPTION, VIRAL PROTEIN; HET: MSE; 2.6A {Acidianus filamentous virus 6}
Probab=38.35 E-value=2.1e+02 Score=20.32 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHH-HCch----------------hHHHHHH---HHHHHHHHHHHHH-HHcCCCHHHHhc
Q FD01851518_014 54 SAYVKDKISELI-KNKK----------------LSLTELR---NLQDELRSKINAA-KASGKNLNDYFK 101 (103)
Q Consensus 54 ~~~V~~~L~~~~-~~~~----------------~~~~~i~---~L~~~lr~~I~~~-~~~G~klNd~Fk 101 (103)
+++|++.|.+.. .... ...++++ ++.+.+...|.+- ++.|+++|.+.+
T Consensus 25 SelIReAI~~yl~~~~~~~~~~~~~g~~~~~~~~~~ey~R~~~~~~~~~~~~~~~~~~~~~~s~n~l~~ 93 (106)
T 4HV0_B 25 PAVIRKILKEYFGIEDRTRDYKRQDLEGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLK 93 (106)
T ss_dssp HHHHHHHHHHHHCCCCCCCCC------CCEEEETTEEEEEECCCCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhccccccchhhhhcccccccCCChhHHHHHHhhccHHHHHHHHHHHHHhCCCHHHHHH
No 20
>6R17_B Synaptonemal complex central element protein 2; Synaptonemal complex meiosis recombination coiled-coil self-assembly SYCE2 TEX12 STRUCTURAL PROTEIN, STRUCTURAL PROTEIN; 2.424A {Homo sapiens}
Probab=36.80 E-value=2e+02 Score=20.58 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHH
Q FD01851518_014 52 AYSAYVKDKISELIKNKKLSLTELRNLQDELRSK 85 (103)
Q Consensus 52 ~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~ 85 (103)
..++.++.+|.++. ...+++.+|..+|+..
T Consensus 67 ~~~~~iq~kLqeL~----~vLeri~~le~EL~~~ 96 (112)
T 6R17_B 67 DHNKIIQEKLQEFT----QKMAKISHLETELKQV 96 (112)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
No 21
>1USS_A HISTONE H1; DNA BINDING PROTEIN, LINKER HISTONE, DNA BINDING DOMAIN; NMR {SACCHAROMYCES CEREVISIAE} SCOP: a.4.5.13
Probab=36.18 E-value=93 Score=19.15 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
+||.|..+|.+.+..+.+........|.+.+..
T Consensus 6 s~p~~~~mi~~ai~~~~~~~g~s~~~i~~~i~~ 38 (88)
T 1USS_A 6 SSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKD 38 (88)
T ss_dssp SSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
No 22
>1UHM_A Histone H1; winged helix-turn-helix, linker histone, S. cerevisiae, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, STRUCTURAL PROTEIN; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=34.37 E-value=1.2e+02 Score=17.55 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
.||.|...|.+.+..+.+........|.+....
T Consensus 3 ~~p~~~~~i~~ai~~~~~~~g~s~~~i~~~~~~ 35 (78)
T 1UHM_A 3 SSKSYRELIIEGLTALKERKGSSRPALKKFIKE 35 (78)
T ss_dssp CCCCHHHHHHHHHHHHCCSSCEEHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
No 23
>2RQP_A Heterochromatin protein 1-binding protein 3; heterochromatin protein 1 binding protein, histone H1, heterochromatin protein 1, Alternative splicing, Chromosomal protein, DNA-binding, Nucleus; NMR {Homo sapiens} SCOP: a.4.5.0, l.1.1.1
Probab=34.31 E-value=1.2e+02 Score=18.37 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 48 GNHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 48 GnHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
.+||.|..+|.+.+..+.+........|.+....
T Consensus 7 ~~~p~~~~~i~~ai~~~~~~~g~s~~~i~~~~~~ 40 (88)
T 2RQP_A 7 SPRPKMDAILTEAIKACFQKSGASVVAIRKYIIH 40 (88)
T ss_dssp CCCCCHHHHHHHCCCCCHHHTCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH
No 24
>5J0J_C designed protein 2L6HC3_6; rosetta, de novo design, DE NOVO PROTEIN; 2.256A {synthetic construct}
Probab=33.57 E-value=2.7e+02 Score=19.67 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=0.0 Template_Neff=2.800
Q ss_pred CCChHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 48 GNHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 48 GnHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
|+|=.-..++++.|.++. .+...++++..+|+...+.
T Consensus 1 GSHMGT~dei~~~l~ele----r~L~Elrk~~eel~e~Lee 37 (79)
T 5J0J_C 1 GSHMGTKYKIKETLKRLE----DSLRELRRILEELKEMLER 37 (79)
T ss_dssp -----CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
No 25
>7XVM_V Histone H5; linker histone, nucleosome binding, chromatin structure, chromatin compaction, histone variants, STRUCTURAL PROTEIN-DNA complex, DNA BINDING PROTEIN; HET: CA; 2.84A {Homo sapiens}
Probab=33.15 E-value=1.1e+02 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
+||.|..+|.+.|..+.+........|...+..
T Consensus 25 shP~~~~mI~~AI~~l~er~GsS~~aIkk~i~~ 57 (190)
T 7XVM_V 25 SHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKS 57 (190)
T ss_dssp CCCCHHHHHHHHHHHSCCSSCEEHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
No 26
>1ABZ_A ALPHA-T-ALPHA; DE NOVO DESIGN, HELIX-TURN-HELIX; HET: SIN, NH2; NMR {N/A} SCOP: k.15.1.1
Probab=32.26 E-value=1.9e+02 Score=17.50 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 55 AYVKDKISELIKNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 55 ~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
..|+.+|..+...+.+....++.+...|+..|++
T Consensus 6 arveqelqaleargtdsnaelrameaklkaeiqk 39 (40)
T 1ABZ_A 6 ARVEQELQALEARGTDSNAELRAMEAKLKAEIQK 39 (40)
T ss_dssp HHHHHHHHHHHHTCSSCSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhC
No 27
>2HH6_A BH3980 protein; 10176605, BH3980, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, unknown function; HET: MSE; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=31.46 E-value=2.9e+02 Score=19.47 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred hHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcC
Q FD01851518_014 51 PAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINAAKASGKNLNDYFKG 102 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~Fk~ 102 (103)
|.|..+..+-..-+. ...-.....+..+..+|-..+.+|++.|.++.++|..
T Consensus 30 ~~~~~~~~~i~~Yl~~~~~~~~~~~~e~~l~dll~~l~eaq~~G~~~~~v~G~ 82 (113)
T 2HH6_A 30 KEYHHAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAEGKKVTDLTGE 82 (113)
T ss_dssp HHHHHHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHCc
No 28
>PF15819.9 ; Fibin ; Fin bud initiation factor homologue
Probab=30.78 E-value=2.3e+02 Score=23.14 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=0.0 Template_Neff=2.900
Q ss_pred HHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Q FD01851518_014 53 YSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINAAKASGKNLNDYF 100 (103)
Q Consensus 53 Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~~~~~G~klNd~F 100 (103)
|.+|.++++.+|. ... .+...+.+|..++++--+....-...||+.|
T Consensus 101 Yg~yLrrE~sQI~eAfs-~sdkSL~ELE~KFkQsQe~e~rEe~~l~~~f 148 (196)
T I3L9M3_PIG/15- 101 YGKYLRRESHQIGDAYS-NSDKSLTELESKFKQGQEQDSRQESRLNEDF 148 (196)
T ss_pred HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhchhHHHhhHHH
No 29
>2KO2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin inhibitor, Endoplasmic reticulum, Membrane, Phosphoprotein, Transmembrane; NMR {Mus musculus}
Probab=30.27 E-value=55 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.715 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred ccccCHHHHhhCHHHHHHh
Q FD01851518_014 4 HHIIPQEVWKTFKTDLKKV 22 (103)
Q Consensus 4 HHiIP~~v~k~~~~v~~a~ 22 (103)
||++|+. ++-+..+..++
T Consensus 6 ~~~~~~~-fRiy~~vl~~~ 23 (79)
T 2KO2_A 6 HHLVPRG-MRIYKGVIQAI 23 (79)
T ss_dssp --------CTHHHHTHHHH
T ss_pred cccccch-HHHHHHHHHHh
No 30
>6N9H_A amantadine-binding protein; helical bundle, trimer, amantadine-binding protein, DE NOVO PROTEIN; HET: 308; 1.039A {synthetic construct}
Probab=30.26 E-value=3.1e+02 Score=19.41 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=0.0 Template_Neff=2.800
Q ss_pred CCChH-HHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 48 GNHPA-YSAYVKDKISELIKNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 48 GnHP~-Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
|+|=. -+.++++.|.++. .+...++++..+|+...+.
T Consensus 1 GSHMG~t~~eir~aleele----r~l~Elrk~~eel~~~Lee 38 (80)
T 6N9H_A 1 GSHMGDAQDKLKYLVKQLE----RALRELKKSLDELERSLEE 38 (80)
T ss_dssp -----CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
No 31
>PF00538.23 ; Linker_histone ; linker histone H1 and H5 family
Probab=29.83 E-value=1.7e+02 Score=16.30 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred ChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 50 HPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 50 HP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
||.|...|.+.+..+.+........|.+....
T Consensus 1 ~p~~~~~v~~~~~~~~~~~g~s~~~i~~~~~~ 32 (73)
T B3RQA0_TRIAD/2 1 HPKYIEMISAAIRALNERSGSSRQAISKWITA 32 (73)
T ss_pred CCcHHHHHHHHHHHhccCCCCCHHHHHHHHHH
No 32
>7YH8_C L-19437; heterochiral, miniprotein, alpha helix, D-protein, D-peptide, mirror-image, de novo, designer, DE NOVO PROTEIN; HET: DLY, DLE, DHI, DAS, DPN, DTR, DTY, DAR, DIL, DAL, DGL, DTH; 2.2A {synthetic construct}
Probab=28.70 E-value=2.7e+02 Score=18.27 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred hHHHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHHHH
Q FD01851518_014 51 PAYSAYVKDKISELIKNKK-LSLTELRNLQDELRSKI 86 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~-~~~~~i~~L~~~lr~~I 86 (103)
|......++-|+.....++ .+..++-+|+..|+..+
T Consensus 25 pelariarevlerarklgneeaarfvlelierlrrel 61 (62)
T 7YH8_C 25 PELARIAREVLERARKLGNEEAARFVLELIERLRREL 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHh
No 33
>8E4V_A Isoform 3 of Histone acetyltransferase KAT6B; MORF, winged helix, DNA, histone, chromatin, TRANSCRIPTION; NMR {Homo sapiens}
Probab=28.43 E-value=1.5e+02 Score=17.89 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 48 GNHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 48 GnHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
+.||.|..+|.+.+..+.+........|.+-+..
T Consensus 4 ~~~~~~~~~v~~a~~~~~~~~g~s~~~i~~~~~~ 37 (84)
T 8E4V_A 4 LRNVDWNKLLRRAIEGLEEPNGSSLKNIEKYLRS 37 (84)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
No 34
>6PR1_B Siroheme synthase; precorrin-2, tetrapyrrole biosynthesis, CysG, TRANSFERASE; HET: SAH; 1.82A {Salmonella typhimurium} SCOP: c.2.1.0, c.90.1.1, e.37.1.0
Probab=28.03 E-value=2.7e+02 Score=22.96 Aligned_cols=41 Identities=12% Similarity=0.325 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 48 GNHPAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 48 GnHP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
|.-|.....++++|+++. ..-....+.+..+...++..+.+
T Consensus 130 g~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 171 (457)
T 6PR1_B 130 GTSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFAT 171 (457)
T ss_dssp TSCHHHHHHHHHHHHHHSCTTHHHHHHHHHHSHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHhhHHHHHHHHHHHh
No 35
>6JN2_B Histone-lysine N-methyltransferase, H3 lysine-79 specific; hDOT1L, hAF10, Leucine zipper, heterodimer, tetramerization, TRANSFERASE; 3.6A {Homo sapiens}
Probab=28.01 E-value=3e+02 Score=18.47 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred hHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Q FD01851518_014 51 PAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAA 89 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~ 89 (103)
|.|...|...|+.-..........+..|...+...+++.
T Consensus 37 p~y~~~l~~qI~~Ek~r~~~L~~~~~~Lekqi~~L~~~~ 75 (82)
T 6JN2_B 37 PQYKASLQELLGQEKEKNAQLLGAAQQLLSHCQAQKEEI 75 (82)
T ss_dssp SSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 36
>PF13767.10 ; DUF4168 ; Domain of unknown function (DUF4168)
Probab=26.36 E-value=2.9e+02 Score=17.78 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHH
Q FD01851518_014 73 TELRNLQDELRSKINAA-KASGKNLNDY 99 (103)
Q Consensus 73 ~~i~~L~~~lr~~I~~~-~~~G~klNd~ 99 (103)
..++.|+.+....+..+ ++.|.++.+|
T Consensus 33 ~~~~~i~~~~~~~~~~~I~~~GLt~~~y 60 (76)
T Q2JIP9_SYNJB/1 33 EERRQIEQQFEAAAAEIIVAHQLTPEDY 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH
No 37
>PF03574.19 ; Peptidase_S48 ; Peptidase family S48
Probab=25.53 E-value=1e+02 Score=24.01 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=0.0 Template_Neff=2.700
Q ss_pred cccccCHHHHhhCHHHHHHh-hC
Q FD01851518_014 3 LHHIIPQEVWKTFKTDLKKV-TG 24 (103)
Q Consensus 3 ~HHiIP~~v~k~~~~v~~a~-~G 24 (103)
+|||=|..|..=-..|+.|+ +|
T Consensus 14 LHHiEPKRVKaIV~Ev~~aL~eG 36 (149)
T K9S9X0_9CYAN/5 14 LHHIEPKRVKVIVEEVRQALTEG 36 (149)
T ss_pred ccccCchHHHHHHHHHHHHHHhC
No 38
>8OYV_B De novo designed soluble Claudin; claudin, solubilized, de novo designed, DE NOVO PROTEIN; 2.79A {synthetic construct}
Probab=25.42 E-value=3.1e+02 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred hHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 51 PAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
|-|++|+..--+.+. .+++||.+|...+++
T Consensus 73 piynkyietlkealk--------tveklqeeleellen 102 (195)
T 8OYV_B 73 PIYNKYIETLKEALK--------TVEKLQEELEELLEN 102 (195)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc
No 39
>4ZQA_A Sin3 histone deacetylase corepressor complex component SDS3; transcription repression, histone deacetylase complex, coiled-coil, corepressor complex, TRANSCRIPTION REPRESSOR; 1.65A {Mus musculus}
Probab=24.04 E-value=3.3e+02 Score=17.58 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCChHHHHHHHHHHHHHH-HCch-------------------------hHHHHHHHHHHHHHHHHHH
Q FD01851518_014 48 GNHPAYSAYVKDKISELI-KNKK-------------------------LSLTELRNLQDELRSKINA 88 (103)
Q Consensus 48 GnHP~Y~~~V~~~L~~~~-~~~~-------------------------~~~~~i~~L~~~lr~~I~~ 88 (103)
|.||.|-..+..--.... .... ........|.+.|-..++.
T Consensus 4 gthpe~~~~~~~le~~~~~rl~~a~~~~~~~~~~i~~~y~~e~~~a~~~~~~~~~~l~~~l~~~l~~ 70 (86)
T 4ZQA_A 4 GTLQEYQKRMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEE 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>2LSO_A Histone H1x; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, NUCLEAR PROTEIN; NMR {Homo sapiens} SCOP: a.4.5.0, l.1.1.1
Probab=23.64 E-value=2.5e+02 Score=16.56 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
+||.|...|.+.+..+.+........|.+.+..
T Consensus 4 ~~p~~~~~i~~ai~~~~~~~G~s~~~i~~~~~~ 36 (83)
T 2LSO_A 4 QPGKYSQLVVETIRRLGERNGSSLAKIYTEAKK 36 (83)
T ss_dssp CSCHHHHHHHHHHHHHCCSSCEEHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhCcCCCCcHHHHHHHHHh
No 41
>6YBW_z Eukaryotic translation initiation factor 3 subunit J; eIF3, ribosome, translation, initiation complex; HET: OMU, 6MZ, OMG, UR3, PSU, MG, MA6, A2M, OMC, 5MU;{Homo sapiens}
Probab=23.20 E-value=3.5e+02 Score=22.24 Aligned_cols=39 Identities=10% Similarity=0.305 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cCCChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 47 HGNHPAYSAYVKDKISELI-KNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 47 HGnHP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
+...|.|..+|..-|..+. . .....|++|...|...++.
T Consensus 170 ~~ks~~y~~Fl~~L~r~l~~~---L~~~dikkl~s~l~~l~ne 209 (258)
T 6YBW_z 170 YEKSLYYASFLEVLVRDVCIS---LEIDDLKKITNSLTVLCSE 209 (258)
T ss_dssp CCSTTCCCCCHHHHHHHHHHH---SCSSHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH
No 42
>7EHP_A chitin oligosaccahride binding protein NagB1; chitin oligosaccahride, SUGAR BINDING PROTEIN; HET: NAG; 2.01A {Paenibacillus sp. FPU-7} SCOP: c.94.1.0
Probab=22.77 E-value=5.4e+02 Score=20.02 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred hHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Q FD01851518_014 51 PAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINAA 89 (103)
Q Consensus 51 P~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~~ 89 (103)
+.+...+...+.++......+.+.++.++.++++.|+++
T Consensus 359 ~~~~~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l~~~ 397 (407)
T 7EHP_A 359 AKVRETLEMCMQELIGGRMTVEQVLDKMQKVQEDANRDM 397 (407)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
No 43
>5J73_D protein design 2L4HC2_9; rosetta, de novo design, DE NOVO PROTEIN; 2.56A {synthetic construct}
Probab=22.51 E-value=4.2e+02 Score=18.83 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred HHHHHHHHHHH--HCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 55 AYVKDKISELI--KNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 55 ~~V~~~L~~~~--~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
.-+++.|+++. ...+...+.+.+|+.+|+..|..
T Consensus 26 ~Elkk~L~el~r~~~E~~S~d~L~eLirel~eiie~ 61 (81)
T 5J73_D 26 EEAEERLERVKEASKRGVSSDQLLDLIRELAEIIEE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
No 44
>7COW_T Histone H1.0; Nucleosome, H1.0, DNA BINDING PROTEIN-DNA complex, DNA BINDING PROTEIN; 2.86A {other sequences}
Probab=22.46 E-value=2e+02 Score=22.12 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
.||.|.++|.+.|..+.+........|...+..
T Consensus 25 s~P~~~~mI~eAi~~l~er~GsS~~aI~k~i~~ 57 (195)
T 7COW_T 25 DHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKS 57 (195)
T ss_dssp CCCCTTSSSHHHHHTSCCSSCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcccCCCCCHHHHHHHHHH
No 45
>PF15754.9 ; SPESP1 ; Sperm equatorial segment protein 1
Probab=21.58 E-value=7.2e+02 Score=21.97 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred CChHHHHHHHHHHHHHH-HCch--hHHHHHHHHHH--------------HHHHHHHHHHHcCCCHHHHh
Q FD01851518_014 49 NHPAYSAYVKDKISELI-KNKK--LSLTELRNLQD--------------ELRSKINAAKASGKNLNDYF 100 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~-~~~~--~~~~~i~~L~~--------------~lr~~I~~~~~~G~klNd~F 100 (103)
++|.|.++|+..=+-+. .+.= .|.-.++++-. +|+..|+---.+.-+|.+||
T Consensus 227 ~~Pe~ke~I~aske~LkrsLaLA~aAEhKL~kmy~S~~~p~g~~~~~~~dietvIN~LYnsrskLs~Yl 295 (319)
T SPESP_HUMAN/20 227 SNPAYREDIEASKDHLKRSLALAAAAEHKLKTMYKSQLLPVGRTSNKIDDIETVINMLCNSRSKLYEYL 295 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChHHhHHHHHHHHhhcchhHHHHh
No 46
>7C0J_B Histone H5,Double-stranded RNA-specific adenosine deaminase; GH5, Protein-DNA complex, protein engineering, Z-DNA binding protein, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 2.75A {Gallus gallus}
Probab=21.56 E-value=2.6e+02 Score=16.15 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
.||.|..+|...+..+..........|.+....
T Consensus 6 s~~~~~~~i~~~~~~~~~~~g~s~~~i~~~~~~ 38 (76)
T 7C0J_B 6 SHPTYSEMIAAAIRAEGEGGGSSRQSIQAYIKS 38 (76)
T ss_dssp --CCHHHHHHHHHHHCC---CEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
No 47
>1HST_A HISTONE H5; CHROMOSOMAL PROTEIN; 2.6A {Gallus gallus} SCOP: a.4.5.13
Probab=21.34 E-value=2.4e+02 Score=17.16 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CChHHHHHHHHHHHHHHHCchhHHHHHHHHHHH
Q FD01851518_014 49 NHPAYSAYVKDKISELIKNKKLSLTELRNLQDE 81 (103)
Q Consensus 49 nHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~ 81 (103)
.||.|..+|.+.+..+.+........|.+.+..
T Consensus 6 ~~~~~~~~i~~ai~~~~~~~G~s~~~i~~~i~~ 38 (90)
T 1HST_A 6 SHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKS 38 (90)
T ss_dssp CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcccCCCCCHHHHHHHHHH
No 48
>4CKN_B SAS-6; STRUCTURAL PROTEIN, BASAL BODY, CENTRIOLE, CARTWHEEL, TRYPANOSOMATIDS; 2.9A {LEISHMANIA MAJOR}
Probab=20.81 E-value=5.7e+02 Score=20.51 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred cc-CCChHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Q FD01851518_014 46 FH-GNHPAYSAYVKDKISELIKNKKLSLTELRNLQDELRSKINA 88 (103)
Q Consensus 46 fH-GnHP~Y~~~V~~~L~~~~~~~~~~~~~i~~L~~~lr~~I~~ 88 (103)
|+ ++.-.+-.++..++..+........+.+..+..+|++.+..
T Consensus 173 ~~~a~d~~ik~~l~~r~~~lk~~~~~l~~~l~~l~~el~~~~~~ 216 (226)
T 4CKN_B 173 LLRQGDAGLKRYLAERFQHYEQSFRASEASRAVITAELQEKIGD 216 (226)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 49
>7RDH_G De novo designed protein H3mb; de novo design, mini protein, HA stem binder, VIRAL PROTEIN, VIRAL PROTEIN-DE NOVO PROTEIN complex; HET: BMA, NAG; 2.75A {Influenza A virus (strain A/Hong Kong/1/1968 H3N2)}
Probab=20.59 E-value=4.1e+02 Score=18.17 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred ChHHHHHHHHHHHHHH-HCchhHHHHHHHHHHHH
Q FD01851518_014 50 HPAYSAYVKDKISELI-KNKKLSLTELRNLQDEL 82 (103)
Q Consensus 50 HP~Y~~~V~~~L~~~~-~~~~~~~~~i~~L~~~l 82 (103)
|.++-+|+-+++++.. .-.....+++-+|....
T Consensus 23 hekflewmlrkieeaikrgnkisaeflinlaknf 56 (77)
T 7RDH_G 23 HEKFLEWMLRKIEEAIKRGNKISAEFLINLAKNF 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH