Query FD01848239_02317 type IV secretion protein Rhs
Match_columns 99
No_of_seqs 118 out of 695
Neff 7.14392
Searched_HMMs 86581
Date Mon Feb 26 21:12:03 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/1612204.hhr -oa3m ../results/1612204.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14412.10 ; AHH ; A nuclease 99.5 1.2E-14 1.4E-19 97.1 4.7 90 1-98 17-131 (139)
2 PF09533.14 ; DUF2380 ; Predict 96.6 0.009 1E-07 43.7 4.7 73 1-94 100-178 (189)
3 PF05120.16 ; GvpG ; Gas vesicl 83.2 13 0.00015 23.1 5.7 37 61-97 31-67 (72)
4 PF21648.1 ; M1E1E6-like ; Inte 81.6 8.7 0.0001 25.7 4.7 37 59-95 64-100 (104)
5 1GZS_D SOPE; TOXIN/CELL CYCLE, 80.4 31 0.00036 25.4 7.4 84 15-98 64-163 (165)
6 3FY6_D Integron cassette prote 75.9 15 0.00018 25.5 4.7 37 59-95 73-109 (126)
7 PF07487.17 ; SopE_GEF ; SopE G 74.2 41 0.00047 23.8 6.5 77 15-98 35-134 (134)
8 PF15635.10 ; Tox-GHH2 ; GHH si 72.7 3 3.4E-05 27.1 0.6 10 2-11 2-11 (105)
9 PF13391.10 ; HNH_2 ; HNH endon 69.2 2.7 3.1E-05 22.2 -0.1 36 1-36 11-49 (62)
10 2JOK_A Putative G-nucleotide e 66.3 67 0.00078 24.2 6.4 78 15-98 69-168 (186)
11 6AZ3_O 60S ribosomal protein L 63.3 90 0.001 24.9 7.0 65 28-98 174-259 (305)
12 5T5H_u 60S ribosomal protein L 62.9 67 0.00077 24.9 6.1 65 28-98 169-254 (254)
13 6TH6_BQ 50S ribosomal protein 62.4 66 0.00077 23.8 5.9 65 28-98 126-195 (201)
14 PF05766.16 ; NinG ; Bacterioph 57.5 28 0.00032 24.8 3.2 74 1-97 109-191 (197)
15 7P9K_B DUF262 domain-containin 56.1 13 0.00015 30.4 1.5 39 1-39 471-519 (587)
16 PF19551.3 ; DUF6074 ; Family o 51.5 92 0.0011 19.5 5.9 39 60-98 33-71 (81)
17 8HL4_L18P 50S ribosomal protei 50.8 1.5E+02 0.0017 21.7 6.4 64 28-98 125-193 (193)
18 6XOR_A Protein swallow; coiled 48.0 1.1E+02 0.0013 19.5 4.6 40 58-97 28-67 (71)
19 PF11867.12 ; T1RH-like_C ; Typ 47.9 1.3E+02 0.0015 23.1 5.6 42 57-98 198-239 (334)
20 8A3D_G 60S ribosomal protein L 47.1 2.2E+02 0.0025 22.5 6.7 65 28-98 168-250 (297)
21 4V8P_BM 60S RIBOSOMAL PROTEIN 46.1 1.6E+02 0.0018 23.5 5.9 65 28-98 168-257 (301)
22 6ZU5_LD0 uL18; Microsporidia, 45.0 2.2E+02 0.0026 22.0 7.3 65 28-98 144-225 (266)
23 3BHP_B UPF0291 protein ynzC; N 44.4 1.2E+02 0.0013 18.6 5.1 39 61-99 4-45 (60)
24 1VQ8_N 50S ribosomal protein L 44.0 1.2E+02 0.0014 22.3 4.7 58 28-98 125-183 (187)
25 6ZJ3_Ld Ribosomal protein uL18 43.4 2.4E+02 0.0027 21.9 6.4 65 28-98 166-248 (260)
26 2LSE_A Four Helix Bundle Prote 42.9 1.5E+02 0.0017 19.5 4.5 37 61-99 6-42 (101)
27 7YH8_C L-19437; heterochiral, 39.8 1.4E+02 0.0016 18.1 4.8 37 57-99 25-61 (62)
28 PF15188.10 ; CCDC-167 ; Coiled 37.9 1.7E+02 0.002 18.7 5.0 38 61-99 14-51 (84)
29 PF14357.10 ; DUF4404 ; Domain 37.8 1.4E+02 0.0016 18.8 3.8 37 63-99 1-37 (85)
30 3FXD_A Protein IcmQ; 4 helix b 37.7 1.5E+02 0.0017 18.0 4.8 43 57-99 4-46 (57)
31 7R81_G1 60S ribosomal protein 36.4 2.1E+02 0.0024 22.9 5.3 65 28-98 171-253 (301)
32 PF10520.13 ; Lipid_desat ; Lip 36.3 37 0.00043 24.2 1.1 21 1-21 34-54 (178)
33 8FJG_A H12; De novo protein, H 36.1 2.1E+02 0.0024 19.1 5.5 43 57-99 57-100 (109)
34 PF15500.10 ; Ntox1 ; Putative 35.9 2E+02 0.0024 19.9 4.4 35 60-97 47-94 (109)
35 1GW3_A APOA-I; HIGH DENSITY LI 34.9 1.3E+02 0.0015 16.4 5.1 40 59-99 3-44 (46)
36 6NZ1_C Design construct XXA_GV 34.5 2.2E+02 0.0026 19.0 6.5 43 48-97 1-45 (98)
37 6DM9_D DHD15_extended_B; Compu 34.1 2E+02 0.0023 18.4 5.4 44 56-99 17-60 (78)
38 PF09677.14 ; TrbI_Ftype ; Type 34.0 2.1E+02 0.0025 18.7 5.0 37 63-99 31-67 (103)
39 7QCA_LD0 60S ribosomal protein 33.2 3.7E+02 0.0043 21.2 7.2 65 28-98 172-253 (291)
40 6DMP_B Designed orthogonal pro 32.3 2.1E+02 0.0024 18.3 3.8 33 61-97 24-56 (82)
41 6DM9_C DHD15_extended_A; Compu 31.5 2.3E+02 0.0026 18.2 5.4 44 56-99 17-60 (78)
42 PF16305.9 ; DUF4947 ; Domain o 31.5 3.5E+02 0.004 20.3 5.3 35 59-93 88-122 (167)
43 PF19903.3 ; DUF6376 ; Family o 31.4 2.8E+02 0.0033 19.3 5.2 42 58-99 68-110 (116)
44 5FBM_A DNA-binding protein HU; 31.0 2.1E+02 0.0025 17.8 4.0 32 68-99 5-37 (99)
45 5TN2_D HTH-type transcriptiona 30.1 1.5E+02 0.0018 16.8 2.8 36 48-89 1-36 (47)
46 8AZW_h uL18 (60S ribosomal pro 29.8 3.2E+02 0.0037 21.6 5.3 65 28-98 167-249 (301)
47 3HE5_B SYNZIP2; heterodimeric 29.0 2E+02 0.0023 16.8 4.4 36 60-99 5-40 (52)
48 7C70_B Sugar ABC transporter, 28.7 4.1E+02 0.0047 20.2 6.1 42 57-98 374-415 (423)
49 PF20136.3 ; DUF6526 ; Family o 28.6 2E+02 0.0024 20.7 3.7 30 65-94 111-140 (144)
50 PF21616.1 ; Topo-V_HhH_2_2nd ; 28.2 2.2E+02 0.0026 17.1 3.8 34 56-89 23-57 (58)
51 2HEP_A UPF0291 protein ynzC; S 27.6 2.9E+02 0.0034 18.2 5.1 39 61-99 4-45 (85)
52 2YXY_A Hypothetical conserved 27.5 2.3E+02 0.0026 19.8 3.6 30 67-98 4-33 (115)
53 6P4X_B Glucokinase-1; hexokina 27.2 3.7E+02 0.0043 22.0 5.4 41 56-99 7-47 (500)
54 PF21106.1 ; YtxK_like ; YtxK N 26.9 1.8E+02 0.0021 18.2 3.0 30 60-89 44-73 (80)
55 PF05979.16 ; DUF896 ; Bacteria 26.9 2.5E+02 0.0029 17.2 4.7 37 63-99 2-41 (61)
56 PF04690.17 ; YABBY ; YABBY pro 26.4 2.7E+02 0.0031 19.9 4.0 32 57-90 113-144 (156)
57 7KDF_B NUF2 isoform 1,NUF2 iso 26.0 2.5E+02 0.0028 20.7 3.9 37 60-96 178-215 (215)
58 5UDO_D A118 serine integrase; 25.7 4.3E+02 0.0049 19.5 5.5 37 61-97 224-260 (328)
59 PF06570.15 ; DUF1129 ; Protein 25.5 3.9E+02 0.0046 19.0 5.4 39 60-98 3-41 (201)
60 5CW4_B Protein FAM175B; Metal 24.5 3.5E+02 0.004 21.3 4.6 42 57-98 226-267 (289)
61 2CAZ_B VACUOLAR PROTEIN SORTIN 24.4 4.3E+02 0.0049 19.4 4.7 37 63-99 54-90 (155)
62 PF08855.14 ; DUF1825 ; Domain 24.1 3.6E+02 0.0041 18.0 5.4 36 64-99 68-103 (103)
63 PF11460.12 ; DUF3007 ; Protein 22.9 3.9E+02 0.0045 18.0 4.2 33 51-91 60-95 (96)
64 3J79_R 60S ribosomal protein u 22.5 5.9E+02 0.0068 20.3 5.6 65 28-98 170-249 (294)
65 6KSR_A Phosphotransferase; Hex 22.5 2.7E+02 0.0032 22.2 3.8 37 60-99 2-38 (467)
66 PF18175.5 ; HU-CCDC81_bac_2 ; 22.5 2.5E+02 0.0029 15.7 3.8 30 70-99 4-33 (69)
67 2F6M_D Vacuolar protein sortin 22.3 4E+02 0.0047 18.0 5.1 35 63-97 37-71 (109)
68 5MK9_A MalE1; carbohydrate bin 22.3 5.2E+02 0.006 19.3 5.1 38 61-98 341-378 (379)
69 5UOI_A HHH_rd1_0142; de novo d 22.2 2.6E+02 0.003 15.7 3.4 25 66-90 2-27 (43)
70 PF09650.14 ; PHA_gran_rgn ; Pu 22.1 2.5E+02 0.0029 17.5 3.0 22 78-99 8-29 (87)
71 8BTR_LF Ribosomal protein L5; 21.7 6.6E+02 0.0076 20.3 6.9 65 28-98 176-256 (297)
72 6S7O_E Dolichyl-diphosphooligo 21.5 5.5E+02 0.0064 22.2 5.6 37 61-97 559-595 (607)
73 6QLF_Y Inner kinetochore subun 21.4 6.4E+02 0.0074 20.0 5.6 40 57-97 195-238 (238)
74 1SF9_A yfhH hypothetical prote 21.3 3.4E+02 0.0039 19.4 3.6 27 70-98 25-51 (128)
75 6RM3_LD0 uL18; Microsporidia, 21.2 5.4E+02 0.0063 20.5 5.1 65 28-98 173-254 (295)
76 PF06738.16 ; ThrE ; Putative t 21.1 4.3E+02 0.0049 19.6 4.4 29 65-93 72-100 (238)
77 PF11527.12 ; ARL2_Bind_BART ; 21.0 3.8E+02 0.0044 17.2 4.3 30 56-88 47-76 (118)
78 3OIQ_B DNA polymerase alpha ca 20.9 2.1E+02 0.0025 15.5 2.0 15 58-72 11-25 (36)
79 PF15207.10 ; TMEM240 ; TMEM240 20.7 56 0.00064 24.5 -0.2 10 1-10 56-65 (179)
80 1YWW_A Hypothetical protein PA 20.7 3.5E+02 0.0041 16.7 3.6 39 57-95 46-85 (85)
81 4UA8_A Carbohydrate ABC transp 20.3 3E+02 0.0035 20.7 3.5 37 63-99 360-399 (400)
82 6LMJ_A A104R; Complex, dsDNA, 20.2 4E+02 0.0046 17.1 4.0 33 64-99 18-50 (110)
No 1
>PF14412.10 ; AHH ; A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=99.54 E-value=1.2e-14 Score=97.13 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=68.4 Template_Neff=9.200
Q ss_pred CCccccCChhhhcCH-------------------HHHhcCCcCCCccceeecCCCCCC--CCCCCcccCCCcCCCChHHH
Q FD01848239_023 1 YNRHHIIPYEFRNHP-------------------FLQRTNIDINGATNMTYLPVADGI--HPTKVIHADFKLDGLPHSDY 59 (99)
Q Consensus 1 ~qaHHIIP~~~~~~~-------------------~l~~~g~din~~~Ngi~LP~~~~~--~~~~~~H~G~~~~~~~H~~Y 59 (99)
+|+|||||.+..... ++...|||+| .|+++||..... ..+.+.|.| .|+.|
T Consensus 17 ~~~HHiip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~N~i~LP~~~~~~~~~~~~~H~g------~H~~Y 88 (139)
T Q2SED4_HAHCH/1 17 NQVHHIVNISSVRNGIEEIAKDLPDLRVLIVNGLLDEKYNINYK--DNSLILPTQRSASAKTGLPSHYG------SHPSY 88 (139)
T ss_pred cCceeeecHHHHHhchhhhhcCCchHhHHHHcchHHHhcCCCCC--CCeeecCCchHHHhhhCCCcccC------CChHH
Confidence 589999999873322 7788889999 999999986554 356789999 99999
Q ss_pred HHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 60 NKKM----GGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 60 ~~~V----~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
++.| .+.|+.+.........+..++...+.++..+|+..
T Consensus 89 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 131 (139)
T Q2SED4_HAHCH/1 89 SKDILQHVKQALQPYKKIANEMKKNKPHSKPDPVELKKKLEDA 131 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHchhcCcccCCCHHHHHHHHHHH
Confidence 9999 99999988776554455555666666665555543
No 2
>PF09533.14 ; DUF2380 ; Predicted lipoprotein of unknown function (DUF2380)
Probab=96.56 E-value=0.009 Score=43.69 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCccccCChhhhcCHHHHhcCCcCCCccceeecCCCCCCCCCCCcccCCCcCCCChHH-----HHHHHHHHHHHHHHHHH
Q FD01848239_023 1 YNRHHIIPYEFRNHPFLQRTNIDINGATNMTYLPVADGIHPTKVIHADFKLDGLPHSD-----YNKKMGGILDALEERAI 75 (99)
Q Consensus 1 ~qaHHIIP~~~~~~~~l~~~g~din~~~Ngi~LP~~~~~~~~~~~H~G~~~~~~~H~~-----Y~~~V~~~Ld~i~~~~~ 75 (99)
++.|||+|++..-...|+..|+||+. -.+.+|.. .|.. .|.. ||+.-++-+++-..
T Consensus 100 ~e~HHifPQ~~~~~~~F~~~GInIhd--ytv~i~~~--------~H~~------IH~G~~gg~WN~~W~~fi~~n~~--- 160 (189)
T E3FZI5_STIAD/5 100 LIKHHLFPQEARLATWFRANGINIHE--WTMLVPEQ--------VHLR------VHRGARGGLWNEAWRQYYEANSA--- 160 (189)
T ss_pred cccccccchHHHHHHHHHHCCCcccc--eeeecCHH--------Hhhh------hccccccccHHHHHHHHHHHcCC---
Q ss_pred hcCC-CHHHHHHHHHHHHHH
Q FD01848239_023 76 LDGW-DNNRATKEALNLQSD 94 (99)
Q Consensus 76 ~~~~-~~~~~~~~i~~l~~~ 94 (99)
+. |++++.+...+|+.+
T Consensus 161 --~a~T~~eI~~~a~~L~~r 178 (189)
T E3FZI5_STIAD/5 161 --RPVSREELLSKAFELALR 178 (189)
T ss_pred --CCCCHHHHHHHHHHHHHH
No 3
>PF05120.16 ; GvpG ; Gas vesicle protein G
Probab=83.22 E-value=13 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
..|+++|.++...+..+.+|.++..+.-..|...++.
T Consensus 31 ~~i~~~L~eL~~~~e~GeIseeEy~~~e~~Ll~rl~~ 67 (72)
T Q2JJS5_SYNJB/2 31 ENLQKELTALQIQLDLGEIDEETYARREEEILLALEA 67 (72)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
No 4
>PF21648.1 ; M1E1E6-like ; Integron cassette protein
Probab=81.65 E-value=8.7 Score=25.74 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q FD01848239_023 59 YNKKMGGILDALEERAILDGWDNNRATKEALNLQSDT 95 (99)
Q Consensus 59 Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~l 95 (99)
|-..+...|..|.+..+.+.++.+++.+++++|.+-+
T Consensus 64 yP~~l~~~le~lW~~~~~~~l~~ee~Q~~l~ela~WI 100 (104)
T A0A091AID3_9PR 64 PPAILNDLLEHVWEAWRNGYLKDESVDQELHAVEEWL 100 (104)
T ss_pred CchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
No 5
>1GZS_D SOPE; TOXIN/CELL CYCLE, COMPLEX (TOXIN-CELL CYCLE PROTEIN), SOPE, CDC42, SALMONELLA TYPHIMURIUM, GEF, TOXIN, GTP- BINDING, LIPOPROTEIN, PRENYLATION; HET: SO4; 2.3A {HOMO SAPIENS} SCOP: a.168.1.1
Probab=80.37 E-value=31 Score=25.37 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHhcC-----CcCCCcc-ceeecCCCCCC-----CCCCCcccCCCcCCCCh---HHHHHHHHHHHHHHHHHHHhc--C
Q FD01848239_023 15 PFLQRTN-----IDINGAT-NMTYLPVADGI-----HPTKVIHADFKLDGLPH---SDYNKKMGGILDALEERAILD--G 78 (99)
Q Consensus 15 ~~l~~~g-----~din~~~-Ngi~LP~~~~~-----~~~~~~H~G~~~~~~~H---~~Y~~~V~~~Ld~i~~~~~~~--~ 78 (99)
++|+++| +.+.+.. |||+.|...+. ..--+.+..|+....++ ..+..++++.+-......-.. .
T Consensus 64 ~yl~eiG~~A~~~GL~g~~Kngvf~P~GaGanpf~t~v~ss~~~k~p~~~~n~~q~~~~~~~Ae~~i~~~V~~l~~e~g~ 143 (165)
T 1GZS_D 64 PFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAM 143 (165)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTEEEETTCSCCTTHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeeCCCCCCCCCccHHHccHHHhhCHHHhcCHHhHHHHHHHHHHHHHHHHHHHhhhcCC
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 79 WDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 79 ~~~~~~~~~i~~l~~~lR~~ 98 (99)
.++.+....+..+.+.....
T Consensus 144 ~~P~~F~~~L~~Ia~ky~~~ 163 (165)
T 1GZS_D 144 PTPQQFQLILENIANKYIQN 163 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhc
No 6
>3FY6_D Integron cassette protein; Novel, Integron cassette protein, Vibrio cholerae, Oyster pond, Woodshole, USA, UNKNOWN FUNCTION, Structural Genomics, PSI-2, Protein; HET: MSE; 2.1A {Vibrio cholerae}
Probab=75.92 E-value=15 Score=25.53 Aligned_cols=37 Identities=11% Similarity=-0.066 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q FD01848239_023 59 YNKKMGGILDALEERAILDGWDNNRATKEALNLQSDT 95 (99)
Q Consensus 59 Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~l 95 (99)
|-..+...|..|.+..+.+.++.+++.+++++|.+-+
T Consensus 73 yP~~l~~~le~lW~~~~~~~l~~ee~Q~~L~ela~WI 109 (126)
T 3FY6_D 73 PPEITQNLFQHAWLEWRKGALDNDEVTRELELVAQWV 109 (126)
T ss_dssp CBTTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
No 7
>PF07487.17 ; SopE_GEF ; SopE GEF domain
Probab=74.19 E-value=41 Score=23.79 Aligned_cols=77 Identities=6% Similarity=-0.027 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHhcC-------CcCCCccceeecCCCCCC-----------CCCCCcccCCCcCCCCh---HHHHHHHHHHHHHHHHH
Q FD01848239_023 15 PFLQRTN-------IDINGATNMTYLPVADGI-----------HPTKVIHADFKLDGLPH---SDYNKKMGGILDALEER 73 (99)
Q Consensus 15 ~~l~~~g-------~din~~~Ngi~LP~~~~~-----------~~~~~~H~G~~~~~~~H---~~Y~~~V~~~Ld~i~~~ 73 (99)
++|+++| .+... .|||+.|+..+. ...++.+.. .+ ..+..++++++-.....
T Consensus 35 ~yl~eiG~aA~~~GL~g~~-K~gvf~P~GaGAnpf~t~v~~~~~~~~~~~~~------~~~~~~~~~~~a~~~i~~~v~~ 107 (134)
T Q7P1B7_CHRVO/1 35 GYLRELGEAARAAGLPGEN-KHGVFIPSGDGASPFVNYLLIPVQKEFGHRLR------NESQQRLFRDFARQLSMELVAP 107 (134)
T ss_pred HHHHHHHHHHHHcCCCCcc-cCCeeCCCCCCCCchhHHHHHHHHHHhhHhhc------CHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHhc--CCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 74 AILD--GWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 74 ~~~~--~~~~~~~~~~i~~l~~~lR~~ 98 (99)
.-.. ..++.+....++.+.+.-+..
T Consensus 108 ~~~e~~~~~p~~F~~~L~~i~~~~~~~ 134 (134)
T Q7P1B7_CHRVO/1 108 HAAERGWEPPAAFAARLEAVGRPWLAQ 134 (134)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhHHHhC
No 8
>PF15635.10 ; Tox-GHH2 ; GHH signature containing HNH/Endo VII superfamily nuclease toxin 2
Probab=72.67 E-value=3 Score=27.09 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CccccCChhh
Q FD01848239_023 2 NRHHIIPYEF 11 (99)
Q Consensus 2 qaHHIIP~~~ 11 (99)
+.|||||...
T Consensus 2 t~hHivpd~~ 11 (105)
T G4T2Y2_META2/2 2 TPDHLIDVKS 11 (105)
T ss_pred CCCceeeHHH
No 9
>PF13391.10 ; HNH_2 ; HNH endonuclease
Probab=69.16 E-value=2.7 Score=22.20 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCccccCChhh--hcCHHHHhcC-CcCCCccceeecCCC
Q FD01848239_023 1 YNRHHIIPYEF--RNHPFLQRTN-IDINGATNMTYLPVA 36 (99)
Q Consensus 1 ~qaHHIIP~~~--~~~~~l~~~g-~din~~~Ngi~LP~~ 36 (99)
.++.||+|... ...+.....+ .++++..|++.|...
T Consensus 11 ~~~ahi~~~~~~~~~~~~~~~~~~~~~~~~~N~i~l~~~ 49 (62)
T Q5KQA0_CRYNJ/1 11 CTASHIVPASRPDIYDCFYGDGGGLPMFRPSAGLLLRDD 49 (62)
T ss_pred eeEEEEecccchhhhhhhcCCCCCCCCCChHHhEEECch
No 10
>2JOK_A Putative G-nucleotide exchange factor; Guanine nucleotide exchange factor, Burkholderia pseudomallei, Type III secretion, SopE, SopE2, CELL INVASION, SIGNALING PROTEIN; NMR {Burkholderia pseudomallei} SCOP: a.168.1.1
Probab=66.27 E-value=67 Score=24.19 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred HHHHhcC-----CcCCCcc-ceeecCCCCCC-----------CCCCCcccCCCcCCCCh---HHHHHHHHHHHHHHHHHH
Q FD01848239_023 15 PFLQRTN-----IDINGAT-NMTYLPVADGI-----------HPTKVIHADFKLDGLPH---SDYNKKMGGILDALEERA 74 (99)
Q Consensus 15 ~~l~~~g-----~din~~~-Ngi~LP~~~~~-----------~~~~~~H~G~~~~~~~H---~~Y~~~V~~~Ld~i~~~~ 74 (99)
++|+++| +.+.+.. |||+.|...+. ...++.+.. ++ ..+..++++++-......
T Consensus 69 ~yl~eIG~aA~~aGL~g~~Kngvf~P~GaGAnpf~t~v~~~~~~k~p~~~~------n~~q~~~~~~yA~q~i~~~V~~l 142 (186)
T 2JOK_A 69 AFIEALGDAARATGLPGADKQGVFTPSGAGTNPLYTEIRLRADTLMGAELA------ARPEYRELQPYARQQAIDLVANA 142 (186)
T ss_dssp HHHHHHHHHHHHHTCSCEEETTEEECCSCCCCSSHHHHHHHHHHHCCSHHH------HSGGGTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCcccCCccCCCCCCCCCchHHHhHHHHHHchhhhh------cchhHHhhHHHHHHHHHHHHHHh
Q ss_pred Hhc--CCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 75 ILD--GWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 75 ~~~--~~~~~~~~~~i~~l~~~lR~~ 98 (99)
-.. ..++......+..|.+..+..
T Consensus 143 ~~e~~~~~p~~Fr~~L~~Ia~ky~~~ 168 (186)
T 2JOK_A 143 LPAERSNTLVEFRQTVQTLEATYRRA 168 (186)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcCCCCHHHHHHHHHHHHHHHHHh
No 11
>6AZ3_O 60S ribosomal protein L5, putative; Leishmania, ribosome, aminoglycoside, paromomycin, RIBOSOME-ANTIBIOTIC complex; HET: OMU, OMC, PAR, OMG, A2M, MG; 2.5A {Leishmania donovani}
Probab=63.30 E-value=90 Score=24.93 Aligned_cols=65 Identities=11% Similarity=-0.031 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred cceeecCCCCCCCCCCC-------------cccCCCcCCCCh-HHHHHHHHHH-------HHHHHHHHHhcCCCHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV-------------IHADFKLDGLPH-SDYNKKMGGI-------LDALEERAILDGWDNNRATK 86 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~-------------~H~G~~~~~~~H-~~Y~~~V~~~-------Ld~i~~~~~~~~~~~~~~~~ 86 (99)
++||.+|.+...-+++. .=.| .| ..|...+.+. ...-...+...+++++.+.+
T Consensus 174 d~Gl~ip~~~~~~p~~~~e~~~~~~e~~r~rI~G------~hi~~y~~~l~~~~~~~~e~~~~~fs~~~~~~~~~~~~~~ 247 (305)
T 6AZ3_O 174 DGGMAVPHRPNRFPGYNKEKSSLDAKVHRDRIFG------KHVAEYLKQVKEEASSNPDEKCVQFSRYMAAKVLPESIEG 247 (305)
T ss_dssp TTTCBCCCCTTSSTTBCTTTCCBCHHHHHHHHTT------HHHHHHHHHHHHHTTSCC----CTTHHHHTTTCCTTTTHH
T ss_pred hcCccccCCCCcCCCCCcCCCcCChHHHHHHHcc------ccHHHHHHHHHhhhcCChhHhHHHHHHHHhcCCChHhHHH
Q ss_pred HHHHHHHHHHhc
Q FD01848239_023 87 EALNLQSDTRKN 98 (99)
Q Consensus 87 ~i~~l~~~lR~~ 98 (99)
.+.+.-..+|+.
T Consensus 248 ~~~~~~~~I~~~ 259 (305)
T 6AZ3_O 248 MYKKAHAAIRAD 259 (305)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhC
No 12
>5T5H_u 60S ribosomal protein L5; Trypanosoma cruzi, ribosomal subunit, assmebly, multiply fragmented rRNAs, 2.5 angstrom cryo-EM structure, RIBOSOME; HET: 5MC, OMU, OMC, OMG, A2M, MG, 7MG; 2.54A {Trypanosoma cruzi}
Probab=62.91 E-value=67 Score=24.87 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cceeecCCCCCCCCCCC-------------cccCCCcCCCCh-HHHHHHHHHH-------HHHHHHHHHhcCCCHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV-------------IHADFKLDGLPH-SDYNKKMGGI-------LDALEERAILDGWDNNRATK 86 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~-------------~H~G~~~~~~~H-~~Y~~~V~~~-------Ld~i~~~~~~~~~~~~~~~~ 86 (99)
++|+.+|.+...-++.. .=.| .| .+|...+.+. .......+...+++++.+.+
T Consensus 169 d~Gl~ip~~~~~~p~~~~e~~~~~~~~~r~rI~g------~hi~~y~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 242 (254)
T 5T5H_u 169 DGGLAVPHRPNRFPGYDKEKDSLNAKAHRDRILG------LHVAEYLKQVREEASSNPEESTCQFSKYIKDKVVPNELEG 242 (254)
T ss_pred hCCccccCCCCcCCCCCccccccChHHHHHHHHH------HHHHHHHHHHHHhhcCChHHhHHHHHHHHhcCCCHHHHHH
Q ss_pred HHHHHHHHHHhc
Q FD01848239_023 87 EALNLQSDTRKN 98 (99)
Q Consensus 87 ~i~~l~~~lR~~ 98 (99)
.+.+.-..+|+.
T Consensus 243 ~~~~~~~~I~~~ 254 (254)
T 5T5H_u 243 MYKKAHAAIRAD 254 (254)
T ss_pred HHHHHHHHHhcC
No 13
>6TH6_BQ 50S ribosomal protein L18; T. kodakarensis, ac4C, Ribosome, cryo-EM; HET: ZN, 5MU, 6MZ, 5MC, 4AC, OMU, 4SU, MA6, OMC, OMG, LHH, A2M, LV2; 2.55A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
Probab=62.38 E-value=66 Score=23.77 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred cceeecCCCCCCCCCCCcccCCCcCCCCh-HHHHHHHHH-H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 28 TNMTYLPVADGIHPTKVIHADFKLDGLPH-SDYNKKMGG-I---LDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~~H~G~~~~~~~H-~~Y~~~V~~-~---Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
++||.+|.....-+....-.| .| .+|...+.+ . ...-...+...+++++.+.+.+.+.-..+++.
T Consensus 126 d~Gl~i~~~~~~~p~~~ri~G------~hi~~y~~~l~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~I~~~ 195 (201)
T 6TH6_BQ 126 DAGLNVPHSEEIYPEDYRING------EHIANYAKALKEEDEALYRKQFSGYLVKGLEPEKLPEHFEEVKAKIIEK 195 (201)
T ss_pred hcCccCCCCCCcChhhhhcch------hhHHHHHHHchhhCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
No 14
>PF05766.16 ; NinG ; Bacteriophage Lambda NinG protein
Probab=57.47 E-value=28 Score=24.80 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCccccCChhh-hcCHHHHhcCCcCCCccceeecCCCCCCCCCCCcccCCCcCCCCh---HHHHHHHHHHH-----HHHH
Q FD01848239_023 1 YNRHHIIPYEF-RNHPFLQRTNIDINGATNMTYLPVADGIHPTKVIHADFKLDGLPH---SDYNKKMGGIL-----DALE 71 (99)
Q Consensus 1 ~qaHHIIP~~~-~~~~~l~~~g~din~~~Ngi~LP~~~~~~~~~~~H~G~~~~~~~H---~~Y~~~V~~~L-----d~i~ 71 (99)
+++|||+|... . -.-.+..|++.|=.. .|.. .| ..|...+...+ +.|.
T Consensus 109 ~~~~Hi~~~~~~~---------~~~~~~~N~~~lC~~--------Ch~~------~~~~~~~~~~~l~~~~g~~~~~~l~ 165 (197)
T A0A2U2GVX8_YER 109 YHAGHYLTVGANP---------ELRFNEDNCHRQCAP--------CNNH------LSGNIEKYTPNLIAKIGQVRFDILM 165 (197)
T ss_pred ceeccccCcCCCh---------hhcCChhhcHHhCHH--------HHhh------ccCCHHhhHHHHHHHHCHHHHHHHh
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 72 ERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
.......++.+++.+.+..+...+++
T Consensus 166 ~~~~~~k~~~~~~~~~~~~~~~~~~~ 191 (197)
T A0A2U2GVX8_YER 166 GPHEMTNYRRDDYIRIRDEYRAKTKA 191 (197)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHHHH
No 15
>7P9K_B DUF262 domain-containing protein; Restriction endonuclease, Phage defence protein, DNA BINDING PROTEIN; HET: SO4, GOL; 2.12A {Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)}
Probab=56.10 E-value=13 Score=30.41 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCccccCChhhhcCHHHHhcCCcC----------CCccceeecCCCCCC
Q FD01848239_023 1 YNRHHIIPYEFRNHPFLQRTNIDI----------NGATNMTYLPVADGI 39 (99)
Q Consensus 1 ~qaHHIIP~~~~~~~~l~~~g~di----------n~~~Ngi~LP~~~~~ 39 (99)
+..|||+|++......+...++.- |.-.|++.|+.....
T Consensus 471 ~~ieHI~P~~~~~~~~~~~~~~~~~~~~~~~~~~n~iGNl~lL~~~~N~ 519 (587)
T 7P9K_B 471 FHVDHIYPKGLFTRNKLAKVGVPAEQLDELIEASNKLPNLQLLEGTINN 519 (587)
T ss_dssp EEEEESSCGGGCCHHHHHHHTCCTTSHHHHHHHHTBGGGEEEEESSCCT
T ss_pred CccccccchhhccchhHHhcCCCHHHHHHHHHHhhcchhHHccCCcccc
No 16
>PF19551.3 ; DUF6074 ; Family of unknown function (DUF6074)
Probab=51.50 E-value=92 Score=19.49 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
..+....++.+.......+++++.+..++..+....+.+
T Consensus 33 ~~~w~~~~~~l~~~l~~~G~~~~~i~~ev~~f~~aV~~e 71 (81)
T A0A0K2DBD8_9HY 33 EAKWRGLLKRHRRLRRELGMAEEAIDADLLAFAAAVRNL 71 (81)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
No 17
>8HL4_L18P 50S ribosomal protein L18; Sulfolobus acidocaldarius ribosome small subunit, RIBOSOME; HET: GNP, UNK;{Sulfolobus acidocaldarius DSM 639}
Probab=50.76 E-value=1.5e+02 Score=21.71 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred cceeecCCCCCCCCCCCcccCCCcCCCCh-HHHHHHHHH---H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 28 TNMTYLPVADGIHPTKVIHADFKLDGLPH-SDYNKKMGG---I-LDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~~H~G~~~~~~~H-~~Y~~~V~~---~-Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
+.|+.+|.+. .-+....=.| .| ..|...+.+ . ...-...+...+++++.+.+.+.+.-..+++.
T Consensus 125 d~Gl~i~~~~-~~p~~~ri~g------~hi~~y~~~l~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~ 193 (193)
T 8HL4_L18P 125 DAGLKVPVGD-LGKLKDRVNG------SHISAYAQKLKNENQELYNKLFSSYIQRGLDPVLLPQHFEEVLNKIKEN 193 (193)
T ss_pred hcCccccccc-cCCchHhccC------ccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcC
No 18
>6XOR_A Protein swallow; coiled coil, self-association domain, RNA BINDING PROTEIN; NMR {Drosophila melanogaster}
Probab=48.03 E-value=1.1e+02 Score=19.53 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 58 DYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 58 ~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
.|++++..+|++-....-.-.-+-+.++.++.+..+.||.
T Consensus 28 ~yndYLQ~kLdeK~~e~~~lr~Nfe~lR~eLs~ck~KLkr 67 (71)
T 6XOR_A 28 GFNEYVQERLDRITDDFVKMKDNFETLRTELSEAQQKLRR 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 19
>PF11867.12 ; T1RH-like_C ; Type I restriction enzyme HindI endonuclease subunit-like, C-terminal
Probab=47.91 E-value=1.3e+02 Score=23.08 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
|.+.....++|.++.+.+..+..+..+..+++..+.+++...
T Consensus 198 p~~y~~~serl~~li~~~~~~~~~~~e~l~el~~l~~~~~~~ 239 (334)
T W8RWQ4_9RHOB/6 198 VVQNQKFSERLTNAIARYHNRSVDALQVIQELIGMAKDLSAE 239 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhC
No 20
>8A3D_G 60S ribosomal protein L5; Ribosome, human, TRANSLATION, rna modifications, water, magnesium, potassium, homoharringtonine; HET: K, HMT, 1MA, 6MZ, EPE, 5MC, OMU, OMC, PSU, OMG, SPM, A2M, UR3, MG; 1.67A {Homo sapiens}
Probab=47.06 E-value=2.2e+02 Score=22.51 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cceeecCCCCCCCCCC-------------CcccCCCcCCCCh-HHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTK-------------VIHADFKLDGLPH-SDYNKKMG----GILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~-------------~~H~G~~~~~~~H-~~Y~~~V~----~~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
.+||.+|.+...-++. ..=.| .| ..|...+. +.-......+...+++++.+.+.+.
T Consensus 168 d~Gl~ip~~~~~~p~~~~e~~~y~~~~~r~ri~g------~hi~~y~~~l~~~d~~~~~~~fs~~~~~~~~~~~~~~~f~ 241 (297)
T 8A3D_G 168 DGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG------QNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYK 241 (297)
T ss_dssp HTTCBCCCCSTTSTTEETTTTEECHHHHHHHHTT------HHHHHHHHHHHHHCHHHHHHHTHHHHHTTCCGGGHHHHHH
T ss_pred cCCCcCCCCCccCCCCCCCCcccCHHHHHHHhhc------chHHHHHHHhhhcCHHHHHHHHHHHHhcCCChHHHHHHHH
Q ss_pred HHHHHHHhc
Q FD01848239_023 90 NLQSDTRKN 98 (99)
Q Consensus 90 ~l~~~lR~~ 98 (99)
++-..++..
T Consensus 242 ~~~~~I~~~ 250 (297)
T 8A3D_G 242 KAHAAIREN 250 (297)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
No 21
>4V8P_BM 60S RIBOSOMAL PROTEIN L5; RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN; HET: MG, ZN; 3.52A {TETRAHYMENA THERMOPHILA}
Probab=46.10 E-value=1.6e+02 Score=23.50 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cceeecCCCCCCCCCCC------------------cccCCCcCCCCh-HHHHHHHHHH----HHHHHHHHHh--cCCCHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV------------------IHADFKLDGLPH-SDYNKKMGGI----LDALEERAIL--DGWDNN 82 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~------------------~H~G~~~~~~~H-~~Y~~~V~~~----Ld~i~~~~~~--~~~~~~ 82 (99)
++|+.+|.+...-++.. .=.| .| .+|...+.+. ...-...+.. .+++++
T Consensus 168 d~Gl~ip~~~~~~p~~~~~~~~~es~~y~~e~~r~rI~g------~hi~~y~~~l~~~~~~~~~~~fs~~~~~~~~~~~~ 241 (301)
T 4V8P_BM 168 DGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFG------KHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVD 241 (301)
T ss_pred cCCeeccCCCccCCCcccCCCCCCCccCChHHHHHHHhc------cHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCch
Q ss_pred HHHHHHHHHHHHHHhc
Q FD01848239_023 83 RATKEALNLQSDTRKN 98 (99)
Q Consensus 83 ~~~~~i~~l~~~lR~~ 98 (99)
.+.+.+.+.-..+|+.
T Consensus 242 ~~~~~~~~~~~~i~~~ 257 (301)
T 4V8P_BM 242 SVEKLFTKVHAEIRKN 257 (301)
T ss_pred hHHHHHHHHHHHHHhC
No 22
>6ZU5_LD0 uL18; Microsporidia, Pathogen, Ribosome, Hibernation, Genome Compaction; HET: AMP, MG; 2.9A {Paranosema locustae}
Probab=44.99 E-value=2.2e+02 Score=22.02 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred cceeecCCCCCCCCCCC------------cccCCCcCCCCh-HHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV------------IHADFKLDGLPH-SDYNKKMG----GILDALEERAILDGWDNNRATKEALN 90 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~------------~H~G~~~~~~~H-~~Y~~~V~----~~Ld~i~~~~~~~~~~~~~~~~~i~~ 90 (99)
+.|+.+|.+...-++.. .-.| .| .+|...+. +.-..-...+...+++++.+.+.+.+
T Consensus 144 d~Gl~ip~~~~~~p~~~e~~~~~~~~~r~ri~g------~hi~~y~~~l~~~d~~~~~~~fs~~~~~~~~~~~~~~~~~~ 217 (266)
T 6ZU5_LD0 144 DGGLVMPHSLKRVPGYVSEEEFDSEVFRNKLFG------KILAGYMKEMMENYPEKYKKTFQEYIKKGINPDDLENIYEN 217 (266)
T ss_pred hCCccccCCCcccCCCCCCcccChHHHHHHHcc------chHHHHHHHHHhhCHHHHHHHHHHHHHcCCChhhHHHHHHH
Q ss_pred HHHHHHhc
Q FD01848239_023 91 LQSDTRKN 98 (99)
Q Consensus 91 l~~~lR~~ 98 (99)
.-..++..
T Consensus 218 ~~~~i~~~ 225 (266)
T 6ZU5_LD0 218 AFKKIRED 225 (266)
T ss_pred HHHHHHhC
No 23
>3BHP_B UPF0291 protein ynzC; NESG, SR384, O31818, UPF0291 protein ynzC, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; HET: MSE; 2.01A {Bacillus subtilis} SCOP: a.2.21.1
Probab=44.43 E-value=1.2e+02 Score=18.63 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHH--HHHH-HHHHHHhcC
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATK--EALN-LQSDTRKNL 99 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~--~i~~-l~~~lR~~L 99 (99)
+.+.++++.+....+..++|+++..+ .+.+ .+..+|..+
T Consensus 4 ~~~i~RINeLakk~K~~~LT~eE~~Eq~~LRkeYl~~~R~~~ 45 (60)
T 3BHP_B 4 NAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSM 45 (60)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
No 24
>1VQ8_N 50S ribosomal protein L18P; ribosome 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION, RIBOSOME; HET: SPS, 1MA, NA, SR, UR3, MG, OMU, OMG, CL, PSU; 2.2A {Haloarcula marismortui} SCOP: c.55.4.1
Probab=43.97 E-value=1.2e+02 Score=22.30 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cceeecCCCCCCCCCCCcccCCCcCCCCh-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 28 TNMTYLPVADGIHPTKVIHADFKLDGLPH-SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~~H~G~~~~~~~H-~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
++|+.+|.+...-+....=.| .| .+|...+... .+ ..+++++++.+.++++-..+++.
T Consensus 125 d~Gl~i~~~~~~~p~~~ri~g------~hi~~y~~~l~~~------~f-~~~~~~~~~~~~~~~~~~~i~~~ 183 (187)
T 1VQ8_N 125 DAGLDIPHNDDVLADWQRTRG------AHIAEYDEQLEEP------LY-SGDFDAADLPEHFDELRETLLDG 183 (187)
T ss_dssp HTTCBCCCCGGGSCCHHHHHT------HHHHHHHHSCSSC------SS-SSCSCSSCCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCCCcccCCcccccc------chHHHHHHhcCch------Hh-cCCCCHHHHHHHHHHHHHHHHhc
No 25
>6ZJ3_Ld Ribosomal protein uL18; Single particle cryo-EM RNA modifications, RIBOSOME; HET: 1MA, 6MZ, MIA, B8N, 5MC, OMU, B8H, MA6, OMC, PSU, OMG, JMH, A2M, UR3, JMC, 7MG; 3.15A {Euglena gracilis}
Probab=43.35 E-value=2.4e+02 Score=21.93 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred cceeecCCCCCCCCCCC-------------cccCCCcCCCCh-HHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV-------------IHADFKLDGLPH-SDYNKKMG----GILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~-------------~H~G~~~~~~~H-~~Y~~~V~----~~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
++|+.+|.+...-++.. .-.| .| .+|...+. +.-..-...+...+++++.+.+...
T Consensus 166 d~Gl~ip~~~~~~p~~~~e~~~~~~~~~r~rI~g------~hi~~y~~~l~~~d~~~y~~~fs~~~~~~~~~~~~~~~~~ 239 (260)
T 6ZJ3_Ld 166 DGGVNVPHSMKRFPGYNRDKGEMDSETLRERIFA------GHVAEYQKMLIREEPEKYQEVYSQYIAKGVKPGEVEDMWA 239 (260)
T ss_pred hCCcccccccccCCCCCCCCCCCCHHHHHHHHHH------hhHHHHHHHHhhcCHHHHHHHHHHHHHcCCChhhHHHHHH
Q ss_pred HHHHHHHhc
Q FD01848239_023 90 NLQSDTRKN 98 (99)
Q Consensus 90 ~l~~~lR~~ 98 (99)
+.-..+|+.
T Consensus 240 ~~~~~I~~~ 248 (260)
T 6ZJ3_Ld 240 NCHASIRAN 248 (260)
T ss_pred HHHHHHHhC
No 26
>2LSE_A Four Helix Bundle Protein; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, DE NOVO PROTEIN; NMR {artificial gene}
Probab=42.90 E-value=1.5e+02 Score=19.48 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+.+-++|..|.+..- +-.+++++++|+++..+.+..|
T Consensus 6 kklleklekildevt--dgapdearerieklakdvkdel 42 (101)
T 2LSE_A 6 KKLLEKLEKILDEVT--DGAPDEARERIEKLAKDVKDEL 42 (101)
T ss_dssp HHHHHHHHHHHHHHH--HTSCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHH
No 27
>7YH8_C L-19437; heterochiral, miniprotein, alpha helix, D-protein, D-peptide, mirror-image, de novo, designer, DE NOVO PROTEIN; HET: DLY, DLE, DHI, DAS, DPN, DTR, DTY, DAR, DIL, DAL, DGL, DTH; 2.2A {synthetic construct}
Probab=39.77 E-value=1.4e+02 Score=18.05 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
|......++.|+...+... +++...+.+++..+|.+|
T Consensus 25 pelariarevlerarklgn------eeaarfvlelierlrrel 61 (62)
T 7YH8_C 25 PELARIAREVLERARKLGN------EEAARFVLELIERLRREL 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHh
No 28
>PF15188.10 ; CCDC-167 ; Coiled-coil domain-containing protein 167
Probab=37.92 E-value=1.7e+02 Score=18.73 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
.....+|+.+..+.....++++ -++.+++-...+++.+
T Consensus 14 ~~~~~rle~le~~Lr~~~Ls~e-~R~~Le~E~~~lk~~l 51 (84)
T G3WU53_SARHA/3 14 SLCRRNLEELNIRLRREELSSE-ARRALEKEKNNLTSKA 51 (84)
T ss_pred HHHHHHHHHHHHHHhcccCCHH-HHHHHHHHHHHHHHHH
No 29
>PF14357.10 ; DUF4404 ; Domain of unknown function (DUF4404)
Probab=37.80 E-value=1.4e+02 Score=18.83 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 63 MGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 63 V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+++.|.++........--+++.++.+..+.+++...|
T Consensus 1 l~~~L~~L~~eL~~~~~~d~~~r~~L~~l~~~i~~~l 37 (85)
T D2R1W8_PIRSD/5 1 LKATVAELEAELSQVDSLDDETRALLQSAADDISRAL 37 (85)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
No 30
>3FXD_A Protein IcmQ; 4 helix bundle, helix-turn-helix, UNKNOWN FUNCTION; 2.1A {Legionella pneumophila}
Probab=37.68 E-value=1.5e+02 Score=18.00 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
..+.+.....|..+......+.|+..-..+.+.+=+.++|..+
T Consensus 4 ~~~~e~~~~il~aLD~~i~~GpWe~S~FLr~i~K~L~~ird~~ 46 (57)
T 3FXD_A 4 QLSDEQKETILKALNDAIEKGPWDKSNFLRVIGKKLIAIRDRF 46 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHH
No 31
>7R81_G1 60S ribosomal protein L5; Protein Synthesis Inhibitor, Cytosolic Ribosome, Polysomal Ribosome, Peptidyl Transferase Center, TRANSLATION; HET: SPD, 3HE, MG; 2.7A {Neurospora crassa}
Probab=36.44 E-value=2.1e+02 Score=22.87 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred cceeecCCCCCCCCCC-------------CcccCCCcCCCCh-HHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTK-------------VIHADFKLDGLPH-SDYNKKMGG----ILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~-------------~~H~G~~~~~~~H-~~Y~~~V~~----~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
++|+.+|.....-++. ..=.| .| .+|...+.+ ....-...+...+++++.+.+...
T Consensus 171 d~Gl~ip~~~~~~p~~~~es~~~~~e~~r~rI~G------~hi~~y~~~l~~~d~~~~~~~fs~~~k~~~~~~~~~~~~~ 244 (301)
T 7R81_G1 171 DGGIFIPHSENRFPGYDMESEELDAETLKKYIFG------GHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYA 244 (301)
T ss_pred cCCceecccCccCCCCCCCCcccCHHHHHHHHcc------ccHHHHHHHhcccCHHHHHHHHHHHHhcCCCcccHHHHHH
Q ss_pred HHHHHHHhc
Q FD01848239_023 90 NLQSDTRKN 98 (99)
Q Consensus 90 ~l~~~lR~~ 98 (99)
+.-..+|+.
T Consensus 245 ~~~~~I~~~ 253 (301)
T 7R81_G1 245 EAHAAIRED 253 (301)
T ss_pred HHHHHHHhC
No 32
>PF10520.13 ; Lipid_desat ; Lipid desaturase domain
Probab=36.28 E-value=37 Score=24.19 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCccccCChhhhcCHHHHhcC
Q FD01848239_023 1 YNRHHIIPYEFRNHPFLQRTN 21 (99)
Q Consensus 1 ~qaHHIIP~~~~~~~~l~~~g 21 (99)
+|.||..|.+....++++..|
T Consensus 34 f~~HH~~P~~~~~~~~~~~~~ 54 (178)
T E9HN67_DAPPU/1 34 FREHHIDPTAITRHDFIETNG 54 (178)
T ss_pred ccccCCCchhhccccHHHhch
No 33
>8FJG_A H12; De novo protein, Hallucination, repeat proteins, central pockets, pseudocyclic proteins; 2.13A {synthetic construct}
Probab=36.13 E-value=2.1e+02 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 57 SDYNKKMGGILDALEERAILD-GWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~-~~~~~~~~~~i~~l~~~lR~~L 99 (99)
..|-..+.+++.+-......+ .++.++.++.+..+++++-..+
T Consensus 57 ekyfekmeekikeefeklkkdpsvtledfkkklkeildemleai 100 (109)
T 8FJG_A 57 EKYFEKMEEKIKEEFEKLKKDPSVTLEDFKKKLKEILDEMLEAI 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH
No 34
>PF15500.10 ; Ntox1 ; Putative RNase-like toxin, toxin_1
Probab=35.90 E-value=2e+02 Score=19.94 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHH-------------HHHHHHHHHHh
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATK-------------EALNLQSDTRK 97 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~-------------~i~~l~~~lR~ 97 (99)
+..++++|++|..... .+++.+.+ ++..|+++|..
T Consensus 47 np~L~~~l~~ie~~~~---~dPe~kA~~~~~~~~~~~~~~~~~~L~q~Le~ 94 (109)
T Q1QPZ6_NITHX/6 47 DDALRAEMETLEAKRK---LAAKLEADGIPDRNFAKGLNKEAAKLQQKLET 94 (109)
T ss_pred CHHHHHHHHHHHHHHh---hCHHHHhcCCCchhhhhcchHHHHHHHHHHHH
No 35
>1GW3_A APOA-I; HIGH DENSITY LIPOPROTEINS, KEY IN VIVO COFACTOR FOR THE ENZYME LECITHIN-CHOLESTEROL TRANSFERASE, CHOLESTEROL EFFLUX, RECEPTOR BINDING; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=34.95 E-value=1.3e+02 Score=16.42 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcC
Q FD01848239_023 59 YNKKMGGILDALEERAILDGWDN--NRATKEALNLQSDTRKNL 99 (99)
Q Consensus 59 Y~~~V~~~Ld~i~~~~~~~~~~~--~~~~~~i~~l~~~lR~~L 99 (99)
|.+.++++|..=.+..+.. +.+ +++.+.|..=..++|+.|
T Consensus 3 ~~eel~~~l~~~~e~lr~~-l~P~~eel~~~l~~~~~el~~~l 44 (46)
T 1GW3_A 3 LGEEMRDRARAHVDALRTH-LAPYSDELRQRLAARLEALKENG 44 (46)
T ss_dssp CCSSTTTTTTTHHHHHHHH-TSSTTHHHHHHHHHGGGTSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhc
No 36
>6NZ1_C Design construct XXA_GVDQ; homotrimer, helix, DE NOVO PROTEIN; 1.9A {synthetic construct}
Probab=34.46 E-value=2.2e+02 Score=19.04 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=0.0 Template_Neff=1.600
Q ss_pred CCCcCCCCh--HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 48 DFKLDGLPH--SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 48 G~~~~~~~H--~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
| +| ..|-.++-++|.++.++...+ -|.+.+.+.+.-+....+.
T Consensus 1 G------SHMGTkyLk~~L~~Lke~LErLeKN-PseD~iVe~~r~IVe~n~~ 45 (98)
T 6NZ1_C 1 G------SHMGTEDLKYSLERLREILERLEEN-PSEKQIVEAIRAIVENNAQ 45 (98)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHH
T ss_pred C------CccchHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
No 37
>6DM9_D DHD15_extended_B; Computational design, heterodimer, coiled-coil, DE NOVO PROTEIN; HET: FME; 2.25A {synthetic construct}
Probab=34.07 E-value=2e+02 Score=18.42 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=0.0 Template_Neff=1.500
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 56 HSDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 56 H~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
|-.--+.+.+.|..+.+....-.-.++++.+.+.+++..+|.-|
T Consensus 17 ~~~im~E~~Eim~r~~~LL~KARGADE~V~~~ir~ii~RirEii 60 (78)
T 6DM9_D 17 SKRLLDEMAEIMRRIKKLLKKARGADEKVLDELRKIIERIRELL 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
No 38
>PF09677.14 ; TrbI_Ftype ; Type-F conjugative transfer system protein (TrbI_Ftype)
Probab=33.98 E-value=2.1e+02 Score=18.66 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 63 MGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 63 V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+.+-+++........++|+++..+....+...+.+.|
T Consensus 31 ~~~lv~~~~~~l~~~~ls~~e~~~~~~~f~~~l~~~i 67 (103)
T Q2G6C0_NOVAD/2 31 LSRILGDFIEAEARAGRPPEETRLRVQAYLKAVEASV 67 (103)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
No 39
>7QCA_LD0 60S ribosomal protein L5; Microsporidia, RIBOSOME; HET: K, MG; 2.78A {Spraguea lophii 42_110}
Probab=33.24 E-value=3.7e+02 Score=21.23 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred cceeecCCCCCCCCCCC------------cccCCCcCCCCh-HHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV------------IHADFKLDGLPH-SDYNKKMG----GILDALEERAILDGWDNNRATKEALN 90 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~------------~H~G~~~~~~~H-~~Y~~~V~----~~Ld~i~~~~~~~~~~~~~~~~~i~~ 90 (99)
++|+.+|.+...-++.. .=.| .| .+|...+. +.-..-...+...+++++.+.+.+.+
T Consensus 172 d~Gl~ip~~~~~~p~~~e~~~~~~~~~r~rI~g------~hi~~y~~~l~~~d~~~~~~~fs~~~~~~~~~~~~~~~~~~ 245 (291)
T 7QCA_LD0 172 DGGIKIPYSPKIFPGYNKDEEFDQQKLRDRIFG------KEVANYMQLLKKEDETKFKKQFSEYIKQNINAEDLEKMYEN 245 (291)
T ss_pred cCCCcCCCCCccCCCCCCCccccHHHHHHHHhc------chHHHHHHHhhhhCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHHHHHhc
Q FD01848239_023 91 LQSDTRKN 98 (99)
Q Consensus 91 l~~~lR~~ 98 (99)
.-..+++.
T Consensus 246 ~~~~i~~~ 253 (291)
T 7QCA_LD0 246 LFNSIVTK 253 (291)
T ss_pred HHHHHHhc
No 40
>6DMP_B Designed orthogonal protein DHD13_XAAA_B; De Novo protein, Computational design, coiled coil; NMR {synthetic construct}
Probab=32.33 E-value=2.1e+02 Score=18.32 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=0.0 Template_Neff=1.200
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
+.+-.+|+.|....... ++++++..+++.++|.
T Consensus 24 qelhrrle~ivr~~gss----eea~k~~~kileeire 56 (82)
T 6DMP_B 24 QELHRRLEEIVRQSGSS----EEAKKEAKKILEEIRE 56 (82)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHHH
No 41
>6DM9_C DHD15_extended_A; Computational design, heterodimer, coiled-coil, DE NOVO PROTEIN; HET: FME; 2.25A {synthetic construct}
Probab=31.52 E-value=2.3e+02 Score=18.17 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=0.0 Template_Neff=1.400
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 56 HSDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 56 H~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
|-.--+.+.+.|..+.+....-.-.++++.+.+.+++..+|+-|
T Consensus 17 hi~im~E~~Eim~r~~~LL~KARGADE~V~~~ir~ii~RirEii 60 (78)
T 6DM9_C 17 HIEIMREILELLQKMEELLEKARGADEDVAKTIKELLRRLKEII 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
No 42
>PF16305.9 ; DUF4947 ; Domain of unknown function (DUF4947)
Probab=31.49 E-value=3.5e+02 Score=20.30 Aligned_cols=35 Identities=9% Similarity=-0.101 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q FD01848239_023 59 YNKKMGGILDALEERAILDGWDNNRATKEALNLQS 93 (99)
Q Consensus 59 Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~ 93 (99)
+..+....++.|...+..+.+|.+++++.+-...+
T Consensus 88 ~~~l~~~E~~~ik~l~q~gklT~eQarAF~~~a~D 122 (167)
T Q8DRZ2_STRMU/5 88 QNGFKEKELENINELINSGSLTEEQGKAFYAVAVD 122 (167)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
No 43
>PF19903.3 ; DUF6376 ; Family of unknown function (DUF6376)
Probab=31.44 E-value=2.8e+02 Score=19.27 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHhcC
Q FD01848239_023 58 DYNKKMGGILDALEERAILDGWDNNRATK-EALNLQSDTRKNL 99 (99)
Q Consensus 58 ~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~-~i~~l~~~lR~~L 99 (99)
.||+.+...++........+.++++.+.. .|-+-++++..-+
T Consensus 68 ~~Ne~l~~~Id~~l~~i~~G~~~~~~le~sei~qti~~i~~l~ 110 (116)
T A0A2W1LIS0_9BA 68 SYNATLLAEVNTYLEQLEKNTINLGDLQNSPMAQTLNEITGTL 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHhcChHHHHHHHHHHHH
No 44
>5FBM_A DNA-binding protein HU; Histone-like protein, DNA binding, Dimerization, DNA BINDING PROTEIN; 1.9A {Streptococcus mutans serotype c (strain ATCC 700610 / UA159)} SCOP: l.1.1.1, a.55.1.0
Probab=31.01 E-value=2.1e+02 Score=17.77 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 68 DALEERAILD-GWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 68 d~i~~~~~~~-~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+++.+..... +++.+++.+.+..+.+.++..|
T Consensus 5 ~~l~~~ia~~~~l~~~~~~~vl~~l~~~i~~~l 37 (99)
T 5FBM_A 5 QDLIAKVAEATELTKKDSAAAVDAVFSAVSSYL 37 (99)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
No 45
>5TN2_D HTH-type transcriptional regulator SinR; biofilm formation, multimerization domain, TRANSCRIPTION; NMR {Bacillus subtilis (strain 168)}
Probab=30.09 E-value=1.5e+02 Score=16.75 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CCCcCCCChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 48 DFKLDGLPHSDYNKKMGGILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 48 G~~~~~~~H~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
| ++..+...+....-.+.......+++++++++.+.
T Consensus 1 ~------~~~~~~~~ld~EWi~Li~eA~~~Gitkeei~~fl~ 36 (47)
T 5TN2_D 1 G------SHMEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLD 36 (47)
T ss_dssp C------CCSCCSSCCCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred C------CccccccccCHHHHHHHHHHHHCCCCHHHHHHHHH
No 46
>8AZW_h uL18 (60S ribosomal protein L5); Plant, 80S, rRNA Modifications, ribosome; HET: K, 1MA, 5MC, UY1, SPD, OMU, OMC, PSU, OMG, SPM, A2M, UR3, MG; 2.14A {Nicotiana tabacum}
Probab=29.80 E-value=3.2e+02 Score=21.63 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred cceeecCCCCCCCCCC-------------CcccCCCcCCCCh-HHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTK-------------VIHADFKLDGLPH-SDYNKKMGG----ILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~-------------~~H~G~~~~~~~H-~~Y~~~V~~----~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
+.||.+|.+...-++. ..=.| .| .+|...+.+ ....-...+...+++++.+.+...
T Consensus 167 d~Gl~ip~~~~~~p~~~~e~~~~~~~~~r~~i~g------~hi~~y~~~l~eed~e~~kkqFs~~ik~~i~~~~~~~~~~ 240 (301)
T 8AZW_h 167 DGGLDIPHSEKRFAGFSKDSKQLDADVHRKYIYG------GHVATYMKTLTEDEPEKYQSHFSEYIKQGLEADDLEEMYK 240 (301)
T ss_pred hCCCCCCCCCcccCCCCCCCCcCCHHHHHHHHhh------ccHHHHHhhccccCHHHHHHHHHHHHHcCCChhhHHHHHH
Q ss_pred HHHHHHHhc
Q FD01848239_023 90 NLQSDTRKN 98 (99)
Q Consensus 90 ~l~~~lR~~ 98 (99)
..-..+|+.
T Consensus 241 ~~~~~I~~~ 249 (301)
T 8AZW_h 241 KVHAAIRAD 249 (301)
T ss_pred HHHHHHHhC
No 47
>3HE5_B SYNZIP2; heterodimeric coiled-coil, DE NOVO PROTEIN; 1.75A {artificial gene}
Probab=29.00 E-value=2e+02 Score=16.78 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+.+++.++..+.+. ++..+.-.+-+++++..+|.++
T Consensus 5 naylrkkiarlkkd----nlqlerdeqnlekiianlrdei 40 (52)
T 3HE5_B 5 NAYLRKKIARLKKD----NLQLERDEQNLEKIIANLRDEI 40 (52)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cchhHhHHHHHHHHHHHHHHHH
No 48
>7C70_B Sugar ABC transporter, periplasmic sugar-binding protein; Conformational dynamics, substrate-binding protein, Induced-fit mechanism, Two-step ligand binding, Venus Fly-trap mechanism, SUGAR BINDING PROTEIN; HET: PEG, SO4, BGC, EDO, PGO; 1.63A {Thermus thermophilus HB8}
Probab=28.74 E-value=4.1e+02 Score=20.25 Aligned_cols=42 Identities=2% Similarity=-0.153 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
..+...+...+..+......+..+++++.+.+++.+++....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~~~~~~~~~~~~~ 415 (423)
T 7C70_B 374 GGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQA 415 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
No 49
>PF20136.3 ; DUF6526 ; Family of unknown function (DUF6526)
Probab=28.56 E-value=2e+02 Score=20.74 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q FD01848239_023 65 GILDALEERAILDGWDNNRATKEALNLQSD 94 (99)
Q Consensus 65 ~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~ 94 (99)
++|-++.++...+++++++++++|.+..-+
T Consensus 111 ~El~~L~~~a~~e~l~~~~IK~~I~~Wr~D 140 (144)
T A0A0B4R8B5_9BA 111 AEVVGLAERAVIEELSADDIKKSINMWRAD 140 (144)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhhccc
No 50
>PF21616.1 ; Topo-V_HhH_2_2nd ; Topoisomerase V, second (HhH)2 tandem domain
Probab=28.17 E-value=2.2e+02 Score=17.08 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=0.0 Template_Neff=1.200
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 56 H-SDYNKKMGGILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 56 H-~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
| ..-.-.....|++|.+.+..+.++.+....+|+
T Consensus 23 hfesiagilatdle~i~rmyeeg~ls~eay~aav~ 57 (58)
T F1SVL0_METKA/3 23 HFESIAGILATDLEEIERMYEEGRLSEEAYRAAVE 57 (58)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCCCHHHHHHHhc
No 51
>2HEP_A UPF0291 protein ynzC; SR384, AUTOSTRUCTURE, Northeast Structural Genomics Consortium, PSI-1, Protein Structure Initiative, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=27.63 E-value=2.9e+02 Score=18.20 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHH--HHHH-HHHHHHhcC
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATK--EALN-LQSDTRKNL 99 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~--~i~~-l~~~lR~~L 99 (99)
+.+.++++.+.......++|+++..+ .+.. .++.+|..+
T Consensus 4 ~eli~rIN~Lakk~K~~gLT~eE~~Eq~~LR~~Yi~~~r~~~ 45 (85)
T 2HEP_A 4 NAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSM 45 (85)
T ss_dssp SHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
No 52
>2YXY_A Hypothetical conserved protein, GK0453; GK0453, alpha and beta proteins (a+b) class, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NPPSFA, National Project on Protein; 2.2A {Geobacillus kaustophilus}
Probab=27.48 E-value=2.3e+02 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 67 LDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 67 Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
+.....++. .+|++++.++|..|.++.|+.
T Consensus 4 ~~~m~kryS--qMt~~EL~~Ei~~L~e~~~kA 33 (115)
T 2YXY_A 4 IKGEQKRYS--EMTKEELQQEIAMLTEKARKA 33 (115)
T ss_dssp ---CCCCGG--GCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhHh--cCCHHHHHHHHHHHHHHHHHH
No 53
>6P4X_B Glucokinase-1; hexokinase, transferase, actin atpase, glycolysis; HET: PO4; 3.59A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=27.23 E-value=3.7e+02 Score=21.97 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 56 HSDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 56 H~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
|..=...+.+.+++|.+.+. ++.+++.+-+..+.++++.+|
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~---ls~~~l~~i~~~l~~~~~~gl 47 (500)
T 6P4X_B 7 HKATERAVIQAVDQICDDFE---VTPEKLDELTAYFIEQMEKGL 47 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHhc
No 54
>PF21106.1 ; YtxK_like ; YtxK N-terminal helical domain
Probab=26.93 E-value=1.8e+02 Score=18.23 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATKEAL 89 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~ 89 (99)
+..+.++|..+........++++++++.++
T Consensus 44 ~~e~~~~L~~~~~~~~~~~~~~ee~Rka~Q 73 (80)
T I3ECH4_BACMM/7 44 SEITVKRLRKKYKEINLEKYSNEEIRKAYQ 73 (80)
T ss_pred CHHHHHHHHHHHHhcCHhhCCHHHHHHHHH
No 55
>PF05979.16 ; DUF896 ; Bacterial protein of unknown function (DUF896)
Probab=26.90 E-value=2.5e+02 Score=17.18 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHH--HHHH-HHHHHHhcC
Q FD01848239_023 63 MGGILDALEERAILDGWDNNRATK--EALN-LQSDTRKNL 99 (99)
Q Consensus 63 V~~~Ld~i~~~~~~~~~~~~~~~~--~i~~-l~~~lR~~L 99 (99)
+.++++.+.......++|+++..+ .+.+ .++.+|..+
T Consensus 2 ~i~RINeLakk~K~~~LT~eE~~Eq~~LR~~Yl~~~r~~~ 41 (61)
T R7FCB8_9FIRM/4 2 KLARINELAKKSRTEGLTTEEKQEQEALRNEYRRAVVGNL 41 (61)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
No 56
>PF04690.17 ; YABBY ; YABBY protein
Probab=26.40 E-value=2.7e+02 Score=19.89 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALN 90 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~ 90 (99)
..|+.+|++.+..+..... +++..++...+.+
T Consensus 113 saYn~Fik~ei~~ik~~~p--~i~hke~f~~aa~ 144 (156)
T M1A5M2_SOLTU/9 113 SAYNRFIKEEIQRIKASNP--DISHREAFSTAAK 144 (156)
T ss_pred hHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHH
No 57
>7KDF_B NUF2 isoform 1,NUF2 isoform 1; Stu2, tension sensing, Ndc80, kinetochore, CELL CYCLE; HET: SO4; 2.72A {Saccharomyces cerevisiae}
Probab=26.01 E-value=2.5e+02 Score=20.69 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q FD01848239_023 60 NKKMGGILDALEERAILD-GWDNNRATKEALNLQSDTR 96 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~-~~~~~~~~~~i~~l~~~lR 96 (99)
.+.++++++++....... .-.-+++.+++..|.++||
T Consensus 178 ~~~l~~~i~~l~~~~~~~~~~~~~~l~~~~~~L~~~L~ 215 (215)
T 7KDF_B 178 IKQLQKDFEVEVKEIEIEYSLLSGHINKYMNEMLEYMQ 215 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 58
>5UDO_D A118 serine integrase; site-specific recombination, coiled-coil, RECOMBINATION; 2.541A {Listeria innocua}
Probab=25.71 E-value=4.3e+02 Score=19.48 Aligned_cols=37 Identities=8% Similarity=-0.012 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
..++.+++.+.+....+.++.+.+.+.+..+..++.+
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (328)
T 5UDO_D 224 KIEHAKKKRLFDLYINGSYEVSELDSMMNDIDAQINY 260 (328)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
No 59
>PF06570.15 ; DUF1129 ; Protein of unknown function (DUF1129)
Probab=25.49 E-value=3.9e+02 Score=19.02 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
++.-++-++++....+..++++++..+.+.++.+.+.+.
T Consensus 3 ~~~n~~~~~~l~~~L~~~~~~~~~~ee~l~~~~~~l~ea 41 (201)
T Q38ZQ5_LATSS/2 3 SKKNADYLFKFKRALKEENVSDEKQAEMLAEMLPEMLEA 41 (201)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
No 60
>5CW4_B Protein FAM175B; Metal dependent enzyme, METAL BINDING PROTEIN; HET: MSE, GOL; 2.543A {Camponotus floridanus}
Probab=24.50 E-value=3.5e+02 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 57 SDYNKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
..+.+.+.++|..+.+......-.-.++.++|..|..+++..
T Consensus 226 ~~~~~~l~~~L~~l~~~v~~sE~~l~~L~~ev~~L~~~l~~~ 267 (289)
T 5CW4_B 226 MLIQKAAEHHLMSLIPKVCESDLEVAELEKQVHELKIKIATQ 267 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>2CAZ_B VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS28; PROTEIN TRANSPORT, ESCRT, MVB, MULTIVESICULAR BODIES, ENDOSOME, LYSOSOME, PH DOMAIN, PROTEIN SORTING, VESICLE TRAFFICKING, UBIQUITIN, PHOSPHOINOSITIDE; 3.6A {SACCHAROMYCES CEREVISIAE} SCOP: a.2.17.2
Probab=24.39 E-value=4.3e+02 Score=19.37 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 63 MGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 63 V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
|-..|+.+++.+..+.++.++......+|++..+..+
T Consensus 54 II~tlE~LEkAyvrd~I~~~eYt~~C~rLI~Qykt~~ 90 (155)
T 2CAZ_B 54 IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYL 90 (155)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHhHHHHHHHHHHHHHHH
No 62
>PF08855.14 ; DUF1825 ; Domain of unknown function (DUF1825)
Probab=24.14 E-value=3.6e+02 Score=18.02 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 64 GGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 64 ~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+..++.+......-++++.++.+.+......+|+.|
T Consensus 68 ~~~~~~~~~~~~~~G~~~~~~~~~m~~~l~~mr~~~ 103 (103)
T K9TWP3_CHRTP/1 68 QMTVEQLRTQLNQFGITPQQMFEQMHNTLERMKAEL 103 (103)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhC
No 63
>PF11460.12 ; DUF3007 ; Protein of unknown function (DUF3007)
Probab=22.91 E-value=3.9e+02 Score=18.03 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred cCCCCh---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q FD01848239_023 51 LDGLPH---SDYNKKMGGILDALEERAILDGWDNNRATKEALNL 91 (99)
Q Consensus 51 ~~~~~H---~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l 91 (99)
.++++| .+|.+.| +.++.+ .+++++..+-..++
T Consensus 60 k~MTy~qQl~~Ye~av------l~kRle--els~eE~~~L~~e~ 95 (96)
T B0C6F9_ACAM1/1 60 GNMTYNQQREDYENAL------LEKRLQ--EMTPEELEALQASI 95 (96)
T ss_pred CCCCHHHHHHHHHHHH------HHHHHH--hCCHHHHHHHHHhh
No 64
>3J79_R 60S ribosomal protein uL18; emetine, RIBOSOME-INHIBITOR complex; HET: MG; 3.2A {Plasmodium falciparum}
Probab=22.53 E-value=5.9e+02 Score=20.31 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred cceeecCCCCCCCCC----------CCcccCCCcCCCCh-HHHHHHHHHH-H---HHHHHHHHhcCCCHHHHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPT----------KVIHADFKLDGLPH-SDYNKKMGGI-L---DALEERAILDGWDNNRATKEALNLQ 92 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~----------~~~H~G~~~~~~~H-~~Y~~~V~~~-L---d~i~~~~~~~~~~~~~~~~~i~~l~ 92 (99)
+.|+.+|.+...-++ +..-.| .| .+|...+.+. - ..-...+...+++++.+.+...+.-
T Consensus 170 d~Gl~ip~~~~~~p~~~~~y~~e~~r~rI~G------~hi~~y~~~l~~~d~~~y~~~fs~~~k~~~~~~~~~~~~~~~~ 243 (294)
T 3J79_R 170 DGGLNIPHGNNRFPGSKNEFNPEQLRKNILG------IHVAEYMKTLQEEDNDKYKTHFNDYLKNNIGADDIEQMYLNAH 243 (294)
T ss_dssp HTTCBCCCCGGGSSCC---CCHHHHHHHHHT------HHHHHHHHHHHHSCHHHHHHHTHHHHHHTCCTTHHHHHHHHHH
T ss_pred hCCccccCCCccCCCCCcCCCHHHHHHHhhc------ccHHHHHHhhchhChHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q ss_pred HHHHhc
Q FD01848239_023 93 SDTRKN 98 (99)
Q Consensus 93 ~~lR~~ 98 (99)
..+|+.
T Consensus 244 ~~I~~~ 249 (294)
T 3J79_R 244 EKIRQN 249 (294)
T ss_dssp HHHHHC
T ss_pred HHHHhC
No 65
>6KSR_A Phosphotransferase; Hexokinase, BIOSYNTHETIC PROTEIN, TRANSFERASE; HET: GLA; 1.37A {Eimeria tenella} SCOP: c.55.1.0
Probab=22.51 E-value=2.7e+02 Score=22.19 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 60 NKKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 60 ~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+..+.+.|+++...+. ++.+++.+-.+.+.++++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~---l~~~~l~~i~~~~~~~~~~~l 38 (467)
T 6KSR_A 2 NNSLEQKAEQVLAPLR---LSKEKLQDLSKTFSDELLRGL 38 (467)
T ss_dssp CTHHHHHHHHHHGGGS---CCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
No 66
>PF18175.5 ; HU-CCDC81_bac_2 ; CCDC81-like prokaryotic HU domain 2
Probab=22.51 E-value=2.5e+02 Score=15.69 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 70 LEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 70 i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+..-....+++..++...+..+.+.++..|
T Consensus 4 ~~~ia~~~~~~~~~~~~~l~~~~~~i~~~l 33 (69)
T F0P1J6_WEEVC/5 4 INALMRKQSMSQEKALETIQNQVRFWQEHL 33 (69)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
No 67
>2F6M_D Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, Vps23, Vps28, Vacuole Protein Sorting, ESCRT protein complexes, Endosomal Sorting Complex Required for; HET: DDQ; 2.1A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=22.32 E-value=4e+02 Score=18.00 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 63 MGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 63 V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
|-..|+.+++.+..+.+++++......+|+...+.
T Consensus 37 ii~tle~LEka~~rd~I~~~eY~~~C~~Li~qyk~ 71 (109)
T 2F6M_D 37 IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKV 71 (109)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHhHHHHHHHHHHHHH
No 68
>5MK9_A MalE1; carbohydrate binding protein, lactobacillus casei, sugar binding protein; HET: GLC; 0.919A {Lactobacillus casei}
Probab=22.30 E-value=5.2e+02 Score=19.26 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
..+...+.......-.+..+++++.+.+.+..+++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~g~~t~~~~~~~l~~~~~~~~~~ 378 (379)
T 5MK9_A 341 ATFWNDAAPLINGAYTGSIPASQYSTKLDTFVKNISKA 378 (379)
T ss_dssp HHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHCCC
T ss_pred hHHhhhhHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
No 69
>5UOI_A HHH_rd1_0142; de novo design, all-alpha, helix-helix-helix, mini protein, DE NOVO PROTEIN; NMR {Escherichia coli}
Probab=22.15 E-value=2.6e+02 Score=15.72 Aligned_cols=25 Identities=12% Similarity=0.136 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHH
Q FD01848239_023 66 ILDALEERAILD-GWDNNRATKEALN 90 (99)
Q Consensus 66 ~Ld~i~~~~~~~-~~~~~~~~~~i~~ 90 (99)
+-++|..+.+.. +++++++++++++
T Consensus 2 kweeiaerlreefninpeeareavek 27 (43)
T 5UOI_A 2 KWEEIAERLREEFNINPEEAREAVEK 27 (43)
T ss_dssp CSHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHH
No 70
>PF09650.14 ; PHA_gran_rgn ; Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)
Probab=22.12 E-value=2.5e+02 Score=17.53 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 78 GWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 78 ~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+++.++++++++.+.+++.+..
T Consensus 8 ~l~~~ea~~ri~~~~~~l~~~~ 29 (87)
T Q2S0D4_SALRD/2 8 SLGLDDGRAAVGRVADKLETEL 29 (87)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
No 71
>8BTR_LF Ribosomal protein L5; Ribosome, Translation, Giardia, Eukaryote, Eukaryotic, Macromolecule, tRNA; 3.25A {Giardia lamblia ATCC 50803}
Probab=21.70 E-value=6.6e+02 Score=20.25 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred cceeecCCCCCCCCCCC-----------cccCCCcCCCCh-HHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTKV-----------IHADFKLDGLPH-SDYNKKM----GGILDALEERAILDGWDNNRATKEALNL 91 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~~-----------~H~G~~~~~~~H-~~Y~~~V----~~~Ld~i~~~~~~~~~~~~~~~~~i~~l 91 (99)
++|+.+|.+...-++.. .=.| .| .+|...+ .+....-...+...+++++.+.+...+.
T Consensus 176 d~Gl~ip~~~~~fp~~~~e~y~~e~~r~rI~G------~hi~~y~~~l~~~d~~~y~~~fs~~~~~~~~~~~~~~~~~~~ 249 (297)
T 8BTR_LF 176 DAGLNIPHSMKRFPGYSKDGFDSSALRDRIMG------KHVGDYMAELKAEDEETYRKRFSKYIAAKVEPLRLEAMYTKA 249 (297)
T ss_pred HcCCccccCCccCCCCCCCCCCHHHHHHHHcc------ccHHHHHHHhhhcCHHHHHHHHHHHHHcCCChhhHHHHHHHH
Q ss_pred HHHHHhc
Q FD01848239_023 92 QSDTRKN 98 (99)
Q Consensus 92 ~~~lR~~ 98 (99)
...+|+.
T Consensus 250 ~~~I~~~ 256 (297)
T 8BTR_LF 250 HAAIRAN 256 (297)
T ss_pred HHHHHhC
No 72
>6S7O_E Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; N-glycosylation, Oligosaccharyltransferase, OSTA, TRANSFERASE; HET: NAG, KZE, MAN, EGY, BMA, KZB; 3.5A {Homo sapiens}
Probab=21.54 E-value=5.5e+02 Score=22.16 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 61 KKMGGILDALEERAILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 61 ~~V~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
..+.+.|.++..++..+.++.+...+.+.++.+++++
T Consensus 559 ~~~~~~l~~~~~~y~~gkisr~~y~kl~~~~~k~i~k 595 (607)
T 6S7O_E 559 KELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQE 595 (607)
T ss_dssp HHHHHHTTSSSCCSHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
No 73
>6QLF_Y Inner kinetochore subunit NKP1; inner kinetochore, CCAN, DNA BINDING PROTEIN; 3.45A {Saccharomyces cerevisiae}
Probab=21.36 E-value=6.4e+02 Score=19.98 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred HHHHHHHHHHHHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHh
Q FD01848239_023 57 SDYNKKMGGILDALEER----AILDGWDNNRATKEALNLQSDTRK 97 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~----~~~~~~~~~~~~~~i~~l~~~lR~ 97 (99)
..|...|...|.++... .+..+.+|+ .++.+.+|++.++.
T Consensus 195 ~~Y~~~l~~~LkE~~~llE~~lK~~~~~p~-k~~~L~~ii~~l~~ 238 (238)
T 6QLF_Y 195 ATYNGKLVVALEEMKLLLEEAVKTFGNSPE-KREKIKKILSELKK 238 (238)
T ss_dssp HTHHHHHHHHHHHHHHHHHTTTSSSCCSSH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhcC
No 74
>1SF9_A yfhH hypothetical protein; Structural Genomics, unknown function, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; 1.71A {Bacillus subtilis} SCOP: b.34.15.1, l.1.1.1
Probab=21.34 E-value=3.4e+02 Score=19.44 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q FD01848239_023 70 LEERAILDGWDNNRATKEALNLQSDTRKN 98 (99)
Q Consensus 70 i~~~~~~~~~~~~~~~~~i~~l~~~lR~~ 98 (99)
..++++ .+|++++.++|..|.++.|+.
T Consensus 25 m~kryS--qMt~~EL~~EI~~Lke~~~kA 51 (128)
T 1SF9_A 25 MEKRYS--QMTPHELNTEIALLSEKARKA 51 (128)
T ss_dssp HHHHHH--TCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHh--cCCHHHHHHHHHHHHHHHHHH
No 75
>6RM3_LD0 uL18; Microsporidia, Ribosome, Intracellular Parasite; HET: MG; 3.4A {Vairimorpha necatrix}
Probab=21.21 E-value=5.4e+02 Score=20.50 Aligned_cols=65 Identities=15% Similarity=0.029 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cceeecCCCCCCCCCC------------CcccCCCcCCCCh-HHHHHHHHH--HH--HHHHHHHHhcCCCHHHHHHHHHH
Q FD01848239_023 28 TNMTYLPVADGIHPTK------------VIHADFKLDGLPH-SDYNKKMGG--IL--DALEERAILDGWDNNRATKEALN 90 (99)
Q Consensus 28 ~Ngi~LP~~~~~~~~~------------~~H~G~~~~~~~H-~~Y~~~V~~--~L--d~i~~~~~~~~~~~~~~~~~i~~ 90 (99)
++||.+|.+...-+++ ..-.| .| .+|...+.+ .. ..-...+...+++++.+.+.+.+
T Consensus 173 d~Gl~ip~~~~~~p~~~e~~~y~~~~~r~ri~g------~hi~~y~~~l~~~d~~~y~~~fs~~~~~~~~~~~~~~~~~~ 246 (295)
T 6RM3_LD0 173 DAGVYIPHSESKFIGYEKNKPFKADELRDRIFC------KHVSEYMKTLKENDEEKFKIQFSDYIKKNIEPDNIAGIYQN 246 (295)
T ss_pred cCCcccccCCcccCCCCCCCCCCHHHHHHHhch------hhHHHHHHHhcccCHHHHHHHHHHHHHhcCCcccHHHHHHH
Q ss_pred HHHHHHhc
Q FD01848239_023 91 LQSDTRKN 98 (99)
Q Consensus 91 l~~~lR~~ 98 (99)
.-..+++.
T Consensus 247 ~~~~I~~~ 254 (295)
T 6RM3_LD0 247 ALDGIIKN 254 (295)
T ss_pred HHHHHHhC
No 76
>PF06738.16 ; ThrE ; Putative threonine/serine exporter
Probab=21.15 E-value=4.3e+02 Score=19.64 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q FD01848239_023 65 GILDALEERAILDGWDNNRATKEALNLQS 93 (99)
Q Consensus 65 ~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~ 93 (99)
++++++.++...++++.+++.++++++..
T Consensus 72 ~~v~~l~~~~~~~~i~~~~a~~~L~~i~~ 100 (238)
T R7G2W2_9FIRM/1 72 DYLNNLCRYVCQHTPDEKEMREKYLEVIN 100 (238)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh
No 77
>PF11527.12 ; ARL2_Bind_BART ; The ARF-like 2 binding protein BART
Probab=20.96 E-value=3.8e+02 Score=17.24 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q FD01848239_023 56 HSDYNKKMGGILDALEERAILDGWDNNRATKEA 88 (99)
Q Consensus 56 H~~Y~~~V~~~Ld~i~~~~~~~~~~~~~~~~~i 88 (99)
|..|...|.+.|+....... ++.++..+.+
T Consensus 47 ~~~y~~l~e~~l~~fl~~~g---~~~~~~~~~~ 76 (118)
T A7SHQ3_NEMVE/4 47 HKNYKEMVDSLLSSFVKDVG---ITEEQFAVAC 76 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCHHHHHHHH
No 78
>3OIQ_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, PROTEIN BINDING; 2.4A {Saccharomyces cerevisiae}
Probab=20.90 E-value=2.1e+02 Score=15.53 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=0.0 Template_Neff=1.100
Q ss_pred HHHHHHHHHHHHHHH
Q FD01848239_023 58 DYNKKMGGILDALEE 72 (99)
Q Consensus 58 ~Y~~~V~~~Ld~i~~ 72 (99)
.|.+.|.+.||+.+.
T Consensus 11 ry~ndvqdllddven 25 (36)
T 3OIQ_B 11 RYANDVQDLLDDVEN 25 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
No 79
>PF15207.10 ; TMEM240 ; TMEM240 family
Probab=20.71 E-value=56 Score=24.48 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred CCccccCChh
Q FD01848239_023 1 YNRHHIIPYE 10 (99)
Q Consensus 1 ~qaHHIIP~~ 10 (99)
.|+||+||.+
T Consensus 56 h~v~~VIPY~ 65 (179)
T W5NYK5_SHEEP/1 56 HHVHYVIPYD 65 (179)
T ss_pred cceEEEecCC
No 80
>1YWW_A Hypothetical protein PA4738; structural genomics, YjbJ, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; NMR {Pseudomonas aeruginosa} SCOP: a.60.11.0
Probab=20.68 E-value=3.5e+02 Score=16.69 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q FD01848239_023 57 SDYNKKMGGILDALEERAILD-GWDNNRATKEALNLQSDT 95 (99)
Q Consensus 57 ~~Y~~~V~~~Ld~i~~~~~~~-~~~~~~~~~~i~~l~~~l 95 (99)
.+....++.+.+++....... +.+.+++.++|..+.++|
T Consensus 46 ~~d~~~~~G~~~~l~g~iq~~~g~~~e~a~~~i~~~~~~~ 85 (85)
T 1YWW_A 46 DDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDRL 85 (85)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHhCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
No 81
>4UA8_A Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-); solute-binding protein maltotriose ABC, TRANSPORT PROTEIN; HET: PEG, EDO, GLC; 1.54A {Eubacterium rectale DSM 17629}
Probab=20.34 E-value=3e+02 Score=20.68 Aligned_cols=37 Identities=5% Similarity=0.057 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 63 MGGILDALEERAIL---DGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 63 V~~~Ld~i~~~~~~---~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
+...+..+...... +..+++++.+.+.+..+++.+.|
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~t~e~~~~~l~~~~~~~~~~l 399 (400)
T 4UA8_A 360 YWDAATPFGDAFQNGAEGQITKDNAAQKTEDFNTQLNDSL 399 (400)
T ss_dssp HHHHHHHHHHTTSTTCTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred hhhcchhHhHHHhhccCCccChhhHHHHHHHHHHHHHHhc
No 82
>6LMJ_A A104R; Complex, dsDNA, ASFV, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 2.8A {African swine fever virus}
Probab=20.17 E-value=4e+02 Score=17.11 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Q FD01848239_023 64 GGILDALEERAILDGWDNNRATKEALNLQSDTRKNL 99 (99)
Q Consensus 64 ~~~Ld~i~~~~~~~~~~~~~~~~~i~~l~~~lR~~L 99 (99)
.+..+.|.++.. ++..++...+..+.+.+++.|
T Consensus 18 ~~l~~~ia~~~~---~s~~~v~~vl~~~~~~i~~~L 50 (110)
T 6LMJ_A 18 QELYSLVAADTQ---LNKALIERIFTSQQKIIQNAL 50 (110)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHH