Query FD01873430_03463 RHS repeat family protein
Match_columns 119
No_of_seqs 17 out of 22
Neff 3.2177
Searched_HMMs 86581
Date Mon Feb 26 21:10:49 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4267588.hhr -oa3m ../results/4267588.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15633.10 ; Tox-ART-HYD1 ; HY 99.2 6.7E-12 7.7E-17 81.9 1.4 92 4-101 1-95 (101)
2 PF13151.10 ; DUF3990 ; Protein 52.8 45 0.00053 23.9 3.6 68 2-85 1-68 (147)
3 7ZHL_A RHS repeat protein; bac 39.6 1.2E+02 0.0014 21.0 4.0 69 2-93 5-74 (116)
4 4KZS_A LPP20 lipofamily protei 33.6 1.7E+02 0.0019 23.7 4.4 60 42-109 182-244 (285)
5 PF20033.3 ; DUF6438 ; Domain o 32.4 1.6E+02 0.0018 18.3 3.3 32 16-54 19-50 (76)
6 PF10694.13 ; DUF2500 ; Protein 26.9 70 0.00081 22.3 1.2 34 65-98 58-91 (106)
7 2XND_H ATP SYNTHASE SUBUNIT DE 25.5 2.5E+02 0.0028 20.1 3.7 69 39-109 9-77 (131)
8 PF04025.16 ; RemA-like ; Extra 25.5 1.1E+02 0.0013 20.8 1.9 13 42-54 59-71 (73)
9 7P1W_A Putative regulatory pro 24.9 1.1E+02 0.0013 22.3 2.0 13 42-54 70-82 (94)
10 2JDI_H ATP SYNTHASE DELTA CHAI 21.8 3.6E+02 0.0042 20.1 4.1 69 39-109 23-91 (146)
No 1
>PF15633.10 ; Tox-ART-HYD1 ; HYD1 signature containing ADP-ribosyltransferase
Probab=99.21 E-value=6.7e-12 Score=81.94 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=62.1 Template_Neff=10.100
Q ss_pred EEEecCcccccceeccccEEeCCCCcCCCCccCCCCCceEEEcCCHHHHhhc---CccccccCCccceeEEEEEEechhh
Q FD01873430_034 4 VYHYTSKDGYNGIMGSGTIQTKDPGARGKGSIQGKPQGVYVTTLSPEELKSS---GLRGKMGLTKEKSTHFISFEIDSSK 80 (119)
Q Consensus 4 VyHYTdK~GYngI~~s~~I~~~~~~~ra~~~~kg~p~GVYVTt~SPe~L~~~---g~k~~lGlT~eKSt~yi~Fevd~s~ 80 (119)
+||||+++|+++|..++.|..+.+....... ..+.|||+|.+.|+..... ..-..+.....|.+|+|+|++++..
T Consensus 1 ~yHyt~~~g~~~I~~~~~i~~s~~~~~~~~~--~~g~g~y~t~~~p~~~~~~~~~~~~~~~~~~~~k~~~~i~id~~~~~ 78 (101)
T G8M247_ACECE/5 1 LYHYTDEVGLNGILNSKKLKPSLKAVNPKDA--RYGNGQYLSDIIPGTKTPGQLSKQFINNPFQGKRFTYYIEIDVTDLN 78 (101)
T ss_pred CcccCCHHHHHHHHccCCCCCCcccCCcccc--ccCCCeeccCCCCCCCChHHHHhhhhCCcccccceEEEEEEEcCCCe
Confidence 5999999999999999999874332112211 2578999999999987433 2222455566899999999999954
Q ss_pred eeEecCCCCeEEEEEEcCeEe
Q FD01873430_034 81 VKRVDRQNGYLRLYIEEDIVL 101 (119)
Q Consensus 81 lK~v~~~~g~~r~yi~gDv~L 101 (119)
+ +...+.+ ..+.+|+.|
T Consensus 79 ~--~~~~~~v--~~~~~~~~l 95 (101)
T G8M247_ACECE/5 79 I--IKGRDGV--YVVLGEEPL 95 (101)
T ss_pred e--EeCCCCE--EEeCCCCCC
Confidence 3 3333333 233555544
No 2
>PF13151.10 ; DUF3990 ; Protein of unknown function (DUF3990)
Probab=52.84 E-value=45 Score=23.85 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred eEEEEecCcccccceeccccEEeCCCCcCCCCccCCCCCceEEEcCCHHHHhhcCccccccCCccceeEEEEEEechhhe
Q FD01873430_034 2 VRVYHYTSKDGYNGIMGSGTIQTKDPGARGKGSIQGKPQGVYVTTLSPEELKSSGLRGKMGLTKEKSTHFISFEIDSSKV 81 (119)
Q Consensus 2 v~VyHYTdK~GYngI~~s~~I~~~~~~~ra~~~~kg~p~GVYVTt~SPe~L~~~g~k~~lGlT~eKSt~yi~Fevd~s~l 81 (119)
+.+||-|+. ....+.+ .......--++|.|+|+- .+.+.. +..............+.|+++.+.+
T Consensus 1 ~~lyHGT~~-------~~~~~~~-----~~~~~~~DFG~GfY~t~~--~~~A~~-~a~~~~~~~~~~~~v~~~~i~~~~~ 65 (147)
T F5YIS2_TREPZ/1 1 MKVYHGSSA-------VVNKPDI-----KFSRKNLDFGKGFYVTSY--QEQAEN-WAKRKALRKGTAPIVSAYTLNEDFD 65 (147)
T ss_pred CeEeecccc-------cccCCcc-----ccCCCCCCCCCEEEEeCC--HHHHHH-HHHHHHHhcCCCCEEEEEEeCCCch
Q ss_pred eEec
Q FD01873430_034 82 KRVD 85 (119)
Q Consensus 82 K~v~ 85 (119)
. ++
T Consensus 66 ~-l~ 68 (147)
T F5YIS2_TREPZ/1 66 R-FQ 68 (147)
T ss_pred h-cc
No 3
>7ZHL_A RHS repeat protein; bacterial toxin, secreted toxin, T6SS, ADP-ribosyltransferase, translation inhibitor, TOXIN; 2.2A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=39.59 E-value=1.2e+02 Score=20.97 Aligned_cols=69 Identities=10% Similarity=0.310 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred eEEEEecCcccccceeccccEEeCCCCcCCCCccCCCCCceEEEc-CCHHHHhhcCccccccCCccceeEEEEEEechhh
Q FD01873430_034 2 VRVYHYTSKDGYNGIMGSGTIQTKDPGARGKGSIQGKPQGVYVTT-LSPEELKSSGLRGKMGLTKEKSTHFISFEIDSSK 80 (119)
Q Consensus 2 v~VyHYTdK~GYngI~~s~~I~~~~~~~ra~~~~kg~p~GVYVTt-~SPe~L~~~g~k~~lGlT~eKSt~yi~Fevd~s~ 80 (119)
++|.++.+...|..+..++.+... .....||.. ..++..... ..+...|++|.++.+.
T Consensus 5 ~~vgr~ms~~e~~~m~~tg~v~~~------------~~g~t~v~~~~~~~~~~~~---------~~~g~~~vefdv~~~~ 63 (116)
T 7ZHL_A 5 ATVGRWMGPAEYQQMLDTGTVVQS------------STGTTHVAYPADIDAFGKQ---------AKNGAMYVEFDVPEKS 63 (116)
T ss_dssp EEEEEEECHHHHHHHHHHTBCCCC------------TTSEEEEBSSCCTTSSTTT---------SCTTCEEEEEEEEGGG
T ss_pred eeeccccCHHHHHHHHhhCCeeec------------CCCceeeecCcChhhhhhh---------ccCCceEEEeecCHHh
Q ss_pred eeEecCCCCeEEE
Q FD01873430_034 81 VKRVDRQNGYLRL 93 (119)
Q Consensus 81 lK~v~~~~g~~r~ 93 (119)
|..- +.+..++
T Consensus 64 l~~~--~~gw~~~ 74 (116)
T 7ZHL_A 64 LVPT--NEGWAKI 74 (116)
T ss_dssp CBCC--SSSSEEE
T ss_pred cccC--CCcceEe
No 4
>4KZS_A LPP20 lipofamily protein; Helicobacter pylori, secreted proteins, outer membrane, Tol-Pal system, Three-helix bundle, UNKNOWN FUNCTION; HET: 1PE; 2.7A {Helicobacter pylori R046Wa}
Probab=33.61 E-value=1.7e+02 Score=23.70 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred eEEEcCCHHHHhhc--Ccccccc-CCccceeEEEEEEechhheeEecCCCCeEEEEEEcCeEeecccccee
Q FD01873430_034 42 VYVTTLSPEELKSS--GLRGKMG-LTKEKSTHFISFEIDSSKVKRVDRQNGYLRLYIEEDIVLRDVNNKLR 109 (119)
Q Consensus 42 VYVTt~SPe~L~~~--g~k~~lG-lT~eKSt~yi~Fevd~s~lK~v~~~~g~~r~yi~gDv~Lrd~N~k~~ 109 (119)
|.|..-.++.+... ..-+.++ .+++.+.|.|.+.+... .+...+++..++.+.|.++..+
T Consensus 182 v~v~~~~~~~i~~~l~~~L~g~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~d~~g~~v 244 (285)
T 4KZS_A 182 ITFDNNSDAEIKAALISAYARVLTPSDEEKLYQIKNEVFTD--------SANGITRIRVVVSASDCQGTPV 244 (285)
T ss_dssp ECCCSSCCHHHHHHHHHHHTTTCEEECCSSSCEECCCBSSS--------BCCCCBBTTBCCCCCCCCCCCC
T ss_pred EEEcCCChHHHHHHHHHHHhhhccCCCcccceEEEEEEEEe--------cCCCeEEEEEEEEEEcCCCCeE
No 5
>PF20033.3 ; DUF6438 ; Domain of unknown function (DUF6438)
Probab=32.39 E-value=1.6e+02 Score=18.27 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eeccccEEeCCCCcCCCCccCCCCCceEEEcCCHHHHhh
Q FD01873430_034 16 IMGSGTIQTKDPGARGKGSIQGKPQGVYVTTLSPEELKS 54 (119)
Q Consensus 16 I~~s~~I~~~~~~~ra~~~~kg~p~GVYVTt~SPe~L~~ 54 (119)
|.+.+.+.+ .+.... ...|.|...++++++.+
T Consensus 19 I~~dG~v~~-----~~~~~~--~~~g~~~~~l~~~~~~~ 50 (76)
T A0A0Q7E0J7_9CA 19 LRNDGTVYF-----CGRYYV--QAAGWREGRITREQFDT 50 (76)
T ss_pred EeCCCEEEE-----ECeecc--cCCeEEEEEcCHHHHHH
No 6
>PF10694.13 ; DUF2500 ; Protein of unknown function (DUF2500)
Probab=26.89 E-value=70 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ccceeEEEEEEechhheeEecCCCCeEEEEEEcC
Q FD01873430_034 65 KEKSTHFISFEIDSSKVKRVDRQNGYLRLYIEED 98 (119)
Q Consensus 65 ~eKSt~yi~Fevd~s~lK~v~~~~g~~r~yi~gD 98 (119)
.....|++.|+.++..-..+.-....+...-+||
T Consensus 58 ~~~~~y~v~F~~~~G~~~e~~v~~~~y~~l~~Gd 91 (106)
T Q67LD8_SYMTH/1 58 SHHTAYYVTFEFEDGRREEFSVRGDQYGLLVEGD 91 (106)
T ss_pred cccEEEEEEEEECCCCEEEEEEcHHHcCccCCCC
No 7
>2XND_H ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL; ATP PHOSPHORYLASE (H+ TRANSPORTING), ATP SYNTHESIS, F1FO ATP SYNTHASE, HYDROLASE, ION TRANSPORT, P-LOOP; HET: ANP; 3.5A {BOS TAURUS}
Probab=25.51 E-value=2.5e+02 Score=20.14 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCceEEEcCCHHHHhhcCccccccCCccceeEEEEEEechhheeEecCCCCeEEEEEEcCeEeecccccee
Q FD01873430_034 39 PQGVYVTTLSPEELKSSGLRGKMGLTKEKSTHFISFEIDSSKVKRVDRQNGYLRLYIEEDIVLRDVNNKLR 109 (119)
Q Consensus 39 p~GVYVTt~SPe~L~~~g~k~~lGlT~eKSt~yi~Fevd~s~lK~v~~~~g~~r~yi~gDv~Lrd~N~k~~ 109 (119)
|.|.+........+.-.+..|.+|+-..++.....+.. ..+.....+.....++|.+-+-....|++..
T Consensus 9 p~~~~~~~~~v~~v~~~~~~G~~~il~~H~~~i~~l~~--G~~~i~~~~~~~~~~~i~~G~~~v~~~~~~~ 77 (131)
T 2XND_H 9 PTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRP--GLVVVHAEDGTTSKYFVSSGSVTVNADSSVQ 77 (131)
T ss_dssp SSCEEEEEEECSEEEECBSSSCEEECTTCCCCCEEBCS--EEEEEECSSSCCEEEEESSEEEEECSSSEEE
T ss_pred CCceEEcCCcEEEEEEecCCccEEecCCCCCeEEEeCC--EEEEEEeCCCCEEEEEEecceEEECCCCeEE
No 8
>PF04025.16 ; RemA-like ; Extracellular matrix regulatory protein A-like
Probab=25.47 E-value=1.1e+02 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eEEEcCCHHHHhh
Q FD01873430_034 42 VYVTTLSPEELKS 54 (119)
Q Consensus 42 VYVTt~SPe~L~~ 54 (119)
||++++||++|.+
T Consensus 59 vy~S~is~~TL~k 71 (73)
T R7MLC1_9FIRM/3 59 VILSSLITDTVAS 71 (73)
T ss_pred EEEeCCCHHHHHh
No 9
>7P1W_A Putative regulatory protein GTNG_1019; Biofilm, DNA-binding, histone-like, Geobacillus, DNA BINDING PROTEIN; 1.8A {Geobacillus thermodenitrificans (strain NG80-2)}
Probab=24.95 E-value=1.1e+02 Score=22.35 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred eEEEcCCHHHHhh
Q FD01873430_034 42 VYVTTLSPEELKS 54 (119)
Q Consensus 42 VYVTt~SPe~L~~ 54 (119)
||.+++||++|.+
T Consensus 70 vylSpis~~TL~k 82 (94)
T 7P1W_A 70 VILSSVQPETVAN 82 (94)
T ss_dssp EEEESSCHHHHHH
T ss_pred EEEeCCCHHHHHH
No 10
>2JDI_H ATP SYNTHASE DELTA CHAIN; ATP PHOSPHORYLASE, HYDROLASE, ATP SYNTHESIS; HET: ANP; 1.9A {BOS TAURUS} SCOP: a.2.10.1, b.93.1.1
Probab=21.79 E-value=3.6e+02 Score=20.05 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCceEEEcCCHHHHhhcCccccccCCccceeEEEEEEechhheeEecCCCCeEEEEEEcCeEeecccccee
Q FD01873430_034 39 PQGVYVTTLSPEELKSSGLRGKMGLTKEKSTHFISFEIDSSKVKRVDRQNGYLRLYIEEDIVLRDVNNKLR 109 (119)
Q Consensus 39 p~GVYVTt~SPe~L~~~g~k~~lGlT~eKSt~yi~Fevd~s~lK~v~~~~g~~r~yi~gDv~Lrd~N~k~~ 109 (119)
|.+++........+.-.+..|.+|+-..++.+...+.. ..+.....+.....++|.+-+-....|+++.
T Consensus 23 p~~~~~~~~~v~~v~~~~~~G~~gIl~~H~~~i~~l~~--G~i~i~~~~~~~~~~~v~~G~~~v~~~~~v~ 91 (146)
T 2JDI_H 23 PTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRP--GLVVVHAEDGTTSKYFVSSGSVTVNADSSVQ 91 (146)
T ss_dssp SSCEEEC-----CCCCCC-----------------CCS--BCCCC----------CBCSBC---------C
T ss_pred CCceEEeCCceeEEEEecCCccEEecCCCcCeEEEeCC--eEEEEEeCCCCEEEEEEeCCeEEECCCCEEE