Query FD01543122_02343 type IV secretion protein Rhs
Match_columns 92
No_of_seqs 44 out of 50
Neff 3.45082
Searched_HMMs 86581
Date Mon Feb 26 21:09:45 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/5051580.hhr -oa3m ../results/5051580.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15633.10 ; Tox-ART-HYD1 ; HY 99.0 1.6E-09 1.8E-14 68.0 5.7 82 4-89 1-95 (101)
2 7ZHL_A RHS repeat protein; bac 94.9 0.16 1.8E-06 33.5 5.0 61 1-69 4-64 (116)
3 PF18096.5 ; Thump_like ; THUMP 75.2 13 0.00015 23.4 4.0 31 31-62 29-59 (73)
4 PF12298.12 ; Bot1p ; Eukaryoti 49.3 38 0.00044 26.2 2.9 27 27-53 108-134 (171)
5 5ITM_B AbrB family transcripti 45.4 64 0.00073 16.9 2.7 29 42-73 18-48 (48)
6 PF20356.2 ; DUF6651 ; Family o 43.2 75 0.00087 22.1 3.4 32 18-49 49-82 (112)
7 6T7O_B Ribosome hibernation pr 42.8 89 0.001 19.9 3.4 46 30-75 5-50 (67)
8 PF14467.10 ; DUF4426 ; Domain 42.5 39 0.00045 24.0 1.9 20 40-60 18-37 (120)
9 PF12324.12 ; HTH_15 ; Helix-tu 42.3 32 0.00037 22.8 1.4 21 35-55 31-51 (74)
10 7KW9_A tRNA 2'-phosphotransfer 40.5 91 0.0011 22.4 3.6 52 6-66 99-150 (178)
11 6EDE_A Probable RNA 2'-phospho 40.0 92 0.0011 23.3 3.6 53 6-66 122-174 (203)
12 8TG4_A Probable RNA 2'-phospho 39.1 74 0.00085 23.8 3.0 51 6-64 116-166 (206)
13 3JBN_2 40S ribosomal protein e 37.3 12 0.00014 22.9 -1.0 46 27-72 3-57 (68)
14 6GZZ_X3 Ribosome hibernation p 35.3 1.2E+02 0.0014 18.0 3.1 46 30-75 4-49 (57)
15 3LYV_C Ribosome-associated fac 33.6 1.1E+02 0.0013 19.4 2.8 46 30-75 4-49 (66)
16 3KA5_B Ribosome-associated pro 33.5 1.2E+02 0.0014 19.2 3.0 46 30-75 3-48 (65)
17 PF14584.10 ; DUF4446 ; Protein 30.4 1.4E+02 0.0017 22.5 3.4 26 22-47 116-145 (150)
18 PF07180.15 ; CaiF_GrlA ; CaiF/ 29.3 36 0.00041 25.4 0.1 25 36-60 35-59 (137)
19 PF19610.3 ; DUF6115 ; Family o 29.0 80 0.00092 23.8 1.9 17 38-54 140-156 (167)
20 6E3A_A Probable RNA 2'-phospho 28.2 2.5E+02 0.0029 20.1 4.2 51 6-64 101-151 (182)
21 7LW0_D Terminase small subunit 28.1 37 0.00043 17.3 0.0 24 38-61 1-24 (56)
22 4JMP_A C-terminal fragment of 27.8 1E+02 0.0012 22.1 2.2 17 36-52 15-31 (269)
23 PF20063.3 ; DUF6462 ; Family o 27.7 1E+02 0.0012 14.3 1.6 18 37-54 1-18 (51)
24 3UC2_B hypothetical protein wi 27.5 1.2E+02 0.0014 22.6 2.5 24 40-64 40-63 (139)
25 PF16321.9 ; Ribosom_S30AE_C ; 27.2 2.2E+02 0.0026 16.7 3.5 52 24-75 1-52 (57)
26 PF06806.16 ; DUF1233 ; Putativ 26.6 1.2E+02 0.0013 17.4 1.9 19 35-53 5-23 (70)
27 8TFY_A Probable RNA 2'-phospho 26.1 3.7E+02 0.0043 18.9 4.8 53 4-64 93-145 (177)
28 6G1T_A AM32; Repressor, Protei 25.0 46 0.00053 24.0 0.0 21 40-60 64-84 (122)
29 PF07453.17 ; NUMOD1 ; NUMOD1 d 24.3 1.1E+02 0.0012 15.1 1.3 14 41-54 21-34 (40)
30 6S0X_v Ribosome hibernation pr 23.8 1.5E+02 0.0017 21.1 2.3 38 38-75 117-154 (162)
31 PF18361.5 ; ssDBP_DBD ; Single 23.8 1.3E+02 0.0015 23.7 2.2 31 43-73 90-123 (136)
32 8BAR_A E. coli C7 DarT1; TOXIN 23.7 75 0.00087 23.5 0.9 19 6-25 18-36 (208)
33 PF08535.14 ; KorB ; KorB domai 23.3 35 0.00041 20.5 -0.7 33 37-69 1-33 (92)
34 3TEK_A ThermoDBP-single strand 22.4 1.4E+02 0.0016 23.8 2.2 31 43-73 102-135 (148)
35 PF10051.13 ; DUF2286 ; Unchara 22.2 1.8E+02 0.002 23.4 2.7 27 39-65 58-86 (163)
36 3MX7_A Fas apoptotic inhibitor 22.1 1.7E+02 0.002 19.0 2.2 33 60-92 10-43 (90)
37 2PJP_A Selenocysteine-specific 21.9 89 0.001 20.3 0.9 50 13-62 41-103 (121)
38 7YK3_A DNA ADP-ribosyl transfe 21.9 1.3E+02 0.0015 23.6 1.9 21 6-26 42-62 (242)
39 7XI6_A C56; Archaea, Integrate 21.8 2.6E+02 0.003 15.7 3.1 29 42-73 21-51 (56)
40 5MYJ_A Ribosome hibernation pr 21.5 1.7E+02 0.0019 21.4 2.3 38 38-75 139-176 (185)
41 3LL7_A Putative methyltransfer 21.2 3.1E+02 0.0036 23.0 4.0 35 27-62 359-393 (410)
42 4KT5_C GrlA; Beta Barrel, HTH 21.1 62 0.00072 24.2 0.1 25 36-60 35-59 (137)
43 6ZHX_K Chromodomain-helicase-D 20.9 94 0.0011 19.4 0.8 9 36-44 28-36 (37)
44 7OMV_AAA DarT domain-containin 20.9 1.4E+02 0.0016 22.2 1.8 21 6-26 14-34 (210)
45 PF20987.1 ; I-TevI_DNA-bd ; In 20.9 1.5E+02 0.0017 15.5 1.5 15 40-54 22-36 (52)
46 5F8C_C Methyltransferase; meth 20.5 31 0.00035 26.3 -1.6 41 13-53 35-75 (377)
47 5NGM_Av Ribosome hibernation p 20.2 3.9E+02 0.0045 19.6 3.9 43 38-82 142-185 (190)
No 1
>PF15633.10 ; Tox-ART-HYD1 ; HYD1 signature containing ADP-ribosyltransferase
Probab=99.02 E-value=1.6e-09 Score=68.04 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=55.2 Template_Neff=10.100
Q ss_pred eEEecChhhHHHHHhcCeEEeccc----------CceEEEec---CCCcCCHHHHHHHhCCCcccccccEEeecChhhEE
Q FD01543122_023 4 LRHYTSNQGFAAIKESMKILAGDQ----------NAVFAVRA---KGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVE 70 (92)
Q Consensus 4 vRHYTn~~g~~gI~~~~~I~A~Dq----------NrVf~e~A---k~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~ 70 (92)
+.|||+..|+++|.++|.|+++.. ..||.+.- ...+.+...+....++..+++..|||||++. ++
T Consensus 1 ~yHyt~~~g~~~I~~~~~i~~s~~~~~~~~~~~g~g~y~t~~~p~~~~~~~~~~~~~~~~~~~~k~~~~i~id~~~--~~ 78 (101)
T G8M247_ACECE/5 1 LYHYTDEVGLNGILNSKKLKPSLKAVNPKDARYGNGQYLSDIIPGTKTPGQLSKQFINNPFQGKRFTYYIEIDVTD--LN 78 (101)
T ss_pred CcccCCHHHHHHHHccCCCCCCcccCCccccccCCCeeccCCCCCCCChHHHHhhhhCCcccccceEEEEEEEcCC--Ce
Confidence 479999999999999999997763 45677542 2223333344445557789999999999988 44
Q ss_pred EEEcCCcceEEEEEcCeec
Q FD01543122_023 71 FRKNDLGVEEYKIKGDIEL 89 (92)
Q Consensus 71 ~~~Np~~~~E~~i~Gdv~L 89 (92)
+..++.. .+.+.|++.|
T Consensus 79 ~~~~~~~--v~~~~~~~~l 95 (101)
T G8M247_ACECE/5 79 IIKGRDG--VYVVLGEEPL 95 (101)
T ss_pred eEeCCCC--EEEeCCCCCC
Confidence 5554433 3444444433
No 2
>7ZHL_A RHS repeat protein; bacterial toxin, secreted toxin, T6SS, ADP-ribosyltransferase, translation inhibitor, TOXIN; 2.2A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=94.94 E-value=0.16 Score=33.47 Aligned_cols=61 Identities=8% Similarity=0.283 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CeeeEEecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhE
Q FD01543122_023 1 VIRLRHYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRV 69 (92)
Q Consensus 1 ~vRvRHYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~ 69 (92)
++|+-++.+...+..+..+|.+.-...+..|+-.... ...|--....|..|||||++.+.+
T Consensus 4 ~~~vgr~ms~~e~~~m~~tg~v~~~~~g~t~v~~~~~--------~~~~~~~~~~g~~~vefdv~~~~l 64 (116)
T 7ZHL_A 4 TATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPAD--------IDAFGKQAKNGAMYVEFDVPEKSL 64 (116)
T ss_dssp EEEEEEEECHHHHHHHHHHTBCCCCTTSEEEEBSSCC--------TTSSTTTSCTTCEEEEEEEEGGGC
T ss_pred ceeeccccCHHHHHHHHhhCCeeecCCCceeeecCcC--------hhhhhhhccCCceEEEeecCHHhc
No 3
>PF18096.5 ; Thump_like ; THUMP domain-like
Probab=75.17 E-value=13 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred EEEecCCCcCCHHHHHHHhCCCcccccccEEe
Q FD01543122_023 31 FAVRAKGKPLSMADAADKFKIKQNHARNYIDF 62 (92)
Q Consensus 31 f~e~Ak~KplS~~dae~ky~I~~Grgr~yVEf 62 (92)
.....++-|++|.+..++|+++ |.+..++-+
T Consensus 29 ~~v~~Rg~~~~~~~lrk~l~~~-g~~~~~l~~ 59 (73)
T L0DLW3_SINAD/3 29 LEIKTKGTDLRPEALRAQWKPR-GPHPATLLL 59 (73)
T ss_pred eEEEECCCCCCHHHHHHHhCCC-CCCCEEEEE
No 4
>PF12298.12 ; Bot1p ; Eukaryotic mitochondrial regulator protein
Probab=49.31 E-value=38 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred cCceEEEecCCCcCCHHHHHHHhCCCc
Q FD01543122_023 27 QNAVFAVRAKGKPLSMADAADKFKIKQ 53 (92)
Q Consensus 27 qNrVf~e~Ak~KplS~~dae~ky~I~~ 53 (92)
....|..-+-..+++|.|||+-|++.+
T Consensus 108 ~~~~F~~i~Es~~Ftp~DAak~l~~~p 134 (171)
T Q6FQ61_CANGA/1 108 LSSRFLTIAESQPFGPVDAAKVLELEP 134 (171)
T ss_pred CCccEEEccCCCCCChhhHHHHcCCCC
No 5
>5ITM_B AbrB family transcriptional regulator; Histone-like protein, Complex, DNA-binding fold, DNA BINDING PROTEIN; 1.4A {Sulfolobus solfataricus}
Probab=45.36 E-value=64 Score=16.88 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHhCCCcccccccEEeecCh--hhEEEEE
Q FD01543122_023 42 MADAADKFKIKQNHARNYIDFDIDT--NRVEFRK 73 (92)
Q Consensus 42 ~~dae~ky~I~~Grgr~yVEfDv~~--~~~~~~~ 73 (92)
|.+..+.++++.| ..+++.+.. +.+..++
T Consensus 18 p~~i~~~l~~~~g---~~~~~~~~~~~~~i~i~~ 48 (48)
T 5ITM_B 18 PAKVRQKFQIKEG---DLVKVTFDESEGVVKIQL 48 (48)
T ss_dssp CHHHHTTSCCCTT---CEEEEEEETTTTEEEEEC
T ss_pred CHHHHHHcCCCCC---CEEEEEEeCCCCEEEEeC
No 6
>PF20356.2 ; DUF6651 ; Family of unknown function (DUF6651)
Probab=43.19 E-value=75 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred hcCeEEecccCceEEEecC--CCcCCHHHHHHHh
Q FD01543122_023 18 ESMKILAGDQNAVFAVRAK--GKPLSMADAADKF 49 (92)
Q Consensus 18 ~~~~I~A~DqNrVf~e~Ak--~KplS~~dae~ky 49 (92)
++|.+.+.|.+.--..... ++|||+.|+-+.+
T Consensus 49 edG~~~v~d~~G~~~~~~~~~g~p~t~~e~v~~l 82 (112)
T A8AHM9_CITK8/1 49 EEGKVVAYDGTGNKIYSRSKPGELASFDEALEFL 82 (112)
T ss_pred eCCEEEEECCCCCEeecCCCCCcccCHHHHHHHH
No 7
>6T7O_B Ribosome hibernation promotion factor; HPF, Ribosome, Staphylococcus aureus, Hibernating Promoting Factor, RIBOSOMAL PROTEIN; 1.60003624659A {Staphylococcus aureus (strain NCTC 8325)}
Probab=42.77 E-value=89 Score=19.91 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 30 VFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 30 Vf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
|-.+...-+|||+.||...+......---|...|...-.+-+++..
T Consensus 5 v~~~~~~~~pms~~eAi~~l~~~~~~f~~F~n~~t~~~~Vlyr~~d 50 (67)
T 6T7O_B 5 IRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKD 50 (67)
T ss_dssp EECCCSCCSCBCHHHHHHHHHHHTCSEEEEEBTTTSSEEEEEECTT
T ss_pred EEeeeecCCeecHHHHHHHhHhhCCcEEEEEECCCCcEEEEEEcCC
No 8
>PF14467.10 ; DUF4426 ; Domain of unknown function (DUF4426)
Probab=42.47 E-value=39 Score=23.95 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCHHHHHHHhCCCcccccccE
Q FD01543122_023 40 LSMADAADKFKIKQNHARNYI 60 (92)
Q Consensus 40 lS~~dae~ky~I~~Grgr~yV 60 (92)
|+| +.|+.|||.+++.+.+|
T Consensus 18 L~~-~~A~~~gi~r~~~~~~l 37 (120)
T L0DSP5_THIND/3 18 LSP-EVARAYDVRRSRGRALV 37 (120)
T ss_pred CCH-HHHHhhCCcccCCeEEE
No 9
>PF12324.12 ; HTH_15 ; Helix-turn-helix domain of alkylmercury lyase
Probab=42.33 E-value=32 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred cCCCcCCHHHHHHHhCCCccc
Q FD01543122_023 35 AKGKPLSMADAADKFKIKQNH 55 (92)
Q Consensus 35 Ak~KplS~~dae~ky~I~~Gr 55 (92)
|+++|.||.+.+...|+....
T Consensus 31 a~G~PVs~~~LA~~~g~~~~~ 51 (74)
T F4CKR9_PSEUX/7 31 AEGEPVTLDRLAEAAGTSVDQ 51 (74)
T ss_pred HcCCCCCHHHHHHHHCCCHHH
No 10
>7KW9_A tRNA 2'-phosphotransferase; tRNA 2'-phosphotransferase NAD+, TRANSFERASE; HET: NAD; NMR {Runella slithyformis}
Probab=40.49 E-value=91 Score=22.40 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred EecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeecCh
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDT 66 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~ 66 (92)
|-|+..-...|.++| |.+...+.|+..... +.+...|...+ ..-+|++|+..
T Consensus 99 hgt~~~~~~~I~~~G-L~~~~r~~i~l~~~~-------~~~~~~g~r~~-~~v~i~id~~~ 150 (178)
T 7KW9_A 99 HGTAEKNFDLILKDG-IKKMSRHHVHLSQDI-------TTARKVGMRHG-KPVVLSVDAKG 150 (178)
T ss_dssp CEEESHHHHHHHHSC-BCCSSSSCEEEBSSH-------HHHHHHHTTTS-SEEECEECHHH
T ss_pred EccchhhHHHHHHhc-ccccCCCeEEEecCh-------hcchhhcccCC-CCEEEEEcHHH
No 11
>6EDE_A Probable RNA 2'-phosphotransferase; KptA, Tpt1, TRPT1, TRANSFERASE; HET: HQG; 1.553A {Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)} SCOP: d.166.1.0
Probab=39.95 E-value=92 Score=23.31 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeecCh
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDT 66 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~ 66 (92)
|-|+......|.++| |.+...+.|....... .+...|...+...-+|++|+..
T Consensus 122 h~t~~~~~~~I~~~G-L~p~~r~~i~l~~~~~-------~a~~~g~r~~~~~v~i~Id~~~ 174 (203)
T 6EDE_A 122 HGTARRFVKSIKEKG-LQPQGRQYVHLSADVE-------TALQVGKRRDIKPVLLIVNALE 174 (203)
T ss_dssp EEECGGGHHHHHHHC-BCCTTSSSEEEESSHH-------HHHHHHHTTCSSCEEEEECHHH
T ss_pred eeeHHHHHHHHHHcC-CCCCCCCeEEeeCChh-------HHHHhcccCCCCCEEEEEcHHH
No 12
>8TG4_A Probable RNA 2'-phosphotransferase; tRNA 2'-PHOSPHOTRANSFERASE, TPT1, tRNA SPLICING, ADP-ribose-2"-phosphate, Aeropyrum pernix, TRANSFERASE; HET: 9SO; 1.37A {Aeropyrum pernix}
Probab=39.07 E-value=74 Score=23.78 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeec
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDI 64 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv 64 (92)
|-|.......|.+.| |.+.....|+...... .+...|...+...-+|++|+
T Consensus 116 h~t~~~~~~~I~~~G-L~p~~r~~v~L~~~~~-------~a~~~g~R~~~~~v~i~vd~ 166 (206)
T 8TG4_A 116 HGTTEEALPLIMERG-IMRGRRLKVHLTSSLE-------DAVSTGRRHGNLVAVLLVDV 166 (206)
T ss_dssp EEEEGGGHHHHHHHC-BCCTTSSSEEEESCHH-------HHHHHHHTTCSSEEEEEEEH
T ss_pred EEECHHHHHHHHHHh-hhcCCCceeeecCCHH-------HHHHhcccCCCCeEEEEEeH
No 13
>3JBN_2 40S ribosomal protein eS25; RIBOSOME; 4.7A {Plasmodium falciparum 3D7}
Probab=37.30 E-value=12 Score=22.90 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred cCceEEEec---------CCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEE
Q FD01543122_023 27 QNAVFAVRA---------KGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFR 72 (92)
Q Consensus 27 qNrVf~e~A---------k~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~ 72 (92)
+|.|+..++ +.+.++|.+.+++++|...-++..+.--...+.+.+.
T Consensus 3 ~~~v~~~~~~~~~~~~i~~~~~it~~~la~~~~i~~s~a~~~l~~L~~~g~i~~~ 57 (68)
T 3JBN_2 3 NHAVFIDKSLHSKILECKNMKVITPSAIAEKYKVNLSVARAVINHLADKKLIAEV 57 (68)
T ss_dssp CCCSCC---------------CCCHHHHHHHHTCCHHHHHHHHHHHHC-------
T ss_pred cccccCCHHHHHHHHHHhhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEE
No 14
>6GZZ_X3 Ribosome hibernation promoting factor; Ribosome, hibernation, 100S, dimer, cryo-EM; 4.13A {Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)}
Probab=35.34 E-value=1.2e+02 Score=17.99 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred eEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 30 VFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 30 Vf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
|-...-.-+|||..||...+......---|...|...-.+-+++..
T Consensus 4 v~~~~~~~~~ms~~eAi~~l~~~~~~f~~F~~~~t~~~~vlyr~~~ 49 (57)
T 6GZZ_X3 4 VRVKRFEMKPMDPEEAAFQMEALGHSFFVFRNAKTDEINVIYRRKD 49 (57)
T ss_pred EEEeeecCCeeCHHHHHHHHHHhCCcEEEEEeCCCCeEEEEEEcCC
No 15
>3LYV_C Ribosome-associated factor Y; ribosomal protein S30Ae family, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CHAPERONE; HET: MSE; 2.7A {Streptococcus pyogenes}
Probab=33.56 E-value=1.1e+02 Score=19.41 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 30 VFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 30 Vf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
|-...-.-+|||+.||...+......---|.+.|...-.+-+++..
T Consensus 4 vr~k~~~~~pms~~EAv~~l~~~~~~f~vF~n~~t~~~~vlyr~~d 49 (66)
T 3LYV_C 4 VRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRRED 49 (66)
T ss_dssp CEEEECCCCEECHHHHHHHHHHTTCSEEEEEETTTCCEEEEEECTT
T ss_pred EeeeeecCCeecHHHHHHHHHHhCCcEEEEEECCCCcEEEEEECCC
No 16
>3KA5_B Ribosome-associated protein Y (PSrp-1); Ribosome-associated protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CHAPERONE; HET: MSE; 1.8A {Clostridium acetobutylicum}
Probab=33.55 E-value=1.2e+02 Score=19.16 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred eEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 30 VFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 30 Vf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
|-.+...-+|||+.||...+......---|.+.+...-.+-+++..
T Consensus 3 v~~~~~~~~pms~~eAv~~l~~~~~~f~vF~n~~t~~~~vvyrr~d 48 (65)
T 3KA5_B 3 VKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKD 48 (65)
T ss_dssp EEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTT
T ss_pred eeEEeeeCCeeCHHHHHHHHHHhCCcEEEEEeCCCCcEEEEEEcCC
No 17
>PF14584.10 ; DUF4446 ; Protein of unknown function (DUF4446)
Probab=30.42 E-value=1.4e+02 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred EEecccCceEEEecCCC----cCCHHHHHH
Q FD01543122_023 22 ILAGDQNAVFAVRAKGK----PLSMADAAD 47 (92)
Q Consensus 22 I~A~DqNrVf~e~Ak~K----plS~~dae~ 47 (92)
|..+|+.++|+-+-++. +|||+|-+.
T Consensus 116 l~~R~~~r~YaK~I~~G~s~~~LS~EE~~a 145 (150)
T D3EJB3_GEOS4/1 116 LHNRESSYVYAKPLKDGQSKYPLSPEEKEA 145 (150)
T ss_pred eEeCCCeEEEEEEeeCCCCCCCCCHHHHHH
No 18
>PF07180.15 ; CaiF_GrlA ; CaiF/GrlA transcriptional regulator
Probab=29.28 E-value=36 Score=25.35 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CCCcCCHHHHHHHhCCCcccccccE
Q FD01543122_023 36 KGKPLSMADAADKFKIKQNHARNYI 60 (92)
Q Consensus 36 k~KplS~~dae~ky~I~~Grgr~yV 60 (92)
.++++|..|+++.|+|..-++.+.+
T Consensus 35 qg~~vt~~dVa~aF~Is~rrAs~il 59 (137)
T Q8VLD0_ECOLX/1 35 QEKWISRNDIAEAFGINLRRASFII 59 (137)
T ss_pred cCCeEeHHHHHHHhCCCHHHHHHHH
No 19
>PF19610.3 ; DUF6115 ; Family of unknown function (DUF6115)
Probab=29.03 E-value=80 Score=23.80 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred CcCCHHHHHHHhCCCcc
Q FD01543122_023 38 KPLSMADAADKFKIKQN 54 (92)
Q Consensus 38 KplS~~dae~ky~I~~G 54 (92)
+-|||.+.|+++||+.|
T Consensus 140 ~G~s~~eIAk~Lgig~G 156 (167)
T R7NH18_9FIRM/3 140 NGYNDVDIAKRLKLGVG 156 (167)
T ss_pred CCCCHHHHHHHhCCChh
No 20
>6E3A_A Probable RNA 2'-phosphotransferase; KptA, Tpt1, TRPT1, TRANSFERASE; HET: COA, HQG; 1.4A {Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)} SCOP: d.166.1.0
Probab=28.21 E-value=2.5e+02 Score=20.06 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred EecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeec
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDI 64 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv 64 (92)
|-|.......|...| |.+.....|+..... +.+...|...+...-+|++|+
T Consensus 101 h~t~~~~~~~I~~~G-l~~~~r~~i~l~~~~-------~~~~~~g~r~~~~~v~i~id~ 151 (182)
T 6E3A_A 101 HGTARRFVKSIKEKG-LQPQGRQYVHLSADV-------ETALQVGKRRDIKPVLLIVNA 151 (182)
T ss_dssp EEECGGGHHHHHHHC-BCCTTSSSEEEESSH-------HHHHHHHHTTCSSCEEEEECH
T ss_pred EechHHHHHHHHHhC-CCCCCCCeEEeeCCH-------HHHHHhCCCCCCCCEEEEEEH
No 21
>7LW0_D Terminase small subunit; DNA Packaging, Terminase, VIRAL PROTEIN; 2.32A {Escherichia phage lambda}
Probab=28.13 E-value=37 Score=17.30 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CcCCHHHHHHHhCCCcccccccEE
Q FD01543122_023 38 KPLSMADAADKFKIKQNHARNYID 61 (92)
Q Consensus 38 KplS~~dae~ky~I~~Grgr~yVE 61 (92)
+.++..++++.+++.+..-..|++
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~~~~~ 24 (56)
T 7LW0_D 1 MEVNKKQLADIFGASIRTIQNWQE 24 (56)
T ss_dssp CEECHHHHHHHHTCCHHHHHHHHH
T ss_pred CccCHHHHHHHHCCCHHHHHHHHH
No 22
>4JMP_A C-terminal fragment of CapA, Protein tyrosine kinase; Rossmann fold, tyrosine kinase, TRANSFERASE; 1.3A {Staphylococcus aureus}
Probab=27.78 E-value=1e+02 Score=22.06 Aligned_cols=17 Identities=6% Similarity=0.136 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCCcCCHHHHHHHhCCC
Q FD01543122_023 36 KGKPLSMADAADKFKIK 52 (92)
Q Consensus 36 k~KplS~~dae~ky~I~ 52 (92)
.++++|++|+++.+|+.
T Consensus 15 ~~~~~s~~~~~~~~g~p 31 (269)
T 4JMP_A 15 DKRIKTEEDVESQLGLP 31 (269)
T ss_dssp -----CHHHHCCCCCCC
T ss_pred cCCccCHHHHHHHHCCC
No 23
>PF20063.3 ; DUF6462 ; Family of unknown function (DUF6462)
Probab=27.72 E-value=1e+02 Score=14.33 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred CCcCCHHHHHHHhCCCcc
Q FD01543122_023 37 GKPLSMADAADKFKIKQN 54 (92)
Q Consensus 37 ~KplS~~dae~ky~I~~G 54 (92)
...++..++++.+++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (51)
T A0A1H6U056_9FI 1 KEYMRYQEAAEYFSMSMT 18 (51)
T ss_pred CCcccHHHHHHHhCCCHH
No 24
>3UC2_B hypothetical protein with immunoglobulin-like fold; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION; HET: SO4, MSE, GOL; 2.09A {Pseudomonas aeruginosa}
Probab=27.48 E-value=1.2e+02 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred CCHHHHHHHhCCCcccccccEEeec
Q FD01543122_023 40 LSMADAADKFKIKQNHARNYIDFDI 64 (92)
Q Consensus 40 lS~~dae~ky~I~~Grgr~yVEfDv 64 (92)
|+| +.|..|||.+++.+..|-+=+
T Consensus 40 L~~-eiA~~ygi~Rs~~~~llnVsv 63 (139)
T 3UC2_B 40 LQP-NVASAVGLVRSKAQGVINVVP 63 (139)
T ss_dssp SCH-HHHHHTTCCCCTTEEEEEEEE
T ss_pred cCH-HHHHhhCCCccCceEEEEEEE
No 25
>PF16321.9 ; Ribosom_S30AE_C ; Sigma 54 modulation/S30EA ribosomal protein C terminus
Probab=27.21 E-value=2.2e+02 Score=16.72 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 24 AGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 24 A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
+.+..-|-...-.-+|||..||...+......---|...|...-.+-+++..
T Consensus 1 ~~~~~vv~~~~~~~~~ls~~eA~~~l~~~~~~f~~F~~~~~~~~~vlyr~~d 52 (57)
T Q8RCC0_CALS4/1 1 ETSFEIVKTKRFPIKPMSPEEAILQMNLLGHTFFVFTNAETDMINVVYKRKD 52 (57)
T ss_pred CCCCceEeeecccCCccCHHHHHHHHHhhCCcEEEEEeCCCCeEEEEEEcCC
No 26
>PF06806.16 ; DUF1233 ; Putative excisionase (DUF1233)
Probab=26.56 E-value=1.2e+02 Score=17.45 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred cCCCcCCHHHHHHHhCCCc
Q FD01543122_023 35 AKGKPLSMADAADKFKIKQ 53 (92)
Q Consensus 35 Ak~KplS~~dae~ky~I~~ 53 (92)
....-|+++|+++.+|+.+
T Consensus 5 ~~~~~l~~~e~a~~lg~s~ 23 (70)
T A0A380PD09_YER 5 NPSKWVSEDLLMSLNGMTK 23 (70)
T ss_pred CCccccCHHHHHHHhCCCH
No 27
>8TFY_A Probable RNA 2'-phosphotransferase; tRNA 2'-PHOSPHOTRANSFERASE, TPT1, tRNA SPLICING, NADP, NAD, TRANSFERASE; HET: NAP; 1.54A {Pyrococcus horikoshii OT3}
Probab=26.09 E-value=3.7e+02 Score=18.93 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred eEEecChhhHHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCcccccccEEeec
Q FD01543122_023 4 LRHYTSNQGFAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDFDI 64 (92)
Q Consensus 4 vRHYTn~~g~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEfDv 64 (92)
+-|-|.......|.+.| |.+.....|+..... +.+...|...+...-++++|+
T Consensus 93 l~~~t~~~~~~~I~~~G-l~~~~~~~i~l~~~~-------~~~~~~g~r~~~~~v~i~id~ 145 (177)
T 8TFY_A 93 LYHGTVRRNLKGIMREG-IKPMKRQYVHLSINY-------EDAYNTGMRHGEDVVVLIIDA 145 (177)
T ss_dssp EEEEEEGGGHHHHHHHC-BCCGGGSCEEEESSH-------HHHHHHHGGGCSSEEEEEEEH
T ss_pred EEEEEcHHHHHHHHHhc-cccCCCCeEEEEcCH-------HHHHHhccccCCCeEEEEEeH
No 28
>6G1T_A AM32; Repressor, Protein-DNA complex, Type IV secretion system, DNA BINDING PROTEIN; HET: EPE; 1.93A {Enterococcus faecalis}
Probab=24.97 E-value=46 Score=24.02 Aligned_cols=21 Identities=5% Similarity=0.070 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCHHHHHHHhCCCcccccccE
Q FD01543122_023 40 LSMADAADKFKIKQNHARNYI 60 (92)
Q Consensus 40 lS~~dae~ky~I~~Grgr~yV 60 (92)
|++.|||+.+|+.++.=+.|+
T Consensus 64 lT~~EaAe~lgvs~~tV~~~i 84 (122)
T 6G1T_A 64 ITAKEASQLLGKNDEYFAHIY 84 (122)
T ss_dssp EEHHHHHHHTTCCTTHHHHHH
T ss_pred ccHHHHHHHHCCCHHHHHHHH
No 29
>PF07453.17 ; NUMOD1 ; NUMOD1 domain
Probab=24.31 E-value=1.1e+02 Score=15.13 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CHHHHHHHhCCCcc
Q FD01543122_023 41 SMADAADKFKIKQN 54 (92)
Q Consensus 41 S~~dae~ky~I~~G 54 (92)
|..+|++.+|+..+
T Consensus 21 s~~~a~~~~g~~~~ 34 (40)
T Q02714_PODAN/4 21 SKTQASNILGISRN 34 (40)
T ss_pred CHHHHHHHHCCCHH
No 30
>6S0X_v Ribosome hibernation promoting factor; Ribosome, antibiotics, resistance, Staphylococcus aureus, exit tunnel, RNA, rProteins, erythromycin; HET: ERY; 2.425A {Staphylococcus aureus}
Probab=23.81 E-value=1.5e+02 Score=21.11 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 38 KPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 38 KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
+|||+.||...+......---|...+...-.+-+++.+
T Consensus 117 ~pms~~eA~~~~~~~~~~f~~F~~~~t~~~~vvyrr~d 154 (162)
T 6S0X_v 117 KPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKD 154 (162)
T ss_pred CccCHHHHHHHHHHcCCcEEEEEECCCCcEEEEEEcCC
No 31
>PF18361.5 ; ssDBP_DBD ; Single stranded DNA-binding protein ss DNA binding domain
Probab=23.76 E-value=1.3e+02 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred HHHHHHhCCCccccccc---EEeecChhhEEEEE
Q FD01543122_023 43 ADAADKFKIKQNHARNY---IDFDIDTNRVEFRK 73 (92)
Q Consensus 43 ~dae~ky~I~~Grgr~y---VEfDv~~~~~~~~~ 73 (92)
.+++.+|+|.+|.=-.. +|.|++..++.|.+
T Consensus 90 ~E~~pky~le~GDiF~I~Teleld~~TGel~W~k 123 (136)
T G4RKV8_THETK/1 90 EEAVPRYNLERGDIFMISTELVLDPDTGELLWNR 123 (136)
T ss_pred HhcchhhCCCCCCeEEEEEEEEECCCCCcEEEec
No 32
>8BAR_A E. coli C7 DarT1; TOXIN-ANTITOXIN, DNA ADP-RIBOSYLATION, ADP-ribosyltransferase activity, DNA binding, TOXIN; HET: EDO, APR; 1.63A {Escherichia coli}
Probab=23.71 E-value=75 Score=23.54 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EecChhhHHHHHhcCeEEec
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAG 25 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~ 25 (92)
|+|....+.+|.+.| |...
T Consensus 18 H~T~~~NL~sIl~~G-lls~ 36 (208)
T 8BAR_A 18 HFTHSDNLTSILDNG-LMSR 36 (208)
T ss_dssp EEEEGGGHHHHHHHC-BCCH
T ss_pred eccCcccHHHHHHcC-CccH
No 33
>PF08535.14 ; KorB ; KorB domain
Probab=23.26 E-value=35 Score=20.48 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCcCCHHHHHHHhCCCcccccccEEeecChhhE
Q FD01543122_023 37 GKPLSMADAADKFKIKQNHARNYIDFDIDTNRV 69 (92)
Q Consensus 37 ~KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~ 69 (92)
+..+|+.++++++|+.+..=..|+.+.--++.+
T Consensus 1 ~~g~s~~eia~~~g~s~s~v~~~l~~~~l~~~~ 33 (92)
T Q0VMS5_ALCBS/1 1 SKGWKVTDIAKQLGKNKSWLARYRLLYQSNDAL 33 (92)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHhCCCHHH
No 34
>3TEK_A ThermoDBP-single stranded DNA binding protein; leucine zipper, single stranded DNA binding, DNA BINDING PROTEIN; 2.0A {Thermoproteus tenax}
Probab=22.40 E-value=1.4e+02 Score=23.83 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred HHHHHHhCCCccccccc---EEeecChhhEEEEE
Q FD01543122_023 43 ADAADKFKIKQNHARNY---IDFDIDTNRVEFRK 73 (92)
Q Consensus 43 ~dae~ky~I~~Grgr~y---VEfDv~~~~~~~~~ 73 (92)
.+++.+|+|.+|.=-.. +|.|++..+|.|.+
T Consensus 102 ~E~~pky~le~GDiF~I~Teleld~~TGEl~W~k 135 (148)
T 3TEK_A 102 EEAVPRYNLERGDIFMISTELVLDPDTGELLWNR 135 (148)
T ss_dssp CCCHHHHTCCTTCCEEEEEEEEECTTTCCEEEEE
T ss_pred HhcchhhCCCCCCeEEEEEEEEECCCCCcEEEec
No 35
>PF10051.13 ; DUF2286 ; Uncharacterized protein conserved in archaea (DUF2286)
Probab=22.23 E-value=1.8e+02 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred cCCHHHHH--HHhCCCcccccccEEeecC
Q FD01543122_023 39 PLSMADAA--DKFKIKQNHARNYIDFDID 65 (92)
Q Consensus 39 plS~~dae--~ky~I~~Grgr~yVEfDv~ 65 (92)
||+|...+ ++|+++-.|-.+.++|++|
T Consensus 58 PL~kE~ye~~~ky~l~~~R~g~~a~~~iP 86 (163)
T A2BM94_HYPBU/3 58 PLPPEIADKILELSLKYSLEGNDVIVNLP 86 (163)
T ss_pred CCCHHHHHHHHhcCCccceeCCEEEEEEe
No 36
>3MX7_A Fas apoptotic inhibitory molecule 1; Beta Sheet, APOPTOSIS; 1.76A {Homo sapiens}
Probab=22.09 E-value=1.7e+02 Score=18.95 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEeecChhhEEEEEcCCc-ceEEEEEcCeecCCC
Q FD01543122_023 60 IDFDIDTNRVEFRKNDLG-VEEYKIKGDIELDEK 92 (92)
Q Consensus 60 VEfDv~~~~~~~~~Np~~-~~E~~i~Gdv~L~~r 92 (92)
+.+|.....++..-|+.. ..++.+.|.+-.+.+
T Consensus 10 ~~~~~~~h~I~l~h~~~sG~~~v~vdg~~v~~~~ 43 (90)
T 3MX7_A 10 VALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKE 43 (90)
T ss_dssp EEETTEEEEEEEEECTTTCCEEEEETTEEEEEEC
T ss_pred EEcCCCeEEEEEEccCccCCeEEEECCEEEEEee
No 37
>2PJP_A Selenocysteine-specific elongation factor; selb, protein-rna complex, elongation factor, secis, winged-helix, bulge, translation-RNA COMPLEX; HET: MG; 2.3A {Escherichia coli}
Probab=21.92 E-value=89 Score=20.27 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHhcCeEEecccCceEEEe-------------cCCCcCCHHHHHHHhCCCcccccccEEe
Q FD01543122_023 13 FAAIKESMKILAGDQNAVFAVR-------------AKGKPLSMADAADKFKIKQNHARNYIDF 62 (92)
Q Consensus 13 ~~gI~~~~~I~A~DqNrVf~e~-------------Ak~KplS~~dae~ky~I~~Grgr~yVEf 62 (92)
+....+.|.|...+++.++... +...+++..|+.+.+|+.+.-.-.++|.
T Consensus 41 L~~L~~~g~lv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~r~~~~~sRk~~~~lLe~ 103 (121)
T 2PJP_A 41 LRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEY 103 (121)
T ss_dssp HHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEecCCEEEEHHHHHHHHHHHHHHHHHhCCccHHHHHHHHCCCHHHHHHHHHH
No 38
>7YK3_A DNA ADP-ribosyl transferase; DarT-DarG complex, Toxin-Antitoxin complex, TOXIN, Mycobacterium tuberculosis; HET: PO4; 2.2A {Mycobacterium tuberculosis H37Rv}
Probab=21.87 E-value=1.3e+02 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred EecChhhHHHHHhcCeEEecc
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGD 26 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~D 26 (92)
|+|...-+.+|.+.|.|.+..
T Consensus 42 HfT~i~NL~sIl~~G~L~s~~ 62 (242)
T 7YK3_A 42 HFTHADNLPGIITAGRLLADS 62 (242)
T ss_dssp EEEEGGGHHHHHHHTEEECTT
T ss_pred EEEehhhHHHHHHcCCeecCC
No 39
>7XI6_A C56; Archaea, Integrated element, Non-conjunctive plasmid, AbrB-like protein, DNA BINDING PROTEIN; 2.3A {Saccharolobus solfataricus}
Probab=21.84 E-value=2.6e+02 Score=15.66 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHhCCCcccccccEEeecC--hhhEEEEE
Q FD01543122_023 42 MADAADKFKIKQNHARNYIDFDID--TNRVEFRK 73 (92)
Q Consensus 42 ~~dae~ky~I~~Grgr~yVEfDv~--~~~~~~~~ 73 (92)
|.+..+.++|.+| +.+++.+. .+.+....
T Consensus 21 P~~i~~~~~~~~g---~~v~~~~~~~~~~i~i~~ 51 (56)
T 7XI6_A 21 PRDIAKALGITKE---DEFMLSVETKDGEITLCY 51 (56)
T ss_dssp CHHHHHHTTCCTT---CEEEEEEEEETTEEEEEE
T ss_pred cHHHHHHhCCCCC---CEEEEEEEccCCEEEEEE
No 40
>5MYJ_A Ribosome hibernation promotion factor; ribosome, 70S, lactoccocus lactis, Cryo-EM; 5.6A {Lactococcus lactis subsp. cremoris MG1363}
Probab=21.50 E-value=1.7e+02 Score=21.35 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcC
Q FD01543122_023 38 KPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKND 75 (92)
Q Consensus 38 KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np 75 (92)
+|||+.||...+....-.---|...|...-.+-+++++
T Consensus 139 ~pms~~eA~~~m~~~~~~f~~F~n~~t~~~~v~yr~~d 176 (185)
T 5MYJ_A 139 KPMDAEEAVLQMDMLGHDFYVFTDADSNGTHVVYRRTD 176 (185)
T ss_pred CccCHHHHHHHHHhhCCeEEEEEeCCCCcEEEEEECCC
No 41
>3LL7_A Putative methyltransferase; methytransferase, Structural genomics, MCSG, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, TRANSFERASE; HET: MSE, EDO, FMT; 1.8A {Porphyromonas gingivalis}
Probab=21.21 E-value=3.1e+02 Score=23.02 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred cCceEEEecCCCcCCHHHHHHHhCCCcccccccEEe
Q FD01543122_023 27 QNAVFAVRAKGKPLSMADAADKFKIKQNHARNYIDF 62 (92)
Q Consensus 27 qNrVf~e~Ak~KplS~~dae~ky~I~~Grgr~yVEf 62 (92)
+........++-|++|.+..++|+++ |.|..|+=+
T Consensus 359 ~~~~~~i~~R~~~~~~~~lrk~l~~~-~~~~~~l~~ 393 (410)
T 3LL7_A 359 VVPQASISCRNFPLSPIELRQRSKMA-DGGEKTLMG 393 (410)
T ss_dssp TCSCCEEEEESCSSCHHHHHHHHTCC-CCSSEEEEE
T ss_pred CCCceEEEEeCCCCCHHHHHHHHCCC-CCCCeEEEE
No 42
>4KT5_C GrlA; Beta Barrel, HTH motif, Regulator, TRANSCRIPTION REGULATOR; HET: MSE, PG4; 2.7A {Escherichia coli}
Probab=21.15 E-value=62 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred CCCcCCHHHHHHHhCCCcccccccE
Q FD01543122_023 36 KGKPLSMADAADKFKIKQNHARNYI 60 (92)
Q Consensus 36 k~KplS~~dae~ky~I~~Grgr~yV 60 (92)
.++++|..|.++.|+|..-++.+.+
T Consensus 35 q~~~vt~~dIa~aF~Is~rrAs~il 59 (137)
T 4KT5_C 35 QEKWISRNDIAEAFGINLRRASFII 59 (137)
T ss_dssp TCSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCeEeHHHHHHHhCCCHHHHHHHH
No 43
>6ZHX_K Chromodomain-helicase-DNA-binding protein 1-like; ALC1, CHD1L, chromatin remodeler, DNA damage response, nucleosome, NUCLEAR PROTEIN, GENE REGULATION, DNA BINDING PROTEIN; 2.5A {Xenopus laevis}
Probab=20.88 E-value=94 Score=19.37 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred CCCcCCHHH
Q FD01543122_023 36 KGKPLSMAD 44 (92)
Q Consensus 36 k~KplS~~d 44 (92)
|+++|||+|
T Consensus 28 krr~LS~eE 36 (37)
T 6ZHX_K 28 RKRVLSPEE 36 (37)
T ss_pred cccCCCHhh
No 44
>7OMV_AAA DarT domain-containing protein; TOXIN-ANTITOXIN, DNA ADP-RIBOSYLATION, ADP-ribosyltransferase activity, DNA binding, TOXIN; 1.29A {Thermus sp. 2.9}
Probab=20.87 E-value=1.4e+02 Score=22.21 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EecChhhHHHHHhcCeEEecc
Q FD01543122_023 6 HYTSNQGFAAIKESMKILAGD 26 (92)
Q Consensus 6 HYTn~~g~~gI~~~~~I~A~D 26 (92)
|+|.-.-+.+|.+.|.+....
T Consensus 14 HfT~~~NL~sIl~~G~l~~~~ 34 (210)
T 7OMV_AAA 14 HITHIDNLKGILRMGKLLAHN 34 (210)
T ss_pred EEEeHhhHHHHHHcCCeeCCC
No 45
>PF20987.1 ; I-TevI_DNA-bd ; Intron-encoded endonuclease 1, DNA-binding domain
Probab=20.86 E-value=1.5e+02 Score=15.50 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCHHHHHHHhCCCcc
Q FD01543122_023 40 LSMADAADKFKIKQN 54 (92)
Q Consensus 40 lS~~dae~ky~I~~G 54 (92)
++..++++.+++.++
T Consensus 22 ~~~~~~~~~~~~s~~ 36 (52)
T A0A0D3MV88_9CA 22 PSTSKASDTLGIGKT 36 (52)
T ss_pred CCHHHHHHHHCCCHH
No 46
>5F8C_C Methyltransferase; methyltransferase, Class I, sinefungin, S-adenosyl-L-homocysteine, TRANSFERASE; HET: CSD, GOL; 1.83A {Mycobacterium tuberculosis H37Rv}
Probab=20.48 E-value=31 Score=26.33 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHhcCeEEecccCceEEEecCCCcCCHHHHHHHhCCCc
Q FD01543122_023 13 FAAIKESMKILAGDQNAVFAVRAKGKPLSMADAADKFKIKQ 53 (92)
Q Consensus 13 ~~gI~~~~~I~A~DqNrVf~e~Ak~KplS~~dae~ky~I~~ 53 (92)
+.+......+++.-+..+|..-+...|+|..+.+++.|+.+
T Consensus 35 ~~~~~~~~~l~~~~~~glf~~l~~~~p~s~~ela~~~g~~~ 75 (377)
T 5F8C_C 35 IDSAGLAILVSVGHQTGLLDTMAGLPPATSMEIAEAAGLEE 75 (377)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHTSCSBCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHcCCCCCCHHHHHHHhCCCh
No 47
>5NGM_Av Ribosome hibernation promoting factor; Ribosome Cryo-EM Structural Biology Hibernation, Ribosome; HET: MG; 2.9A {Staphylococcus aureus}
Probab=20.24 E-value=3.9e+02 Score=19.61 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CcCCHHHHHHHhCCCcccccccEEeecChhhEEEEEcCCc-ceEEE
Q FD01543122_023 38 KPLSMADAADKFKIKQNHARNYIDFDIDTNRVEFRKNDLG-VEEYK 82 (92)
Q Consensus 38 KplS~~dae~ky~I~~Grgr~yVEfDv~~~~~~~~~Np~~-~~E~~ 82 (92)
+|||+.||...+... .-.-|+=+|.+.+.+...+--.. ...|.
T Consensus 142 ~pms~~eA~~~m~~~--~~~f~~F~n~~t~~~~vlyrr~dg~~~li 185 (190)
T 5NGM_Av 142 KPMDSEEAVLQMNLL--GHDFFVFTDRETDGTSIVYRRKDGKYGLI 185 (190)
T ss_pred cccCHHHHHHHHHHh--CCcEEEEEeCCCCcEEEEEEccCCCeEeE